Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022097.t1 | AAT45084.1 | 99.4 | 491 | 3 | 0 | 1 | 491 | 1 | 491 | 7.40E-279 | 969.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022097.t1 | P92983 | 55.7 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 9.5e-150 | 531.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022097.t1 | Q6JA03 | 99.4 | 491 | 3 | 0 | 1 | 491 | 1 | 491 | 5.4e-279 | 969.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073368 | MS.gene022097 | PPI |
| MS.gene022097 | MS.gene71995 | PPI |
| MS.gene61281 | MS.gene022097 | PPI |
| MS.gene00318 | MS.gene022097 | PPI |
| MS.gene011574 | MS.gene022097 | PPI |
| MS.gene004578 | MS.gene022097 | PPI |
| MS.gene72354 | MS.gene022097 | PPI |
| MS.gene022097 | MS.gene036485 | PPI |
| MS.gene022097 | MS.gene035333 | PPI |
| MS.gene52423 | MS.gene022097 | PPI |
| MS.gene041559 | MS.gene022097 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022097.t1 | MTR_7g020820 | 96.130 | 491 | 19 | 0 | 1 | 491 | 1 | 491 | 0.0 | 988 |
| MS.gene022097.t1 | MTR_6g016635 | 72.912 | 491 | 131 | 2 | 1 | 491 | 1 | 489 | 0.0 | 757 |
| MS.gene022097.t1 | MTR_6g016640 | 72.505 | 491 | 133 | 2 | 1 | 491 | 1 | 489 | 0.0 | 756 |
| MS.gene022097.t1 | MTR_6g016650 | 72.505 | 491 | 133 | 2 | 1 | 491 | 1 | 489 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022097.t1 | AT5G38710 | 55.193 | 491 | 201 | 8 | 1 | 488 | 1 | 475 | 0.0 | 547 |
| MS.gene022097.t1 | AT5G38710 | 54.772 | 482 | 199 | 8 | 1 | 479 | 1 | 466 | 0.0 | 536 |
| MS.gene022097.t1 | AT3G30775 | 55.711 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 0.0 | 525 |
| MS.gene022097.t1 | AT3G30775 | 55.711 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 0.0 | 525 |
Find 132 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTCTTCTGCAGTTAA+TGG | 0.184815 | 7.1:+77507567 | None:intergenic |
| GCAAGCCAATATTCCATTAT+TGG | 0.192056 | 7.1:-77507493 | MS.gene022097:CDS |
| ATCAAAGGCTGCTGAGAAAA+TGG | 0.229693 | 7.1:-77507325 | MS.gene022097:CDS |
| CCCAATTCATAACACTATTA+AGG | 0.230442 | 7.1:-77507220 | MS.gene022097:CDS |
| GCTGCAAAAGCACATGAATT+AGG | 0.242107 | 7.1:-77506987 | MS.gene022097:CDS |
| AAGAAAATTGGCTGCTGATT+TGG | 0.264569 | 7.1:-77507253 | MS.gene022097:CDS |
| CGGAGTTTCCTTAGAATTCT+TGG | 0.272400 | 7.1:+77508837 | None:intergenic |
| TCCTTAATAGTGTTATGAAT+TGG | 0.289267 | 7.1:+77507219 | None:intergenic |
| ATGGAATTTGCACAACTATA+TGG | 0.300041 | 7.1:-77506942 | MS.gene022097:CDS |
| AGAAAATTGGCTGCTGATTT+GGG | 0.316393 | 7.1:-77507252 | MS.gene022097:CDS |
| CCTTAATAGTGTTATGAATT+GGG | 0.317863 | 7.1:+77507220 | None:intergenic |
| ATCAACCAATAATGGAATAT+TGG | 0.323034 | 7.1:+77507488 | None:intergenic |
| GGCAGTTGATTTGAGAAGTT+TGG | 0.328394 | 7.1:+77508644 | None:intergenic |
| TGCTCAGCATCAACCAATAA+TGG | 0.345577 | 7.1:+77507480 | None:intergenic |
| CGACGCCGAGCTCAACTTCC+AGG | 0.345795 | 7.1:-77508700 | MS.gene022097:CDS |
| GGACTTGACTCAGAGAAAAT+TGG | 0.349772 | 7.1:+77507618 | None:intergenic |
| GTTGTGCAAATTCCATCTTA+TGG | 0.359595 | 7.1:+77506949 | None:intergenic |
| TATGTCTAGTGAAAGAAAAT+TGG | 0.367109 | 7.1:-77507265 | MS.gene022097:CDS |
| ATGGGATTTAAGTTGGTTAG+AGG | 0.368900 | 7.1:-77507294 | MS.gene022097:CDS |
| GGTGAAAACCCTATTGTGTT+TGG | 0.368909 | 7.1:-77507396 | MS.gene022097:CDS |
| TCCTTTGGTTTGAGCAATGC+AGG | 0.373818 | 7.1:-77506903 | MS.gene022097:CDS |
| TGAATGGTTCCAAACACAAT+AGG | 0.377372 | 7.1:+77507387 | None:intergenic |
| ATGTCTGAGGCACTATCCTT+TGG | 0.385476 | 7.1:-77506918 | MS.gene022097:CDS |
| AATGTTACGTAAAGGATTAT+TGG | 0.386279 | 7.1:+77508548 | None:intergenic |
| AACCAGCATTCCACGTAAAC+CGG | 0.387024 | 7.1:+77508431 | None:intergenic |
| CGAGGTGAGGGCGGGTTGGA+AGG | 0.397110 | 7.1:+77508794 | None:intergenic |
| TAATCCCACCAAGAATTCTA+AGG | 0.403070 | 7.1:-77508845 | MS.gene022097:CDS |
| AGGAGGGTTGTTGTTGATGA+TGG | 0.408506 | 7.1:+77508729 | None:intergenic |
| CTGCAAAAGCACATGAATTA+GGG | 0.409429 | 7.1:-77506986 | MS.gene022097:CDS |
| TCTTCTGCAGTTAATGGCTC+TGG | 0.411211 | 7.1:+77507573 | None:intergenic |
| GCTCTGGTCTCTTCCTTGTA+TGG | 0.417428 | 7.1:+77507589 | None:intergenic |
| TTACGTGGAATGCTGGTTTA+CGG | 0.420959 | 7.1:-77508426 | MS.gene022097:CDS |
| GCAACTCATAACATTGAATC+AGG | 0.421031 | 7.1:-77507120 | MS.gene022097:intron |
| GTTAGCAAGTATATGCCATT+TGG | 0.425364 | 7.1:-77506873 | MS.gene022097:CDS |
| TTCCATGGTAAAACAAATGA+AGG | 0.426713 | 7.1:+77507654 | None:intergenic |
| ATTTGAGAAGTTTGGTGGTT+GGG | 0.430666 | 7.1:+77508652 | None:intergenic |
| TCAAAGGCTGCTGAGAAAAT+GGG | 0.431171 | 7.1:-77507324 | MS.gene022097:CDS |
| AGAGGAGTGTTGGCTGCATC+AGG | 0.432114 | 7.1:-77506801 | MS.gene022097:CDS |
| GAATGGTTCCAAACACAATA+GGG | 0.432754 | 7.1:+77507388 | None:intergenic |
| GATACCAATGGGATTTAAGT+TGG | 0.434398 | 7.1:-77507301 | MS.gene022097:CDS |
| ATTCTTTCTAGCAAACTCAT+TGG | 0.435303 | 7.1:+77507708 | None:intergenic |
| AGCGAGAGCGGGCGAGGTGA+GGG | 0.443290 | 7.1:+77508782 | None:intergenic |
| ATGCTTGAGAAGATTGCTAA+TGG | 0.443947 | 7.1:-77507162 | MS.gene022097:CDS |
| GAGGTGAGGGCGGGTTGGAA+GGG | 0.450540 | 7.1:+77508795 | None:intergenic |
| GCTCGGCGTCGGGAGGGAGG+AGG | 0.454095 | 7.1:+77508712 | None:intergenic |
| TGGAAGTTGAGCTCGGCGTC+GGG | 0.458380 | 7.1:+77508702 | None:intergenic |
| GGCAATGAATCTTGCTTCCA+TGG | 0.463585 | 7.1:+77507639 | None:intergenic |
| CGGGCGAGGTGAGGGCGGGT+TGG | 0.468628 | 7.1:+77508790 | None:intergenic |
| GAGAATGTTGTTGGCATCAA+AGG | 0.469497 | 7.1:-77507340 | MS.gene022097:CDS |
| TGGTCTAAAATATTAGATGT+AGG | 0.469789 | 7.1:+77508759 | None:intergenic |
| AGCCGGTTTACGTGGAATGC+TGG | 0.481169 | 7.1:-77508433 | MS.gene022097:CDS |
| TGCTAAGGAGAGAATGTTGT+TGG | 0.483046 | 7.1:-77507349 | MS.gene022097:CDS |
| GACTTATTTGAAAGATGCTA+AGG | 0.483282 | 7.1:-77507364 | MS.gene022097:CDS |
| TGTAGGAGCGAGAGCGGGCG+AGG | 0.484035 | 7.1:+77508776 | None:intergenic |
| GAATGAGTGATTTGCTAAGA+TGG | 0.485997 | 7.1:-77507689 | MS.gene022097:CDS |
| GAGAAAATGGGGATACCAAT+GGG | 0.487127 | 7.1:-77507312 | MS.gene022097:CDS |
| TGGCTGCATCAGGCTTTGAC+AGG | 0.489064 | 7.1:-77506791 | MS.gene022097:CDS |
| ATCTTTCAAATAAGTCTGAA+TGG | 0.490946 | 7.1:+77507371 | None:intergenic |
| CAAGTCCTTTGTACCATACA+AGG | 0.491199 | 7.1:-77507602 | MS.gene022097:CDS |
| AATTCTTGGTGGGATTACTC+TGG | 0.492199 | 7.1:+77508851 | None:intergenic |
| CAATGGTTGACCTCGGTACA+TGG | 0.496298 | 7.1:-77508596 | MS.gene022097:CDS |
| CTCGGCGTCGGGAGGGAGGA+GGG | 0.497150 | 7.1:+77508713 | None:intergenic |
| CTGGAAGTTGAGCTCGGCGT+CGG | 0.500549 | 7.1:+77508701 | None:intergenic |
| AAAGAAGAGATTACCGAAGA+TGG | 0.501243 | 7.1:+77508318 | None:intergenic |
| TGCTACCGCGGTCGAGCCAA+TGG | 0.505880 | 7.1:-77508613 | MS.gene022097:CDS |
| CAGATCGCTTCCTCCATCTT+CGG | 0.508348 | 7.1:-77508331 | MS.gene022097:intron |
| AAAGCACATGAATTAGGGAT+TGG | 0.508788 | 7.1:-77506981 | MS.gene022097:CDS |
| AGAAGGGCTGAGGAGAATAG+AGG | 0.509588 | 7.1:-77506819 | MS.gene022097:CDS |
| ACAGTCTCCACAGGACCAAA+TGG | 0.512639 | 7.1:+77506858 | None:intergenic |
| TCCTTTACGTAACATTGCTA+TGG | 0.513932 | 7.1:-77508541 | MS.gene022097:CDS |
| TAAGTAAAGTAATCAATAGC+AGG | 0.514940 | 7.1:+77507444 | None:intergenic |
| GTAACAGGAAGGAGTTGGTC+AGG | 0.515317 | 7.1:-77506684 | MS.gene022097:intron |
| TGGAAAGGTGAACCATAAGA+TGG | 0.519633 | 7.1:-77506961 | MS.gene022097:CDS |
| AGTTGAGCTCGGCGTCGGGA+GGG | 0.523522 | 7.1:+77508706 | None:intergenic |
| GACGTCCTGGAAGTTGAGCT+CGG | 0.525511 | 7.1:+77508695 | None:intergenic |
| GAGAAGATTGCTAATGGTCC+TGG | 0.526190 | 7.1:-77507156 | MS.gene022097:CDS |
| AGAGCGGGCGAGGTGAGGGC+GGG | 0.530587 | 7.1:+77508786 | None:intergenic |
| TTGAATGAAGCCGGTTTACG+TGG | 0.536980 | 7.1:-77508441 | MS.gene022097:CDS |
| AAGTTGAGCTCGGCGTCGGG+AGG | 0.542028 | 7.1:+77508705 | None:intergenic |
| CTTAATAGTGTTATGAATTG+GGG | 0.542738 | 7.1:+77507221 | None:intergenic |
| TCTTGGTGGGATTACTCTGG+TGG | 0.544261 | 7.1:+77508854 | None:intergenic |
| TGAGCTCGGCGTCGGGAGGG+AGG | 0.546223 | 7.1:+77508709 | None:intergenic |
| TGAGGAGAATAGAGGAGTGT+TGG | 0.546299 | 7.1:-77506811 | MS.gene022097:CDS |
| TTGGCTCGACCGCGGTAGCA+TGG | 0.546822 | 7.1:+77508616 | None:intergenic |
| AGTTGATTTGAGAAGTTTGG+TGG | 0.547853 | 7.1:+77508647 | None:intergenic |
| GAGCGAGAGCGGGCGAGGTG+AGG | 0.548525 | 7.1:+77508781 | None:intergenic |
| CCTTTGGTTTGAGCAATGCA+GGG | 0.548586 | 7.1:-77506902 | MS.gene022097:CDS |
| AGCGGTGATAGCATCTTCTC+CGG | 0.551973 | 7.1:+77508482 | None:intergenic |
| GAGAGCGGGCGAGGTGAGGG+CGG | 0.552198 | 7.1:+77508785 | None:intergenic |
| CTCTTCCTTGTATGGTACAA+AGG | 0.552313 | 7.1:+77507597 | None:intergenic |
| AGGGTTGTTGTTGATGATGG+CGG | 0.552780 | 7.1:+77508732 | None:intergenic |
| TCAGCCCTTCTCAAGAGGTA+TGG | 0.555676 | 7.1:+77506831 | None:intergenic |
| CTAACCAACTTAAATCCCAT+TGG | 0.556156 | 7.1:+77507297 | None:intergenic |
| GGCTGTGATCGCAATCTCAA+AGG | 0.556621 | 7.1:-77508378 | MS.gene022097:CDS |
| GCCATAGCAATGTTACGTAA+AGG | 0.557815 | 7.1:+77508540 | None:intergenic |
| TTAGATGTAGGAGCGAGAGC+GGG | 0.558178 | 7.1:+77508771 | None:intergenic |
| GGAGAAGATGCTATCACCGC+TGG | 0.558734 | 7.1:-77508480 | MS.gene022097:CDS |
| TGAGAAAATGGGGATACCAA+TGG | 0.562625 | 7.1:-77507313 | MS.gene022097:CDS |
| ACCTCGGTACATGGATGTTG+AGG | 0.563108 | 7.1:-77508587 | MS.gene022097:CDS |
| ATACCTCTTGAGAAGGGCTG+AGG | 0.568530 | 7.1:-77506829 | MS.gene022097:CDS |
| ATTGCCGGGTTGAATGAAGC+CGG | 0.569365 | 7.1:-77508450 | MS.gene022097:CDS |
| TTATGCCATACCTCTTGAGA+AGG | 0.578455 | 7.1:-77506836 | MS.gene022097:CDS |
| ATTAGATGTAGGAGCGAGAG+CGG | 0.579230 | 7.1:+77508770 | None:intergenic |
| CCCTGCATTGCTCAAACCAA+AGG | 0.579950 | 7.1:+77506902 | None:intergenic |
| GTTTCCTTAGAATTCTTGGT+GGG | 0.589566 | 7.1:+77508841 | None:intergenic |
| TCTCCTCAGCCCTTCTCAAG+AGG | 0.589935 | 7.1:+77506826 | None:intergenic |
| GTATATGCCATTTGGTCCTG+TGG | 0.591190 | 7.1:-77506865 | MS.gene022097:CDS |
| GATTTGAGAAGTTTGGTGGT+TGG | 0.596318 | 7.1:+77508651 | None:intergenic |
| TGTGTGTAACAGGAAGGAGT+TGG | 0.596944 | 7.1:-77506689 | MS.gene022097:intron |
| CACATTTCTGACAAAGCTCA+AGG | 0.598840 | 7.1:+77507517 | None:intergenic |
| CAAAGGCTGCTGAGAAAATG+GGG | 0.601355 | 7.1:-77507323 | MS.gene022097:CDS |
| CATGTACCGAGGTCAACCAT+TGG | 0.607494 | 7.1:+77508597 | None:intergenic |
| GACCGCGGTAGCATGGAGGA+TGG | 0.611857 | 7.1:+77508623 | None:intergenic |
| TGCCATCCTCCATGCTACCG+CGG | 0.616863 | 7.1:-77508625 | MS.gene022097:CDS |
| AGTTTCCTTAGAATTCTTGG+TGG | 0.617238 | 7.1:+77508840 | None:intergenic |
| AAGCGATCTGCTGACATCAA+CGG | 0.628709 | 7.1:+77508344 | None:intergenic |
| GAAGAGATTACCGAAGATGG+AGG | 0.632295 | 7.1:+77508321 | None:intergenic |
| GTCGAGCCAATGGTTGACCT+CGG | 0.632405 | 7.1:-77508603 | MS.gene022097:CDS |
| GTCAACCATTGGCTCGACCG+CGG | 0.635474 | 7.1:+77508608 | None:intergenic |
| GCTTTGACAGGCAACTGATG+AGG | 0.640989 | 7.1:-77506779 | MS.gene022097:intron |
| TCCATGGTAAAACAAATGAA+GGG | 0.647799 | 7.1:+77507655 | None:intergenic |
| TATGCCATACCTCTTGAGAA+GGG | 0.652837 | 7.1:-77506835 | MS.gene022097:CDS |
| TATGGCATAACAGTCTCCAC+AGG | 0.658251 | 7.1:+77506849 | None:intergenic |
| TCTGCTATTATGCATAACAA+AGG | 0.660959 | 7.1:-77507417 | MS.gene022097:CDS |
| ACATGAATTAGGGATTGGAA+AGG | 0.662252 | 7.1:-77506976 | MS.gene022097:CDS |
| GAAGATGCTCATGATAACGC+TGG | 0.669461 | 7.1:-77508399 | MS.gene022097:CDS |
| AAGATTGCTAATGGTCCTGG+TGG | 0.669644 | 7.1:-77507153 | MS.gene022097:CDS |
| GTTGCAAGAACAACTCCACC+AGG | 0.681012 | 7.1:+77507138 | None:intergenic |
| ACAACTATATGGAATGTCTG+AGG | 0.702468 | 7.1:-77506931 | MS.gene022097:CDS |
| GCTCGACCGCGGTAGCATGG+AGG | 0.710481 | 7.1:+77508619 | None:intergenic |
| ACCTCAACATCCATGTACCG+AGG | 0.713651 | 7.1:+77508586 | None:intergenic |
| TAAACCGGCTTCATTCAACC+CGG | 0.724383 | 7.1:+77508446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATGTTGTTTTGTAT+AGG | - | chr7.1:77508498-77508517 | MS.gene022097:CDS | 15.0% |
| !! | AAAAATAGGTTATGAATTTG+AGG | - | chr7.1:77507667-77507686 | MS.gene022097:CDS | 20.0% |
| !! | AAAATAGGTTATGAATTTGA+GGG | - | chr7.1:77507668-77507687 | MS.gene022097:CDS | 20.0% |
| !! | CACAGAAAAAAAGTTTAATT+TGG | + | chr7.1:77507749-77507768 | None:intergenic | 20.0% |
| !! | TAATGTATATATGCAATTGA+GGG | - | chr7.1:77508461-77508480 | MS.gene022097:CDS | 20.0% |
| !! | TTAATGTATATATGCAATTG+AGG | - | chr7.1:77508460-77508479 | MS.gene022097:CDS | 20.0% |
| !!! | AACAAACAAACAATTGTTTT+TGG | - | chr7.1:77507555-77507574 | MS.gene022097:CDS | 20.0% |
| !!! | GTTTTCTTTTTTTGCTTTTT+TGG | - | chr7.1:77507252-77507271 | MS.gene022097:CDS | 20.0% |
| !!! | TAAACTTTTTTTCTGTGTAT+AGG | - | chr7.1:77507752-77507771 | MS.gene022097:intron | 20.0% |
| ! | AAATAGGTTATGAATTTGAG+GGG | - | chr7.1:77507669-77507688 | MS.gene022097:CDS | 25.0% |
| ! | AATGAAAAGAAAACTAAGCA+TGG | - | chr7.1:77507457-77507476 | MS.gene022097:CDS | 25.0% |
| ! | AATGTATATATGCAATTGAG+GGG | - | chr7.1:77508462-77508481 | MS.gene022097:CDS | 25.0% |
| ! | AATGTTACGTAAAGGATTAT+TGG | + | chr7.1:77506973-77506992 | None:intergenic | 25.0% |
| ! | ACAAAAATGATCGAAAAAAG+TGG | + | chr7.1:77507015-77507034 | None:intergenic | 25.0% |
| ! | ATCTTTCAAATAAGTCTGAA+TGG | + | chr7.1:77508150-77508169 | None:intergenic | 25.0% |
| ! | CCTTAATAGTGTTATGAATT+GGG | + | chr7.1:77508301-77508320 | None:intergenic | 25.0% |
| ! | CTTAATAGTGTTATGAATTG+GGG | + | chr7.1:77508300-77508319 | None:intergenic | 25.0% |
| ! | TAAGTAAAGTAATCAATAGC+AGG | + | chr7.1:77508077-77508096 | None:intergenic | 25.0% |
| ! | TATGTCTAGTGAAAGAAAAT+TGG | - | chr7.1:77508253-77508272 | MS.gene022097:intron | 25.0% |
| ! | TCCTTAATAGTGTTATGAAT+TGG | + | chr7.1:77508302-77508321 | None:intergenic | 25.0% |
| !! | ATCAACCAATAATGGAATAT+TGG | + | chr7.1:77508033-77508052 | None:intergenic | 25.0% |
| !! | TGGTCTAAAATATTAGATGT+AGG | + | chr7.1:77506762-77506781 | None:intergenic | 25.0% |
| !!! | CTTTTTTTGCTTTTTTGGTT+CGG | - | chr7.1:77507257-77507276 | MS.gene022097:CDS | 25.0% |
| !!! | GTTGTTTTGTATAGGAAAAT+TGG | - | chr7.1:77508506-77508525 | MS.gene022097:CDS | 25.0% |
| AAATCAATCAAAGCATGGAT+TGG | - | chr7.1:77507507-77507526 | MS.gene022097:CDS | 30.0% | |
| ATGGAATTTGCACAACTATA+TGG | - | chr7.1:77508576-77508595 | MS.gene022097:CDS | 30.0% | |
| CCCAATTCATAACACTATTA+AGG | - | chr7.1:77508298-77508317 | MS.gene022097:intron | 30.0% | |
| CGGTTATTCTCAATTGAATT+TGG | + | chr7.1:77507328-77507347 | None:intergenic | 30.0% | |
| GACTTATTTGAAAGATGCTA+AGG | - | chr7.1:77508154-77508173 | MS.gene022097:intron | 30.0% | |
| TCATGAAATCAATCAAAGCA+TGG | - | chr7.1:77507502-77507521 | MS.gene022097:CDS | 30.0% | |
| TCCATGGTAAAACAAATGAA+GGG | + | chr7.1:77507866-77507885 | None:intergenic | 30.0% | |
| TCTGCTATTATGCATAACAA+AGG | - | chr7.1:77508101-77508120 | MS.gene022097:intron | 30.0% | |
| TTCCATGGTAAAACAAATGA+AGG | + | chr7.1:77507867-77507886 | None:intergenic | 30.0% | |
| ! | ATTCTTTCTAGCAAACTCAT+TGG | + | chr7.1:77507813-77507832 | None:intergenic | 30.0% |
| ! | ATTGAGAATAACCGTTTTCA+TGG | - | chr7.1:77507334-77507353 | MS.gene022097:CDS | 30.0% |
| ! | TAGTTTTCTTTTCATTCCTC+AGG | + | chr7.1:77507453-77507472 | None:intergenic | 30.0% |
| !! | TTTTTCGATCATTTTTGTGC+CGG | - | chr7.1:77507017-77507036 | MS.gene022097:intron | 30.0% |
| !!! | GAATTTGTTTTGTGTGTAAC+AGG | - | chr7.1:77508819-77508838 | MS.gene022097:CDS | 30.0% |
| AAAGAAGAGATTACCGAAGA+TGG | + | chr7.1:77507203-77507222 | None:intergenic | 35.0% | |
| AAAGCACATGAATTAGGGAT+TGG | - | chr7.1:77508537-77508556 | MS.gene022097:CDS | 35.0% | |
| AACCGCAATTTAATAGACGT+TGG | - | chr7.1:77507382-77507401 | MS.gene022097:CDS | 35.0% | |
| ACAACTATATGGAATGTCTG+AGG | - | chr7.1:77508587-77508606 | MS.gene022097:CDS | 35.0% | |
| ACATGAATTAGGGATTGGAA+AGG | - | chr7.1:77508542-77508561 | MS.gene022097:CDS | 35.0% | |
| AGAGATGCAATCTGCTTTAA+TGG | - | chr7.1:77507300-77507319 | MS.gene022097:CDS | 35.0% | |
| AGTTTCCTTAGAATTCTTGG+TGG | + | chr7.1:77506681-77506700 | None:intergenic | 35.0% | |
| ATGCTTGAGAAGATTGCTAA+TGG | - | chr7.1:77508356-77508375 | MS.gene022097:CDS | 35.0% | |
| CAATGGAAATGGAATGGAAT+TGG | - | chr7.1:77507532-77507551 | MS.gene022097:CDS | 35.0% | |
| CACCAACGTCTATTAAATTG+CGG | + | chr7.1:77507387-77507406 | None:intergenic | 35.0% | |
| CAGAAAAAAACTGTGGTTGA+TGG | - | chr7.1:77507608-77507627 | MS.gene022097:CDS | 35.0% | |
| CTAACCAACTTAAATCCCAT+TGG | + | chr7.1:77508224-77508243 | None:intergenic | 35.0% | |
| GAAAACTAAGCATGGAACAA+TGG | - | chr7.1:77507465-77507484 | MS.gene022097:CDS | 35.0% | |
| GAATGGTTCCAAACACAATA+GGG | + | chr7.1:77508133-77508152 | None:intergenic | 35.0% | |
| GATACCAATGGGATTTAAGT+TGG | - | chr7.1:77508217-77508236 | MS.gene022097:intron | 35.0% | |
| GCAACTCATAACATTGAATC+AGG | - | chr7.1:77508398-77508417 | MS.gene022097:CDS | 35.0% | |
| GCAAGCCAATATTCCATTAT+TGG | - | chr7.1:77508025-77508044 | MS.gene022097:intron | 35.0% | |
| GTTAGCAAGTATATGCCATT+TGG | - | chr7.1:77508645-77508664 | MS.gene022097:CDS | 35.0% | |
| GTTGTGCAAATTCCATCTTA+TGG | + | chr7.1:77508572-77508591 | None:intergenic | 35.0% | |
| GTTTCCTTAGAATTCTTGGT+GGG | + | chr7.1:77506680-77506699 | None:intergenic | 35.0% | |
| TAAGCATGGAACAATGGAAT+TGG | - | chr7.1:77507471-77507490 | MS.gene022097:CDS | 35.0% | |
| TAATCCCACCAAGAATTCTA+AGG | - | chr7.1:77506673-77506692 | MS.gene022097:CDS | 35.0% | |
| TCCTTTACGTAACATTGCTA+TGG | - | chr7.1:77506977-77506996 | MS.gene022097:CDS | 35.0% | |
| TGAATGGTTCCAAACACAAT+AGG | + | chr7.1:77508134-77508153 | None:intergenic | 35.0% | |
| TTGGAACAATGGAAATGGAA+TGG | - | chr7.1:77507526-77507545 | MS.gene022097:CDS | 35.0% | |
| ! | AAGAAAATTGGCTGCTGATT+TGG | - | chr7.1:77508265-77508284 | MS.gene022097:intron | 35.0% |
| ! | ATTTGAGAAGTTTGGTGGTT+GGG | + | chr7.1:77506869-77506888 | None:intergenic | 35.0% |
| ! | CTGCAAAAGCACATGAATTA+GGG | - | chr7.1:77508532-77508551 | MS.gene022097:CDS | 35.0% |
| !! | AGAAAATTGGCTGCTGATTT+GGG | - | chr7.1:77508266-77508285 | MS.gene022097:intron | 35.0% |
| !! | AGTTGATTTGAGAAGTTTGG+TGG | + | chr7.1:77506874-77506893 | None:intergenic | 35.0% |
| !! | ATGGATTGGAACAATGGAAA+TGG | - | chr7.1:77507521-77507540 | MS.gene022097:CDS | 35.0% |
| !! | ATGGGATTTAAGTTGGTTAG+AGG | - | chr7.1:77508224-77508243 | MS.gene022097:intron | 35.0% |
| !! | GAATGAGTGATTTGCTAAGA+TGG | - | chr7.1:77507829-77507848 | MS.gene022097:intron | 35.0% |
| !! | TTGTTTTGTGTGTAACAGGA+AGG | - | chr7.1:77508823-77508842 | MS.gene022097:CDS | 35.0% |
| !!! | AACCACAGTTTTTTTCTGTG+TGG | + | chr7.1:77507606-77507625 | None:intergenic | 35.0% |
| !!! | ACCCTTCATTTGTTTTACCA+TGG | - | chr7.1:77507862-77507881 | MS.gene022097:intron | 35.0% |
| AATTCTTGGTGGGATTACTC+TGG | + | chr7.1:77506670-77506689 | None:intergenic | 40.0% | |
| AGCCACACAGAAAAAAACTG+TGG | - | chr7.1:77507601-77507620 | MS.gene022097:CDS | 40.0% | |
| ATCAAAGGCTGCTGAGAAAA+TGG | - | chr7.1:77508193-77508212 | MS.gene022097:intron | 40.0% | |
| CAAGTCCTTTGTACCATACA+AGG | - | chr7.1:77507916-77507935 | MS.gene022097:intron | 40.0% | |
| CACATTTCTGACAAAGCTCA+AGG | + | chr7.1:77508004-77508023 | None:intergenic | 40.0% | |
| CGGAGTTTCCTTAGAATTCT+TGG | + | chr7.1:77506684-77506703 | None:intergenic | 40.0% | |
| CTCTCTTCTTCTGCAGTTAA+TGG | + | chr7.1:77507954-77507973 | None:intergenic | 40.0% | |
| CTCTTCCTTGTATGGTACAA+AGG | + | chr7.1:77507924-77507943 | None:intergenic | 40.0% | |
| GAGAAAATGGGGATACCAAT+GGG | - | chr7.1:77508206-77508225 | MS.gene022097:intron | 40.0% | |
| GAGAATGTTGTTGGCATCAA+AGG | - | chr7.1:77508178-77508197 | MS.gene022097:intron | 40.0% | |
| GCCATAGCAATGTTACGTAA+AGG | + | chr7.1:77506981-77507000 | None:intergenic | 40.0% | |
| GGACTTGACTCAGAGAAAAT+TGG | + | chr7.1:77507903-77507922 | None:intergenic | 40.0% | |
| GGTGAAAACCCTATTGTGTT+TGG | - | chr7.1:77508122-77508141 | MS.gene022097:intron | 40.0% | |
| TATGCCATACCTCTTGAGAA+GGG | - | chr7.1:77508683-77508702 | MS.gene022097:CDS | 40.0% | |
| TCAAAGGCTGCTGAGAAAAT+GGG | - | chr7.1:77508194-77508213 | MS.gene022097:intron | 40.0% | |
| TGAGAAAATGGGGATACCAA+TGG | - | chr7.1:77508205-77508224 | MS.gene022097:intron | 40.0% | |
| TGCTAAGGAGAGAATGTTGT+TGG | - | chr7.1:77508169-77508188 | MS.gene022097:intron | 40.0% | |
| TGCTCAGCATCAACCAATAA+TGG | + | chr7.1:77508041-77508060 | None:intergenic | 40.0% | |
| TGGAAAGGTGAACCATAAGA+TGG | - | chr7.1:77508557-77508576 | MS.gene022097:CDS | 40.0% | |
| TTATGCCATACCTCTTGAGA+AGG | - | chr7.1:77508682-77508701 | MS.gene022097:CDS | 40.0% | |
| ! | GATTTGAGAAGTTTGGTGGT+TGG | + | chr7.1:77506870-77506889 | None:intergenic | 40.0% |
| ! | GCTGCAAAAGCACATGAATT+AGG | - | chr7.1:77508531-77508550 | MS.gene022097:CDS | 40.0% |
| !! | AAAAGAGTTTTTCGACGTCC+TGG | + | chr7.1:77506839-77506858 | None:intergenic | 40.0% |
| !! | CAAAGCATGGATTGGAACAA+TGG | - | chr7.1:77507515-77507534 | MS.gene022097:CDS | 40.0% |
| !! | GGCAGTTGATTTGAGAAGTT+TGG | + | chr7.1:77506877-77506896 | None:intergenic | 40.0% |
| !! | TTACGTGGAATGCTGGTTTA+CGG | - | chr7.1:77507092-77507111 | MS.gene022097:intron | 40.0% |
| !!! | TTGTTGATGATGGCGGTTTT+TGG | + | chr7.1:77506782-77506801 | None:intergenic | 40.0% |
| AACCAGCATTCCACGTAAAC+CGG | + | chr7.1:77507090-77507109 | None:intergenic | 45.0% | |
| AAGATTGCTAATGGTCCTGG+TGG | - | chr7.1:77508365-77508384 | MS.gene022097:CDS | 45.0% | |
| AAGCGATCTGCTGACATCAA+CGG | + | chr7.1:77507177-77507196 | None:intergenic | 45.0% | |
| ATTAGATGTAGGAGCGAGAG+CGG | + | chr7.1:77506751-77506770 | None:intergenic | 45.0% | |
| CAAAGGCTGCTGAGAAAATG+GGG | - | chr7.1:77508195-77508214 | MS.gene022097:intron | 45.0% | |
| GAAGAGATTACCGAAGATGG+AGG | + | chr7.1:77507200-77507219 | None:intergenic | 45.0% | |
| GAGAAGATTGCTAATGGTCC+TGG | - | chr7.1:77508362-77508381 | MS.gene022097:CDS | 45.0% | |
| GGAACTCAGCACCATGAAAA+CGG | + | chr7.1:77507348-77507367 | None:intergenic | 45.0% | |
| GGCAATGAATCTTGCTTCCA+TGG | + | chr7.1:77507882-77507901 | None:intergenic | 45.0% | |
| TATGGCATAACAGTCTCCAC+AGG | + | chr7.1:77508672-77508691 | None:intergenic | 45.0% | |
| TCTTCTGCAGTTAATGGCTC+TGG | + | chr7.1:77507948-77507967 | None:intergenic | 45.0% | |
| TGTGTGTAACAGGAAGGAGT+TGG | - | chr7.1:77508829-77508848 | MS.gene022097:CDS | 45.0% | |
| ! | AGGAGGGTTGTTGTTGATGA+TGG | + | chr7.1:77506792-77506811 | None:intergenic | 45.0% |
| ! | ATGTCTGAGGCACTATCCTT+TGG | - | chr7.1:77508600-77508619 | MS.gene022097:CDS | 45.0% |
| ! | CTTTTCATTCCTCAGGAGCA+CGG | + | chr7.1:77507446-77507465 | None:intergenic | 45.0% |
| ! | GAAGATGCTCATGATAACGC+TGG | - | chr7.1:77507119-77507138 | MS.gene022097:intron | 45.0% |
| ! | GTATATGCCATTTGGTCCTG+TGG | - | chr7.1:77508653-77508672 | MS.gene022097:CDS | 45.0% |
| ! | TAAACCGGCTTCATTCAACC+CGG | + | chr7.1:77507075-77507094 | None:intergenic | 45.0% |
| ! | TGAGGAGAATAGAGGAGTGT+TGG | - | chr7.1:77508707-77508726 | MS.gene022097:CDS | 45.0% |
| ! | TTGAATGAAGCCGGTTTACG+TGG | - | chr7.1:77507077-77507096 | MS.gene022097:intron | 45.0% |
| !! | ACCGCTGGAAAAAGTATTGC+CGG | - | chr7.1:77507053-77507072 | MS.gene022097:intron | 45.0% |
| !! | AGGGTTGTTGTTGATGATGG+CGG | + | chr7.1:77506789-77506808 | None:intergenic | 45.0% |
| !! | CCTTTGGTTTGAGCAATGCA+GGG | - | chr7.1:77508616-77508635 | MS.gene022097:CDS | 45.0% |
| !! | TCCTTTGGTTTGAGCAATGC+AGG | - | chr7.1:77508615-77508634 | MS.gene022097:CDS | 45.0% |
| !!! | GTTTTGTGGCGGTGTTGTAT+CGG | + | chr7.1:77506704-77506723 | None:intergenic | 45.0% |
| !! | AAAATTATGTAAAAAAAAAT+AGG | - | chr7.1:77507653-77507672 | MS.gene022097:CDS | 5.0% |
| ACAGTCTCCACAGGACCAAA+TGG | + | chr7.1:77508663-77508682 | None:intergenic | 50.0% | |
| ACCTCAACATCCATGTACCG+AGG | + | chr7.1:77506935-77506954 | None:intergenic | 50.0% | |
| ACCTCGGTACATGGATGTTG+AGG | - | chr7.1:77506931-77506950 | MS.gene022097:CDS | 50.0% | |
| AGAAGGGCTGAGGAGAATAG+AGG | - | chr7.1:77508699-77508718 | MS.gene022097:CDS | 50.0% | |
| AGCGGTGATAGCATCTTCTC+CGG | + | chr7.1:77507039-77507058 | None:intergenic | 50.0% | |
| ATACCTCTTGAGAAGGGCTG+AGG | - | chr7.1:77508689-77508708 | MS.gene022097:CDS | 50.0% | |
| ATCGAAAAAAGTGGCGCGTG+TGG | + | chr7.1:77507006-77507025 | None:intergenic | 50.0% | |
| CAATGGTTGACCTCGGTACA+TGG | - | chr7.1:77506922-77506941 | MS.gene022097:CDS | 50.0% | |
| CAGATCGCTTCCTCCATCTT+CGG | - | chr7.1:77507187-77507206 | MS.gene022097:CDS | 50.0% | |
| CATGTACCGAGGTCAACCAT+TGG | + | chr7.1:77506924-77506943 | None:intergenic | 50.0% | |
| CCCTGCATTGCTCAAACCAA+AGG | + | chr7.1:77508619-77508638 | None:intergenic | 50.0% | |
| GCTCTGGTCTCTTCCTTGTA+TGG | + | chr7.1:77507932-77507951 | None:intergenic | 50.0% | |
| GCTTTGACAGGCAACTGATG+AGG | - | chr7.1:77508739-77508758 | MS.gene022097:CDS | 50.0% | |
| GGCTGTGATCGCAATCTCAA+AGG | - | chr7.1:77507140-77507159 | MS.gene022097:CDS | 50.0% | |
| GTTGCAAGAACAACTCCACC+AGG | + | chr7.1:77508383-77508402 | None:intergenic | 50.0% | |
| TCAGCCCTTCTCAAGAGGTA+TGG | + | chr7.1:77508690-77508709 | None:intergenic | 50.0% | |
| TCTTGGTGGGATTACTCTGG+TGG | + | chr7.1:77506667-77506686 | None:intergenic | 50.0% | |
| TTAGATGTAGGAGCGAGAGC+GGG | + | chr7.1:77506750-77506769 | None:intergenic | 50.0% | |
| ! | ATTGCCGGGTTGAATGAAGC+CGG | - | chr7.1:77507068-77507087 | MS.gene022097:intron | 50.0% |
| ! | GTAACAGGAAGGAGTTGGTC+AGG | - | chr7.1:77508834-77508853 | MS.gene022097:CDS | 50.0% |
| !! | CCGCTGGAAAAAGTATTGCC+GGG | - | chr7.1:77507054-77507073 | MS.gene022097:intron | 50.0% |
| !!! | CCCGGCAATACTTTTTCCAG+CGG | + | chr7.1:77507057-77507076 | None:intergenic | 50.0% |
| GACGTCCTGGAAGTTGAGCT+CGG | + | chr7.1:77506826-77506845 | None:intergenic | 55.0% | |
| GGAGAAGATGCTATCACCGC+TGG | - | chr7.1:77507038-77507057 | MS.gene022097:intron | 55.0% | |
| GTCGAGCCAATGGTTGACCT+CGG | - | chr7.1:77506915-77506934 | MS.gene022097:CDS | 55.0% | |
| TCTCCTCAGCCCTTCTCAAG+AGG | + | chr7.1:77508695-77508714 | None:intergenic | 55.0% | |
| TGCGGTTGCAGTCACGAATG+CGG | + | chr7.1:77507369-77507388 | None:intergenic | 55.0% | |
| TGCTGCTGACGTGACGTTTC+TGG | - | chr7.1:77507405-77507424 | MS.gene022097:CDS | 55.0% | |
| TGTCTGATTCCGTGCTCCTG+AGG | - | chr7.1:77507434-77507453 | MS.gene022097:CDS | 55.0% | |
| ! | AGCCGGTTTACGTGGAATGC+TGG | - | chr7.1:77507085-77507104 | MS.gene022097:intron | 55.0% |
| ! | CAGGAGCACGGAATCAGACA+CGG | + | chr7.1:77507434-77507453 | None:intergenic | 55.0% |
| ! | TGGCTGCATCAGGCTTTGAC+AGG | - | chr7.1:77508727-77508746 | MS.gene022097:CDS | 55.0% |
| !! | AGAGGAGTGTTGGCTGCATC+AGG | - | chr7.1:77508717-77508736 | MS.gene022097:CDS | 55.0% |
| !! | GGGTTGGAAGGGTTTTGTGG+CGG | + | chr7.1:77506715-77506734 | None:intergenic | 55.0% |
| CTGGAAGTTGAGCTCGGCGT+CGG | + | chr7.1:77506820-77506839 | None:intergenic | 60.0% | |
| TGCCATCCTCCATGCTACCG+CGG | - | chr7.1:77506893-77506912 | MS.gene022097:CDS | 60.0% | |
| TGGAAGTTGAGCTCGGCGTC+GGG | + | chr7.1:77506819-77506838 | None:intergenic | 60.0% | |
| !! | GTCAACCATTGGCTCGACCG+CGG | + | chr7.1:77506913-77506932 | None:intergenic | 60.0% |
| !!! | GGCGGGTTGGAAGGGTTTTG+TGG | + | chr7.1:77506718-77506737 | None:intergenic | 60.0% |
| CGACGCCGAGCTCAACTTCC+AGG | - | chr7.1:77506818-77506837 | MS.gene022097:CDS | 65.0% | |
| GACCGCGGTAGCATGGAGGA+TGG | + | chr7.1:77506898-77506917 | None:intergenic | 65.0% | |
| TGCTACCGCGGTCGAGCCAA+TGG | - | chr7.1:77506905-77506924 | MS.gene022097:CDS | 65.0% | |
| ! | AAGTTGAGCTCGGCGTCGGG+AGG | + | chr7.1:77506816-77506835 | None:intergenic | 65.0% |
| ! | AGTTGAGCTCGGCGTCGGGA+GGG | + | chr7.1:77506815-77506834 | None:intergenic | 65.0% |
| ! | TTGGCTCGACCGCGGTAGCA+TGG | + | chr7.1:77506905-77506924 | None:intergenic | 65.0% |
| !! | GAGGTGAGGGCGGGTTGGAA+GGG | + | chr7.1:77506726-77506745 | None:intergenic | 65.0% |
| AGCGAGAGCGGGCGAGGTGA+GGG | + | chr7.1:77506739-77506758 | None:intergenic | 70.0% | |
| GCTCGACCGCGGTAGCATGG+AGG | + | chr7.1:77506902-77506921 | None:intergenic | 70.0% | |
| TGTAGGAGCGAGAGCGGGCG+AGG | + | chr7.1:77506745-77506764 | None:intergenic | 70.0% | |
| !! | CGAGGTGAGGGCGGGTTGGA+AGG | + | chr7.1:77506727-77506746 | None:intergenic | 70.0% |
| AGAGCGGGCGAGGTGAGGGC+GGG | + | chr7.1:77506735-77506754 | None:intergenic | 75.0% | |
| GAGAGCGGGCGAGGTGAGGG+CGG | + | chr7.1:77506736-77506755 | None:intergenic | 75.0% | |
| GAGCGAGAGCGGGCGAGGTG+AGG | + | chr7.1:77506740-77506759 | None:intergenic | 75.0% | |
| ! | CTCGGCGTCGGGAGGGAGGA+GGG | + | chr7.1:77506808-77506827 | None:intergenic | 75.0% |
| ! | TGAGCTCGGCGTCGGGAGGG+AGG | + | chr7.1:77506812-77506831 | None:intergenic | 75.0% |
| ! | CGGGCGAGGTGAGGGCGGGT+TGG | + | chr7.1:77506731-77506750 | None:intergenic | 80.0% |
| !! | GCTCGGCGTCGGGAGGGAGG+AGG | + | chr7.1:77506809-77506828 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 77506660 | 77508880 | 77506660 | ID=MS.gene022097 |
| chr7.1 | mRNA | 77506660 | 77508880 | 77506660 | ID=MS.gene022097.t1;Parent=MS.gene022097 |
| chr7.1 | exon | 77508332 | 77508880 | 77508332 | ID=MS.gene022097.t1.exon1;Parent=MS.gene022097.t1 |
| chr7.1 | CDS | 77508332 | 77508880 | 77508332 | ID=cds.MS.gene022097.t1;Parent=MS.gene022097.t1 |
| chr7.1 | exon | 77507121 | 77507766 | 77507121 | ID=MS.gene022097.t1.exon2;Parent=MS.gene022097.t1 |
| chr7.1 | CDS | 77507121 | 77507766 | 77507121 | ID=cds.MS.gene022097.t1;Parent=MS.gene022097.t1 |
| chr7.1 | exon | 77506780 | 77507020 | 77506780 | ID=MS.gene022097.t1.exon3;Parent=MS.gene022097.t1 |
| chr7.1 | CDS | 77506780 | 77507020 | 77506780 | ID=cds.MS.gene022097.t1;Parent=MS.gene022097.t1 |
| chr7.1 | exon | 77506660 | 77506699 | 77506660 | ID=MS.gene022097.t1.exon4;Parent=MS.gene022097.t1 |
| chr7.1 | CDS | 77506660 | 77506699 | 77506660 | ID=cds.MS.gene022097.t1;Parent=MS.gene022097.t1 |
| Gene Sequence |
| Protein sequence |
