AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52606


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52606.t1 MTR_7g080530 99.340 303 2 0 1 303 65 367 0.0 621
MS.gene52606.t1 MTR_2g027270 65.772 298 102 0 4 301 5 302 9.51e-146 412
MS.gene52606.t1 MTR_2g027270 67.843 255 82 0 47 301 1 255 1.01e-125 359
MS.gene52606.t1 MTR_7g080530 97.688 173 4 0 1 173 65 237 3.14e-120 346
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52606.t1 AT5G36790 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36700 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36700 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36700 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36790 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36790 87.829 304 36 1 1 303 59 362 0.0 544
MS.gene52606.t1 AT5G36700 89.416 274 28 1 1 273 59 332 2.19e-179 498
MS.gene52606.t1 AT5G47760 64.548 299 103 2 1 298 1 297 4.78e-144 407
MS.gene52606.t1 AT5G47760 60.965 228 82 4 1 226 1 223 2.67e-95 281

Find 54 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATTTGCAGGAGTTATA+TGG 0.228079 7.4:-25790468 MS.gene52606:intron
TCATACAGCTGCAGCCTTTA+GGG 0.290646 7.4:+25787542 None:intergenic
CTAAGCATGTCAAGTGTTTC+AGG 0.291680 7.4:+25790418 None:intergenic
TGATTTCCCAAAAGATAAAA+AGG 0.297316 7.4:-25790027 MS.gene52606:intron
TTGAAGGAGCTTGAGCTTGC+TGG 0.325512 7.4:-25789476 MS.gene52606:CDS
ATCATACAGCTGCAGCCTTT+AGG 0.327656 7.4:+25787541 None:intergenic
GACTAACCGCGTTGACATTC+AGG 0.336383 7.4:+25790192 None:intergenic
CCTCGACTTAGTTGAGTTGT+TGG 0.340353 7.4:+25790247 None:intergenic
ATGATTTAGGTTTATGTCAT+TGG 0.349189 7.4:-25789512 MS.gene52606:intron
ACTAAGTCGAGGAAACAATA+TGG 0.400075 7.4:-25790236 MS.gene52606:CDS
GCTTAAGCCAGGGTTCTTGA+TGG 0.403121 7.4:-25789059 MS.gene52606:CDS
TAGGTTGGAGCAGTTGTTGT+GGG 0.404771 7.4:-25788942 MS.gene52606:CDS
GTTTATGTCATTGGAGAAGA+TGG 0.414677 7.4:-25789503 MS.gene52606:CDS
AGTCACAGATATGTATGGTT+GGG 0.422366 7.4:-25787716 MS.gene52606:CDS
ATCTCACAGACGCTCAAGAA+TGG 0.434908 7.4:-25788421 MS.gene52606:CDS
ATGTTATTCTTTCAGGAAGA+TGG 0.443633 7.4:-25789097 MS.gene52606:intron
TCTGGTTGTATGGAGTTGTC+TGG 0.445662 7.4:+25787597 None:intergenic
CTCGGGTGTCACCACACTGC+CGG 0.450312 7.4:-25787631 MS.gene52606:CDS
TTCAAAGTCACAGATATGTA+TGG 0.459793 7.4:-25787721 MS.gene52606:CDS
CAACGCGAACCACTAGTTGT+TGG 0.464212 7.4:-25787926 MS.gene52606:CDS
GGTATAGAAGTCTGGTTGTA+TGG 0.467427 7.4:+25787587 None:intergenic
ACTTGACATGCTTAGGTCAA+AGG 0.475749 7.4:-25790410 MS.gene52606:intron
CAAAACTCTACTTGTCCTCT+CGG 0.475958 7.4:-25787649 MS.gene52606:CDS
TAGTCCATCATGAAAGTTGA+GGG 0.477251 7.4:+25787899 None:intergenic
AAAGGTGACAGCTTGATAGA+AGG 0.481088 7.4:-25790445 MS.gene52606:CDS
TCTCACAGACGCTCAAGAAT+GGG 0.490894 7.4:-25788420 MS.gene52606:CDS
AAAACCCTCAACTTTCATGA+TGG 0.494302 7.4:-25787903 MS.gene52606:CDS
TGGAGAAGATGGCATCTTGA+AGG 0.505999 7.4:-25789492 MS.gene52606:CDS
CTGAAACACTTGACATGCTT+AGG 0.507446 7.4:-25790417 MS.gene52606:CDS
TAGAATGGCAACAAAAGCAT+TGG 0.508024 7.4:-25791217 None:intergenic
GCTGGATATCAGTATGTTGG+TGG 0.534636 7.4:-25789458 MS.gene52606:CDS
TTAGGTTGGAGCAGTTGTTG+TGG 0.537281 7.4:-25788943 MS.gene52606:intron
GGAAAGAAGTTTGAAACACT+TGG 0.541519 7.4:-25790215 MS.gene52606:CDS
GTAGCAATGAAAAGACATCC+AGG 0.552022 7.4:+25788464 None:intergenic
TTTGCAGGAGTTATATGGAA+AGG 0.553212 7.4:-25790463 MS.gene52606:intron
GTCACAGATATGTATGGTTG+GGG 0.555276 7.4:-25787715 MS.gene52606:CDS
AAGTCACAGATATGTATGGT+TGG 0.555635 7.4:-25787717 MS.gene52606:CDS
TCTATGGTTGGTGCTCTCGT+TGG 0.556722 7.4:-25787956 MS.gene52606:CDS
AAAACTCTACTTGTCCTCTC+GGG 0.557423 7.4:-25787648 MS.gene52606:CDS
CTTGCTGGATATCAGTATGT+TGG 0.590796 7.4:-25789461 MS.gene52606:CDS
ATATCAGTATGTTGGTGGGC+CGG 0.592199 7.4:-25789453 MS.gene52606:intron
TAGCAATGAAAAGACATCCA+GGG 0.592708 7.4:+25788465 None:intergenic
ACAGACGCTCAAGAATGGGC+AGG 0.593223 7.4:-25788416 MS.gene52606:intron
TCATGCTCCATCAAGAACCC+TGG 0.604696 7.4:+25789052 None:intergenic
TTGTCTGGACTCTGTAGCAC+CGG 0.605890 7.4:+25787612 None:intergenic
AGCTCATCAGCATTCTGAAG+CGG 0.606940 7.4:+25791189 None:intergenic
GTAGTCCATCATGAAAGTTG+AGG 0.626905 7.4:+25787898 None:intergenic
CTGTGTATACGTGAAAACCC+TGG 0.633110 7.4:-25788482 MS.gene52606:CDS
CTGGATATCAGTATGTTGGT+GGG 0.645009 7.4:-25789457 MS.gene52606:CDS
ACTCTGTAGCACCGGCAGTG+TGG 0.653090 7.4:+25787620 None:intergenic
AAAAGATCGAGCTTAAGCCA+GGG 0.676471 7.4:-25789069 MS.gene52606:CDS
CCAACAACTCAACTAAGTCG+AGG 0.694811 7.4:-25790247 MS.gene52606:CDS
GCAGTGTGGTGACACCCGAG+AGG 0.733934 7.4:+25787634 None:intergenic
ACTTGGCCTGAATGTCAACG+CGG 0.778429 7.4:-25790198 MS.gene52606:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAAATAATGATAAAA+TGG + chr7.4:25789412-25789431 None:intergenic 10.0%
!! ATAATGTCATGAAATAAAAT+CGG + chr7.4:25790394-25790413 None:intergenic 15.0%
!!! AATTTTGAAAACTCTTTTTT+GGG + chr7.4:25790567-25790586 None:intergenic 15.0%
!!! ATTTCTTAATTTTCTAATCA+CGG + chr7.4:25789947-25789966 None:intergenic 15.0%
!!! TCAAATTACATGTATTTTTA+AGG - chr7.4:25787955-25787974 MS.gene52606:CDS 15.0%
!! AATAAACACACTCTTATAAT+AGG + chr7.4:25789791-25789810 None:intergenic 20.0%
!! AGAAAATTAAGAAATTTCGT+TGG - chr7.4:25789952-25789971 MS.gene52606:intron 20.0%
!! ATAAGATGTTAATAAGTTAG+TGG - chr7.4:25787759-25787778 MS.gene52606:intron 20.0%
!! ATAATGAAATCAATACATGA+GGG + chr7.4:25788135-25788154 None:intergenic 20.0%
!! ATAGTATTCTAATTAGTTGA+AGG + chr7.4:25788935-25788954 None:intergenic 20.0%
!! ATTATGACATGTTTATAAAC+CGG - chr7.4:25788969-25788988 MS.gene52606:intron 20.0%
!! CAACTAATTAGAATACTATA+GGG - chr7.4:25788936-25788955 MS.gene52606:CDS 20.0%
!! TAATGTCATGAAATAAAATC+GGG + chr7.4:25790393-25790412 None:intergenic 20.0%
!! TAATTCCATACTAATAAAAG+AGG + chr7.4:25789602-25789621 None:intergenic 20.0%
!! TAGTATTCTAATTAGTTGAA+GGG + chr7.4:25788934-25788953 None:intergenic 20.0%
!! TATATTTGTGTTTGAATTTC+AGG - chr7.4:25790769-25790788 MS.gene52606:intron 20.0%
!! TCAACTAATTAGAATACTAT+AGG - chr7.4:25788935-25788954 MS.gene52606:CDS 20.0%
!! TTATACAATTACTAAGCAAA+CGG + chr7.4:25788613-25788632 None:intergenic 20.0%
!!! AAGAAAATCTGAAATTTTGT+TGG + chr7.4:25791192-25791211 None:intergenic 20.0%
!!! ATAAGAGTGTGTTTATTATT+AGG - chr7.4:25789794-25789813 MS.gene52606:intron 20.0%
!!! ATGTTACCTTTTTATCTTTT+GGG + chr7.4:25788737-25788756 None:intergenic 20.0%
!!! ATTACATGTATTTTTAAGGT+TGG - chr7.4:25787959-25787978 MS.gene52606:CDS 20.0%
!!! ATTTTGAAAACTCTTTTTTG+GGG + chr7.4:25790566-25790585 None:intergenic 20.0%
!!! GAATTTTGAAAACTCTTTTT+TGG + chr7.4:25790568-25790587 None:intergenic 20.0%
!!! GATATTTTTAAATTCTGGTA+AGG - chr7.4:25790185-25790204 MS.gene52606:intron 20.0%
!!! TATATTCTGTTATTTTTGCT+AGG - chr7.4:25787884-25787903 MS.gene52606:intron 20.0%
!!! TATGTTACCTTTTTATCTTT+TGG + chr7.4:25788738-25788757 None:intergenic 20.0%
!!! TCTAAAATCATTTAATTTCC+CGG + chr7.4:25788991-25789010 None:intergenic 20.0%
!!! TTAGAATTTCTTTTGAGATT+TGG - chr7.4:25788444-25788463 MS.gene52606:CDS 20.0%
!!! TTGATGATTAAGTTTTTTCT+AGG - chr7.4:25787687-25787706 MS.gene52606:CDS 20.0%
!!! TTGTAATTTTATTGAACAAC+AGG - chr7.4:25791003-25791022 MS.gene52606:intron 20.0%
!!! TTTCTTAATTTTCTAATCAC+GGG + chr7.4:25789946-25789965 None:intergenic 20.0%
! AAACATGTCATAATTCATGT+TGG + chr7.4:25788963-25788982 None:intergenic 25.0%
! AACATGTCATAATTCATGTT+GGG + chr7.4:25788962-25788981 None:intergenic 25.0%
! AATTAAGTATCAACGGAAAA+AGG + chr7.4:25788274-25788293 None:intergenic 25.0%
! AGTATTCTAATTAGTTGAAG+GGG + chr7.4:25788933-25788952 None:intergenic 25.0%
! ATATTTAAACTTGTGCATGT+AGG - chr7.4:25790060-25790079 MS.gene52606:CDS 25.0%
! ATCAAAACATCATTGTCATT+AGG + chr7.4:25789530-25789549 None:intergenic 25.0%
! ATGCTGATAAAATTTAGATC+TGG + chr7.4:25790120-25790139 None:intergenic 25.0%
! CATAATGAAATCAATACATG+AGG + chr7.4:25788136-25788155 None:intergenic 25.0%
! CATGCATTATCATTCAAAAT+TGG + chr7.4:25789458-25789477 None:intergenic 25.0%
! CTCTATTATTGAATTGGAAA+AGG - chr7.4:25787638-25787657 MS.gene52606:CDS 25.0%
! GAATTGGAAAAGGATAAAAA+TGG - chr7.4:25787648-25787667 MS.gene52606:CDS 25.0%
! GCTTCAAAATATTTAACAAC+TGG - chr7.4:25788645-25788664 MS.gene52606:intron 25.0%
! TAAACATTAGGGAAAAAGAT+TGG - chr7.4:25788476-25788495 MS.gene52606:CDS 25.0%
! TGATTTCCCAAAAGATAAAA+AGG - chr7.4:25788728-25788747 MS.gene52606:intron 25.0%
! TGTTAACTTCATTTATCACT+TGG + chr7.4:25789019-25789038 None:intergenic 25.0%
! TTATGACATGTTTATAAACC+GGG - chr7.4:25788970-25788989 MS.gene52606:intron 25.0%
! TTATGCCTCTATTATTGAAT+TGG - chr7.4:25787632-25787651 MS.gene52606:CDS 25.0%
! TTATGTTAAGCATATACTAC+TGG - chr7.4:25789099-25789118 MS.gene52606:intron 25.0%
!! ACATATATCATCTTTTGCTT+TGG - chr7.4:25788753-25788772 MS.gene52606:intron 25.0%
!! ACTTTTATCTTTGATTGTGA+CGG - chr7.4:25787605-25787624 MS.gene52606:CDS 25.0%
!! AGATCTAAATTTTATCAGCA+TGG - chr7.4:25790119-25790138 MS.gene52606:intron 25.0%
!! ATGATTTAGGTTTATGTCAT+TGG - chr7.4:25789243-25789262 MS.gene52606:intron 25.0%
!! ATTTTATTGAACAACAGGTT+TGG - chr7.4:25791008-25791027 MS.gene52606:intron 25.0%
!! ATTTTTAAATTCTGGTAAGG+TGG - chr7.4:25790188-25790207 MS.gene52606:intron 25.0%
!! CTTTTCCAATTCAATAATAG+AGG + chr7.4:25787640-25787659 None:intergenic 25.0%
!! TTCTTAATTTTCTAATCACG+GGG + chr7.4:25789945-25789964 None:intergenic 25.0%
!! TTGAACCTCTTTTATTAGTA+TGG - chr7.4:25789594-25789613 MS.gene52606:intron 25.0%
!!! AGCTTTTAATTTTGATCACT+TGG - chr7.4:25789374-25789393 MS.gene52606:intron 25.0%
!!! AGGGTGATATTTTTAAATTC+TGG - chr7.4:25790180-25790199 MS.gene52606:intron 25.0%
!!! GTTTGTGGTTAATTTGTTAA+GGG + chr7.4:25790539-25790558 None:intergenic 25.0%
!!! TGTTTGTGGTTAATTTGTTA+AGG + chr7.4:25790540-25790559 None:intergenic 25.0%
!!! TTAGTGGTTATGTTATTTTC+TGG - chr7.4:25787775-25787794 MS.gene52606:intron 25.0%
!!! TTTATCTTTTGGGAAATCAA+TGG + chr7.4:25788727-25788746 None:intergenic 25.0%
!!! TTTGTGGTTAATTTGTTAAG+GGG + chr7.4:25790538-25790557 None:intergenic 25.0%
AAAAAGACTAGCGAATTAGA+TGG - chr7.4:25790624-25790643 MS.gene52606:intron 30.0%
AACTTCATTTATCACTTGGT+TGG + chr7.4:25789015-25789034 None:intergenic 30.0%
ACACTCTTATAATAGGAACA+GGG + chr7.4:25789784-25789803 None:intergenic 30.0%
AGATGGTACATTACAAACTA+AGG - chr7.4:25790641-25790660 MS.gene52606:intron 30.0%
ATGATGTCCATATTCCATAT+TGG + chr7.4:25787805-25787824 None:intergenic 30.0%
ATGTTATTCTTTCAGGAAGA+TGG - chr7.4:25789658-25789677 MS.gene52606:intron 30.0%
ATGTTGCCAATTATCAAGAA+AGG + chr7.4:25789750-25789769 None:intergenic 30.0%
ATTTGTGTTTGAATTTCAGG+TGG - chr7.4:25790772-25790791 MS.gene52606:intron 30.0%
CATGAAATAAAATCGGGTAA+TGG + chr7.4:25790387-25790406 None:intergenic 30.0%
CTTAATATGTGTATGCCATT+GGG - chr7.4:25788209-25788228 MS.gene52606:intron 30.0%
GAGTGTGTTTATTATTAGGT+TGG - chr7.4:25789798-25789817 MS.gene52606:intron 30.0%
GGATCTCTTGATAAACATTA+GGG - chr7.4:25788465-25788484 MS.gene52606:CDS 30.0%
GGTTTGTGTACTAATAATGT+AGG - chr7.4:25788366-25788385 MS.gene52606:intron 30.0%
GTACTAATAATGTAGGAACT+AGG - chr7.4:25788373-25788392 MS.gene52606:intron 30.0%
TAAAATTACAACACAGTCAG+AGG + chr7.4:25790994-25791013 None:intergenic 30.0%
TAATTGTCATGTTTCAGTGT+TGG + chr7.4:25789887-25789906 None:intergenic 30.0%
TATACGAACTCAATACATAC+CGG + chr7.4:25789324-25789343 None:intergenic 30.0%
TATACTTCAACTTCATACAC+TGG + chr7.4:25789205-25789224 None:intergenic 30.0%
TCCTGCAAATTAAGTATCAA+CGG + chr7.4:25788281-25788300 None:intergenic 30.0%
TCTGTAAACAAACTTGCAAA+TGG + chr7.4:25790963-25790982 None:intergenic 30.0%
TCTTAATATGTGTATGCCAT+TGG - chr7.4:25788208-25788227 MS.gene52606:intron 30.0%
TGGATCTCTTGATAAACATT+AGG - chr7.4:25788464-25788483 MS.gene52606:CDS 30.0%
TTAAAAGCTTACAGAAGAAC+AGG + chr7.4:25789363-25789382 None:intergenic 30.0%
TTCAAAGTCACAGATATGTA+TGG - chr7.4:25791034-25791053 MS.gene52606:intron 30.0%
! ACTTTTACACTTGCAAGTAA+AGG + chr7.4:25788399-25788418 None:intergenic 30.0%
! ATTTTGTTGGTATAGAAGTC+TGG + chr7.4:25791179-25791198 None:intergenic 30.0%
! TTAGACACTGACATTTTGTT+TGG - chr7.4:25791068-25791087 MS.gene52606:intron 30.0%
! TTCAGATTTTCTTTCCCTAA+AGG - chr7.4:25791199-25791218 MS.gene52606:CDS 30.0%
! TTCTAGCCTTTCTTGATAAT+TGG - chr7.4:25789741-25789760 MS.gene52606:intron 30.0%
! TTTGTGTTTGAATTTCAGGT+GGG - chr7.4:25790773-25790792 MS.gene52606:intron 30.0%
! TTTTATCAGCATGGAACATT+TGG - chr7.4:25790128-25790147 MS.gene52606:intron 30.0%
!! ATTTTGTTTGGACAAAATGG+TGG - chr7.4:25791080-25791099 MS.gene52606:intron 30.0%
!! CTTAATTTGCAGGAGTTATA+TGG - chr7.4:25788287-25788306 MS.gene52606:intron 30.0%
!! GACATTTTGTTTGGACAAAA+TGG - chr7.4:25791077-25791096 MS.gene52606:intron 30.0%
!! TATTAAAGTGTTGCAGCAAA+TGG - chr7.4:25790005-25790024 MS.gene52606:intron 30.0%
!!! ATGTATTTTAGCATGTAGCA+AGG - chr7.4:25790160-25790179 MS.gene52606:intron 30.0%
!!! ATGTTTTCCTTTGAAATGAC+AGG - chr7.4:25790241-25790260 MS.gene52606:CDS 30.0%
!!! TATTTTCTGGAGTTCCAATA+TGG - chr7.4:25787788-25787807 MS.gene52606:intron 30.0%
!!! TGTATTTTAGCATGTAGCAA+GGG - chr7.4:25790161-25790180 MS.gene52606:intron 30.0%
AAAACCCTCAACTTTCATGA+TGG - chr7.4:25790852-25790871 MS.gene52606:intron 35.0%
AAATTTAGATCTGGCCATAG+AGG + chr7.4:25790111-25790130 None:intergenic 35.0%
AAGTCACAGATATGTATGGT+TGG - chr7.4:25791038-25791057 MS.gene52606:intron 35.0%
AATCAACACGATCCATTACA+CGG - chr7.4:25790670-25790689 MS.gene52606:intron 35.0%
ACTAAGTCGAGGAAACAATA+TGG - chr7.4:25788519-25788538 MS.gene52606:intron 35.0%
AGTCACAGATATGTATGGTT+GGG - chr7.4:25791039-25791058 MS.gene52606:intron 35.0%
AGTTAAAAGAGCTCCAAACT+TGG + chr7.4:25788813-25788832 None:intergenic 35.0%
ATATATCAGATTCGACTACC+AGG + chr7.4:25790754-25790773 None:intergenic 35.0%
ATCCATTGATAAGAACCCAA+TGG + chr7.4:25788227-25788246 None:intergenic 35.0%
ATGATGCAAAAATTTCCTCC+TGG + chr7.4:25788677-25788696 None:intergenic 35.0%
ATTGGGTTCTTATCAATGGA+TGG - chr7.4:25788226-25788245 MS.gene52606:intron 35.0%
CACACTCTTATAATAGGAAC+AGG + chr7.4:25789785-25789804 None:intergenic 35.0%
GACATACGTTAGCATGATTT+AGG - chr7.4:25789230-25789249 MS.gene52606:intron 35.0%
GTTTATGTCATTGGAGAAGA+TGG - chr7.4:25789252-25789271 MS.gene52606:intron 35.0%
TACAATTACTAAGCAAACGG+AGG + chr7.4:25788610-25788629 None:intergenic 35.0%
TAGCAATGAAAAGACATCCA+GGG + chr7.4:25790293-25790312 None:intergenic 35.0%
TAGTCCATCATGAAAGTTGA+GGG + chr7.4:25790859-25790878 None:intergenic 35.0%
TATATCAGATTCGACTACCA+GGG + chr7.4:25790753-25790772 None:intergenic 35.0%
TATGGACATCATGCTTGAAA+TGG - chr7.4:25787813-25787832 MS.gene52606:intron 35.0%
TGGAGTTCCAATATGGAATA+TGG - chr7.4:25787795-25787814 MS.gene52606:intron 35.0%
TGGTACATTACAAACTAAGG+TGG - chr7.4:25790644-25790663 MS.gene52606:intron 35.0%
TTCAATCTATGCAGTCGATT+TGG + chr7.4:25789579-25789598 None:intergenic 35.0%
TTCGTGCATGTTATTCTTTC+AGG - chr7.4:25789651-25789670 MS.gene52606:intron 35.0%
TTCTGTTATGCTATGTTCGA+GGG - chr7.4:25789151-25789170 MS.gene52606:intron 35.0%
TTTCTGTTATGCTATGTTCG+AGG - chr7.4:25789150-25789169 MS.gene52606:intron 35.0%
TTTGCAGGAGTTATATGGAA+AGG - chr7.4:25788292-25788311 MS.gene52606:intron 35.0%
! AAAATCGGGTAATGGTGAAA+GGG + chr7.4:25790379-25790398 None:intergenic 35.0%
! CGAAGTTTTCACAAAGTGAA+AGG + chr7.4:25788013-25788032 None:intergenic 35.0%
! GGAAAGAAGTTTGAAACACT+TGG - chr7.4:25788540-25788559 MS.gene52606:intron 35.0%
! GGAATAGTTTGTGCAAGATA+TGG + chr7.4:25789177-25789196 None:intergenic 35.0%
! GTTGGTGTTTGAAATCTTAC+TGG + chr7.4:25789869-25789888 None:intergenic 35.0%
! TAAAATCGGGTAATGGTGAA+AGG + chr7.4:25790380-25790399 None:intergenic 35.0%
! TTCAACTTCATACACTGGTT+TGG + chr7.4:25789200-25789219 None:intergenic 35.0%
! TTCCATACCTGTCATTTCAA+AGG + chr7.4:25790251-25790270 None:intergenic 35.0%
! TTGTGTTTGAATTTCAGGTG+GGG - chr7.4:25790774-25790793 MS.gene52606:intron 35.0%
! TTTAACAACTGGCTTATTCC+AGG - chr7.4:25788656-25788675 MS.gene52606:intron 35.0%
!! GGTTAATTTGTTAAGGGGAA+GGG + chr7.4:25790533-25790552 None:intergenic 35.0%
!! TCAACTTCATACACTGGTTT+GGG + chr7.4:25789199-25789218 None:intergenic 35.0%
!! TCCGTTGATACTTAATTTGC+AGG - chr7.4:25788277-25788296 MS.gene52606:intron 35.0%
!! TGGTTAATTTGTTAAGGGGA+AGG + chr7.4:25790534-25790553 None:intergenic 35.0%
!! TTCCTTTGAAATGACAGGTA+TGG - chr7.4:25790246-25790265 MS.gene52606:CDS 35.0%
!!! CTTTTTTGGGGAAATGTTTG+TGG + chr7.4:25790554-25790573 None:intergenic 35.0%
!!! TCGTTCTTTGTTTTCCTCTA+TGG - chr7.4:25790094-25790113 MS.gene52606:intron 35.0%
!!! TTTTTAAGGTTGGTGTTGTC+TGG - chr7.4:25787969-25787988 MS.gene52606:intron 35.0%
AAAAAGATCGAGCTTAAGCC+AGG - chr7.4:25789685-25789704 MS.gene52606:intron 40.0%
AAAACTCTACTTGTCCTCTC+GGG - chr7.4:25791107-25791126 MS.gene52606:intron 40.0%
AAAAGATCGAGCTTAAGCCA+GGG - chr7.4:25789686-25789705 MS.gene52606:intron 40.0%
AAAGGTGACAGCTTGATAGA+AGG - chr7.4:25788310-25788329 MS.gene52606:intron 40.0%
AAGGGTAAATGTTAGTAGCG+GGG + chr7.4:25790515-25790534 None:intergenic 40.0%
AAGTGTTTACTCGCCAAGTT+TGG - chr7.4:25788797-25788816 MS.gene52606:intron 40.0%
ACTTGACATGCTTAGGTCAA+AGG - chr7.4:25788345-25788364 MS.gene52606:intron 40.0%
ACTTTGTGAAAACTTCGAGC+AGG - chr7.4:25788016-25788035 MS.gene52606:intron 40.0%
ATCAACACGATCCATTACAC+GGG - chr7.4:25790671-25790690 MS.gene52606:intron 40.0%
ATTACTAAGCAAACGGAGGA+AGG + chr7.4:25788606-25788625 None:intergenic 40.0%
CAAAACTCTACTTGTCCTCT+CGG - chr7.4:25791106-25791125 MS.gene52606:intron 40.0%
CATTCTTAAAAGTTGTGCCC+TGG - chr7.4:25790733-25790752 MS.gene52606:intron 40.0%
CTAAGATGAATCGTGCATCA+AGG - chr7.4:25788884-25788903 MS.gene52606:intron 40.0%
CTAAGCATGTCAAGTGTTTC+AGG + chr7.4:25788340-25788359 None:intergenic 40.0%
CTGAAACACTTGACATGCTT+AGG - chr7.4:25788338-25788357 MS.gene52606:intron 40.0%
CTGGATATCAGTATGTTGGT+GGG - chr7.4:25789298-25789317 MS.gene52606:intron 40.0%
CTTGATGCACGATTCATCTT+AGG + chr7.4:25788886-25788905 None:intergenic 40.0%
CTTGCTGGATATCAGTATGT+TGG - chr7.4:25789294-25789313 MS.gene52606:intron 40.0%
GAAGGGTAAATGTTAGTAGC+GGG + chr7.4:25790516-25790535 None:intergenic 40.0%
GAATAAACACGTATGCTGCA+TGG + chr7.4:25790040-25790059 None:intergenic 40.0%
GAATAACATGCACGAAGAAG+AGG + chr7.4:25789647-25789666 None:intergenic 40.0%
GGAAGGGTAAATGTTAGTAG+CGG + chr7.4:25790517-25790536 None:intergenic 40.0%
GGTATAGAAGTCTGGTTGTA+TGG + chr7.4:25791171-25791190 None:intergenic 40.0%
GGTTAAAAGAGCTCCAAACT+TGG + chr7.4:25788865-25788884 None:intergenic 40.0%
GTAGCAATGAAAAGACATCC+AGG + chr7.4:25790294-25790313 None:intergenic 40.0%
GTAGTCCATCATGAAAGTTG+AGG + chr7.4:25790860-25790879 None:intergenic 40.0%
GTCACAGATATGTATGGTTG+GGG - chr7.4:25791040-25791059 MS.gene52606:intron 40.0%
TGCCATTGGGTTCTTATCAA+TGG - chr7.4:25788222-25788241 MS.gene52606:intron 40.0%
! AGTTTTCAAAATGTCCGCGA+AGG - chr7.4:25790432-25790451 MS.gene52606:CDS 40.0%
! TGCTGAACTTGATGATTGCA+TGG - chr7.4:25789075-25789094 MS.gene52606:CDS 40.0%
! TGTGTTTGAATTTCAGGTGG+GGG - chr7.4:25790775-25790794 MS.gene52606:intron 40.0%
!! CAACTTCATACACTGGTTTG+GGG + chr7.4:25789198-25789217 None:intergenic 40.0%
AAGCAAACGGAGGAAGGAAA+GGG + chr7.4:25788600-25788619 None:intergenic 45.0%
ACATGCACGAAGAAGAGGAA+AGG + chr7.4:25789642-25789661 None:intergenic 45.0%
ATCTCACAGACGCTCAAGAA+TGG - chr7.4:25790334-25790353 MS.gene52606:intron 45.0%
ATGAATCGTGCATCAAGGCT+TGG - chr7.4:25788889-25788908 MS.gene52606:intron 45.0%
CCAACAACTCAACTAAGTCG+AGG - chr7.4:25788508-25788527 MS.gene52606:intron 45.0%
CTGTGTATACGTGAAAACCC+TGG - chr7.4:25790273-25790292 MS.gene52606:intron 45.0%
GCTGGATATCAGTATGTTGG+TGG - chr7.4:25789297-25789316 MS.gene52606:intron 45.0%
GGTAAGGTGGATAGAGATTC+TGG - chr7.4:25790201-25790220 MS.gene52606:CDS 45.0%
TAAGCAAACGGAGGAAGGAA+AGG + chr7.4:25788601-25788620 None:intergenic 45.0%
TAATGGTGAAAGGGAGCGAA+AGG + chr7.4:25790370-25790389 None:intergenic 45.0%
TATCGTAATGCCCCGTGTAA+TGG + chr7.4:25790685-25790704 None:intergenic 45.0%
TCAACACGATCCATTACACG+GGG - chr7.4:25790672-25790691 MS.gene52606:intron 45.0%
TCATACAGCTGCAGCCTTTA+GGG + chr7.4:25791216-25791235 None:intergenic 45.0%
TCATGCTTCAGATGGTGACT+TGG + chr7.4:25789497-25789516 None:intergenic 45.0%
TCTCACAGACGCTCAAGAAT+GGG - chr7.4:25790335-25790354 MS.gene52606:intron 45.0%
TCTGGTTGTATGGAGTTGTC+TGG + chr7.4:25791161-25791180 None:intergenic 45.0%
TGGAGAAGATGGCATCTTGA+AGG - chr7.4:25789263-25789282 MS.gene52606:intron 45.0%
TTGTGAAAACTTCGAGCAGG+TGG - chr7.4:25788019-25788038 MS.gene52606:intron 45.0%
! AACAACTGGCTTATTCCAGG+AGG - chr7.4:25788659-25788678 MS.gene52606:intron 45.0%
! AGCTCATCAGCATTCTGAAG+CGG + chr7.4:25787569-25787588 None:intergenic 45.0%
! ATATCAGTATGTTGGTGGGC+CGG - chr7.4:25789302-25789321 MS.gene52606:intron 45.0%
! CCTCGACTTAGTTGAGTTGT+TGG + chr7.4:25788511-25788530 None:intergenic 45.0%
! GAGGGTTTTCCAACAACTAG+TGG + chr7.4:25790841-25790860 None:intergenic 45.0%
! TAGGTTGGAGCAGTTGTTGT+GGG - chr7.4:25789813-25789832 MS.gene52606:intron 45.0%
!! TTAGGTTGGAGCAGTTGTTG+TGG - chr7.4:25789812-25789831 MS.gene52606:intron 45.0%
AACTTCGAGCAGGTGGCAAA+AGG - chr7.4:25788026-25788045 MS.gene52606:intron 50.0%
ACCTCTGCTCATGCTTCAGA+TGG + chr7.4:25789505-25789524 None:intergenic 50.0%
ACTTCGAGCAGGTGGCAAAA+GGG - chr7.4:25788027-25788046 MS.gene52606:intron 50.0%
ACTTGGCCTGAATGTCAACG+CGG - chr7.4:25788557-25788576 MS.gene52606:intron 50.0%
ATCGATCGTTGGACCTCCTT+CGG + chr7.4:25790492-25790511 None:intergenic 50.0%
CAACGCGAACCACTAGTTGT+TGG - chr7.4:25790829-25790848 MS.gene52606:intron 50.0%
GCTTAAGCCAGGGTTCTTGA+TGG - chr7.4:25789696-25789715 MS.gene52606:intron 50.0%
GTGTCTCAACCCATGCTACA+GGG + chr7.4:25790470-25790489 None:intergenic 50.0%
TCATGCTCCATCAAGAACCC+TGG + chr7.4:25789706-25789725 None:intergenic 50.0%
TGTCTCAACCCATGCTACAG+GGG + chr7.4:25790469-25790488 None:intergenic 50.0%
TTGAAGGAGCTTGAGCTTGC+TGG - chr7.4:25789279-25789298 MS.gene52606:intron 50.0%
TTGTCTGGACTCTGTAGCAC+CGG + chr7.4:25791146-25791165 None:intergenic 50.0%
! AATTTCAGGTGGGGGCTCTA+TGG - chr7.4:25790783-25790802 MS.gene52606:intron 50.0%
! ACCATCTGAAGCATGAGCAG+AGG - chr7.4:25789501-25789520 MS.gene52606:CDS 50.0%
! GACTAACCGCGTTGACATTC+AGG + chr7.4:25788566-25788585 None:intergenic 50.0%
! TCTATGGTTGGTGCTCTCGT+TGG - chr7.4:25790799-25790818 MS.gene52606:intron 50.0%
!! CAAGGCTTGGTCTTGAGGAA+TGG - chr7.4:25788902-25788921 MS.gene52606:intron 50.0%
!! CTTGGTCTTGAGGAATGGAG+AGG - chr7.4:25788907-25788926 MS.gene52606:intron 50.0%
!! TGCATCAAGGCTTGGTCTTG+AGG - chr7.4:25788897-25788916 MS.gene52606:intron 50.0%
AACCCATGCTACAGGGGACA+GGG + chr7.4:25790463-25790482 None:intergenic 55.0%
ACAGACGCTCAAGAATGGGC+AGG - chr7.4:25790339-25790358 MS.gene52606:intron 55.0%
ATCCCTGTCCCCTGTAGCAT+GGG - chr7.4:25790458-25790477 MS.gene52606:CDS 55.0%
CTTCGAGCAGGTGGCAAAAG+GGG - chr7.4:25788028-25788047 MS.gene52606:intron 55.0%
GGTGTCTCAACCCATGCTAC+AGG + chr7.4:25790471-25790490 None:intergenic 55.0%
TATCCCTGTCCCCTGTAGCA+TGG - chr7.4:25790457-25790476 MS.gene52606:CDS 55.0%
! AGCATGGGTTGAGACACCGA+AGG - chr7.4:25790473-25790492 MS.gene52606:intron 55.0%
! ATGGGTTGAGACACCGAAGG+AGG - chr7.4:25790476-25790495 MS.gene52606:intron 55.0%
! TAGTAGCGGGGATCGATCGT+TGG + chr7.4:25790503-25790522 None:intergenic 55.0%
CAACCCATGCTACAGGGGAC+AGG + chr7.4:25790464-25790483 None:intergenic 60.0%
GGGACAGGGATACTCCTTCG+CGG + chr7.4:25790449-25790468 None:intergenic 60.0%
TCAGGTGGGGGCTCTATGGT+TGG - chr7.4:25790787-25790806 MS.gene52606:intron 60.0%
!! ACTCTGTAGCACCGGCAGTG+TGG + chr7.4:25791138-25791157 None:intergenic 60.0%
GCAGTGTGGTGACACCCGAG+AGG + chr7.4:25791124-25791143 None:intergenic 65.0%
! CTCGGGTGTCACCACACTGC+CGG - chr7.4:25791124-25791143 MS.gene52606:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 25787542 25791235 25787542 ID=MS.gene52606
chr7.4 mRNA 25787542 25791235 25787542 ID=MS.gene52606.t1;Parent=MS.gene52606
chr7.4 exon 25791151 25791235 25791151 ID=MS.gene52606.t1.exon1;Parent=MS.gene52606.t1
chr7.4 CDS 25791151 25791235 25791151 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25790411 25790478 25790411 ID=MS.gene52606.t1.exon2;Parent=MS.gene52606.t1
chr7.4 CDS 25790411 25790478 25790411 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25790199 25790291 25790199 ID=MS.gene52606.t1.exon3;Parent=MS.gene52606.t1
chr7.4 CDS 25790199 25790291 25790199 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25790028 25790099 25790028 ID=MS.gene52606.t1.exon4;Parent=MS.gene52606.t1
chr7.4 CDS 25790028 25790099 25790028 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25789454 25789525 25789454 ID=MS.gene52606.t1.exon5;Parent=MS.gene52606.t1
chr7.4 CDS 25789454 25789525 25789454 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25789045 25789104 25789045 ID=MS.gene52606.t1.exon6;Parent=MS.gene52606.t1
chr7.4 CDS 25789045 25789104 25789045 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25788909 25788961 25788909 ID=MS.gene52606.t1.exon7;Parent=MS.gene52606.t1
chr7.4 CDS 25788909 25788961 25788909 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25788417 25788514 25788417 ID=MS.gene52606.t1.exon8;Parent=MS.gene52606.t1
chr7.4 CDS 25788417 25788514 25788417 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25787887 25787986 25787887 ID=MS.gene52606.t1.exon9;Parent=MS.gene52606.t1
chr7.4 CDS 25787887 25787986 25787887 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
chr7.4 exon 25787542 25787752 25787542 ID=MS.gene52606.t1.exon10;Parent=MS.gene52606.t1
chr7.4 CDS 25787542 25787752 25787542 ID=cds.MS.gene52606.t1;Parent=MS.gene52606.t1
Gene Sequence

>MS.gene52606

ATGGCAACAAAAGCATTGGCACAACCGCTTCAGAATGCTGATGAGCTTATTGATTCTGTTGAGACTTTTATCTTTGATTGTGACGGTATGTTATGCCTCTATTATTGAATTGGAAAAGGATAAAAATGGTGATATGAATGATGAGTTGATGATTAAGTTTTTTCTAGGACTATGAGAAAAGCGTACGTGTGAGAGTAATCTTATTAATTTTTCTTGTATAAGATGTTAATAAGTTAGTGGTTATGTTATTTTCTGGAGTTCCAATATGGAATATGGACATCATGCTTGAAATGGTTTTAGTGTCTCTTATATCATCAACTGAGTTATTTGTTTGATGAAATGTATATTCTGTTATTTTTGCTAGGATCTAAAGCATTTTCATGTAATTTTGATATTATGTGTTTATTTAAGAATCAAATTACATGTATTTTTAAGGTTGGTGTTGTCTGGAAATAAACATTCGATTTGCCTTTCACTTTGTGAAAACTTCGAGCAGGTGGCAAAAGGGGATCATGTCATATTTGACAGACATCATGTGAACTAAACTAAACTAAACTACACATTTTTTCTTTCATTAAGTTAAACAATGTCCCTCATGTATTGATTTCATTATGTTCTCTCTTAGATGTTATACTTTTGAGTTGTTAACATTTGATGCTTTCTTTTTCTTAATATGTGTATGCCATTGGGTTCTTATCAATGGATGGATATTGATGTAATGTTACTTTTCCTTTTTCCGTTGATACTTAATTTGCAGGAGTTATATGGAAAGGTGACAGCTTGATAGAAGGAGTGCCTGAAACACTTGACATGCTTAGGTCAAAGGTTTGTGTACTAATAATGTAGGAACTAGGCCTTTACTTGCAAGTGTAAAAGTTATTCAATCTGTCTATGTTCTTTTTTTAGAATTTCTTTTGAGATTTGGATCTCTTGATAAACATTAGGGAAAAAGATTGGTTTTTGTCACCAACAACTCAACTAAGTCGAGGAAACAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAACGCGGTTAGTCTGCTTTTGTTGCCCTTTCCTTCCTCCGTTTGCTTAGTAATTGTATAATCAATACTCATAGCTTCAAAATATTTAACAACTGGCTTATTCCAGGAGGAAATTTTTGCATCATCTTTTGCAGTTGCTGCGTATTTGAAATCCATTGATTTCCCAAAAGATAAAAAGGTAACATATATCATCTTTTGCTTTGGAGTATGATTGAAACAAATATTAAGTGTTTACTCGCCAAGTTTGGAGCTCTTTTAACTGATTGAAACAAATATTAAGTGTTTACTCGCCAAGTTTGGAGCTCTTTTAACCTAAGATGAATCGTGCATCAAGGCTTGGTCTTGAGGAATGGAGAGGCCCCTTCAACTAATTAGAATACTATAGGGCCCAACATGAATTATGACATGTTTATAAACCGGGAAATTAAATGATTTTAGAGCCAACCAAGTGATAAATGAAGTTAACAATATTTATTTGTAAAATTCTCGTATAGTAATTGTGATGCTGAACTTGATGATTGCATGGTTTATGTTAAGCATATACTACTGGAGAAATACTACAGAACATTATCGTTTTATTTCTGTTATGCTATGTTCGAGGGCCATATCTTGCACAAACTATTCCCCAAACCAGTGTATGAAGTTGAAGTATAGTACTGACATACGTTAGCATGATTTAGGTTTATGTCATTGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTATGTTGGTGGGCCGGTATGTATTGAGTTCGTATATGTAAAAGCTTTACTACCTGTTCTTCTGTAAGCTTTTAATTTTGATCACTTGGTAATGTGCAATACCATTTTATCATTATTTTAATCAGTTTGACTGATAAAGCATATACACCAATTTTGAATGATAATGCATGACATATAATAGTCTCACCAAGTCACCATCTGAAGCATGAGCAGAGGTGACCTAATGACAATGATGTTTTGATACATTAATTTGCAATTTGAACATTTTCCAAATCGACTGCATAGATTGAACCTCTTTTATTAGTATGGAATTATTCTCATGTTTGATTATCCTTTCCTCTTCTTCGTGCATGTTATTCTTTCAGGAAGATGGCGAGAAAAAGATCGAGCTTAAGCCAGGGTTCTTGATGGAGCATGATGAAGATGTATGTACTTCTAGCCTTTCTTGATAATTGGCAACATTTAACATTATTCCCTGTTCCTATTATAAGAGTGTGTTTATTATTAGGTTGGAGCAGTTGTTGTGGGATTTGATCGCTATTTCAACTACTATAAAGTCCAGTAAGATTTCAAACACCAACACTGAAACATGACAATTACATATGCATGCTGTACTAAATTTAGAGACAAACAACCCCGTGATTAGAAAATTAAGAAATTTCGTTGGCGTATATACTTTTTTTATAACTTTTTTTTGTATTAAAGTGTTGCAGCAAATGGATTCAGATTCCATGCAGCATACGTGTTTATTCATATTTAAACTTGTGCATGTAGGATATGTTTTATTCGTTCTTTGTTTTCCTCTATGGCCAGATCTAAATTTTATCAGCATGGAACATTTGGTGATGTAGTATGTATTTTAGCATGTAGCAAGGGTGATATTTTTAAATTCTGGTAAGGTGGATAGAGATTCTGGATGAGTTGTTAAATATCATGTTTTCCTTTGAAATGACAGGTATGGAACTCTGTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACAGAGATGCTGTTACTCATCTCACAGACGCTCAAGAATGGGCAGGTTTGTCCTTTCGCTCCCTTTCACCATTACCCGATTTTATTTCATGACATTATATGCATAATAATCGAGTGAGTTTTCAAAATGTCCGCGAAGGAGTATCCCTGTCCCCTGTAGCATGGGTTGAGACACCGAAGGAGGTCCAACGATCGATCCCCGCTACTAACATTTACCCTTCCCCTTAACAAATTAACCACAAACATTTCCCCAAAAAAGAGTTTTCAAAATTCTTTTGATCATTCTTCAATTAGAGAGTTTGATTGCATAAAAAGACTAGCGAATTAGATGGTACATTACAAACTAAGGTGGTTCAATCAACACGATCCATTACACGGGGCATTACGATAATGCAATTAGTTATTTTGCAGAGTCAATCATTCTTAAAAGTTGTGCCCTGGTAGTCGAATCTGATATATTTGTGTTTGAATTTCAGGTGGGGGCTCTATGGTTGGTGCTCTCGTTGGATCTACTCAACGCGAACCACTAGTTGTTGGAAAACCCTCAACTTTCATGATGGACTACTTAGCAAACGAGTATAATTTTCTACTGTCTTGTTATATATTCTTCATGAATGATTGTAGAGTATTTTTTGCTTTCAAACACCATTTGCAAGTTTGTTTACAGAATAATTTTCCTCTGACTGTGTTGTAATTTTATTGAACAACAGGTTTGGCATTTCAAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGACATTTTGTTTGGACAAAATGGTGGCTGCAAAACTCTACTTGTCCTCTCGGGTGTCACCACACTGCCGGTGCTACAGAGTCCAGACAACTCCATACAACCAGACTTCTATACCAACAAAATTTCAGATTTTCTTTCCCTAAAGGCTGCAGCTGTATGA

Protein sequence

>MS.gene52606.t1

MATKALAQPLQNADELIDSVETFIFDCDGVIWKGDSLIEGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNAEEIFASSFAVAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYVGGPEDGEKKIELKPGFLMEHDEDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGALVGSTQREPLVVGKPSTFMMDYLANEFGISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPVLQSPDNSIQPDFYTNKISDFLSLKAAAV