Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024066.t1 | XP_003624218.1 | 99.5 | 366 | 2 | 0 | 1 | 366 | 2 | 367 | 5.10E-208 | 733.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024066.t1 | P0DKC3 | 89.5 | 296 | 31 | 0 | 71 | 366 | 67 | 362 | 1.5e-155 | 550.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024066.t1 | G7KSE8 | 99.5 | 366 | 2 | 0 | 1 | 366 | 2 | 367 | 3.7e-208 | 733.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033506 | MS.gene024066 | PPI |
MS.gene52606 | MS.gene024066 | PPI |
MS.gene024066 | MS.gene52606 | PPI |
MS.gene048269 | MS.gene024066 | PPI |
MS.gene024066 | MS.gene01955 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024066.t1 | MTR_7g080530 | 99.454 | 366 | 2 | 0 | 1 | 366 | 2 | 367 | 0.0 | 756 |
MS.gene024066.t1 | MTR_7g080530 | 98.305 | 236 | 4 | 0 | 1 | 236 | 2 | 237 | 2.48e-172 | 480 |
MS.gene024066.t1 | MTR_2g027270 | 65.772 | 298 | 102 | 0 | 67 | 364 | 5 | 302 | 2.77e-144 | 410 |
MS.gene024066.t1 | MTR_2g027270 | 67.843 | 255 | 82 | 0 | 110 | 364 | 1 | 255 | 3.01e-124 | 358 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024066.t1 | AT5G36790 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36700 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36700 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36700 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36790 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36790 | 77.135 | 363 | 75 | 3 | 4 | 366 | 8 | 362 | 0.0 | 546 |
MS.gene024066.t1 | AT5G36700 | 77.477 | 333 | 67 | 3 | 4 | 336 | 8 | 332 | 5.87e-179 | 500 |
MS.gene024066.t1 | AT5G47760 | 64.214 | 299 | 104 | 2 | 64 | 361 | 1 | 297 | 1.04e-141 | 404 |
MS.gene024066.t1 | AT5G47760 | 60.526 | 228 | 83 | 4 | 64 | 289 | 1 | 223 | 5.80e-93 | 277 |
Find 66 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGATAATCTATAGTTTA+TGG | 0.190459 | 7.1:+23939913 | None:intergenic |
CTTAATTTGCAGGAGTTATA+TGG | 0.212201 | 7.1:-23939055 | MS.gene024066:intron |
AATGCAGAATTTGACAATAA+AGG | 0.273959 | 7.1:+23939878 | None:intergenic |
TCATACAGCTGCAGCCTTTA+GGG | 0.290646 | 7.1:+23936194 | None:intergenic |
CTAAGCATGTCAAGTGTTTC+AGG | 0.291680 | 7.1:+23939005 | None:intergenic |
ATGCAGAATTTGACAATAAA+GGG | 0.297137 | 7.1:+23939879 | None:intergenic |
TGATTTCCCAAAAGATAAAA+AGG | 0.297316 | 7.1:-23938614 | MS.gene024066:intron |
CCTAGACTTAGTTGAGTTGT+TGG | 0.305426 | 7.1:+23938834 | None:intergenic |
TTGAAGGAGCTTGAGCTTGC+TGG | 0.325512 | 7.1:-23938117 | MS.gene024066:CDS |
ATCATACAGCTGCAGCCTTT+AGG | 0.327656 | 7.1:+23936193 | None:intergenic |
GACTAACCGCGTTGACATTC+AGG | 0.336383 | 7.1:+23938779 | None:intergenic |
CAAATTCTGCATTTGTTAAG+TGG | 0.339515 | 7.1:-23939868 | MS.gene024066:CDS |
ATGATTTAGGTTTATGTCAT+TGG | 0.349189 | 7.1:-23938153 | MS.gene024066:intron |
TATAGATTATCTCAATTTGC+TGG | 0.361874 | 7.1:-23939905 | MS.gene024066:CDS |
CTCAGGTGTCACCACATTGC+CGG | 0.378545 | 7.1:-23936283 | MS.gene024066:CDS |
TTTGTCACACTCAAAGATTA+TGG | 0.381720 | 7.1:-23939949 | MS.gene024066:CDS |
ACTAAGTCTAGGAAACAATA+TGG | 0.391703 | 7.1:-23938823 | MS.gene024066:CDS |
TAGGTTGGAGCAGTTGTTGT+GGG | 0.404771 | 7.1:-23937587 | MS.gene024066:CDS |
GTTTATGTCATTGGAGAAGA+TGG | 0.414677 | 7.1:-23938144 | MS.gene024066:CDS |
ATCTCACAGATGCTCAAGAA+TGG | 0.418220 | 7.1:-23937057 | MS.gene024066:CDS |
AGTCACAGATATGTATGGTT+GGG | 0.422366 | 7.1:-23936368 | MS.gene024066:CDS |
ATGTTATTCTTTCAGGAAGA+TGG | 0.441613 | 7.1:-23937741 | MS.gene024066:intron |
TCTGGTTGTATGGAGTTGTC+TGG | 0.445662 | 7.1:+23936249 | None:intergenic |
CATCTTCATCATGCTCCATC+AGG | 0.458310 | 7.1:+23937688 | None:intergenic |
TTCAAAGTCACAGATATGTA+TGG | 0.459793 | 7.1:-23936373 | MS.gene024066:CDS |
CAACGCGAACCACTAGTTGT+TGG | 0.464212 | 7.1:-23936579 | MS.gene024066:CDS |
GGTATAGAAGTCTGGTTGTA+TGG | 0.467427 | 7.1:+23936239 | None:intergenic |
ACTTGACATGCTTAGGTCAA+AGG | 0.475749 | 7.1:-23938997 | MS.gene024066:intron |
TAGTCCATCATGAAAGTTGA+GGG | 0.477251 | 7.1:+23936552 | None:intergenic |
AAAGGTGACAGCTTGATAGA+AGG | 0.481088 | 7.1:-23939032 | MS.gene024066:CDS |
AATTACAAAGAATGATGCTT+AGG | 0.484603 | 7.1:-23940006 | None:intergenic |
AAAACCCTCAACTTTCATGA+TGG | 0.494302 | 7.1:-23936556 | MS.gene024066:CDS |
TCAAAGATTATGGTCACATT+CGG | 0.498256 | 7.1:-23939939 | MS.gene024066:CDS |
TCTCACAGATGCTCAAGAAT+GGG | 0.503792 | 7.1:-23937056 | MS.gene024066:CDS |
AAAACTCTACTTGTCCTCTC+AGG | 0.505930 | 7.1:-23936300 | MS.gene024066:CDS |
TGGAGAAGATGGCATCTTGA+AGG | 0.505999 | 7.1:-23938133 | MS.gene024066:CDS |
CTGAAACACTTGACATGCTT+AGG | 0.507446 | 7.1:-23939004 | MS.gene024066:CDS |
TAGAATGGCAACAAAAGCAT+TGG | 0.508024 | 7.1:-23939807 | MS.gene024066:CDS |
GCTGGATATCAGTATGTTGG+TGG | 0.534636 | 7.1:-23938099 | MS.gene024066:CDS |
TTAGGTTGGAGCAGTTGTTG+TGG | 0.537281 | 7.1:-23937588 | MS.gene024066:intron |
GTTAAGTGGAAAAGAAACAT+TGG | 0.539508 | 7.1:-23939854 | MS.gene024066:CDS |
GGAAAGAAGTTTGAAACACT+TGG | 0.541519 | 7.1:-23938802 | MS.gene024066:CDS |
CCAACAACTCAACTAAGTCT+AGG | 0.542212 | 7.1:-23938834 | MS.gene024066:CDS |
GTAGCAATGAAAAGACATCC+AGG | 0.552022 | 7.1:+23937100 | None:intergenic |
TTTGCAGGAGTTATATGGAA+AGG | 0.553212 | 7.1:-23939050 | MS.gene024066:intron |
GTCACAGATATGTATGGTTG+GGG | 0.555276 | 7.1:-23936367 | MS.gene024066:CDS |
AAGTCACAGATATGTATGGT+TGG | 0.555635 | 7.1:-23936369 | MS.gene024066:CDS |
TCTATGGTTGGTGCTCTCGT+TGG | 0.556722 | 7.1:-23936609 | MS.gene024066:CDS |
TCATGCTCCATCAGGAACCC+TGG | 0.563838 | 7.1:+23937696 | None:intergenic |
ACTATAGCAGCTACTAGTGT+TGG | 0.568959 | 7.1:-23939974 | MS.gene024066:CDS |
ACAGATGCTCAAGAATGGGC+AGG | 0.573709 | 7.1:-23937052 | MS.gene024066:intron |
GCTTAAGCCAGGGTTCCTGA+TGG | 0.586675 | 7.1:-23937703 | MS.gene024066:CDS |
CTTGCTGGATATCAGTATGT+TGG | 0.590796 | 7.1:-23938102 | MS.gene024066:CDS |
ATATCAGTATGTTGGTGGGC+CGG | 0.592199 | 7.1:-23938094 | MS.gene024066:intron |
TAGCAATGAAAAGACATCCA+GGG | 0.592708 | 7.1:+23937101 | None:intergenic |
TATTCTTTCAGGAAGATGGC+GGG | 0.596114 | 7.1:-23937737 | MS.gene024066:intron |
TTGTCTGGACTCTGTAGCAC+CGG | 0.600209 | 7.1:+23936264 | None:intergenic |
AGCTCATCAGCATTCTGAAG+CGG | 0.606940 | 7.1:+23939779 | None:intergenic |
TTATTCTTTCAGGAAGATGG+CGG | 0.625304 | 7.1:-23937738 | MS.gene024066:intron |
GTAGTCCATCATGAAAGTTG+AGG | 0.626905 | 7.1:+23936551 | None:intergenic |
CTGTGTATACGTGAAAACCC+TGG | 0.633110 | 7.1:-23937118 | MS.gene024066:CDS |
CTGGATATCAGTATGTTGGT+GGG | 0.645009 | 7.1:-23938098 | MS.gene024066:CDS |
AAAAGATCGAGCTTAAGCCA+GGG | 0.676471 | 7.1:-23937713 | MS.gene024066:CDS |
ACTCTGTAGCACCGGCAATG+TGG | 0.680556 | 7.1:+23936272 | None:intergenic |
GCAATGTGGTGACACCTGAG+AGG | 0.718035 | 7.1:+23936286 | None:intergenic |
ACTTGGCCTGAATGTCAACG+CGG | 0.778429 | 7.1:-23938785 | MS.gene024066:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAATTAAAAAATTTCGT+TGG | - | chr7.1:23938738-23938757 | MS.gene024066:intron | 15.0% |
!! | TAAATATGAATAAACATGTA+TGG | + | chr7.1:23938842-23938861 | None:intergenic | 15.0% |
!! | TATGCATTATTATTCAAAAT+TGG | + | chr7.1:23938246-23938265 | None:intergenic | 15.0% |
!! | TGGTTAAAATAATGATAAAA+CGG | + | chr7.1:23938201-23938220 | None:intergenic | 15.0% |
!!! | ATTTTTTAATTTTCTAATCG+TGG | + | chr7.1:23938733-23938752 | None:intergenic | 15.0% |
!!! | TCAAATTACAAGTATTTTTA+AGG | - | chr7.1:23936794-23936813 | MS.gene024066:intron | 15.0% |
!!! | TTTTTTAATTTTCTAATCGT+GGG | + | chr7.1:23938732-23938751 | None:intergenic | 15.0% |
!! | ATAAAATCAGTAATAGTGAA+AGG | + | chr7.1:23939175-23939194 | None:intergenic | 20.0% |
!! | ATAAGATGTTAATAAGTTAG+TGG | - | chr7.1:23936598-23936617 | MS.gene024066:CDS | 20.0% |
!! | ATAATGAAATCAATACATGA+GGG | + | chr7.1:23936979-23936998 | None:intergenic | 20.0% |
!! | ATGCTGATAAAATTTAGATT+TGG | + | chr7.1:23938915-23938934 | None:intergenic | 20.0% |
!! | CAACTAAATAGAATACTATA+GGG | - | chr7.1:23937727-23937746 | MS.gene024066:CDS | 20.0% |
!! | TAAAATCAGTAATAGTGAAA+GGG | + | chr7.1:23939174-23939193 | None:intergenic | 20.0% |
!! | TAATAAACACAGCTTATAAT+AGG | + | chr7.1:23938578-23938597 | None:intergenic | 20.0% |
!! | TATAAGCTGTGTTTATTATT+AGG | - | chr7.1:23938580-23938599 | MS.gene024066:intron | 20.0% |
!! | TCAACTAAATAGAATACTAT+AGG | - | chr7.1:23937726-23937745 | MS.gene024066:CDS | 20.0% |
!! | TGTTCAATAAAATTACAACA+CGG | + | chr7.1:23939780-23939799 | None:intergenic | 20.0% |
!! | TTGAGATAATCTATAGTTTA+TGG | + | chr7.1:23936276-23936295 | None:intergenic | 20.0% |
!!! | AAGAAAATCTGAAATTTTGT+TGG | + | chr7.1:23939971-23939990 | None:intergenic | 20.0% |
!!! | ATGTATTTTATAATGTAGCT+AGG | - | chr7.1:23938955-23938974 | MS.gene024066:intron | 20.0% |
!!! | ATGTTACCTTTTTATCTTTT+GGG | + | chr7.1:23937581-23937600 | None:intergenic | 20.0% |
!!! | GATAGTTTAAAATTCTGTTA+AGG | - | chr7.1:23938980-23938999 | MS.gene024066:intron | 20.0% |
!!! | TAAAAACAATCGTTTTAGAA+TGG | - | chr7.1:23936364-23936383 | MS.gene024066:CDS | 20.0% |
!!! | TATATTCTGTTATTTTTGCT+AGG | - | chr7.1:23936723-23936742 | MS.gene024066:intron | 20.0% |
!!! | TATGTTACCTTTTTATCTTT+TGG | + | chr7.1:23937582-23937601 | None:intergenic | 20.0% |
!!! | TCTAAAACGATTGTTTTTAT+TGG | + | chr7.1:23936363-23936382 | None:intergenic | 20.0% |
!!! | TCTAAAATCATTTAATTTCC+TGG | + | chr7.1:23937782-23937801 | None:intergenic | 20.0% |
!!! | TGTATTTTATAATGTAGCTA+GGG | - | chr7.1:23938956-23938975 | MS.gene024066:intron | 20.0% |
!!! | TTGATGATTAAGTTTTTTCT+AGG | - | chr7.1:23936526-23936545 | MS.gene024066:intron | 20.0% |
!!! | TTGTAATTTTATTGAACAAC+AGG | - | chr7.1:23939782-23939801 | MS.gene024066:CDS | 20.0% |
!!! | TTTGAAAACTCTTTTTTTTC+AGG | + | chr7.1:23939360-23939379 | None:intergenic | 20.0% |
!!! | TTTTTAATTTTCTAATCGTG+GGG | + | chr7.1:23938731-23938750 | None:intergenic | 20.0% |
! | AAACATGTCATAATTCATGT+TGG | + | chr7.1:23937754-23937773 | None:intergenic | 25.0% |
! | AACATGTCATAATTCATGTT+GGG | + | chr7.1:23937753-23937772 | None:intergenic | 25.0% |
! | AATGCAGAATTTGACAATAA+AGG | + | chr7.1:23936311-23936330 | None:intergenic | 25.0% |
! | AGTATTCTATTTAGTTGAAG+CGG | + | chr7.1:23937724-23937743 | None:intergenic | 25.0% |
! | ATAAAATTTAGATTTGGCCA+TGG | + | chr7.1:23938909-23938928 | None:intergenic | 25.0% |
! | ATATTGTGTGTTTGAATTTC+AGG | - | chr7.1:23939547-23939566 | MS.gene024066:intron | 25.0% |
! | ATGCAGAATTTGACAATAAA+GGG | + | chr7.1:23936310-23936329 | None:intergenic | 25.0% |
! | CAAAGAAAACATATTCAACA+TGG | + | chr7.1:23938872-23938891 | None:intergenic | 25.0% |
! | CATAAAAAGACTAGCAAATT+AGG | - | chr7.1:23939385-23939404 | MS.gene024066:intron | 25.0% |
! | CATAATGAAATCAATACATG+AGG | + | chr7.1:23936980-23936999 | None:intergenic | 25.0% |
! | CTCTATTATTGAATTGGAAA+AGG | - | chr7.1:23936479-23936498 | MS.gene024066:intron | 25.0% |
! | GAATTGGAAAAGGAAAAAAA+TGG | - | chr7.1:23936489-23936508 | MS.gene024066:intron | 25.0% |
! | TATAGATTATCTCAATTTGC+TGG | - | chr7.1:23936281-23936300 | MS.gene024066:CDS | 25.0% |
! | TGATTTCCCAAAAGATAAAA+AGG | - | chr7.1:23937572-23937591 | MS.gene024066:CDS | 25.0% |
! | TTAGAAAAAATTCTGAGCTT+TGG | - | chr7.1:23937288-23937307 | MS.gene024066:intron | 25.0% |
! | TTATGACATGTTTATAAACC+AGG | - | chr7.1:23937761-23937780 | MS.gene024066:intron | 25.0% |
! | TTATGCCTCTATTATTGAAT+TGG | - | chr7.1:23936473-23936492 | MS.gene024066:intron | 25.0% |
!! | ACTTTTATCTTTGATTGTGA+CGG | - | chr7.1:23936446-23936465 | MS.gene024066:intron | 25.0% |
!! | AGTTTAAAATTCTGTTAAGG+TGG | - | chr7.1:23938983-23939002 | MS.gene024066:intron | 25.0% |
!! | ATGATTTAGGTTTATGTCAT+TGG | - | chr7.1:23938033-23938052 | MS.gene024066:intron | 25.0% |
!! | ATTTTATTGAACAACAGGTT+TGG | - | chr7.1:23939787-23939806 | MS.gene024066:CDS | 25.0% |
!! | CTTTTCCAATTCAATAATAG+AGG | + | chr7.1:23936481-23936500 | None:intergenic | 25.0% |
!! | TAAACTTTAGGGAAAAAGAT+TGG | - | chr7.1:23937320-23937339 | MS.gene024066:intron | 25.0% |
!!! | ATGTTTGTGGTTAATTTGTT+AGG | + | chr7.1:23939335-23939354 | None:intergenic | 25.0% |
!!! | TTAGTGGTTATGTTATTTTC+TGG | - | chr7.1:23936614-23936633 | MS.gene024066:CDS | 25.0% |
!!! | TTTATCTTTTGGGAAATCAA+TGG | + | chr7.1:23937571-23937590 | None:intergenic | 25.0% |
!!! | TTTTTTTCAGGAAATGTTTG+TGG | + | chr7.1:23939348-23939367 | None:intergenic | 25.0% |
AAAAAGACTAGCAAATTAGG+TGG | - | chr7.1:23939388-23939407 | MS.gene024066:intron | 30.0% | |
AAAACATATTCAACATGGAC+AGG | + | chr7.1:23938867-23938886 | None:intergenic | 30.0% | |
AATCAACACAATCCATTACA+CGG | - | chr7.1:23939447-23939466 | MS.gene024066:intron | 30.0% | |
AATTAAGTTTCGACGGAAAA+AGG | + | chr7.1:23937118-23937137 | None:intergenic | 30.0% | |
ACATTTACACTTGCAAGTAA+AGG | + | chr7.1:23937243-23937262 | None:intergenic | 30.0% | |
ACTAAGTCTAGGAAACAATA+TGG | - | chr7.1:23937363-23937382 | MS.gene024066:intron | 30.0% | |
AGCTGTGTTTATTATTAGGT+TGG | - | chr7.1:23938584-23938603 | MS.gene024066:intron | 30.0% | |
ATCAAAACATCATTGCCATT+AGG | + | chr7.1:23938318-23938337 | None:intergenic | 30.0% | |
ATGATGTCCATATTCCATAT+TGG | + | chr7.1:23936644-23936663 | None:intergenic | 30.0% | |
ATGGATGGATATTGATGTAA+TGG | - | chr7.1:23937085-23937104 | MS.gene024066:CDS | 30.0% | |
ATGTTATTCTTTCAGGAAGA+TGG | - | chr7.1:23938445-23938464 | MS.gene024066:intron | 30.0% | |
ATGTTGCCAATTATCAAGAA+AGG | + | chr7.1:23938537-23938556 | None:intergenic | 30.0% | |
CAGTGTATGAAGTTTAAGTA+TGG | - | chr7.1:23937993-23938012 | MS.gene024066:intron | 30.0% | |
CATACTTAAACTTCATACAC+TGG | + | chr7.1:23937995-23938014 | None:intergenic | 30.0% | |
GGATCTCTTGATAAACTTTA+GGG | - | chr7.1:23937309-23937328 | MS.gene024066:intron | 30.0% | |
GGCAATATTACAAACTAAAG+TGG | - | chr7.1:23939421-23939440 | MS.gene024066:intron | 30.0% | |
GGTTTGTGTACTAATAATGT+AGG | - | chr7.1:23937210-23937229 | MS.gene024066:intron | 30.0% | |
GTACTAATAATGTAGGAACT+AGG | - | chr7.1:23937217-23937236 | MS.gene024066:intron | 30.0% | |
GTTAAGTGGAAAAGAAACAT+TGG | - | chr7.1:23936332-23936351 | MS.gene024066:CDS | 30.0% | |
TAAAATTACAACACGGTCAA+AGG | + | chr7.1:23939773-23939792 | None:intergenic | 30.0% | |
TAATTGTCATGTTTCAGTGT+TGG | + | chr7.1:23938673-23938692 | None:intergenic | 30.0% | |
TATACGAACTCAATACATAC+CGG | + | chr7.1:23938114-23938133 | None:intergenic | 30.0% | |
TCAAAGATTATGGTCACATT+CGG | - | chr7.1:23936247-23936266 | MS.gene024066:CDS | 30.0% | |
TGGATCTCTTGATAAACTTT+AGG | - | chr7.1:23937308-23937327 | MS.gene024066:intron | 30.0% | |
TGTTAACTTCATTTATCCCT+TGG | + | chr7.1:23937810-23937829 | None:intergenic | 30.0% | |
TTCAAAGTCACAGATATGTA+TGG | - | chr7.1:23939813-23939832 | MS.gene024066:CDS | 30.0% | |
TTTATGCTTATCAGTCAAAC+TGG | + | chr7.1:23938221-23938240 | None:intergenic | 30.0% | |
TTTGTCACACTCAAAGATTA+TGG | - | chr7.1:23936237-23936256 | MS.gene024066:CDS | 30.0% | |
! | AAATTAGGTGGTTTTCTAGA+CGG | - | chr7.1:23939400-23939419 | MS.gene024066:intron | 30.0% |
! | ATTTTGTTGGTATAGAAGTC+TGG | + | chr7.1:23939958-23939977 | None:intergenic | 30.0% |
! | CAAATTCTGCATTTGTTAAG+TGG | - | chr7.1:23936318-23936337 | MS.gene024066:CDS | 30.0% |
! | TGAAGTTTTCACAAAGTGAA+AGG | + | chr7.1:23936852-23936871 | None:intergenic | 30.0% |
! | TTAGACACTGACATTTTGTT+TGG | - | chr7.1:23939847-23939866 | MS.gene024066:CDS | 30.0% |
! | TTCAGATTTTCTTTCCCTAA+AGG | - | chr7.1:23939978-23939997 | MS.gene024066:CDS | 30.0% |
! | TTTAACAACCGAGTTATTTC+AGG | - | chr7.1:23937500-23937519 | MS.gene024066:intron | 30.0% |
!! | AAGCTTTAAGTTTGATCACT+TGG | - | chr7.1:23938163-23938182 | MS.gene024066:intron | 30.0% |
!! | ATTTTGTTTGGACAAAATGG+TGG | - | chr7.1:23939859-23939878 | MS.gene024066:CDS | 30.0% |
!! | CTTAATTTGCAGGAGTTATA+TGG | - | chr7.1:23937131-23937150 | MS.gene024066:CDS | 30.0% |
!! | GACATTTTGTTTGGACAAAA+TGG | - | chr7.1:23939856-23939875 | MS.gene024066:CDS | 30.0% |
!! | TATTAAAGTGTTGCAGCAAA+TGG | - | chr7.1:23938800-23938819 | MS.gene024066:CDS | 30.0% |
!! | TTTGTGGTTAATTTGTTAGG+AGG | + | chr7.1:23939332-23939351 | None:intergenic | 30.0% |
!!! | TATTTTCTGGAGTTCCAATA+TGG | - | chr7.1:23936627-23936646 | MS.gene024066:intron | 30.0% |
!!! | TTGTTCTTTGTTTTTCTCCA+TGG | - | chr7.1:23938889-23938908 | MS.gene024066:intron | 30.0% |
!!! | TTTTTAAGGTTAGTGTTGTC+TGG | - | chr7.1:23936808-23936827 | MS.gene024066:intron | 30.0% |
AAAACCCTCAACTTTCATGA+TGG | - | chr7.1:23939630-23939649 | MS.gene024066:intron | 35.0% | |
AACTTCATTTATCCCTTGGT+TGG | + | chr7.1:23937806-23937825 | None:intergenic | 35.0% | |
AAGTCACAGATATGTATGGT+TGG | - | chr7.1:23939817-23939836 | MS.gene024066:CDS | 35.0% | |
AATCTCCTCCTGAAATAACT+CGG | + | chr7.1:23937511-23937530 | None:intergenic | 35.0% | |
ACACAGCTTATAATAGGAAC+TGG | + | chr7.1:23938572-23938591 | None:intergenic | 35.0% | |
ACTTTGTGAAAACTTCAAGC+AGG | - | chr7.1:23936855-23936874 | MS.gene024066:intron | 35.0% | |
AGTCACAGATATGTATGGTT+GGG | - | chr7.1:23939818-23939837 | MS.gene024066:CDS | 35.0% | |
ATCAACACAATCCATTACAC+GGG | - | chr7.1:23939448-23939467 | MS.gene024066:intron | 35.0% | |
ATCCATTGATAAGAACCCAA+TGG | + | chr7.1:23937071-23937090 | None:intergenic | 35.0% | |
ATTATCTTTCCTCTTCTCTG+TGG | - | chr7.1:23938422-23938441 | MS.gene024066:intron | 35.0% | |
ATTGGGTTCTTATCAATGGA+TGG | - | chr7.1:23937070-23937089 | MS.gene024066:CDS | 35.0% | |
CACAGCTTATAATAGGAACT+GGG | + | chr7.1:23938571-23938590 | None:intergenic | 35.0% | |
CTTAAAGCTTACAGAAGAAC+AGG | + | chr7.1:23938153-23938172 | None:intergenic | 35.0% | |
CTTAACATGTGTATGCCATT+GGG | - | chr7.1:23937053-23937072 | MS.gene024066:CDS | 35.0% | |
GACGTATGTTAGCATGATTT+AGG | - | chr7.1:23938020-23938039 | MS.gene024066:intron | 35.0% | |
GTTTATGTCATTGGAGAAGA+TGG | - | chr7.1:23938042-23938061 | MS.gene024066:intron | 35.0% | |
TAATAGTGAAAGGGAGCAAA+AGG | + | chr7.1:23939165-23939184 | None:intergenic | 35.0% | |
TAGCAATGAAAAGACATCCA+GGG | + | chr7.1:23939088-23939107 | None:intergenic | 35.0% | |
TAGTCCATCATGAAAGTTGA+GGG | + | chr7.1:23939637-23939656 | None:intergenic | 35.0% | |
TATGGACATCATGCTTGAAA+TGG | - | chr7.1:23936652-23936671 | MS.gene024066:intron | 35.0% | |
TCCTGCAAATTAAGTTTCGA+CGG | + | chr7.1:23937125-23937144 | None:intergenic | 35.0% | |
TCTGTGGATGTTATTCTTTC+AGG | - | chr7.1:23938438-23938457 | MS.gene024066:intron | 35.0% | |
TCTTAACATGTGTATGCCAT+TGG | - | chr7.1:23937052-23937071 | MS.gene024066:intron | 35.0% | |
TGGAGTTCCAATATGGAATA+TGG | - | chr7.1:23936634-23936653 | MS.gene024066:intron | 35.0% | |
TTATTCTTTCAGGAAGATGG+CGG | - | chr7.1:23938448-23938467 | MS.gene024066:intron | 35.0% | |
TTCAATACATGCAGTCGATT+TGG | + | chr7.1:23938367-23938386 | None:intergenic | 35.0% | |
TTCAATTACTGAGCAAACAG+AGG | + | chr7.1:23937454-23937473 | None:intergenic | 35.0% | |
TTGTGTGTTTGAATTTCAGG+TGG | - | chr7.1:23939550-23939569 | MS.gene024066:intron | 35.0% | |
TTTGCAGGAGTTATATGGAA+AGG | - | chr7.1:23937136-23937155 | MS.gene024066:intron | 35.0% | |
! | AGTTTTCAAAATGTCCGTGA+AGG | - | chr7.1:23939226-23939245 | MS.gene024066:intron | 35.0% |
! | ATGTTTTCCTTCAAAACGAC+AGG | - | chr7.1:23939036-23939055 | MS.gene024066:CDS | 35.0% |
! | GGAAAGAAGTTTGAAACACT+TGG | - | chr7.1:23937384-23937403 | MS.gene024066:intron | 35.0% |
! | GTTGGTGTTTGAAATCTTAC+TGG | + | chr7.1:23938655-23938674 | None:intergenic | 35.0% |
! | TAGAATGGCAACAAAAGCAT+TGG | - | chr7.1:23936379-23936398 | MS.gene024066:CDS | 35.0% |
! | TGTGTGTTTGAATTTCAGGT+GGG | - | chr7.1:23939551-23939570 | MS.gene024066:intron | 35.0% |
!! | AAACTTCATACACTGGTTTC+AGG | + | chr7.1:23937988-23938007 | None:intergenic | 35.0% |
!! | CGTTAAAAGAGCTCTAAACT+TGG | + | chr7.1:23937656-23937675 | None:intergenic | 35.0% |
!! | CTGAGCACAGTTTTTAAGAA+TGG | + | chr7.1:23939512-23939531 | None:intergenic | 35.0% |
!! | TGGTTAATTTGTTAGGAGGA+GGG | + | chr7.1:23939328-23939347 | None:intergenic | 35.0% |
!!! | AATGATTTTAGAGCCAACCA+AGG | - | chr7.1:23937790-23937809 | MS.gene024066:intron | 35.0% |
!!! | ATGATTTTAGAGCCAACCAA+GGG | - | chr7.1:23937791-23937810 | MS.gene024066:intron | 35.0% |
AAAAAGATCGAGCTTAAGCC+AGG | - | chr7.1:23938472-23938491 | MS.gene024066:intron | 40.0% | |
AAAACTCTACTTGTCCTCTC+AGG | - | chr7.1:23939886-23939905 | MS.gene024066:CDS | 40.0% | |
AAAAGATCGAGCTTAAGCCA+GGG | - | chr7.1:23938473-23938492 | MS.gene024066:intron | 40.0% | |
AAAGGTGACAGCTTGATAGA+AGG | - | chr7.1:23937154-23937173 | MS.gene024066:intron | 40.0% | |
ACTATAGCAGCTACTAGTGT+TGG | - | chr7.1:23936212-23936231 | MS.gene024066:CDS | 40.0% | |
ACTTGACATGCTTAGGTCAA+AGG | - | chr7.1:23937189-23937208 | MS.gene024066:intron | 40.0% | |
AGGGGAAAATGTTAGTAGCA+GGG | + | chr7.1:23939309-23939328 | None:intergenic | 40.0% | |
ATCTCACAGATGCTCAAGAA+TGG | - | chr7.1:23939129-23939148 | MS.gene024066:intron | 40.0% | |
ATTACTGAGCAAACAGAGGA+AGG | + | chr7.1:23937450-23937469 | None:intergenic | 40.0% | |
CCAACAACTCAACTAAGTCT+AGG | - | chr7.1:23937352-23937371 | MS.gene024066:intron | 40.0% | |
CTAAGCATGTCAAGTGTTTC+AGG | + | chr7.1:23937184-23937203 | None:intergenic | 40.0% | |
CTGAAACACTTGACATGCTT+AGG | - | chr7.1:23937182-23937201 | MS.gene024066:intron | 40.0% | |
CTGGATATCAGTATGTTGGT+GGG | - | chr7.1:23938088-23938107 | MS.gene024066:intron | 40.0% | |
CTTGCTGGATATCAGTATGT+TGG | - | chr7.1:23938084-23938103 | MS.gene024066:intron | 40.0% | |
GAATAACATCCACAGAGAAG+AGG | + | chr7.1:23938434-23938453 | None:intergenic | 40.0% | |
GATGAAGATGTATGTACTCC+TGG | - | chr7.1:23938511-23938530 | MS.gene024066:intron | 40.0% | |
GGTATAGAAGTCTGGTTGTA+TGG | + | chr7.1:23939950-23939969 | None:intergenic | 40.0% | |
GTAAGATGAATCGTGCATCA+AGG | - | chr7.1:23937675-23937694 | MS.gene024066:intron | 40.0% | |
GTAGCAATGAAAAGACATCC+AGG | + | chr7.1:23939089-23939108 | None:intergenic | 40.0% | |
GTAGTCCATCATGAAAGTTG+AGG | + | chr7.1:23939638-23939657 | None:intergenic | 40.0% | |
GTCACAGATATGTATGGTTG+GGG | - | chr7.1:23939819-23939838 | MS.gene024066:CDS | 40.0% | |
GTTGAAACCTAGACCTCTTT+CGG | + | chr7.1:23939286-23939305 | None:intergenic | 40.0% | |
TATTCTTTCAGGAAGATGGC+GGG | - | chr7.1:23938449-23938468 | MS.gene024066:intron | 40.0% | |
TCAACACAATCCATTACACG+GGG | - | chr7.1:23939449-23939468 | MS.gene024066:intron | 40.0% | |
TCTCACAGATGCTCAAGAAT+GGG | - | chr7.1:23939130-23939149 | MS.gene024066:intron | 40.0% | |
TGCCATTGGGTTCTTATCAA+TGG | - | chr7.1:23937066-23937085 | MS.gene024066:CDS | 40.0% | |
TTCCTTCAAAACGACAGGTA+TGG | - | chr7.1:23939041-23939060 | MS.gene024066:CDS | 40.0% | |
TTGTGAAAACTTCAAGCAGG+TGG | - | chr7.1:23936858-23936877 | MS.gene024066:intron | 40.0% | |
! | AACAACCGAGTTATTTCAGG+AGG | - | chr7.1:23937503-23937522 | MS.gene024066:intron | 40.0% |
! | CCTAGACTTAGTTGAGTTGT+TGG | + | chr7.1:23937355-23937374 | None:intergenic | 40.0% |
! | GTGTGTTTGAATTTCAGGTG+GGG | - | chr7.1:23939552-23939571 | MS.gene024066:intron | 40.0% |
! | TCCTGGCCTTTCTTGATAAT+TGG | - | chr7.1:23938528-23938547 | MS.gene024066:intron | 40.0% |
! | TGTGTTTGAATTTCAGGTGG+GGG | - | chr7.1:23939553-23939572 | MS.gene024066:intron | 40.0% |
!! | GGTTAATTTGTTAGGAGGAG+GGG | + | chr7.1:23939327-23939346 | None:intergenic | 40.0% |
!! | GTGGTTAATTTGTTAGGAGG+AGG | + | chr7.1:23939329-23939348 | None:intergenic | 40.0% |
!! | TCCGTCGAAACTTAATTTGC+AGG | - | chr7.1:23937121-23937140 | MS.gene024066:CDS | 40.0% |
!!! | TTCCATACCTGTCGTTTTGA+AGG | + | chr7.1:23939046-23939065 | None:intergenic | 40.0% |
AACCCATACCACAAAGGACA+GGG | + | chr7.1:23939257-23939276 | None:intergenic | 45.0% | |
AACTTCAAGCAGGTGGCAAA+AGG | - | chr7.1:23936865-23936884 | MS.gene024066:intron | 45.0% | |
ACTTCAAGCAGGTGGCAAAA+GGG | - | chr7.1:23936866-23936885 | MS.gene024066:intron | 45.0% | |
ATGAATCGTGCATCAAGGCT+TGG | - | chr7.1:23937680-23937699 | MS.gene024066:intron | 45.0% | |
CATCTTCATCATGCTCCATC+AGG | + | chr7.1:23938501-23938520 | None:intergenic | 45.0% | |
CTGTGTATACGTGAAAACCC+TGG | - | chr7.1:23939068-23939087 | MS.gene024066:intron | 45.0% | |
GAGGGGAAAATGTTAGTAGC+AGG | + | chr7.1:23939310-23939329 | None:intergenic | 45.0% | |
GCCAATTATCAAGAAAGGCC+AGG | + | chr7.1:23938532-23938551 | None:intergenic | 45.0% | |
GCTGGATATCAGTATGTTGG+TGG | - | chr7.1:23938087-23938106 | MS.gene024066:intron | 45.0% | |
GGGGAAAATGTTAGTAGCAG+GGG | + | chr7.1:23939308-23939327 | None:intergenic | 45.0% | |
TCATACAGCTGCAGCCTTTA+GGG | + | chr7.1:23939995-23940014 | None:intergenic | 45.0% | |
TCATGCATCAGATGGTCACT+TGG | + | chr7.1:23938285-23938304 | None:intergenic | 45.0% | |
TCTGGTTGTATGGAGTTGTC+TGG | + | chr7.1:23939940-23939959 | None:intergenic | 45.0% | |
TGCTGAACTTGATGCTTGCA+TGG | - | chr7.1:23937865-23937884 | MS.gene024066:intron | 45.0% | |
TGGAGAAGATGGCATCTTGA+AGG | - | chr7.1:23938053-23938072 | MS.gene024066:intron | 45.0% | |
TGTCTCAACCCATACCACAA+AGG | + | chr7.1:23939263-23939282 | None:intergenic | 45.0% | |
! | AGCTCATCAGCATTCTGAAG+CGG | + | chr7.1:23936410-23936429 | None:intergenic | 45.0% |
! | ATATCAGTATGTTGGTGGGC+CGG | - | chr7.1:23938092-23938111 | MS.gene024066:intron | 45.0% |
! | GAGGGTTTTCCAACAACTAG+TGG | + | chr7.1:23939619-23939638 | None:intergenic | 45.0% |
! | TAGGTTGGAGCAGTTGTTGT+GGG | - | chr7.1:23938599-23938618 | MS.gene024066:intron | 45.0% |
!! | TTAGGTTGGAGCAGTTGTTG+TGG | - | chr7.1:23938598-23938617 | MS.gene024066:intron | 45.0% |
ACAGATGCTCAAGAATGGGC+AGG | - | chr7.1:23939134-23939153 | MS.gene024066:intron | 50.0% | |
ACCATCTGATGCATGAGCAG+AGG | - | chr7.1:23938289-23938308 | MS.gene024066:intron | 50.0% | |
ACCTCTGCTCATGCATCAGA+TGG | + | chr7.1:23938293-23938312 | None:intergenic | 50.0% | |
ACTTGGCCTGAATGTCAACG+CGG | - | chr7.1:23937401-23937420 | MS.gene024066:intron | 50.0% | |
AGCCCTGTCCTTTGTGGTAT+GGG | - | chr7.1:23939252-23939271 | MS.gene024066:intron | 50.0% | |
CAACCCATACCACAAAGGAC+AGG | + | chr7.1:23939258-23939277 | None:intergenic | 50.0% | |
CAACGCGAACCACTAGTTGT+TGG | - | chr7.1:23939607-23939626 | MS.gene024066:intron | 50.0% | |
CATGAGCAGAGGTGACCTAA+TGG | - | chr7.1:23938300-23938319 | MS.gene024066:intron | 50.0% | |
CTTCAAGCAGGTGGCAAAAG+GGG | - | chr7.1:23936867-23936886 | MS.gene024066:intron | 50.0% | |
TAGCCCTGTCCTTTGTGGTA+TGG | - | chr7.1:23939251-23939270 | MS.gene024066:intron | 50.0% | |
TATCGTACTGCCCCGTGTAA+TGG | + | chr7.1:23939462-23939481 | None:intergenic | 50.0% | |
TGAGACACCGAAAGAGGTCT+AGG | - | chr7.1:23939276-23939295 | MS.gene024066:intron | 50.0% | |
TTGAAGGAGCTTGAGCTTGC+TGG | - | chr7.1:23938069-23938088 | MS.gene024066:intron | 50.0% | |
TTGTCTGGACTCTGTAGCAC+CGG | + | chr7.1:23939925-23939944 | None:intergenic | 50.0% | |
! | AATTTCAGGTGGGGGCTCTA+TGG | - | chr7.1:23939561-23939580 | MS.gene024066:intron | 50.0% |
! | ATGGGTTGAGACACCGAAAG+AGG | - | chr7.1:23939270-23939289 | MS.gene024066:intron | 50.0% |
! | GACTAACCGCGTTGACATTC+AGG | + | chr7.1:23937410-23937429 | None:intergenic | 50.0% |
! | TCTATGGTTGGTGCTCTCGT+TGG | - | chr7.1:23939577-23939596 | MS.gene024066:intron | 50.0% |
!! | CAAGGCTTGGTCTTGAGGAA+TGG | - | chr7.1:23937693-23937712 | MS.gene024066:CDS | 50.0% |
!! | CTTGGTCTTGAGGAATGGAG+AGG | - | chr7.1:23937698-23937717 | MS.gene024066:CDS | 50.0% |
!! | TGCATCAAGGCTTGGTCTTG+AGG | - | chr7.1:23937688-23937707 | MS.gene024066:intron | 50.0% |
AGGACAGGGCTACTCCTTCA+CGG | + | chr7.1:23939243-23939262 | None:intergenic | 55.0% | |
AGGAGTAGCCCTGTCCTTTG+TGG | - | chr7.1:23939246-23939265 | MS.gene024066:intron | 55.0% | |
GCAATGTGGTGACACCTGAG+AGG | + | chr7.1:23939903-23939922 | None:intergenic | 55.0% | |
GCTTAAGCCAGGGTTCCTGA+TGG | - | chr7.1:23938483-23938502 | MS.gene024066:intron | 55.0% | |
TCATGCTCCATCAGGAACCC+TGG | + | chr7.1:23938493-23938512 | None:intergenic | 55.0% | |
! | CTCAGGTGTCACCACATTGC+CGG | - | chr7.1:23939903-23939922 | MS.gene024066:CDS | 55.0% |
!! | ACTCTGTAGCACCGGCAATG+TGG | + | chr7.1:23939917-23939936 | None:intergenic | 55.0% |
TCAGGTGGGGGCTCTATGGT+TGG | - | chr7.1:23939565-23939584 | MS.gene024066:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 23936194 | 23940014 | 23936194 | ID=MS.gene024066 |
chr7.1 | mRNA | 23936194 | 23940014 | 23936194 | ID=MS.gene024066.t1;Parent=MS.gene024066 |
chr7.1 | exon | 23939741 | 23940014 | 23939741 | ID=MS.gene024066.t1.exon1;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23939741 | 23940014 | 23939741 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23938998 | 23939065 | 23938998 | ID=MS.gene024066.t1.exon2;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23938998 | 23939065 | 23938998 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23938786 | 23938878 | 23938786 | ID=MS.gene024066.t1.exon3;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23938786 | 23938878 | 23938786 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23938615 | 23938686 | 23938615 | ID=MS.gene024066.t1.exon4;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23938615 | 23938686 | 23938615 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23938095 | 23938166 | 23938095 | ID=MS.gene024066.t1.exon5;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23938095 | 23938166 | 23938095 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23937689 | 23937748 | 23937689 | ID=MS.gene024066.t1.exon6;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23937689 | 23937748 | 23937689 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23937554 | 23937606 | 23937554 | ID=MS.gene024066.t1.exon7;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23937554 | 23937606 | 23937554 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23937053 | 23937150 | 23937053 | ID=MS.gene024066.t1.exon8;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23937053 | 23937150 | 23937053 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23936540 | 23936639 | 23936540 | ID=MS.gene024066.t1.exon9;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23936540 | 23936639 | 23936540 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
chr7.1 | exon | 23936194 | 23936404 | 23936194 | ID=MS.gene024066.t1.exon10;Parent=MS.gene024066.t1 |
chr7.1 | CDS | 23936194 | 23936404 | 23936194 | ID=cds.MS.gene024066.t1;Parent=MS.gene024066.t1 |
Gene Sequence |
Protein sequence |