Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022718.t1 | XP_013443975.1 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 4.10E-249 | 870.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022718.t1 | A0A072TKP9 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 3.0e-249 | 870.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75022 | MS.gene022718 | PPI |
| MS.gene030339 | MS.gene022718 | PPI |
| MS.gene063341 | MS.gene022718 | PPI |
| MS.gene66390 | MS.gene022718 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022718.t1 | MTR_8g009770 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| MS.gene022718.t1 | MTR_3g110630 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.59e-91 | 284 |
| MS.gene022718.t1 | MTR_6g090060 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.49e-84 | 265 |
| MS.gene022718.t1 | MTR_5g005420 | 36.283 | 452 | 230 | 12 | 1 | 430 | 1 | 416 | 8.78e-79 | 250 |
| MS.gene022718.t1 | MTR_8g102270 | 39.763 | 337 | 162 | 10 | 95 | 427 | 53 | 352 | 8.11e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022718.t1 | AT5G17640 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| MS.gene022718.t1 | AT1G10020 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.15e-90 | 281 |
| MS.gene022718.t1 | AT4G29310 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.15e-89 | 277 |
| MS.gene022718.t1 | AT3G19680 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.52e-74 | 239 |
| MS.gene022718.t1 | AT1G50040 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.85e-67 | 222 |
| MS.gene022718.t1 | AT4G29310 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.24e-60 | 200 |
Find 124 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 8.3:+79032240 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.3:-79031054 | MS.gene022718:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.3:-79031064 | MS.gene022718:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.3:-79032614 | MS.gene022718:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.3:-79032595 | MS.gene022718:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8.3:+79030754 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.3:-79032352 | MS.gene022718:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.3:-79032296 | MS.gene022718:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 8.3:-79032552 | MS.gene022718:CDS |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8.3:+79032039 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 8.3:+79032117 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8.3:+79030973 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8.3:-79032034 | MS.gene022718:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 8.3:-79031163 | MS.gene022718:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.3:+79032602 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8.3:+79030753 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8.3:+79030767 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 8.3:-79032207 | MS.gene022718:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8.3:+79030761 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 8.3:-79032122 | MS.gene022718:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8.3:+79030662 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.3:-79030849 | MS.gene022718:CDS |
| TCCCTCTTCTGATCTTCCTT+CGG | 0.425944 | 8.3:+79030555 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8.3:+79032152 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 8.3:-79030704 | MS.gene022718:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.3:-79032254 | MS.gene022718:CDS |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8.3:-79030624 | MS.gene022718:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8.3:-79031115 | MS.gene022718:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.3:+79031061 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8.3:+79032159 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.3:+79032323 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8.3:-79030795 | MS.gene022718:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 8.3:-79030730 | MS.gene022718:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 8.3:+79030722 | None:intergenic |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.3:+79031016 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8.3:-79030741 | MS.gene022718:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8.3:-79032381 | MS.gene022718:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.3:-79031053 | MS.gene022718:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8.3:+79032477 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.3:-79030734 | MS.gene022718:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.3:+79032608 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 8.3:+79032241 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.3:+79032607 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8.3:-79030755 | MS.gene022718:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 8.3:-79031145 | MS.gene022718:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8.3:-79030976 | MS.gene022718:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8.3:+79032455 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.3:+79030886 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 8.3:-79030550 | MS.gene022718:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8.3:-79031137 | MS.gene022718:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 8.3:-79031144 | MS.gene022718:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 8.3:+79032123 | None:intergenic |
| CTTCTGATCTTCCTTCGGAA+AGG | 0.500164 | 8.3:+79030560 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.3:-79031194 | MS.gene022718:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.3:+79030613 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.3:-79032246 | MS.gene022718:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.3:-79032306 | MS.gene022718:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8.3:+79030992 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.3:-79031027 | MS.gene022718:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.3:-79032193 | MS.gene022718:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.3:+79030897 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.3:-79032029 | MS.gene022718:intron |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 8.3:-79032186 | MS.gene022718:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.3:-79030848 | MS.gene022718:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.3:-79032253 | MS.gene022718:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.3:+79031052 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.3:-79032603 | MS.gene022718:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.3:-79032504 | MS.gene022718:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 8.3:+79032103 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 8.3:-79030669 | MS.gene022718:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.3:-79032579 | MS.gene022718:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8.3:-79030947 | MS.gene022718:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8.3:-79030975 | MS.gene022718:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.3:-79032285 | MS.gene022718:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.3:-79032594 | MS.gene022718:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.3:-79032245 | MS.gene022718:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.3:-79031198 | MS.gene022718:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 8.3:+79031166 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.3:-79030893 | MS.gene022718:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 8.3:-79030731 | MS.gene022718:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.3:-79031193 | MS.gene022718:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.3:+79030881 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.3:+79031021 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 8.3:-79032625 | None:intergenic |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.3:-79030698 | MS.gene022718:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 8.3:-79032561 | MS.gene022718:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8.3:-79030985 | MS.gene022718:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.3:+79030959 | None:intergenic |
| TCCGAAGGAAGATCAGAAGA+GGG | 0.596281 | 8.3:-79030556 | MS.gene022718:CDS |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.3:-79030958 | MS.gene022718:CDS |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 8.3:-79031162 | MS.gene022718:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8.3:+79032446 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.3:-79030845 | MS.gene022718:CDS |
| TTCCGAAGGAAGATCAGAAG+AGG | 0.606799 | 8.3:-79030557 | MS.gene022718:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.3:+79031017 | None:intergenic |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8.3:+79032440 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.3:-79031001 | MS.gene022718:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.3:+79031075 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.3:+79030582 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.3:-79030591 | MS.gene022718:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8.3:+79032456 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.3:-79032075 | MS.gene022718:CDS |
| AGGCATGCAAGCCTTTCCGA+AGG | 0.638060 | 8.3:-79030571 | MS.gene022718:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8.3:+79030991 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 8.3:-79032177 | MS.gene022718:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.3:-79032312 | MS.gene022718:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8.3:+79030755 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.3:+79032075 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.3:-79031005 | MS.gene022718:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.3:-79030890 | MS.gene022718:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 8.3:-79031141 | MS.gene022718:CDS |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8.3:-79030764 | MS.gene022718:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8.3:-79030974 | MS.gene022718:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8.3:+79032345 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8.3:-79030645 | MS.gene022718:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.3:-79032252 | MS.gene022718:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 8.3:+79030595 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.3:+79032363 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.3:-79031034 | MS.gene022718:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 8.3:-79030689 | MS.gene022718:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8.3:+79032457 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 8.3:-79031159 | MS.gene022718:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.3:+79032609 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8.3:-79030642 | MS.gene022718:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTGATTAATTTTATAGT+AGG | + | chr8.3:79031362-79031381 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | + | chr8.3:79031872-79031891 | None:intergenic | 15.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | - | chr8.3:79030931-79030950 | MS.gene022718:CDS | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | - | chr8.3:79031219-79031238 | MS.gene022718:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | - | chr8.3:79031589-79031608 | MS.gene022718:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | - | chr8.3:79031923-79031942 | MS.gene022718:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | + | chr8.3:79031004-79031023 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | - | chr8.3:79031922-79031941 | MS.gene022718:intron | 20.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | - | chr8.3:79031603-79031622 | MS.gene022718:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | - | chr8.3:79032304-79032323 | MS.gene022718:CDS | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | - | chr8.3:79031563-79031582 | MS.gene022718:intron | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | + | chr8.3:79031053-79031072 | None:intergenic | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | - | chr8.3:79032305-79032324 | MS.gene022718:CDS | 25.0% |
| AACAAATGGAGTTGTTATGA+AGG | + | chr8.3:79032081-79032100 | None:intergenic | 30.0% | |
| ATAATGGTGAATATACGGTA+AGG | - | chr8.3:79031594-79031613 | MS.gene022718:intron | 30.0% | |
| CATCCGTTAAAAAGAATCAT+AGG | + | chr8.3:79030937-79030956 | None:intergenic | 30.0% | |
| GCAAAAAATAACTGTCTGAA+TGG | - | chr8.3:79031474-79031493 | MS.gene022718:intron | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | - | chr8.3:79030935-79030954 | MS.gene022718:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | + | chr8.3:79030759-79030778 | None:intergenic | 30.0% |
| !! | TCACTTGGCTTTTATGATAA+TGG | - | chr8.3:79031578-79031597 | MS.gene022718:intron | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | - | chr8.3:79030885-79030904 | MS.gene022718:CDS | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | + | chr8.3:79031400-79031419 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | + | chr8.3:79031401-79031420 | None:intergenic | 30.0% |
| ACATTTCTGACTTAGAATCC+GGG | - | chr8.3:79031991-79032010 | MS.gene022718:intron | 35.0% | |
| CTAAACTTGCAACTGAAGAT+TGG | + | chr8.3:79031117-79031136 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | - | chr8.3:79030801-79030820 | MS.gene022718:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | + | chr8.3:79030716-79030735 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | - | chr8.3:79031119-79031138 | MS.gene022718:CDS | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | - | chr8.3:79031990-79032009 | MS.gene022718:intron | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | + | chr8.3:79031990-79032009 | None:intergenic | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | + | chr8.3:79031456-79031475 | None:intergenic | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | - | chr8.3:79032038-79032057 | MS.gene022718:CDS | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | + | chr8.3:79030793-79030812 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | + | chr8.3:79031457-79031476 | None:intergenic | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | + | chr8.3:79031286-79031305 | None:intergenic | 35.0% | |
| ! | ATGTATTGGCAAGAACAAAC+AGG | - | chr8.3:79030960-79030979 | MS.gene022718:CDS | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | + | chr8.3:79030607-79030626 | None:intergenic | 35.0% |
| ! | CACAGTTCTCATGTGTTTTT+CGG | + | chr8.3:79032351-79032370 | None:intergenic | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | - | chr8.3:79030946-79030965 | MS.gene022718:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | - | chr8.3:79031828-79031847 | MS.gene022718:intron | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | - | chr8.3:79030857-79030876 | MS.gene022718:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | - | chr8.3:79030889-79030908 | MS.gene022718:CDS | 35.0% |
| AAACAGGAGAATGGAAAACC+AGG | - | chr8.3:79030976-79030995 | MS.gene022718:CDS | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | + | chr8.3:79031273-79031292 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | - | chr8.3:79032089-79032108 | MS.gene022718:CDS | 40.0% | |
| ATAGTAGGAATGACACAGTC+AGG | + | chr8.3:79031347-79031366 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | + | chr8.3:79032095-79032114 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | + | chr8.3:79031279-79031298 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | - | chr8.3:79032308-79032327 | MS.gene022718:CDS | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | - | chr8.3:79032349-79032368 | MS.gene022718:CDS | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | + | chr8.3:79030554-79030573 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | - | chr8.3:79030868-79030887 | MS.gene022718:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | - | chr8.3:79031124-79031143 | MS.gene022718:CDS | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | + | chr8.3:79030833-79030852 | None:intergenic | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | - | chr8.3:79032484-79032503 | MS.gene022718:CDS | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | - | chr8.3:79030550-79030569 | MS.gene022718:CDS | 40.0% |
| ! | TGGTCCAAATATGTTGCTTG+AGG | - | chr8.3:79031279-79031298 | MS.gene022718:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | - | chr8.3:79031317-79031336 | MS.gene022718:intron | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | - | chr8.3:79032100-79032119 | MS.gene022718:CDS | 40.0% |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | - | chr8.3:79030772-79030791 | MS.gene022718:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | - | chr8.3:79032099-79032118 | MS.gene022718:CDS | 40.0% |
| AACTTCGGCAGAGGTTATCA+AGG | + | chr8.3:79030701-79030720 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | - | chr8.3:79030847-79030866 | MS.gene022718:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | - | chr8.3:79031681-79031700 | MS.gene022718:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | - | chr8.3:79031259-79031278 | MS.gene022718:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | + | chr8.3:79032104-79032123 | None:intergenic | 45.0% | |
| ACTGGAATTGAACCGAACAC+TGG | - | chr8.3:79030592-79030611 | MS.gene022718:CDS | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | + | chr8.3:79030700-79030719 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | + | chr8.3:79032275-79032294 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | - | chr8.3:79032455-79032474 | MS.gene022718:CDS | 45.0% | |
| ATACCTAGTCCCCAAAGTAG+CGG | - | chr8.3:79032389-79032408 | MS.gene022718:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | + | chr8.3:79030710-79030729 | None:intergenic | 45.0% | |
| ATGACAAACCCTCCAACAAC+CGG | + | chr8.3:79032434-79032453 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | - | chr8.3:79031686-79031705 | MS.gene022718:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | + | chr8.3:79032270-79032289 | None:intergenic | 45.0% | |
| CATGAGAACTGTGGCTTCTA+CGG | - | chr8.3:79032358-79032377 | MS.gene022718:CDS | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | - | chr8.3:79031682-79031701 | MS.gene022718:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | + | chr8.3:79030548-79030567 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | - | chr8.3:79031031-79031050 | MS.gene022718:CDS | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | - | chr8.3:79032260-79032279 | MS.gene022718:CDS | 45.0% | |
| CTTCTGATCTTCCTTCGGAA+AGG | + | chr8.3:79032596-79032615 | None:intergenic | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | + | chr8.3:79032259-79032278 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | + | chr8.3:79032139-79032158 | None:intergenic | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | - | chr8.3:79030601-79030620 | MS.gene022718:CDS | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | + | chr8.3:79030547-79030566 | None:intergenic | 45.0% | |
| GCATTAGAGATTACTCCCTC+TGG | - | chr8.3:79031382-79031401 | MS.gene022718:intron | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | - | chr8.3:79032603-79032622 | MS.gene022718:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | - | chr8.3:79030967-79030986 | MS.gene022718:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | - | chr8.3:79032449-79032468 | MS.gene022718:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | - | chr8.3:79030649-79030668 | MS.gene022718:CDS | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | + | chr8.3:79031039-79031058 | None:intergenic | 45.0% | |
| TCCCTCTTCTGATCTTCCTT+CGG | + | chr8.3:79032601-79032620 | None:intergenic | 45.0% | |
| TCCGAAGGAAGATCAGAAGA+GGG | - | chr8.3:79032597-79032616 | MS.gene022718:CDS | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | + | chr8.3:79030549-79030568 | None:intergenic | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | + | chr8.3:79030997-79031016 | None:intergenic | 45.0% | |
| TTCCGAAGGAAGATCAGAAG+AGG | - | chr8.3:79032596-79032615 | MS.gene022718:CDS | 45.0% | |
| TTTCTGACTTAGAATCCGGG+AGG | - | chr8.3:79031994-79032013 | MS.gene022718:intron | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | + | chr8.3:79032402-79032421 | None:intergenic | 45.0% |
| ! | ACCAAGGACATGGAGTGTTA+TGG | + | chr8.3:79031263-79031282 | None:intergenic | 45.0% |
| ! | CTACTTTGGGGACTAGGTAT+TGG | + | chr8.3:79032389-79032408 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | + | chr8.3:79032321-79032340 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | + | chr8.3:79030679-79030698 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | - | chr8.3:79030574-79030593 | MS.gene022718:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | - | chr8.3:79030821-79030840 | MS.gene022718:CDS | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | - | chr8.3:79031955-79031974 | MS.gene022718:intron | 45.0% |
| ! | TTGGAGATCGCCGTATTTTC+AGG | - | chr8.3:79030820-79030839 | MS.gene022718:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | - | chr8.3:79030829-79030848 | MS.gene022718:CDS | 45.0% |
| !! | CAAAAAAAAATTAAAAAAAA+TGG | - | chr8.3:79031411-79031430 | MS.gene022718:intron | 5.0% |
| AATCAACCAAGCTCCTGGGT+TGG | + | chr8.3:79032135-79032154 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | + | chr8.3:79032561-79032580 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | - | chr8.3:79032562-79032581 | MS.gene022718:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | - | chr8.3:79030559-79030578 | MS.gene022718:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | - | chr8.3:79032152-79032171 | MS.gene022718:CDS | 50.0% | |
| CACCAAAGTCTCCGCTACTT+TGG | + | chr8.3:79032403-79032422 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | + | chr8.3:79032197-79032216 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | + | chr8.3:79031685-79031704 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | + | chr8.3:79031081-79031100 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | + | chr8.3:79032140-79032159 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | + | chr8.3:79032494-79032513 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | - | chr8.3:79032263-79032282 | MS.gene022718:CDS | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | + | chr8.3:79032165-79032184 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | - | chr8.3:79031959-79031978 | MS.gene022718:intron | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | + | chr8.3:79030699-79030718 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | - | chr8.3:79032016-79032035 | MS.gene022718:intron | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | + | chr8.3:79030811-79030830 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | - | chr8.3:79030841-79030860 | MS.gene022718:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | - | chr8.3:79032464-79032483 | MS.gene022718:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | - | chr8.3:79032148-79032167 | MS.gene022718:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | + | chr8.3:79030915-79030934 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | - | chr8.3:79030558-79030577 | MS.gene022718:CDS | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | + | chr8.3:79032164-79032183 | None:intergenic | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | - | chr8.3:79031960-79031979 | MS.gene022718:intron | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | - | chr8.3:79030539-79030558 | MS.gene022718:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | - | chr8.3:79030899-79030918 | MS.gene022718:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | - | chr8.3:79030900-79030919 | MS.gene022718:CDS | 50.0% |
| ! | AGACTTTGGTGCACTGAGTC+CGG | - | chr8.3:79032412-79032431 | MS.gene022718:CDS | 50.0% |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | + | chr8.3:79032401-79032420 | None:intergenic | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | - | chr8.3:79031078-79031097 | MS.gene022718:CDS | 50.0% |
| ! | CGGAACACGTATCTAGGATC+AGG | + | chr8.3:79031033-79031052 | None:intergenic | 50.0% |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | - | chr8.3:79030828-79030847 | MS.gene022718:CDS | 50.0% |
| AGGCATGCAAGCCTTTCCGA+AGG | - | chr8.3:79032582-79032601 | MS.gene022718:CDS | 55.0% | |
| CAAGATCCAACCCAGGAGCT+TGG | - | chr8.3:79032126-79032145 | MS.gene022718:CDS | 55.0% | |
| CACTGAGTCCGGTTGTTGGA+GGG | - | chr8.3:79032423-79032442 | MS.gene022718:CDS | 55.0% | |
| CCGGGAGGAGAGAGAGAAAA+GGG | - | chr8.3:79032009-79032028 | MS.gene022718:intron | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | - | chr8.3:79032195-79032214 | MS.gene022718:CDS | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | - | chr8.3:79031690-79031709 | MS.gene022718:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | + | chr8.3:79032574-79032593 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | - | chr8.3:79032012-79032031 | MS.gene022718:intron | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | - | chr8.3:79032529-79032548 | MS.gene022718:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | + | chr8.3:79030916-79030935 | None:intergenic | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | - | chr8.3:79032008-79032027 | MS.gene022718:intron | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | - | chr8.3:79031689-79031708 | MS.gene022718:intron | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | + | chr8.3:79032543-79032562 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | - | chr8.3:79032119-79032138 | MS.gene022718:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | - | chr8.3:79030908-79030927 | MS.gene022718:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | - | chr8.3:79030901-79030920 | MS.gene022718:CDS | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | - | chr8.3:79032398-79032417 | MS.gene022718:CDS | 55.0% |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | + | chr8.3:79032012-79032031 | None:intergenic | 55.0% |
| ! | TCTCCGCTACTTTGGGGACT+AGG | + | chr8.3:79032395-79032414 | None:intergenic | 55.0% |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | - | chr8.3:79032168-79032187 | MS.gene022718:CDS | 55.0% |
| ATTGCGACACGTGACGTGCG+TGG | - | chr8.3:79032508-79032527 | MS.gene022718:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | - | chr8.3:79032422-79032441 | MS.gene022718:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | - | chr8.3:79032419-79032438 | MS.gene022718:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | - | chr8.3:79030907-79030926 | MS.gene022718:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | - | chr8.3:79032178-79032197 | MS.gene022718:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | - | chr8.3:79032206-79032225 | MS.gene022718:CDS | 65.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | - | chr8.3:79032177-79032196 | MS.gene022718:CDS | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | - | chr8.3:79032511-79032530 | MS.gene022718:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | + | chr8.3:79032183-79032202 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | - | chr8.3:79032179-79032198 | MS.gene022718:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79030538 | 79032637 | 79030538 | ID=MS.gene022718 |
| chr8.3 | mRNA | 79030538 | 79032637 | 79030538 | ID=MS.gene022718.t1;Parent=MS.gene022718 |
| chr8.3 | exon | 79032030 | 79032637 | 79032030 | ID=MS.gene022718.t1.exon1;Parent=MS.gene022718.t1 |
| chr8.3 | CDS | 79032030 | 79032637 | 79032030 | ID=cds.MS.gene022718.t1;Parent=MS.gene022718.t1 |
| chr8.3 | exon | 79030538 | 79031231 | 79030538 | ID=MS.gene022718.t1.exon2;Parent=MS.gene022718.t1 |
| chr8.3 | CDS | 79030538 | 79031231 | 79030538 | ID=cds.MS.gene022718.t1;Parent=MS.gene022718.t1 |
| Gene Sequence |
| Protein sequence |
