Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020244.t1 | XP_013443975.1 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 4.10E-249 | 870.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020244.t1 | A0A072TKP9 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 3.0e-249 | 870.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030339 | MS.gene020244 | PPI |
| MS.gene020244 | MS.gene063341 | PPI |
| MS.gene020244 | MS.gene66390 | PPI |
| MS.gene020244 | MS.gene75022 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020244.t1 | MTR_8g009770 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| MS.gene020244.t1 | MTR_3g110630 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.59e-91 | 284 |
| MS.gene020244.t1 | MTR_6g090060 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.49e-84 | 265 |
| MS.gene020244.t1 | MTR_5g005420 | 36.283 | 452 | 230 | 12 | 1 | 430 | 1 | 416 | 8.78e-79 | 250 |
| MS.gene020244.t1 | MTR_8g102270 | 39.763 | 337 | 162 | 10 | 95 | 427 | 53 | 352 | 8.11e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020244.t1 | AT5G17640 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| MS.gene020244.t1 | AT1G10020 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.15e-90 | 281 |
| MS.gene020244.t1 | AT4G29310 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.15e-89 | 277 |
| MS.gene020244.t1 | AT3G19680 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.52e-74 | 239 |
| MS.gene020244.t1 | AT1G50040 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.85e-67 | 222 |
| MS.gene020244.t1 | AT4G29310 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.24e-60 | 200 |
Find 122 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 8.3:-79078735 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.3:+79079920 | MS.gene020244:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.3:+79079910 | MS.gene020244:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.3:+79078361 | MS.gene020244:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.3:+79078380 | MS.gene020244:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8.3:-79080220 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.3:+79078623 | MS.gene020244:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.3:+79078679 | MS.gene020244:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 8.3:+79078423 | MS.gene020244:CDS |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8.3:-79078936 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 8.3:-79078858 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8.3:-79080001 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8.3:+79078941 | MS.gene020244:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 8.3:+79079811 | MS.gene020244:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.3:-79078373 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8.3:-79080221 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8.3:-79080207 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 8.3:+79078768 | MS.gene020244:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8.3:-79080213 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 8.3:+79078853 | MS.gene020244:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8.3:-79080312 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.3:+79080125 | MS.gene020244:CDS |
| CTTCTGATCTTCCTTCGAAA+AGG | 0.428055 | 8.3:-79080414 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8.3:-79078823 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 8.3:+79080270 | MS.gene020244:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.3:+79078721 | MS.gene020244:CDS |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8.3:+79080350 | MS.gene020244:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8.3:+79079859 | MS.gene020244:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.3:-79079913 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8.3:-79078816 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.3:-79078652 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8.3:+79080179 | MS.gene020244:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 8.3:+79080244 | MS.gene020244:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 8.3:-79080252 | None:intergenic |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.3:-79079958 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8.3:+79080233 | MS.gene020244:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8.3:+79078594 | MS.gene020244:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.3:+79079921 | MS.gene020244:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8.3:-79078498 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.3:+79080240 | MS.gene020244:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.3:-79078367 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 8.3:-79078734 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.3:-79078368 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8.3:+79080219 | MS.gene020244:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 8.3:+79079829 | MS.gene020244:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8.3:+79079998 | MS.gene020244:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8.3:-79078520 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.3:-79080088 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 8.3:+79080424 | MS.gene020244:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8.3:+79079837 | MS.gene020244:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 8.3:+79079830 | MS.gene020244:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 8.3:-79078852 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.3:+79079780 | MS.gene020244:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.3:-79080361 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.3:+79078729 | MS.gene020244:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.3:+79078669 | MS.gene020244:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8.3:-79079982 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.3:+79079947 | MS.gene020244:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.3:+79078782 | MS.gene020244:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.3:-79080077 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.3:+79078946 | MS.gene020244:CDS |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 8.3:+79078789 | MS.gene020244:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.3:+79080126 | MS.gene020244:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.3:+79078722 | MS.gene020244:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.3:-79079922 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.3:+79078372 | MS.gene020244:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.3:+79078471 | MS.gene020244:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 8.3:-79078872 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 8.3:+79080305 | MS.gene020244:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.3:+79078396 | MS.gene020244:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8.3:+79080027 | MS.gene020244:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8.3:+79079999 | MS.gene020244:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.3:+79078690 | MS.gene020244:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.3:+79078381 | MS.gene020244:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.3:+79078730 | MS.gene020244:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.3:+79079776 | MS.gene020244:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 8.3:-79079808 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.3:+79080081 | MS.gene020244:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 8.3:+79080243 | MS.gene020244:CDS |
| TTCGAAGGAAGATCAGAAGA+GGG | 0.558928 | 8.3:+79080418 | MS.gene020244:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.3:+79079781 | MS.gene020244:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.3:-79080093 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.3:-79079953 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 8.3:+79078350 | None:intergenic |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.3:+79080276 | MS.gene020244:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 8.3:+79078414 | MS.gene020244:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8.3:+79079989 | MS.gene020244:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.3:-79080015 | None:intergenic |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.3:+79080016 | MS.gene020244:CDS |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 8.3:+79079812 | MS.gene020244:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8.3:-79078529 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.3:+79080129 | MS.gene020244:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.3:-79079957 | None:intergenic |
| TTTCGAAGGAAGATCAGAAG+AGG | 0.610704 | 8.3:+79080417 | MS.gene020244:CDS |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8.3:-79078535 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.3:+79079973 | MS.gene020244:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.3:-79079899 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.3:-79080392 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.3:+79080383 | MS.gene020244:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8.3:-79078519 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.3:+79078900 | MS.gene020244:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8.3:-79079983 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 8.3:+79078798 | MS.gene020244:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.3:+79078663 | MS.gene020244:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8.3:-79080219 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.3:-79078900 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.3:+79079969 | MS.gene020244:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.3:+79080084 | MS.gene020244:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 8.3:+79079833 | MS.gene020244:CDS |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8.3:+79080210 | MS.gene020244:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8.3:+79080000 | MS.gene020244:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8.3:-79078630 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8.3:+79080329 | MS.gene020244:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.3:+79078723 | MS.gene020244:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 8.3:-79080379 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.3:-79078612 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.3:+79079940 | MS.gene020244:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 8.3:+79080285 | MS.gene020244:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8.3:-79078518 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 8.3:+79079815 | MS.gene020244:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.3:-79078366 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8.3:+79080332 | MS.gene020244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAATTAAAAAAA+TGG | + | chr8.3:79079232-79079251 | MS.gene020244:intron | 10.0% |
| !!! | AAAGTGATTAATTTTATAGT+AGG | - | chr8.3:79079184-79079203 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | - | chr8.3:79079693-79079712 | None:intergenic | 15.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | + | chr8.3:79078753-79078772 | MS.gene020244:CDS | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | + | chr8.3:79079041-79079060 | MS.gene020244:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | + | chr8.3:79079409-79079428 | MS.gene020244:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | + | chr8.3:79079744-79079763 | MS.gene020244:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | - | chr8.3:79078826-79078845 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | + | chr8.3:79079743-79079762 | MS.gene020244:intron | 20.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | + | chr8.3:79079423-79079442 | MS.gene020244:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | + | chr8.3:79080125-79080144 | MS.gene020244:CDS | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | + | chr8.3:79079384-79079403 | MS.gene020244:intron | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | - | chr8.3:79078875-79078894 | None:intergenic | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | + | chr8.3:79080126-79080145 | MS.gene020244:CDS | 25.0% |
| AACAAATGGAGTTGTTATGA+AGG | - | chr8.3:79079902-79079921 | None:intergenic | 30.0% | |
| ATAATGGTGAATATACGGTA+AGG | + | chr8.3:79079414-79079433 | MS.gene020244:intron | 30.0% | |
| CATCCGTTAAAAAGAATCAT+AGG | - | chr8.3:79078759-79078778 | None:intergenic | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | + | chr8.3:79078757-79078776 | MS.gene020244:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | - | chr8.3:79078581-79078600 | None:intergenic | 30.0% |
| !! | TTCACTTGGCTTTATGATAA+TGG | + | chr8.3:79079398-79079417 | MS.gene020244:intron | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | + | chr8.3:79078707-79078726 | MS.gene020244:CDS | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | - | chr8.3:79079222-79079241 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | - | chr8.3:79079223-79079242 | None:intergenic | 30.0% |
| ACATTTCTGACTTAGAATCC+GGG | + | chr8.3:79079812-79079831 | MS.gene020244:CDS | 35.0% | |
| CTAAACTTGCAACTGAAGAT+TGG | - | chr8.3:79078939-79078958 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | + | chr8.3:79078623-79078642 | MS.gene020244:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | - | chr8.3:79078538-79078557 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | + | chr8.3:79078941-79078960 | MS.gene020244:CDS | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | + | chr8.3:79079811-79079830 | MS.gene020244:CDS | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | - | chr8.3:79079811-79079830 | None:intergenic | 35.0% | |
| GCAAAAAGTAACTGTCTGAA+TGG | + | chr8.3:79079295-79079314 | MS.gene020244:intron | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | - | chr8.3:79079277-79079296 | None:intergenic | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | + | chr8.3:79079859-79079878 | MS.gene020244:CDS | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | - | chr8.3:79078615-79078634 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | - | chr8.3:79079278-79079297 | None:intergenic | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | - | chr8.3:79079108-79079127 | None:intergenic | 35.0% | |
| ! | ATGTATTGGCAAGAACAAAC+AGG | + | chr8.3:79078782-79078801 | MS.gene020244:CDS | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | - | chr8.3:79078429-79078448 | None:intergenic | 35.0% |
| ! | CACAGTTCTCATGTGTTTTT+CGG | - | chr8.3:79080172-79080191 | None:intergenic | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | + | chr8.3:79078768-79078787 | MS.gene020244:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | + | chr8.3:79079649-79079668 | MS.gene020244:intron | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | + | chr8.3:79078679-79078698 | MS.gene020244:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | + | chr8.3:79078711-79078730 | MS.gene020244:CDS | 35.0% |
| AAACAGGAGAATGGAAAACC+AGG | + | chr8.3:79078798-79078817 | MS.gene020244:CDS | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | - | chr8.3:79079095-79079114 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | + | chr8.3:79079910-79079929 | MS.gene020244:CDS | 40.0% | |
| ATAGTAGGAATGACACAGTC+AGG | - | chr8.3:79079169-79079188 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | - | chr8.3:79079916-79079935 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | - | chr8.3:79079101-79079120 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | + | chr8.3:79080129-79080148 | MS.gene020244:CDS | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | + | chr8.3:79080170-79080189 | MS.gene020244:CDS | 40.0% | |
| CTTCTGATCTTCCTTCGAAA+AGG | - | chr8.3:79080417-79080436 | None:intergenic | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | - | chr8.3:79078376-79078395 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | + | chr8.3:79078690-79078709 | MS.gene020244:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | + | chr8.3:79078946-79078965 | MS.gene020244:CDS | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | - | chr8.3:79078655-79078674 | None:intergenic | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | + | chr8.3:79080305-79080324 | MS.gene020244:CDS | 40.0% | |
| TTCGAAGGAAGATCAGAAGA+GGG | + | chr8.3:79080418-79080437 | MS.gene020244:CDS | 40.0% | |
| TTTCGAAGGAAGATCAGAAG+AGG | + | chr8.3:79080417-79080436 | MS.gene020244:CDS | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | + | chr8.3:79078372-79078391 | MS.gene020244:CDS | 40.0% |
| ! | TGGTCCAAATATGTTGCTTG+AGG | + | chr8.3:79079101-79079120 | MS.gene020244:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | + | chr8.3:79079139-79079158 | MS.gene020244:intron | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | + | chr8.3:79079921-79079940 | MS.gene020244:CDS | 40.0% |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | + | chr8.3:79078594-79078613 | MS.gene020244:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | + | chr8.3:79079920-79079939 | MS.gene020244:CDS | 40.0% |
| AACTTCGGCAGAGGTTATCA+AGG | - | chr8.3:79078523-79078542 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | + | chr8.3:79078669-79078688 | MS.gene020244:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | + | chr8.3:79079501-79079520 | MS.gene020244:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | + | chr8.3:79079081-79079100 | MS.gene020244:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | - | chr8.3:79079925-79079944 | None:intergenic | 45.0% | |
| ACTGGAATTGAACCGAACAC+TGG | + | chr8.3:79078414-79078433 | MS.gene020244:CDS | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | - | chr8.3:79078522-79078541 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | - | chr8.3:79080096-79080115 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | + | chr8.3:79080276-79080295 | MS.gene020244:CDS | 45.0% | |
| ATACCTAGTCCCCAAAGTAG+CGG | + | chr8.3:79080210-79080229 | MS.gene020244:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | - | chr8.3:79078532-79078551 | None:intergenic | 45.0% | |
| ATGACAAACCCTCCAACAAC+CGG | - | chr8.3:79080255-79080274 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | + | chr8.3:79079506-79079525 | MS.gene020244:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | - | chr8.3:79080091-79080110 | None:intergenic | 45.0% | |
| CATGAGAACTGTGGCTTCTA+CGG | + | chr8.3:79080179-79080198 | MS.gene020244:CDS | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | + | chr8.3:79079502-79079521 | MS.gene020244:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | - | chr8.3:79078370-79078389 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | + | chr8.3:79078853-79078872 | MS.gene020244:CDS | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | + | chr8.3:79080081-79080100 | MS.gene020244:CDS | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | - | chr8.3:79080080-79080099 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | - | chr8.3:79079960-79079979 | None:intergenic | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | + | chr8.3:79078423-79078442 | MS.gene020244:CDS | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | - | chr8.3:79078369-79078388 | None:intergenic | 45.0% | |
| GCATTAGAGATTACTCCCTC+TGG | + | chr8.3:79079204-79079223 | MS.gene020244:intron | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | + | chr8.3:79080424-79080443 | MS.gene020244:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | + | chr8.3:79078789-79078808 | MS.gene020244:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | + | chr8.3:79080270-79080289 | MS.gene020244:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | + | chr8.3:79078471-79078490 | MS.gene020244:CDS | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | - | chr8.3:79078861-79078880 | None:intergenic | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | - | chr8.3:79078371-79078390 | None:intergenic | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | - | chr8.3:79078819-79078838 | None:intergenic | 45.0% | |
| TTTCTGACTTAGAATCCGGG+AGG | + | chr8.3:79079815-79079834 | MS.gene020244:CDS | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | - | chr8.3:79080223-79080242 | None:intergenic | 45.0% |
| ! | ACCAAGGACATGGAGTGTTA+TGG | - | chr8.3:79079085-79079104 | None:intergenic | 45.0% |
| ! | CTACTTTGGGGACTAGGTAT+TGG | - | chr8.3:79080210-79080229 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | - | chr8.3:79080142-79080161 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | - | chr8.3:79078501-79078520 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | + | chr8.3:79078396-79078415 | MS.gene020244:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | + | chr8.3:79078643-79078662 | MS.gene020244:CDS | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | + | chr8.3:79079776-79079795 | MS.gene020244:CDS | 45.0% |
| ! | TTGGAGATCGCCGTATTTTC+AGG | + | chr8.3:79078642-79078661 | MS.gene020244:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | + | chr8.3:79078651-79078670 | MS.gene020244:CDS | 45.0% |
| AATCAACCAAGCTCCTGGGT+TGG | - | chr8.3:79079956-79079975 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | - | chr8.3:79080382-79080401 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | + | chr8.3:79080383-79080402 | MS.gene020244:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | + | chr8.3:79078381-79078400 | MS.gene020244:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | + | chr8.3:79079973-79079992 | MS.gene020244:CDS | 50.0% | |
| CACCAAAGTCTCCGCTACTT+TGG | - | chr8.3:79080224-79080243 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | - | chr8.3:79080018-79080037 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | - | chr8.3:79079505-79079524 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | - | chr8.3:79078903-79078922 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | - | chr8.3:79079961-79079980 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | - | chr8.3:79080315-79080334 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | + | chr8.3:79080084-79080103 | MS.gene020244:CDS | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | - | chr8.3:79079986-79080005 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | + | chr8.3:79079780-79079799 | MS.gene020244:CDS | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | - | chr8.3:79078521-79078540 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | + | chr8.3:79079837-79079856 | MS.gene020244:CDS | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | - | chr8.3:79078633-79078652 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | + | chr8.3:79078663-79078682 | MS.gene020244:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | + | chr8.3:79080285-79080304 | MS.gene020244:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | + | chr8.3:79079969-79079988 | MS.gene020244:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | - | chr8.3:79078737-79078756 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | + | chr8.3:79078380-79078399 | MS.gene020244:CDS | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | - | chr8.3:79079985-79080004 | None:intergenic | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | + | chr8.3:79079781-79079800 | MS.gene020244:CDS | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | + | chr8.3:79078361-79078380 | MS.gene020244:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | + | chr8.3:79078721-79078740 | MS.gene020244:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | + | chr8.3:79078722-79078741 | MS.gene020244:CDS | 50.0% |
| ! | AGACTTTGGTGCACTGAGTC+CGG | + | chr8.3:79080233-79080252 | MS.gene020244:CDS | 50.0% |
| ! | AGGCATGCAAGCCTTTTCGA+AGG | + | chr8.3:79080403-79080422 | MS.gene020244:CDS | 50.0% |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | - | chr8.3:79080222-79080241 | None:intergenic | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | + | chr8.3:79078900-79078919 | MS.gene020244:CDS | 50.0% |
| ! | CGGAACACGTATCTAGGATC+AGG | - | chr8.3:79078855-79078874 | None:intergenic | 50.0% |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | + | chr8.3:79078650-79078669 | MS.gene020244:CDS | 50.0% |
| CAAGATCCAACCCAGGAGCT+TGG | + | chr8.3:79079947-79079966 | MS.gene020244:CDS | 55.0% | |
| CACTGAGTCCGGTTGTTGGA+GGG | + | chr8.3:79080244-79080263 | MS.gene020244:CDS | 55.0% | |
| CCGGGAGGAGAGAGAGAAAA+GGG | + | chr8.3:79079830-79079849 | MS.gene020244:CDS | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | + | chr8.3:79080016-79080035 | MS.gene020244:CDS | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | + | chr8.3:79079510-79079529 | MS.gene020244:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | - | chr8.3:79080395-79080414 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | + | chr8.3:79079833-79079852 | MS.gene020244:CDS | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | + | chr8.3:79080350-79080369 | MS.gene020244:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | - | chr8.3:79078738-79078757 | None:intergenic | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | + | chr8.3:79079829-79079848 | MS.gene020244:CDS | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | + | chr8.3:79079509-79079528 | MS.gene020244:intron | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | - | chr8.3:79080364-79080383 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | + | chr8.3:79079940-79079959 | MS.gene020244:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | + | chr8.3:79078730-79078749 | MS.gene020244:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | + | chr8.3:79078723-79078742 | MS.gene020244:CDS | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | + | chr8.3:79080219-79080238 | MS.gene020244:CDS | 55.0% |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | - | chr8.3:79079833-79079852 | None:intergenic | 55.0% |
| ! | TCTCCGCTACTTTGGGGACT+AGG | - | chr8.3:79080216-79080235 | None:intergenic | 55.0% |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | + | chr8.3:79079989-79080008 | MS.gene020244:CDS | 55.0% |
| ATTGCGACACGTGACGTGCG+TGG | + | chr8.3:79080329-79080348 | MS.gene020244:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | + | chr8.3:79080243-79080262 | MS.gene020244:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | + | chr8.3:79080240-79080259 | MS.gene020244:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | + | chr8.3:79078729-79078748 | MS.gene020244:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | + | chr8.3:79079999-79080018 | MS.gene020244:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | + | chr8.3:79080027-79080046 | MS.gene020244:CDS | 65.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | + | chr8.3:79079998-79080017 | MS.gene020244:CDS | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | + | chr8.3:79080332-79080351 | MS.gene020244:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | - | chr8.3:79080004-79080023 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | + | chr8.3:79080000-79080019 | MS.gene020244:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79078360 | 79080458 | 79078360 | ID=MS.gene020244 |
| chr8.3 | mRNA | 79078360 | 79080458 | 79078360 | ID=MS.gene020244.t1;Parent=MS.gene020244 |
| chr8.3 | exon | 79078360 | 79078967 | 79078360 | ID=MS.gene020244.t1.exon1;Parent=MS.gene020244.t1 |
| chr8.3 | CDS | 79078360 | 79078967 | 79078360 | ID=cds.MS.gene020244.t1;Parent=MS.gene020244.t1 |
| chr8.3 | exon | 79079765 | 79080458 | 79079765 | ID=MS.gene020244.t1.exon2;Parent=MS.gene020244.t1 |
| chr8.3 | CDS | 79079765 | 79080458 | 79079765 | ID=cds.MS.gene020244.t1;Parent=MS.gene020244.t1 |
| Gene Sequence |
| Protein sequence |
