AlfalfaGEDB | MS.gene022902

M. sativa cultivar XinJiangDaYe / MS.gene022902

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14 PF11883.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022902.t1	KEH22681.1	95.8	828	33	2	1	827	1	827	0.00E+00	1601.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022902.t1	Q9SXB4	48.2	834	388	13	15	827	10	820	1.6e-213	744.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022902.t1	A0A072TZR6	95.8	828	33	2	1	827	1	827	0.0e+00	1601.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009019	MS.gene022902	PPI
MS.gene022902	MS.gene028590	PPI
MS.gene022902	MS.gene052588	PPI
MS.gene022902	MS.gene28694	PPI
MS.gene022902	MS.gene28689	PPI
MS.gene022902	MS.gene28692	PPI
MS.gene022902	MS.gene40169	PPI
MS.gene022902	MS.gene28685	PPI
MS.gene022902	MS.gene028592	PPI
MS.gene022902	MS.gene40080	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene022902.t1	MTR_7g056450	95.773	828	33	2	1	827	1	827	1642
MS.gene022902.t1	MTR_7g056450	95.407	675	29	2	1	674	11	684	1332
MS.gene022902.t1	MTR_7g056430	63.391	814	262	12	28	827	368	1159	1057
MS.gene022902.t1	MTR_7g056510	59.878	820	292	11	28	827	20	822	989
MS.gene022902.t1	MTR_7g056663	59.320	853	312	10	1	827	1	844	988
MS.gene022902.t1	MTR_7g056667	59.102	846	301	14	8	827	6	832	985
MS.gene022902.t1	MTR_7g056640	59.356	807	292	7	28	827	58	835	982
MS.gene022902.t1	MTR_7g056680	60.024	838	305	9	1	827	1	819	978
MS.gene022902.t1	MTR_7g056680	59.431	843	307	9	1	827	1	824	978
MS.gene022902.t1	MTR_7g056680	59.785	838	303	9	1	827	1	815	975

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene022902.t1	AT1G11330	49.567	809	386	12	34	827	39	840	785
MS.gene022902.t1	AT1G11330	49.568	811	385	13	34	827	39	842	784
MS.gene022902.t1	AT1G11300	48.681	834	384	14	15	827	10	820	776
MS.gene022902.t1	AT1G11300	48.739	833	370	15	15	827	10	805	766
MS.gene022902.t1	AT1G11303	47.255	838	398	13	10	827	7	820	748
MS.gene022902.t1	AT1G11350	47.831	830	398	17	21	827	13	830	729
MS.gene022902.t1	AT4G21390	46.220	820	395	18	40	827	44	849	704
MS.gene022902.t1	AT1G11330	51.058	709	323	13	34	725	39	740	701
MS.gene022902.t1	AT1G61370	43.250	837	430	15	10	827	4	814	685
MS.gene022902.t1	AT1G61610	43.077	845	434	20	12	827	16	842	665

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Find 133 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGTCGAGATCATC+CGG	0.478868	7.2:+46663304	MS.gene022902:CDS
AAAATCTTGGAGTATTGAAA+AGG	0.502539	7.2:+46662107	MS.gene022902:CDS
AAACGCTTTAGTATAATAGA+AGG	0.447930	7.2:+46663670	MS.gene022902:CDS
AAACTCAACTCTTTGTTGTA+TGG	0.310445	7.2:+46661524	MS.gene022902:CDS
AAACTTGGACAAGGAGGTTT+TGG	0.261465	7.2:+46663131	MS.gene022902:CDS
AAAGAGAAGCTTCCGTTGGA+TGG	0.488539	7.2:-46661847	None:intergenic
AAATCAGACGTCTTCAGCTT+TGG	0.376486	7.2:+46664002	MS.gene022902:CDS
AAATCAGATTGTGATCTTTA+TGG	0.106758	7.2:+46662159	MS.gene022902:CDS
AACAATATTGTTATATTGAA+CGG	0.458584	7.2:+46661610	MS.gene022902:CDS
AACCAAGAAACAATCAAGAG+TGG	0.602313	7.2:+46662250	MS.gene022902:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATCATTGATCAATGGT+TGG	-	chr7.2:46661564-46661583	None:intergenic	30.0%
ACGGAAAGAAAAATGTTATC+TGG	+	chr7.2:46661629-46661648	MS.gene022902:CDS	30.0%
ACTGTTATGTGTACAAGAAT+CGG	+	chr7.2:46664301-46664320	MS.gene022902:CDS	30.0%
AGACAACAATTCTGCAAAAT+CGG	-	chr7.2:46662406-46662425	None:intergenic	30.0%
ATATCAATGCAGTGGTTATA+TGG	+	chr7.2:46663944-46663963	MS.gene022902:intron	30.0%
ATATGATCAACTAAAAGGAC+CGG	-	chr7.2:46662679-46662698	None:intergenic	30.0%
ATGTATGTTCTTAATTCGAC+AGG	+	chr7.2:46662072-46662091	MS.gene022902:CDS	30.0%
ATGTCAGCTCTTTATCTTAA+TGG	+	chr7.2:46661976-46661995	MS.gene022902:CDS	30.0%
ATTACAGTTTCAGTACTAGT+AGG	+	chr7.2:46662785-46662804	MS.gene022902:CDS	30.0%
ATTTCGAGATGCATACATAT+AGG	+	chr7.2:46664278-46664297	MS.gene022902:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	46661325	46664508	46661325	ID=MS.gene022902
chr7.2	mRNA	46661325	46664508	46661325	ID=MS.gene022902.t1;Parent=MS.gene022902
chr7.2	exon	46661325	46662588	46661325	ID=MS.gene022902.t1.exon1;Parent=MS.gene022902.t1
chr7.2	CDS	46661325	46662588	46661325	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46662759	46662863	46662759	ID=MS.gene022902.t1.exon2;Parent=MS.gene022902.t1
chr7.2	CDS	46662759	46662863	46662759	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46662961	46663166	46662961	ID=MS.gene022902.t1.exon3;Parent=MS.gene022902.t1
chr7.2	CDS	46662961	46663166	46662961	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46663271	46663481	46663271	ID=MS.gene022902.t1.exon4;Parent=MS.gene022902.t1
chr7.2	CDS	46663271	46663481	46663271	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46663638	46663875	46663638	ID=MS.gene022902.t1.exon5;Parent=MS.gene022902.t1
chr7.2	CDS	46663638	46663875	46663638	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46663956	46664106	46663956	ID=MS.gene022902.t1.exon6;Parent=MS.gene022902.t1
chr7.2	CDS	46663956	46664106	46663956	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1
chr7.2	exon	46664200	46664508	46664200	ID=MS.gene022902.t1.exon7;Parent=MS.gene022902.t1
chr7.2	CDS	46664200	46664508	46664200	ID=cds.MS.gene022902.t1;Parent=MS.gene022902.t1

Gene Sequence

>MS.gene022902

ATGGTTTTAAGCAAGTACAAAAATTTGATCTCAGTTTTGAATTTCATCACATCATTACTATGTTGTTCCTTTTTTGTTCATGTTGCCACACAACAAATCATCAAAGACTCCGAAACTTTAAGCTCAAATAGTGGAAATTTCACCTTAGGATTTTTCACCCCTCAAAATTCCACAAATCGCTATGTAGGAATTTGGTGCAAAACTCAACTCTTTGTTGTATGGGTTGCCAACAGAAACCAACCATTGATCAATGATTCTTCTGGAGTTCTTGAAATATCCAATGATAACAATATTGTTATATTGAACGGAAAGAAAAATGTTATCTGGTCAACAAATTTGAACAATGTTTCAACAATCACCAATTCTAGTGTCACACTTTCAGATTATGGAAGTCTTGAATTGTTTGAAACAATTACAGAAAAAACCATATGGGCGAGTTCCGATCATCCTACAAATTCAATATTACCAAGCCTGAAATTTACAAGCAACATGACAATCACATCATGGAAAACACCTACTGATCCATCCAACGGAAGCTTCTCTTTAAGCATTGAACGGTTGAATATGCCAGAAGTTTTTATCAGGAAAGAAAATCGGCCATATTGGCGGAGTGGTCCTTGGAACAATCAAATCTTTATAGGGATAGAAGACATGTCAGCTCTTTATCTTAATGGTTTTCATTTCGAAAAAGATAGAACCGGAGGAACTCTTGATTTAGTCTTCAGAGCAGACGACTATGGACTTGTGATGTATGTTCTTAATTCGACAGGTCAAATGAATGAAAAATCTTGGAGTATTGAAAAGGAGGAATGGATGGATACATGGACTAATCAAAAATCAGATTGTGATCTTTATGGTTTTTGTGGTTCATTTGGAATTTGTAATTCAAAAGGGTCGCCAATTTGTCGCTGTTTGGAAGGGTTTGAACCAAGAAACAATCAAGAGTGGAATAAACAAAATTGGACTAATGGATGTGTTAGGAAGACGCCGTTGCAGTGTGAAAGTGCCAACAATCAAAATAAGAGCGCAAATGGTAATGAAGCTGATAGTTTTTTGAAATTGAGTCTAGTAAAAGTACCCGATTTTGCAGAATTGTTGTCTGTTGAACAAGATGAATGCAAAAACCAGTGTTTGATGAATTGCTCTTGCACTGCATATTCATATGTAGCTGATATTGGTTGTATGTCTTGGAATAGAAATCTAATTGATATTCAACAATTCGAAACTGGAGGAACTGATCTATACATTCGTGTACCATCATCAGGTATTCTTTTTAGCTAGACAAATGTATATTAGTTGTTATGTTAGTATTTTTCTCCTTCACCAGGTATTATTGAAGAAAAATTTGAATCCGGTCCTTTTAGTTGATCATATATATTTTTTGTTTGGACAAAAATTCTTCAGTTATAAGTTTTTATCATCCCTTAATTACAGATAAAGGGAACAAAGAAACAGTTATCATTACAGTTTCAGTACTAGTAGGAATTATCATAATTGCTACTGTGGCATATTTCATTTGGATAAAGGTTTCAAAGCCAGGTAAGTACTATTGTTGTTGATCTAATTTTCTCAAACATGCTATTTTACTGGTATATTTGTCAAACTCTTTCTAAACTGTGATACTTTAATGATTCAGTGAGAAAGAAGAAGAAGCATAGAATTTTTCAATTCAACAAAATTGAAAAAGATGAAGAATACAAAACTGACAATGTAATTGGAGAACTGTCACAAGCAAAGCTACAAGAGCTATTACTATATAGTTTTGAAAAGCTTGCAATTGCCACAAACAACTTCCATGTATCCAATAAACTTGGACAAGGAGGTTTTGGTCCTGTATACAAGGTATGTAAAATCAAGCTAAGTTTTGAACAAGTAAAATCAAGCAAAGTTAATTGTGTTTGAAGTCATTAGTTGTCTAATTTTTTTCTTCTGATGTTTTATTCTAGGGAATACTTCAAGATGGTAAGGAAATAGCGGTTAAAAGACTGTCGAGATCATCCGGACAAGGGTTAGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAGCTTCAGCACCGAAATCTTGTAAGACTTGTAGGCTGCTGCATTGAAGGAGATGAAAAGATGTTGATGTATGAGTTCATGCCAAATAGCAGTCTGGATGCATATGTTTTTGGTTAGTTCTTTTGAAAACTTTCATAGTCTATTTATTAACGATGTGTAATCTATTTTTCGAACATAGATTTTCTAGAAAGTAATCTAGGTAGAAGATTTAGATGCATCTTCAGATAAGTTCAAAATAATATGTTATGATGATTTTTAACCTTTATAGATCCATCAAGAAATAAACTTCTGGATTGGGAGAAACGCTTTAGTATAATAGAAGGAATAGCTCGTGGATTGCTTTATCTACACAGGGATTCCAGGCTAAAGATCATACATAGAGATATGAAGGCAAGTAATATCTTGCTAGACGAGAATCTGAATCCAAAAATATCAGACTTTGGTATGGCCAGAATCTTTGGAGTGAGTGAAGATCATGCCAATACTCAAAGGGTTGTCGGAACATAGTAAGTTTAATTTACCTTTTTGATTATCCAATTTTATATATAAACATACACGAAGAGTCACTTATAATATATCAATGCAGTGGTTATATGGCTCCAGAGTATGCAATGCAAGGAGTATTTTCGGATAAATCAGACGTCTTCAGCTTTGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTTATGAACATGAAAATTCTCTCACTCTCTTAGGATTTGTAAGTCTATACATACAACTAGATATATTGAAACGATAAAACTTCCGTAGACTTGTTTTTAATAACACTTCAATGATTTTTGTTTCATTTTAGGCTTGGATTCAATGGAAGGAAGACAATATTTTATCTTTGATAGAACCAGAAATATATGATCATAGTAATCATAGGAGTATTTCGAGATGCATACATATAGGACTGTTATGTGTACAAGAATCGGCTGTGGATAGACCAACTATGGCTTCAGTGATTTCTATGCTTAACAGTGAAATTATGGACATTCCTCCTGCAAGGGAACCTGCATTCTTACTGAGGCAGAATATGTTGAATACAGTTTCTTCTGAAGAAAGAAATGAATTTTACTCCAATAATGCTTTGAGTATCACAGACATTCATGGAAGATAA

Protein sequence

>MS.gene022902.t1

MVLSKYKNLISVLNFITSLLCCSFFVHVATQQIIKDSETLSSNSGNFTLGFFTPQNSTNRYVGIWCKTQLFVVWVANRNQPLINDSSGVLEISNDNNIVILNGKKNVIWSTNLNNVSTITNSSVTLSDYGSLELFETITEKTIWASSDHPTNSILPSLKFTSNMTITSWKTPTDPSNGSFSLSIERLNMPEVFIRKENRPYWRSGPWNNQIFIGIEDMSALYLNGFHFEKDRTGGTLDLVFRADDYGLVMYVLNSTGQMNEKSWSIEKEEWMDTWTNQKSDCDLYGFCGSFGICNSKGSPICRCLEGFEPRNNQEWNKQNWTNGCVRKTPLQCESANNQNKSANGNEADSFLKLSLVKVPDFAELLSVEQDECKNQCLMNCSCTAYSYVADIGCMSWNRNLIDIQQFETGGTDLYIRVPSSDKGNKETVIITVSVLVGIIIIATVAYFIWIKVSKPVRKKKKHRIFQFNKIEKDEEYKTDNVIGELSQAKLQELLLYSFEKLAIATNNFHVSNKLGQGGFGPVYKGILQDGKEIAVKRLSRSSGQGLEEFMNEVVVISKLQHRNLVRLVGCCIEGDEKMLMYEFMPNSSLDAYVFDPSRNKLLDWEKRFSIIEGIARGLLYLHRDSRLKIIHRDMKASNILLDENLNPKISDFGMARIFGVSEDHANTQRVVGTYGYMAPEYAMQGVFSDKSDVFSFGVLLIEIVSGRRNSSFYEHENSLTLLGFAWIQWKEDNILSLIEPEIYDHSNHRSISRCIHIGLLCVQESAVDRPTMASVISMLNSEIMDIPPAREPAFLLRQNMLNTVSSEERNEFYSNNALSITDIHGR