Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021993.t1 | XP_003621527.1 | 98.6 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 1.40E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021993.t1 | Q93YQ3 | 74.8 | 258 | 65 | 0 | 20 | 277 | 19 | 276 | 6.1e-115 | 415.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021993.t1 | G7KR22 | 98.6 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 1.0e-155 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021993 | MS.gene49888 | PPI |
| MS.gene021993 | MS.gene056314 | PPI |
| MS.gene021993 | MS.gene44719 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021993.t1 | MTR_7g016670 | 98.556 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 0.0 | 565 |
| MS.gene021993.t1 | MTR_5g012850 | 72.519 | 262 | 72 | 0 | 21 | 282 | 46 | 307 | 5.22e-144 | 407 |
| MS.gene021993.t1 | MTR_5g012850 | 73.152 | 257 | 69 | 0 | 21 | 277 | 46 | 302 | 2.54e-142 | 405 |
| MS.gene021993.t1 | MTR_5g012850 | 70.940 | 234 | 68 | 0 | 21 | 254 | 46 | 279 | 2.22e-124 | 357 |
| MS.gene021993.t1 | MTR_5g012850 | 72.308 | 195 | 54 | 0 | 21 | 215 | 46 | 240 | 2.75e-105 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021993.t1 | AT5G47435 | 78.279 | 244 | 53 | 0 | 35 | 278 | 34 | 277 | 1.84e-147 | 417 |
| MS.gene021993.t1 | AT5G47435 | 78.279 | 244 | 53 | 0 | 35 | 278 | 34 | 277 | 1.84e-147 | 417 |
| MS.gene021993.t1 | AT4G17360 | 70.567 | 282 | 76 | 2 | 4 | 278 | 1 | 282 | 6.83e-144 | 408 |
| MS.gene021993.t1 | AT4G17360 | 67.984 | 253 | 74 | 2 | 4 | 249 | 1 | 253 | 5.56e-123 | 352 |
| MS.gene021993.t1 | AT4G17360 | 67.580 | 219 | 64 | 2 | 4 | 215 | 1 | 219 | 5.25e-103 | 301 |
Find 73 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCATTTGTTCAATTAT+TGG | 0.175038 | 7.1:-80087029 | None:intergenic |
| GAGGCTGGTGTGAAATTAAT+TGG | 0.276061 | 7.1:+80086966 | MS.gene021993:CDS |
| TGTCGTGAGGGTGCCGGCTC+TGG | 0.286577 | 7.1:+80085533 | MS.gene021993:CDS |
| TAAAAGAGAAGGGGAGATAT+TGG | 0.293953 | 7.1:+80086139 | MS.gene021993:CDS |
| TAAATATAAAATAGCTGTTC+TGG | 0.311791 | 7.1:+80085560 | MS.gene021993:CDS |
| TGAATGCCTGGGAAAGCTTT+AGG | 0.320422 | 7.1:-80085497 | None:intergenic |
| GTAGCTCCGTATAAAGTTTC+CGG | 0.323146 | 7.1:-80086743 | None:intergenic |
| TGGATATCACCTGTGTAATT+AGG | 0.333347 | 7.1:+80085928 | MS.gene021993:CDS |
| TTATATGTAAAGATACTTTC+CGG | 0.343633 | 7.1:+80086724 | MS.gene021993:intron |
| TACTTTCCGGAAACTTTATA+CGG | 0.353184 | 7.1:+80086737 | MS.gene021993:CDS |
| TGTATCCGTGGCCATTTAAC+AGG | 0.358909 | 7.1:-80085459 | None:intergenic |
| TGTTGGTTAATCCCAATACT+TGG | 0.405487 | 7.1:-80084004 | None:intergenic |
| GTCGTGCTTAAATAATGATA+TGG | 0.419817 | 7.1:-80086107 | None:intergenic |
| TGGTTTGTTGCCATCATTCA+AGG | 0.421574 | 7.1:+80086792 | MS.gene021993:CDS |
| GTTTCTGATCTTGTTGCTGT+TGG | 0.432337 | 7.1:-80084021 | None:intergenic |
| AGAACACCAACCTGTTTAGA+TGG | 0.435601 | 7.1:-80086823 | None:intergenic |
| ATCTTGTTGCATTGAATGCC+TGG | 0.441748 | 7.1:-80085509 | None:intergenic |
| GGGTGGTCATCCATCTAAAC+AGG | 0.442035 | 7.1:+80086813 | MS.gene021993:CDS |
| AGAAGAGTATCCCAAGTATT+GGG | 0.442409 | 7.1:+80083993 | MS.gene021993:CDS |
| CGGACCAATAATTGAACAAA+TGG | 0.444593 | 7.1:+80087025 | MS.gene021993:CDS |
| TGATTTATTACATGGATGGC+AGG | 0.448224 | 7.1:+80085890 | MS.gene021993:CDS |
| TGGTAGATCTATTGATTTGA+AGG | 0.453173 | 7.1:-80084048 | None:intergenic |
| TGCCTAGTTGATTTATTACA+TGG | 0.454267 | 7.1:+80085882 | MS.gene021993:CDS |
| AAGAAGAGTATCCCAAGTAT+TGG | 0.477475 | 7.1:+80083992 | MS.gene021993:CDS |
| CAAACGAAAATAAAAGAGAA+GGG | 0.480930 | 7.1:+80086129 | MS.gene021993:CDS |
| AGTACTTGCAAGATATATGC+AGG | 0.491599 | 7.1:+80086187 | MS.gene021993:CDS |
| AGCTGTTCTGGCATCAAAGC+AGG | 0.509131 | 7.1:+80085572 | MS.gene021993:CDS |
| AATGAAAGACGTGGATTCCA+TGG | 0.513588 | 7.1:-80084094 | None:intergenic |
| CTGAGTGATGGTGATGGTAA+TGG | 0.518245 | 7.1:-80084071 | None:intergenic |
| TCATTCACATCTTATTGCTA+AGG | 0.524842 | 7.1:-80087100 | None:intergenic |
| ATTACACAGGTGATATCCAC+TGG | 0.534085 | 7.1:-80085924 | None:intergenic |
| GGTTTGTTGCCATCATTCAA+GGG | 0.536094 | 7.1:+80086793 | MS.gene021993:CDS |
| GGATTTCCTAAAGCTTTCCC+AGG | 0.536655 | 7.1:+80085491 | MS.gene021993:CDS |
| AAGATCTGTCGTGAGGGTGC+CGG | 0.545755 | 7.1:+80085527 | MS.gene021993:CDS |
| TTGATCCTGTTAAATGGCCA+CGG | 0.549392 | 7.1:+80085454 | MS.gene021993:CDS |
| ACAAACGAAAATAAAAGAGA+AGG | 0.549972 | 7.1:+80086128 | MS.gene021993:CDS |
| TGATGGTAATAGGATGCTGT+TGG | 0.554714 | 7.1:+80084271 | MS.gene021993:intron |
| GGAAACTTTATACGGAGCTA+CGG | 0.562360 | 7.1:+80086745 | MS.gene021993:CDS |
| GGGTGTTTGAATCTCTATGA+TGG | 0.563470 | 7.1:-80086052 | None:intergenic |
| ATCTTATTGCTAAGGAAGCA+AGG | 0.568172 | 7.1:-80087092 | None:intergenic |
| TAGTTGATTTATTACATGGA+TGG | 0.568585 | 7.1:+80085886 | MS.gene021993:CDS |
| GTTGGTTAATCCCAATACTT+GGG | 0.570219 | 7.1:-80084003 | None:intergenic |
| GAAACTTTATACGGAGCTAC+GGG | 0.574197 | 7.1:+80086746 | MS.gene021993:CDS |
| AAACGAAAATAAAAGAGAAG+GGG | 0.577193 | 7.1:+80086130 | MS.gene021993:CDS |
| TTATTACATGGATGGCAGGA+TGG | 0.577923 | 7.1:+80085894 | MS.gene021993:CDS |
| GTAATAAATCAACTAGGCAG+TGG | 0.580045 | 7.1:-80085878 | None:intergenic |
| GAATGTATTGCTTCTAGAGG+TGG | 0.580534 | 7.1:+80084313 | MS.gene021993:CDS |
| TCCTCCTCCATCTGTATCCG+TGG | 0.584781 | 7.1:-80085471 | None:intergenic |
| TAGAGAGAGAATGGGCATGG+TGG | 0.585751 | 7.1:+80083968 | None:intergenic |
| TCTGAATGTATTGCTTCTAG+AGG | 0.589573 | 7.1:+80084310 | MS.gene021993:CDS |
| GAAATTTCACCTAATTACAC+AGG | 0.594096 | 7.1:-80085937 | None:intergenic |
| TTGTTGCCATCATTCAAGGG+TGG | 0.596482 | 7.1:+80086796 | MS.gene021993:CDS |
| AGATAGAGAGAGAATGGGCA+TGG | 0.601653 | 7.1:+80083965 | None:intergenic |
| GACATAATTAACATTCACCA+TGG | 0.604754 | 7.1:+80086772 | MS.gene021993:CDS |
| AGTGATGGTGATGGTAATGG+TGG | 0.604759 | 7.1:-80084068 | None:intergenic |
| GGATGACCACCCTTGAATGA+TGG | 0.607929 | 7.1:-80086802 | None:intergenic |
| TCTTGTTGCATTGAATGCCT+GGG | 0.613540 | 7.1:-80085508 | None:intergenic |
| TGCAACAAGATCTGTCGTGA+GGG | 0.615842 | 7.1:+80085521 | MS.gene021993:CDS |
| CCATCACCATCACTCAGCCA+TGG | 0.619563 | 7.1:+80084077 | MS.gene021993:CDS |
| TTATATTTAGGATCCAGAGC+CGG | 0.620524 | 7.1:-80085546 | None:intergenic |
| TGGATTCCATGGCTGAGTGA+TGG | 0.622773 | 7.1:-80084083 | None:intergenic |
| GCCACGGATACAGATGGAGG+AGG | 0.625892 | 7.1:+80085470 | MS.gene021993:CDS |
| ATGCAACAAGATCTGTCGTG+AGG | 0.646975 | 7.1:+80085520 | MS.gene021993:CDS |
| TAAATGGCCACGGATACAGA+TGG | 0.659066 | 7.1:+80085464 | MS.gene021993:CDS |
| GCAGGATGGAAAACTTCCAG+TGG | 0.660520 | 7.1:+80085908 | MS.gene021993:CDS |
| TTTCCAGAAAACGAATCACG+TGG | 0.670975 | 7.1:-80086073 | None:intergenic |
| TGAATGATGGCAACAAACCA+TGG | 0.673075 | 7.1:-80086789 | None:intergenic |
| ATCCATGTAATAAATCAACT+AGG | 0.676918 | 7.1:-80085884 | None:intergenic |
| CCATGGCTGAGTGATGGTGA+TGG | 0.693909 | 7.1:-80084077 | None:intergenic |
| ATGGCCACGGATACAGATGG+AGG | 0.701596 | 7.1:+80085467 | MS.gene021993:CDS |
| TTACAGGGCAATGAAAGACG+TGG | 0.708500 | 7.1:-80084103 | None:intergenic |
| TTCCAGAAAACGAATCACGT+GGG | 0.721846 | 7.1:-80086072 | None:intergenic |
| GTGAGCGAAGAACTTGACAG+CGG | 0.735138 | 7.1:+80087005 | MS.gene021993:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAACAATATTAACAATC+AGG | - | chr7.1:80085730-80085749 | None:intergenic | 15.0% |
| !! | TTGAACTTATTCTTAATATT+TGG | + | chr7.1:80086291-80086310 | MS.gene021993:intron | 15.0% |
| !! | AACACCAATAAATGAATTTA+TGG | + | chr7.1:80085966-80085985 | MS.gene021993:intron | 20.0% |
| !! | TAAAAAACATGTTTATTCTG+AGG | - | chr7.1:80084367-80084386 | None:intergenic | 20.0% |
| !! | TAAATATAAAATAGCTGTTC+TGG | + | chr7.1:80085560-80085579 | MS.gene021993:CDS | 20.0% |
| !! | TTATATGTAAAGATACTTTC+CGG | + | chr7.1:80086724-80086743 | MS.gene021993:intron | 20.0% |
| !!! | AAATTGAATTTGTTTTTGTG+TGG | + | chr7.1:80084243-80084262 | MS.gene021993:intron | 20.0% |
| !!! | ACATGTTTATTAGTTGTTTT+CGG | + | chr7.1:80084806-80084825 | MS.gene021993:intron | 20.0% |
| !!! | AGAACAGCTATTTTATATTT+AGG | - | chr7.1:80085561-80085580 | None:intergenic | 20.0% |
| !!! | ATTTTTCTATACATGTTTCA+TGG | + | chr7.1:80087057-80087076 | MS.gene021993:CDS | 20.0% |
| !!! | CTTAATATTTGGATGATTTT+TGG | + | chr7.1:80086302-80086321 | MS.gene021993:intron | 20.0% |
| !!! | TAAGCTATTTCTATAACAAA+AGG | - | chr7.1:80084916-80084935 | None:intergenic | 20.0% |
| !!! | TTATATGAAACTAACTTTTC+AGG | + | chr7.1:80084616-80084635 | MS.gene021993:intron | 20.0% |
| ! | AAACGAAAATAAAAGAGAAG+GGG | + | chr7.1:80086130-80086149 | MS.gene021993:CDS | 25.0% |
| ! | ACAAACGAAAATAAAAGAGA+AGG | + | chr7.1:80086128-80086147 | MS.gene021993:CDS | 25.0% |
| ! | ACAATAGAATGAACAAAAGA+AGG | - | chr7.1:80084402-80084421 | None:intergenic | 25.0% |
| ! | ACATGTAGACAAATGTTAAA+AGG | - | chr7.1:80086915-80086934 | None:intergenic | 25.0% |
| ! | AGAGCCATAAATTCATTTAT+TGG | - | chr7.1:80085973-80085992 | None:intergenic | 25.0% |
| ! | ATCCATGTAATAAATCAACT+AGG | - | chr7.1:80085887-80085906 | None:intergenic | 25.0% |
| ! | CAAACGAAAATAAAAGAGAA+GGG | + | chr7.1:80086129-80086148 | MS.gene021993:CDS | 25.0% |
| ! | CCTTTATTGAGTTTGAAAAT+GGG | + | chr7.1:80084198-80084217 | MS.gene021993:intron | 25.0% |
| ! | TCAACAAATATCTATCTACA+TGG | - | chr7.1:80085834-80085853 | None:intergenic | 25.0% |
| ! | TCTATCTCTAATTTAGTCTA+TGG | + | chr7.1:80086418-80086437 | MS.gene021993:intron | 25.0% |
| ! | TTCACCATTTGTTCAATTAT+TGG | - | chr7.1:80087032-80087051 | None:intergenic | 25.0% |
| ! | TTTCTATTGGAAATTCGTAA+AGG | + | chr7.1:80084158-80084177 | MS.gene021993:intron | 25.0% |
| !! | ATCTACAGCTTTTATGAAAA+CGG | + | chr7.1:80084875-80084894 | MS.gene021993:intron | 25.0% |
| !! | CCATTTTCAAACTCAATAAA+GGG | - | chr7.1:80084200-80084219 | None:intergenic | 25.0% |
| !! | TAGTTGATTTATTACATGGA+TGG | + | chr7.1:80085886-80085905 | MS.gene021993:CDS | 25.0% |
| !!! | AACATGTTTTTTACTCTAGA+AGG | + | chr7.1:80084374-80084393 | MS.gene021993:CDS | 25.0% |
| !!! | ATACTTTAGGACTAACATAA+TGG | - | chr7.1:80086485-80086504 | None:intergenic | 25.0% |
| !!! | ATATGTTGTATTGTTTTGTC+AGG | + | chr7.1:80086938-80086957 | MS.gene021993:intron | 25.0% |
| !!! | GTTTCTTTGGTTTTTTGAAA+TGG | + | chr7.1:80084220-80084239 | MS.gene021993:intron | 25.0% |
| !!! | TCATTCATGCTTTTTTCTAT+TGG | + | chr7.1:80084145-80084164 | MS.gene021993:intron | 25.0% |
| !!! | TTGTTTTTGATCCTGTTAAA+TGG | + | chr7.1:80085448-80085467 | MS.gene021993:CDS | 25.0% |
| ACGATAAGCAAATGTCAATT+AGG | + | chr7.1:80084699-80084718 | MS.gene021993:intron | 30.0% | |
| AGACTAAATTAGAGATAGAG+TGG | - | chr7.1:80086417-80086436 | None:intergenic | 30.0% | |
| ATCAATGTTGTCTTCATGTT+TGG | + | chr7.1:80084448-80084467 | MS.gene021993:intron | 30.0% | |
| ATCAGAAAGAGCAATAACAA+AGG | - | chr7.1:80086891-80086910 | None:intergenic | 30.0% | |
| ATGAATGAATGTGAATGAGT+GGG | - | chr7.1:80084133-80084152 | None:intergenic | 30.0% | |
| ATTGGAAATTCGTAAAGGAA+TGG | + | chr7.1:80084163-80084182 | MS.gene021993:intron | 30.0% | |
| CAACTATCTTGAATAGCTTA+CGG | - | chr7.1:80084559-80084578 | None:intergenic | 30.0% | |
| CCCTTTATTGAGTTTGAAAA+TGG | + | chr7.1:80084197-80084216 | MS.gene021993:intron | 30.0% | |
| CGATAAGCAAATGTCAATTA+GGG | + | chr7.1:80084700-80084719 | MS.gene021993:intron | 30.0% | |
| GAAATTTCACCTAATTACAC+AGG | - | chr7.1:80085940-80085959 | None:intergenic | 30.0% | |
| GACATAATTAACATTCACCA+TGG | + | chr7.1:80086772-80086791 | MS.gene021993:CDS | 30.0% | |
| GTAATTGAGGGACTAATTTA+TGG | - | chr7.1:80086395-80086414 | None:intergenic | 30.0% | |
| GTCGTGCTTAAATAATGATA+TGG | - | chr7.1:80086110-80086129 | None:intergenic | 30.0% | |
| TACTTTCCGGAAACTTTATA+CGG | + | chr7.1:80086737-80086756 | MS.gene021993:CDS | 30.0% | |
| TCATTCATACTTAACAGCAT+TGG | + | chr7.1:80086700-80086719 | MS.gene021993:intron | 30.0% | |
| ! | AGTTTGAAAATGGGTTTCTT+TGG | + | chr7.1:80084207-80084226 | MS.gene021993:intron | 30.0% |
| ! | ATTATTCTTTCTTTTGCTGC+AGG | + | chr7.1:80085854-80085873 | MS.gene021993:intron | 30.0% |
| ! | CAATAACAAAGGCATAAAAG+TGG | - | chr7.1:80086880-80086899 | None:intergenic | 30.0% |
| ! | CCCATTTTCAAACTCAATAA+AGG | - | chr7.1:80084201-80084220 | None:intergenic | 30.0% |
| ! | CCTATTTTCATAAGTCTTAG+AGG | - | chr7.1:80086355-80086374 | None:intergenic | 30.0% |
| ! | TAATATCATGCAGTCGATTT+CGG | - | chr7.1:80085792-80085811 | None:intergenic | 30.0% |
| ! | TGCCTAGTTGATTTATTACA+TGG | + | chr7.1:80085882-80085901 | MS.gene021993:CDS | 30.0% |
| !! | CCTCTAAGACTTATGAAAAT+AGG | + | chr7.1:80086352-80086371 | MS.gene021993:intron | 30.0% |
| !! | TCAGATCAAAAGTACTAAAG+AGG | - | chr7.1:80084996-80085015 | None:intergenic | 30.0% |
| !! | TGGATGATTTTTGGAAGAAA+TGG | + | chr7.1:80086311-80086330 | MS.gene021993:intron | 30.0% |
| !! | TGGTAGATCTATTGATTTGA+AGG | - | chr7.1:80084051-80084070 | None:intergenic | 30.0% |
| AAGCTATCCTGGAAAACTAA+TGG | - | chr7.1:80084839-80084858 | None:intergenic | 35.0% | |
| AGAGATAGAGTGGTAATTGA+GGG | - | chr7.1:80086407-80086426 | None:intergenic | 35.0% | |
| AGTACTTGCAAGATATATGC+AGG | + | chr7.1:80086187-80086206 | MS.gene021993:CDS | 35.0% | |
| ATACTTGAGGGACTAAATGA+TGG | + | chr7.1:80086624-80086643 | MS.gene021993:intron | 35.0% | |
| ATCTTATTGCTAAGGAAGCA+AGG | - | chr7.1:80087095-80087114 | None:intergenic | 35.0% | |
| CATGAATGAATGTGAATGAG+TGG | - | chr7.1:80084134-80084153 | None:intergenic | 35.0% | |
| CATTGAGATCAATTGGACAT+CGG | - | chr7.1:80085263-80085282 | None:intergenic | 35.0% | |
| CCAAATAAGACAATCCAAAC+AGG | - | chr7.1:80084726-80084745 | None:intergenic | 35.0% | |
| CGGACCAATAATTGAACAAA+TGG | + | chr7.1:80087025-80087044 | MS.gene021993:CDS | 35.0% | |
| GACGAGTTCTCATATACTTT+AGG | - | chr7.1:80086498-80086517 | None:intergenic | 35.0% | |
| GCTAACATTAAGGTCATCTT+TGG | - | chr7.1:80084966-80084985 | None:intergenic | 35.0% | |
| GTAATAAATCAACTAGGCAG+TGG | - | chr7.1:80085881-80085900 | None:intergenic | 35.0% | |
| GTAGAGAAAGTGATACTTGA+GGG | + | chr7.1:80086612-80086631 | MS.gene021993:intron | 35.0% | |
| GTTGGTTAATCCCAATACTT+GGG | - | chr7.1:80084006-80084025 | None:intergenic | 35.0% | |
| TAAAAGAGAAGGGGAGATAT+TGG | + | chr7.1:80086139-80086158 | MS.gene021993:CDS | 35.0% | |
| TAGAGATAGAGTGGTAATTG+AGG | - | chr7.1:80086408-80086427 | None:intergenic | 35.0% | |
| TATATGTTTCCATGACTCCA+TGG | - | chr7.1:80085642-80085661 | None:intergenic | 35.0% | |
| TCTGAATGTATTGCTTCTAG+AGG | + | chr7.1:80084310-80084329 | MS.gene021993:CDS | 35.0% | |
| TGATTTATTACATGGATGGC+AGG | + | chr7.1:80085890-80085909 | MS.gene021993:CDS | 35.0% | |
| TGGATATCACCTGTGTAATT+AGG | + | chr7.1:80085928-80085947 | MS.gene021993:CDS | 35.0% | |
| TGTAGAGAAAGTGATACTTG+AGG | + | chr7.1:80086611-80086630 | MS.gene021993:intron | 35.0% | |
| TTGAATTTGTGTTCTCTGCA+TGG | + | chr7.1:80086221-80086240 | MS.gene021993:intron | 35.0% | |
| ! | CCTGTTTGGATTGTCTTATT+TGG | + | chr7.1:80084723-80084742 | MS.gene021993:intron | 35.0% |
| ! | GAAGACAACATTGATTGTGT+TGG | - | chr7.1:80084443-80084462 | None:intergenic | 35.0% |
| ! | TCAGGTCAACTGATTTAGAT+CGG | - | chr7.1:80085712-80085731 | None:intergenic | 35.0% |
| ! | TGTTGGTTAATCCCAATACT+TGG | - | chr7.1:80084007-80084026 | None:intergenic | 35.0% |
| ! | TTATATTTAGGATCCAGAGC+CGG | - | chr7.1:80085549-80085568 | None:intergenic | 35.0% |
| !! | AAGAAGAGTATCCCAAGTAT+TGG | + | chr7.1:80083992-80084011 | MS.gene021993:CDS | 35.0% |
| !! | AGAAGAGTATCCCAAGTATT+GGG | + | chr7.1:80083993-80084012 | MS.gene021993:CDS | 35.0% |
| !! | ATTGTTTTGTCAGGCTTTTG+AGG | + | chr7.1:80086947-80086966 | MS.gene021993:intron | 35.0% |
| !! | GCCATTGATTCTAGATCAAA+CGG | - | chr7.1:80085770-80085789 | None:intergenic | 35.0% |
| !! | TCACTTTTCATAAGCTATCC+TGG | - | chr7.1:80084850-80084869 | None:intergenic | 35.0% |
| !!! | CGTATTTCCATTAGTTTTCC+AGG | + | chr7.1:80084829-80084848 | MS.gene021993:intron | 35.0% |
| !!! | GTTTTTGTGTGGTTTTGTGA+TGG | + | chr7.1:80084254-80084273 | MS.gene021993:intron | 35.0% |
| !!! | TGTGGTTTTGTGATGGTAAT+AGG | + | chr7.1:80084261-80084280 | MS.gene021993:intron | 35.0% |
| AATGAAAGACGTGGATTCCA+TGG | - | chr7.1:80084097-80084116 | None:intergenic | 40.0% | |
| AATGTCAATTAGGGCCTGTT+TGG | + | chr7.1:80084709-80084728 | MS.gene021993:intron | 40.0% | |
| AGAACACCAACCTGTTTAGA+TGG | - | chr7.1:80086826-80086845 | None:intergenic | 40.0% | |
| AGGCAGACATGCTAACATTA+AGG | - | chr7.1:80084976-80084995 | None:intergenic | 40.0% | |
| ATCTTGTTGCATTGAATGCC+TGG | - | chr7.1:80085512-80085531 | None:intergenic | 40.0% | |
| ATTACACAGGTGATATCCAC+TGG | - | chr7.1:80085927-80085946 | None:intergenic | 40.0% | |
| CTGAGGAACAAAAACATCAG+CGG | - | chr7.1:80084350-80084369 | None:intergenic | 40.0% | |
| GAAACTTTATACGGAGCTAC+GGG | + | chr7.1:80086746-80086765 | MS.gene021993:CDS | 40.0% | |
| GAGGCTGGTGTGAAATTAAT+TGG | + | chr7.1:80086966-80086985 | MS.gene021993:CDS | 40.0% | |
| GCACTCACATTGAGATCAAT+TGG | - | chr7.1:80085270-80085289 | None:intergenic | 40.0% | |
| GGAAACTTTATACGGAGCTA+CGG | + | chr7.1:80086745-80086764 | MS.gene021993:CDS | 40.0% | |
| GGGTGTTTGAATCTCTATGA+TGG | - | chr7.1:80086055-80086074 | None:intergenic | 40.0% | |
| GTAGCTCCGTATAAAGTTTC+CGG | - | chr7.1:80086746-80086765 | None:intergenic | 40.0% | |
| GTTTCTGATCTTGTTGCTGT+TGG | - | chr7.1:80084024-80084043 | None:intergenic | 40.0% | |
| TACACAGTCGTTTACATCCA+TGG | + | chr7.1:80085622-80085641 | MS.gene021993:intron | 40.0% | |
| TCTTGTTGCATTGAATGCCT+GGG | - | chr7.1:80085511-80085530 | None:intergenic | 40.0% | |
| TGAATGATGGCAACAAACCA+TGG | - | chr7.1:80086792-80086811 | None:intergenic | 40.0% | |
| TGATGGTAATAGGATGCTGT+TGG | + | chr7.1:80084271-80084290 | MS.gene021993:intron | 40.0% | |
| TTATTACATGGATGGCAGGA+TGG | + | chr7.1:80085894-80085913 | MS.gene021993:CDS | 40.0% | |
| TTCCAGAAAACGAATCACGT+GGG | - | chr7.1:80086075-80086094 | None:intergenic | 40.0% | |
| TTGATCCTGTTAAATGGCCA+CGG | + | chr7.1:80085454-80085473 | MS.gene021993:CDS | 40.0% | |
| TTTCCAGAAAACGAATCACG+TGG | - | chr7.1:80086076-80086095 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAAAAGTGGCAA+CGG | - | chr7.1:80086874-80086893 | None:intergenic | 40.0% |
| ! | CAACATTGATTGTGTTGGCA+TGG | - | chr7.1:80084438-80084457 | None:intergenic | 40.0% |
| ! | GAATGTATTGCTTCTAGAGG+TGG | + | chr7.1:80084313-80084332 | MS.gene021993:CDS | 40.0% |
| ! | GCCGTTTGATCTAGAATCAA+TGG | + | chr7.1:80085766-80085785 | MS.gene021993:intron | 40.0% |
| !! | AATCGCTAACTACTTTTCCC+TGG | - | chr7.1:80085360-80085379 | None:intergenic | 40.0% |
| !! | ACGTGATTCGTTTTCTGGAA+AGG | + | chr7.1:80086075-80086094 | MS.gene021993:CDS | 40.0% |
| !! | ATTCGTTTTCTGGAAAGGCA+TGG | + | chr7.1:80086080-80086099 | MS.gene021993:CDS | 40.0% |
| !! | GCAGGTACTGACAATCTATT+TGG | + | chr7.1:80085046-80085065 | MS.gene021993:intron | 40.0% |
| !! | GGTTTGTTGCCATCATTCAA+GGG | + | chr7.1:80086793-80086812 | MS.gene021993:CDS | 40.0% |
| !! | TGGTTTGTTGCCATCATTCA+AGG | + | chr7.1:80086792-80086811 | MS.gene021993:CDS | 40.0% |
| ATGCAACAAGATCTGTCGTG+AGG | + | chr7.1:80085520-80085539 | MS.gene021993:CDS | 45.0% | |
| CGTTTACATCCATGGAGTCA+TGG | + | chr7.1:80085630-80085649 | MS.gene021993:intron | 45.0% | |
| CTAAACACACATGCATGCCA+GGG | + | chr7.1:80085340-80085359 | MS.gene021993:intron | 45.0% | |
| GAATGAGTGGGTGACTTACA+GGG | - | chr7.1:80084121-80084140 | None:intergenic | 45.0% | |
| GGATTTCCTAAAGCTTTCCC+AGG | + | chr7.1:80085491-80085510 | MS.gene021993:CDS | 45.0% | |
| GGTCATCCATCTAAACAGGT+TGG | + | chr7.1:80086817-80086836 | MS.gene021993:intron | 45.0% | |
| TAAATGGCCACGGATACAGA+TGG | + | chr7.1:80085464-80085483 | MS.gene021993:CDS | 45.0% | |
| TCTAAACACACATGCATGCC+AGG | + | chr7.1:80085339-80085358 | MS.gene021993:intron | 45.0% | |
| TGAATGAGTGGGTGACTTAC+AGG | - | chr7.1:80084122-80084141 | None:intergenic | 45.0% | |
| TGAATGCCTGGGAAAGCTTT+AGG | - | chr7.1:80085500-80085519 | None:intergenic | 45.0% | |
| TGCAACAAGATCTGTCGTGA+GGG | + | chr7.1:80085521-80085540 | MS.gene021993:CDS | 45.0% | |
| TGTATCCGTGGCCATTTAAC+AGG | - | chr7.1:80085462-80085481 | None:intergenic | 45.0% | |
| TTACAGGGCAATGAAAGACG+TGG | - | chr7.1:80084106-80084125 | None:intergenic | 45.0% | |
| TTGTTGCCATCATTCAAGGG+TGG | + | chr7.1:80086796-80086815 | MS.gene021993:CDS | 45.0% | |
| ! | TTGATTGTGTTGGCATGGCA+TGG | - | chr7.1:80084433-80084452 | None:intergenic | 45.0% |
| !! | AGTGATGGTGATGGTAATGG+TGG | - | chr7.1:80084071-80084090 | None:intergenic | 45.0% |
| !! | CTGAGTGATGGTGATGGTAA+TGG | - | chr7.1:80084074-80084093 | None:intergenic | 45.0% |
| !!! | TTTTGTCAGGCTTTTGAGGC+TGG | + | chr7.1:80086951-80086970 | MS.gene021993:intron | 45.0% |
| AGCTGTTCTGGCATCAAAGC+AGG | + | chr7.1:80085572-80085591 | MS.gene021993:CDS | 50.0% | |
| CTGCTGCGAACGATCTCTAA+GGG | - | chr7.1:80085030-80085049 | None:intergenic | 50.0% | |
| GCAGGATGGAAAACTTCCAG+TGG | + | chr7.1:80085908-80085927 | MS.gene021993:CDS | 50.0% | |
| GGATGACCACCCTTGAATGA+TGG | - | chr7.1:80086805-80086824 | None:intergenic | 50.0% | |
| GGGTGGTCATCCATCTAAAC+AGG | + | chr7.1:80086813-80086832 | MS.gene021993:CDS | 50.0% | |
| GTGAGCGAAGAACTTGACAG+CGG | + | chr7.1:80087005-80087024 | MS.gene021993:CDS | 50.0% | |
| TGGATTCCATGGCTGAGTGA+TGG | - | chr7.1:80084086-80084105 | None:intergenic | 50.0% | |
| ! | CACCCACGTGATTCGTTTTC+TGG | + | chr7.1:80086070-80086089 | MS.gene021993:CDS | 50.0% |
| AACGCAGACGCAGTTACTGC+AGG | - | chr7.1:80085666-80085685 | None:intergenic | 55.0% | |
| ATGGCCACGGATACAGATGG+AGG | + | chr7.1:80085467-80085486 | MS.gene021993:CDS | 55.0% | |
| CCATCACCATCACTCAGCCA+TGG | + | chr7.1:80084077-80084096 | MS.gene021993:CDS | 55.0% | |
| CCTGCTGCGAACGATCTCTA+AGG | - | chr7.1:80085031-80085050 | None:intergenic | 55.0% | |
| CCTTAGAGATCGTTCGCAGC+AGG | + | chr7.1:80085028-80085047 | MS.gene021993:intron | 55.0% | |
| TCCTCCTCCATCTGTATCCG+TGG | - | chr7.1:80085474-80085493 | None:intergenic | 55.0% | |
| ! | AAGATCTGTCGTGAGGGTGC+CGG | + | chr7.1:80085527-80085546 | MS.gene021993:CDS | 55.0% |
| ! | CCATGGCTGAGTGATGGTGA+TGG | - | chr7.1:80084080-80084099 | None:intergenic | 55.0% |
| GCCACGGATACAGATGGAGG+AGG | + | chr7.1:80085470-80085489 | MS.gene021993:CDS | 60.0% | |
| !! | TGTCGTGAGGGTGCCGGCTC+TGG | + | chr7.1:80085533-80085552 | MS.gene021993:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 80083978 | 80087118 | 80083978 | ID=MS.gene021993 |
| chr7.1 | mRNA | 80083978 | 80087118 | 80083978 | ID=MS.gene021993.t1;Parent=MS.gene021993 |
| chr7.1 | exon | 80083978 | 80084121 | 80083978 | ID=MS.gene021993.t1.exon1;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80083978 | 80084121 | 80083978 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80084283 | 80084395 | 80084283 | ID=MS.gene021993.t1.exon2;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80084283 | 80084395 | 80084283 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80085443 | 80085593 | 80085443 | ID=MS.gene021993.t1.exon3;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80085443 | 80085593 | 80085443 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80085876 | 80085949 | 80085876 | ID=MS.gene021993.t1.exon4;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80085876 | 80085949 | 80085876 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80086049 | 80086208 | 80086049 | ID=MS.gene021993.t1.exon5;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80086049 | 80086208 | 80086049 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80086736 | 80086834 | 80086736 | ID=MS.gene021993.t1.exon6;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80086736 | 80086834 | 80086736 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| chr7.1 | exon | 80086960 | 80087118 | 80086960 | ID=MS.gene021993.t1.exon7;Parent=MS.gene021993.t1 |
| chr7.1 | CDS | 80086960 | 80087118 | 80086960 | ID=cds.MS.gene021993.t1;Parent=MS.gene021993.t1 |
| Gene Sequence |
| Protein sequence |
