Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024584.t1 | XP_003626415.1 | 99.3 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 1.30E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024584.t1 | Q6TGY8 | 40.2 | 256 | 150 | 2 | 32 | 287 | 23 | 275 | 1.6e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024584.t1 | G7L1T5 | 99.3 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 9.3e-165 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024584 | MS.gene050515 | PPI |
| MS.gene024584 | MS.gene026045 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024584.t1 | MTR_7g114810 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024584.t1 | AT3G04830 | 77.228 | 303 | 67 | 1 | 1 | 301 | 1 | 303 | 3.07e-174 | 484 |
| MS.gene024584.t1 | AT5G28220 | 75.748 | 301 | 70 | 1 | 1 | 298 | 14 | 314 | 4.23e-170 | 474 |
| MS.gene024584.t1 | AT3G04830 | 76.568 | 303 | 65 | 2 | 1 | 301 | 1 | 299 | 8.35e-170 | 473 |
Find 68 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCACAAGGCAATATTTC+TGG | 0.195163 | 7.2:+2616776 | MS.gene024584:CDS |
| GATACCATCGGCGCCGAGTT+TGG | 0.277168 | 7.2:-2614833 | None:intergenic |
| CATAGTATTTCTTGGCAGTT+TGG | 0.300310 | 7.2:-2617401 | None:intergenic |
| AAAAGCGTACTCAAGCCTTT+TGG | 0.323791 | 7.2:+2616276 | MS.gene024584:CDS |
| ATTGAAGAATCTAGAAATTC+AGG | 0.329036 | 7.2:+2614690 | MS.gene024584:CDS |
| TGCTTGAAGCAAAAGGTTCC+TGG | 0.339375 | 7.2:+2616242 | MS.gene024584:CDS |
| GCATCCACTATTGACTTAAC+TGG | 0.339789 | 7.2:+2617423 | MS.gene024584:CDS |
| AGTGGATGCATAGTATTTCT+TGG | 0.360041 | 7.2:-2617409 | None:intergenic |
| GGCTCTTCGGAAGAGGTTCC+CGG | 0.373643 | 7.2:+2615580 | MS.gene024584:CDS |
| GTAAGTTGAGGAAGCTTGTC+AGG | 0.381715 | 7.2:-2617748 | None:intergenic |
| TTGTACAGATCATCCATAAA+AGG | 0.385579 | 7.2:+2616738 | MS.gene024584:intron |
| GCTATTGCACAACTTACAAA+AGG | 0.390284 | 7.2:+2617643 | MS.gene024584:CDS |
| GCCGAGTTTGGATCGGAGTT+TGG | 0.396111 | 7.2:-2614821 | None:intergenic |
| CGACAATGTTAAACTCTTCA+AGG | 0.399413 | 7.2:-2617776 | None:intergenic |
| GTAATCCTTCTCCAACGCTT+TGG | 0.411068 | 7.2:-2617713 | None:intergenic |
| CTAGAAATTCAGGTCGATAA+TGG | 0.415655 | 7.2:+2614700 | MS.gene024584:CDS |
| TAATGGTGGCGGAGGAGCTT+GGG | 0.434613 | 7.2:+2614717 | MS.gene024584:CDS |
| ATATTTCTGGGGCTATTGAA+TGG | 0.440932 | 7.2:+2616789 | MS.gene024584:CDS |
| AGGCACAAGGCAATATTTCT+GGG | 0.444178 | 7.2:+2616777 | MS.gene024584:CDS |
| TGCCAGGTACTTTATACGCT+TGG | 0.459506 | 7.2:+2617363 | MS.gene024584:intron |
| AGAATGGACTTTGTATGAGC+AGG | 0.460189 | 7.2:+2614968 | MS.gene024584:intron |
| AGCAAAAGGTTCCTGGGAAA+AGG | 0.464783 | 7.2:+2616249 | MS.gene024584:CDS |
| TCAATGTCTTGATGTTGCTC+AGG | 0.464948 | 7.2:+2615013 | MS.gene024584:CDS |
| CCATAAAAGGAGGGTGGCTA+TGG | 0.465139 | 7.2:+2616751 | MS.gene024584:CDS |
| ACTAATTATTACAGGAAGGC+TGG | 0.465186 | 7.2:+2616210 | MS.gene024584:intron |
| CAGGTACTTTATACGCTTGG+TGG | 0.479808 | 7.2:+2617366 | MS.gene024584:intron |
| AGGACTGCACAAAGGCTCTT+CGG | 0.483997 | 7.2:+2615567 | MS.gene024584:intron |
| GCCTCCAGTTAAGTCAATAG+TGG | 0.499666 | 7.2:-2617427 | None:intergenic |
| GCAGGTTGCAGTTGCTGCTA+TGG | 0.502649 | 7.2:+2614986 | MS.gene024584:CDS |
| ATAATGGTGGCGGAGGAGCT+TGG | 0.516076 | 7.2:+2614716 | MS.gene024584:CDS |
| CAAGAGGATTGTCCTCCAAA+AGG | 0.518847 | 7.2:-2616291 | None:intergenic |
| AGTGAGTTTACTTGATCAAG+AGG | 0.519735 | 7.2:-2616307 | None:intergenic |
| GCATATGCTAAGTGATAAAG+TGG | 0.521109 | 7.2:-2617165 | None:intergenic |
| GCACAAAGGCTCTTCGGAAG+AGG | 0.521348 | 7.2:+2615573 | MS.gene024584:CDS |
| AGCTCTCTTCGGTATATGCT+TGG | 0.521948 | 7.2:+2617461 | MS.gene024584:CDS |
| GCTTGAAGCAAAAGGTTCCT+GGG | 0.534662 | 7.2:+2616243 | MS.gene024584:CDS |
| GAGTTTGGAATCATTCAAGA+TGG | 0.538373 | 7.2:-2614806 | None:intergenic |
| AAGAATACCAGAGCTCTCTT+CGG | 0.539836 | 7.2:+2617450 | MS.gene024584:CDS |
| GCAATGTTGCTTGAAGCAAA+AGG | 0.543383 | 7.2:+2616235 | MS.gene024584:CDS |
| CGATCCAAACTCGGCGCCGA+TGG | 0.544519 | 7.2:+2614829 | MS.gene024584:CDS |
| TTCAAGGCAGTTGTAAGTTG+AGG | 0.545844 | 7.2:-2617760 | None:intergenic |
| ATCTCTAGCAGCCAAAGCGT+TGG | 0.547628 | 7.2:+2617702 | MS.gene024584:CDS |
| GCATATACCGAAGAGAGCTC+TGG | 0.553907 | 7.2:-2617457 | None:intergenic |
| AAGAACAAGGAAGATAAAGA+AGG | 0.555037 | 7.2:+2617667 | MS.gene024584:CDS |
| TCCAAACTCCGATCCAAACT+CGG | 0.556249 | 7.2:+2614820 | MS.gene024584:CDS |
| TCATGGCAGATCACGATGCA+TGG | 0.557684 | 7.2:+2616951 | MS.gene024584:CDS |
| TTCCCTCGTCAGAAAACTCA+AGG | 0.558152 | 7.2:+2614747 | MS.gene024584:CDS |
| CAGGTCGATAATGGTGGCGG+AGG | 0.567323 | 7.2:+2614709 | MS.gene024584:CDS |
| CTATTGCACAACTTACAAAA+GGG | 0.580815 | 7.2:+2617644 | MS.gene024584:CDS |
| AGCAGCCAAAGCGTTGGAGA+AGG | 0.584396 | 7.2:+2617708 | MS.gene024584:CDS |
| TCTGATAAAGTCCTCAAGCA+TGG | 0.590101 | 7.2:+2614778 | MS.gene024584:CDS |
| TACAGATCATCCATAAAAGG+AGG | 0.591043 | 7.2:+2616741 | MS.gene024584:intron |
| AAGGAGGGTGGCTATGGCAA+AGG | 0.598462 | 7.2:+2616757 | MS.gene024584:CDS |
| CATCGGCGCCGAGTTTGGAT+CGG | 0.608680 | 7.2:-2614828 | None:intergenic |
| ATTCAGGTCGATAATGGTGG+CGG | 0.610159 | 7.2:+2614706 | MS.gene024584:CDS |
| GTGGCTATGGCAAAGGCACA+AGG | 0.630715 | 7.2:+2616764 | MS.gene024584:CDS |
| AGATGGACAATCCATGCTTG+AGG | 0.636709 | 7.2:-2614789 | None:intergenic |
| TTCCCGGAGAGCAAAAGAGT+TGG | 0.639248 | 7.2:+2615596 | MS.gene024584:CDS |
| TCCACTATTGACTTAACTGG+AGG | 0.645324 | 7.2:+2617426 | MS.gene024584:CDS |
| AAGTGATAAAGTGGTACAGT+TGG | 0.646636 | 7.2:-2617156 | None:intergenic |
| GAAATTCAGGTCGATAATGG+TGG | 0.656182 | 7.2:+2614703 | MS.gene024584:CDS |
| ACAGATCATCCATAAAAGGA+GGG | 0.667416 | 7.2:+2616742 | MS.gene024584:intron |
| ACTTACAAAAGGGAAGAACA+AGG | 0.669740 | 7.2:+2617654 | MS.gene024584:CDS |
| GATCATCCATAAAAGGAGGG+TGG | 0.671561 | 7.2:+2616745 | MS.gene024584:intron |
| TGAGGACTTTATCAGAACGA+CGG | 0.672947 | 7.2:-2614771 | None:intergenic |
| AATTATTACAGGAAGGCTGG+AGG | 0.673966 | 7.2:+2616213 | MS.gene024584:intron |
| GGCACAAGGCAATATTTCTG+GGG | 0.681635 | 7.2:+2616778 | MS.gene024584:CDS |
| AAAGATGGTAACGAAAACAG+AGG | 0.716729 | 7.2:+2614660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTCATATATATT+TGG | - | chr7.2:2616913-2616932 | None:intergenic | 10.0% |
| !! | AAAAAAATTAAAATTACAAG+CGG | + | chr7.2:2615741-2615760 | MS.gene024584:intron | 10.0% |
| !!! | AAACATTATTTTAACTTAAA+TGG | + | chr7.2:2617337-2617356 | MS.gene024584:intron | 10.0% |
| !!! | TAATATTTTACTTTTTTATC+AGG | + | chr7.2:2615547-2615566 | MS.gene024584:intron | 10.0% |
| !! | ATATGTAAAACAAACTTATT+TGG | - | chr7.2:2616131-2616150 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATACTTATT+TGG | - | chr7.2:2616182-2616201 | None:intergenic | 15.0% |
| !! | CAAATAAAAAAAAAACACAA+AGG | - | chr7.2:2617078-2617097 | None:intergenic | 15.0% |
| !!! | AAGTATCTTTAATTGATTTT+TGG | + | chr7.2:2616185-2616204 | MS.gene024584:intron | 15.0% |
| !!! | AATAACCAAATTTTCTTTTT+TGG | + | chr7.2:2616707-2616726 | MS.gene024584:intron | 15.0% |
| !!! | TTATAACAATGACTAATTTT+TGG | + | chr7.2:2616413-2616432 | MS.gene024584:intron | 15.0% |
| !! | AATAAAAATCATACATTTGC+AGG | - | chr7.2:2617003-2617022 | None:intergenic | 20.0% |
| !! | ATAAAAATCATACATTTGCA+GGG | - | chr7.2:2617002-2617021 | None:intergenic | 20.0% |
| !! | TACCATATTAAATATGCAAT+CGG | - | chr7.2:2616579-2616598 | None:intergenic | 20.0% |
| !! | TATATGTGAACAATATATGA+AGG | - | chr7.2:2617581-2617600 | None:intergenic | 20.0% |
| !! | TTCACAATTAAACGAAATTT+AGG | - | chr7.2:2614867-2614886 | None:intergenic | 20.0% |
| !!! | AAGCAATATTTTCCTTTAAA+CGG | - | chr7.2:2616875-2616894 | None:intergenic | 20.0% |
| !!! | AGTTTCTTTTAGCAAATTTT+TGG | + | chr7.2:2616018-2616037 | MS.gene024584:intron | 20.0% |
| !!! | GTTTTTCTATTCATTAACTT+AGG | + | chr7.2:2615173-2615192 | MS.gene024584:intron | 20.0% |
| !!! | TTATTTGGAAATTTTCTAGT+GGG | - | chr7.2:2616167-2616186 | None:intergenic | 20.0% |
| !!! | TTGTAATTCTATGCTATTTA+GGG | + | chr7.2:2615127-2615146 | MS.gene024584:intron | 20.0% |
| !!! | TTTTGGTAACTAATTATTAC+AGG | + | chr7.2:2616202-2616221 | MS.gene024584:intron | 20.0% |
| ! | AAATTGCAATGATTAACCTT+TGG | + | chr7.2:2615850-2615869 | MS.gene024584:intron | 25.0% |
| ! | AGAATTACAAGTGAATTTCA+CGG | - | chr7.2:2615117-2615136 | None:intergenic | 25.0% |
| ! | ATTGAAGAATCTAGAAATTC+AGG | + | chr7.2:2614690-2614709 | MS.gene024584:CDS | 25.0% |
| ! | CAAAGCCAAAAAAGAAAATT+TGG | - | chr7.2:2616715-2616734 | None:intergenic | 25.0% |
| ! | CATAAGACTTATCATATAAG+TGG | + | chr7.2:2615225-2615244 | MS.gene024584:intron | 25.0% |
| ! | GAAAAACATTAAACCACAAT+TGG | - | chr7.2:2614914-2614933 | None:intergenic | 25.0% |
| ! | TAAACCTTTATACCTTTATG+TGG | + | chr7.2:2615421-2615440 | MS.gene024584:intron | 25.0% |
| ! | TAATTTCTGAATTTGGATAG+TGG | + | chr7.2:2615383-2615402 | MS.gene024584:intron | 25.0% |
| ! | TAGGTTTAAATTGATACCAT+CGG | - | chr7.2:2614848-2614867 | None:intergenic | 25.0% |
| ! | TTGAGTAATGAAACCAAAAA+GGG | + | chr7.2:2616502-2616521 | MS.gene024584:intron | 25.0% |
| ! | TTGAGTCAATATAAGCTTAA+CGG | + | chr7.2:2615715-2615734 | MS.gene024584:intron | 25.0% |
| !! | AAAACTAGAGACTTTTAATC+AGG | - | chr7.2:2615505-2615524 | None:intergenic | 25.0% |
| !! | AATGTTTTATAACTCTTGCT+AGG | - | chr7.2:2617324-2617343 | None:intergenic | 25.0% |
| !! | CTTATTTGGAAATTTTCTAG+TGG | - | chr7.2:2616168-2616187 | None:intergenic | 25.0% |
| !! | CTTGTAATTCTATGCTATTT+AGG | + | chr7.2:2615126-2615145 | MS.gene024584:intron | 25.0% |
| !! | TACCGATTGCATATTTAATA+TGG | + | chr7.2:2616574-2616593 | MS.gene024584:intron | 25.0% |
| !! | TCATTTGTAACTCAATTTTG+TGG | + | chr7.2:2615077-2615096 | MS.gene024584:intron | 25.0% |
| !! | TGTAGAAGTTTGAAATGTAA+AGG | - | chr7.2:2615898-2615917 | None:intergenic | 25.0% |
| !!! | CTTTTAGCAAATTTTTGGAT+TGG | + | chr7.2:2616023-2616042 | MS.gene024584:intron | 25.0% |
| !!! | GTCTCTAGTTTTAGAATTTA+TGG | + | chr7.2:2615513-2615532 | MS.gene024584:intron | 25.0% |
| !!! | GTTTTTTTGTTGATTCAGAA+TGG | + | chr7.2:2614952-2614971 | MS.gene024584:intron | 25.0% |
| !!! | TTTTTATTTGTCTTCCTGTT+AGG | + | chr7.2:2617088-2617107 | MS.gene024584:intron | 25.0% |
| AACTCACTTAACCTTACTAT+CGG | + | chr7.2:2616322-2616341 | MS.gene024584:intron | 30.0% | |
| AAGAACAAGGAAGATAAAGA+AGG | + | chr7.2:2617667-2617686 | MS.gene024584:CDS | 30.0% | |
| AAGTATCTACTCTATGAGTT+AGG | + | chr7.2:2617194-2617213 | MS.gene024584:intron | 30.0% | |
| AGAACTGGACATAAATAATC+AGG | - | chr7.2:2615998-2616017 | None:intergenic | 30.0% | |
| AGGCAACATAAAAAACATGA+TGG | - | chr7.2:2615448-2615467 | None:intergenic | 30.0% | |
| ATGATTTCCATTCTTTCAAG+AGG | + | chr7.2:2616062-2616081 | MS.gene024584:intron | 30.0% | |
| ATTTGAATATAGTCCTGCTT+TGG | + | chr7.2:2617536-2617555 | MS.gene024584:intron | 30.0% | |
| CATTACACTTTGAGTATACT+TGG | - | chr7.2:2615937-2615956 | None:intergenic | 30.0% | |
| CTATTGCACAACTTACAAAA+GGG | + | chr7.2:2617644-2617663 | MS.gene024584:CDS | 30.0% | |
| GAACTGGACATAAATAATCA+GGG | - | chr7.2:2615997-2616016 | None:intergenic | 30.0% | |
| GCAACAGAAATAAATCACTA+CGG | - | chr7.2:2617041-2617060 | None:intergenic | 30.0% | |
| GCTCTTGTAATTTCTGAATT+TGG | + | chr7.2:2615376-2615395 | MS.gene024584:intron | 30.0% | |
| GGTAACTAATTATTACAGGA+AGG | + | chr7.2:2616206-2616225 | MS.gene024584:intron | 30.0% | |
| GTTGAGTAATGAAACCAAAA+AGG | + | chr7.2:2616501-2616520 | MS.gene024584:intron | 30.0% | |
| TGAAATTGAAGACCGTTTAA+AGG | + | chr7.2:2616860-2616879 | MS.gene024584:intron | 30.0% | |
| TGATTTCCATTCTTTCAAGA+GGG | + | chr7.2:2616063-2616082 | MS.gene024584:intron | 30.0% | |
| TTGCTAAAAGAAACTAGAAC+TGG | - | chr7.2:2616013-2616032 | None:intergenic | 30.0% | |
| TTGTACAGATCATCCATAAA+AGG | + | chr7.2:2616738-2616757 | MS.gene024584:intron | 30.0% | |
| ! | AGCAAATGTAACTGTTGTTT+AGG | + | chr7.2:2615813-2615832 | MS.gene024584:intron | 30.0% |
| ! | CACTTGACTCTTTTATGATA+TGG | + | chr7.2:2615297-2615316 | MS.gene024584:intron | 30.0% |
| ! | TTTTTATGTTGCCTGAATTG+AGG | + | chr7.2:2615454-2615473 | MS.gene024584:intron | 30.0% |
| !! | TCTTACTTTGCATTTTCAAG+AGG | + | chr7.2:2616600-2616619 | MS.gene024584:intron | 30.0% |
| !! | TTAGCAAATTTTTGGATTGG+TGG | + | chr7.2:2616026-2616045 | MS.gene024584:intron | 30.0% |
| !!! | TAGCAAATTTTTGGATTGGT+GGG | + | chr7.2:2616027-2616046 | MS.gene024584:intron | 30.0% |
| AAACGGTCTTCAATTTCAGA+TGG | - | chr7.2:2616858-2616877 | None:intergenic | 35.0% | |
| AACGGTCTTCAATTTCAGAT+GGG | - | chr7.2:2616857-2616876 | None:intergenic | 35.0% | |
| AAGATTTACGCTTCATCACA+GGG | - | chr7.2:2616395-2616414 | None:intergenic | 35.0% | |
| AAGTCAACTACTTCCAATTG+TGG | + | chr7.2:2614898-2614917 | MS.gene024584:intron | 35.0% | |
| AAGTGATAAAGTGGTACAGT+TGG | - | chr7.2:2617159-2617178 | None:intergenic | 35.0% | |
| AATCACTACGGAAAGAGAAA+CGG | - | chr7.2:2617029-2617048 | None:intergenic | 35.0% | |
| ACAGATCATCCATAAAAGGA+GGG | + | chr7.2:2616742-2616761 | MS.gene024584:intron | 35.0% | |
| ACTAATTATTACAGGAAGGC+TGG | + | chr7.2:2616210-2616229 | MS.gene024584:intron | 35.0% | |
| ACTCACTTAACCTTACTATC+GGG | + | chr7.2:2616323-2616342 | MS.gene024584:intron | 35.0% | |
| ACTTACAAAAGGGAAGAACA+AGG | + | chr7.2:2617654-2617673 | MS.gene024584:CDS | 35.0% | |
| AGTGAGTTTACTTGATCAAG+AGG | - | chr7.2:2616310-2616329 | None:intergenic | 35.0% | |
| AGTGGATGCATAGTATTTCT+TGG | - | chr7.2:2617412-2617431 | None:intergenic | 35.0% | |
| ATGTAGCAAATCCTCAATTC+AGG | - | chr7.2:2615468-2615487 | None:intergenic | 35.0% | |
| ATTGTTACTCAAGAAAGCCT+AGG | - | chr7.2:2616690-2616709 | None:intergenic | 35.0% | |
| CAGAATCGTGAACTTGTAAA+TGG | - | chr7.2:2617514-2617533 | None:intergenic | 35.0% | |
| CATAGTATTTCTTGGCAGTT+TGG | - | chr7.2:2617404-2617423 | None:intergenic | 35.0% | |
| CGACAATGTTAAACTCTTCA+AGG | - | chr7.2:2617779-2617798 | None:intergenic | 35.0% | |
| CTAGAAATTCAGGTCGATAA+TGG | + | chr7.2:2614700-2614719 | MS.gene024584:CDS | 35.0% | |
| CTTTAACCTTCTAATAGTCC+AGG | + | chr7.2:2616475-2616494 | MS.gene024584:intron | 35.0% | |
| GCATATGCTAAGTGATAAAG+TGG | - | chr7.2:2617168-2617187 | None:intergenic | 35.0% | |
| GCTATTGCACAACTTACAAA+AGG | + | chr7.2:2617643-2617662 | MS.gene024584:CDS | 35.0% | |
| GGACATAAATAATCAGGGAA+CGG | - | chr7.2:2615992-2616011 | None:intergenic | 35.0% | |
| GTTATTAGAGTGAAGAAACC+CGG | - | chr7.2:2617259-2617278 | None:intergenic | 35.0% | |
| TAAGATTTACGCTTCATCAC+AGG | - | chr7.2:2616396-2616415 | None:intergenic | 35.0% | |
| TACAGATCATCCATAAAAGG+AGG | + | chr7.2:2616741-2616760 | MS.gene024584:intron | 35.0% | |
| TAGTGAGGCTCTATAGTATT+AGG | - | chr7.2:2616531-2616550 | None:intergenic | 35.0% | |
| TCATTAACTTAGGCTCTGTT+TGG | + | chr7.2:2615183-2615202 | MS.gene024584:intron | 35.0% | |
| TGATATCTACTAACCAAAGC+AGG | - | chr7.2:2617552-2617571 | None:intergenic | 35.0% | |
| TTATTAGAGTGAAGAAACCC+GGG | - | chr7.2:2617258-2617277 | None:intergenic | 35.0% | |
| ! | AGACTTTTAATCAGGCATGA+AGG | - | chr7.2:2615497-2615516 | None:intergenic | 35.0% |
| ! | GAGTTTGGAATCATTCAAGA+TGG | - | chr7.2:2614809-2614828 | None:intergenic | 35.0% |
| ! | TCCTCATTTTCACAGATTCA+TGG | + | chr7.2:2616934-2616953 | MS.gene024584:intron | 35.0% |
| ! | TGGACCACATAAAGGTATAA+AGG | - | chr7.2:2615428-2615447 | None:intergenic | 35.0% |
| ! | TTTTTATCAGGACTGCACAA+AGG | + | chr7.2:2615559-2615578 | MS.gene024584:intron | 35.0% |
| !! | AAACATGATGGACCACATAA+AGG | - | chr7.2:2615436-2615455 | None:intergenic | 35.0% |
| !! | AACCTTTGGCATCTTTGTTT+TGG | + | chr7.2:2615864-2615883 | MS.gene024584:intron | 35.0% |
| !! | ATATTTCTGGGGCTATTGAA+TGG | + | chr7.2:2616789-2616808 | MS.gene024584:CDS | 35.0% |
| !! | TACTTTGCATTTTCAAGAGG+CGG | + | chr7.2:2616603-2616622 | MS.gene024584:intron | 35.0% |
| !! | TAGTATTAGGTTGCCCTTTT+TGG | - | chr7.2:2616518-2616537 | None:intergenic | 35.0% |
| !! | TGGTGAGTGTTTATTTTCTG+TGG | + | chr7.2:2617481-2617500 | MS.gene024584:intron | 35.0% |
| !! | TTAACTTAAATGGTGTTGCC+AGG | + | chr7.2:2617347-2617366 | MS.gene024584:intron | 35.0% |
| !!! | ACCTTTGGCATCTTTGTTTT+GGG | + | chr7.2:2615865-2615884 | MS.gene024584:intron | 35.0% |
| AACCAGTACCATCTAACACA+TGG | - | chr7.2:2615337-2615356 | None:intergenic | 40.0% | |
| AAGAATACCAGAGCTCTCTT+CGG | + | chr7.2:2617450-2617469 | MS.gene024584:CDS | 40.0% | |
| AAGCATCCCTCTTGAAAGAA+TGG | - | chr7.2:2616072-2616091 | None:intergenic | 40.0% | |
| AAGGCACAAGGCAATATTTC+TGG | + | chr7.2:2616776-2616795 | MS.gene024584:CDS | 40.0% | |
| AATTATTACAGGAAGGCTGG+AGG | + | chr7.2:2616213-2616232 | MS.gene024584:intron | 40.0% | |
| ACCCAAAACAAAGATGCCAA+AGG | - | chr7.2:2615869-2615888 | None:intergenic | 40.0% | |
| ACTATAGAGCCTCACTATAG+TGG | + | chr7.2:2616534-2616553 | MS.gene024584:intron | 40.0% | |
| AGACAGCTGTTACATTTGCA+GGG | - | chr7.2:2615789-2615808 | None:intergenic | 40.0% | |
| AGCAACTTAAATCCACAGCA+CGG | - | chr7.2:2615653-2615672 | None:intergenic | 40.0% | |
| AGGCACAAGGCAATATTTCT+GGG | + | chr7.2:2616777-2616796 | MS.gene024584:CDS | 40.0% | |
| AGGTAAACCCATACATCTCT+AGG | - | chr7.2:2617304-2617323 | None:intergenic | 40.0% | |
| ATCCATGTGTTAGATGGTAC+TGG | + | chr7.2:2615332-2615351 | MS.gene024584:intron | 40.0% | |
| ATTGCGTCCTAGAGATGTAT+GGG | + | chr7.2:2617294-2617313 | MS.gene024584:intron | 40.0% | |
| CTATAGAGCCTCACTATAGT+GGG | + | chr7.2:2616535-2616554 | MS.gene024584:intron | 40.0% | |
| CTCACTTAACCTTACTATCG+GGG | + | chr7.2:2616324-2616343 | MS.gene024584:intron | 40.0% | |
| GCCATGAATCTGTGAAAATG+AGG | - | chr7.2:2616938-2616957 | None:intergenic | 40.0% | |
| GCTGCTTGTTTATACCTAAC+AGG | - | chr7.2:2617105-2617124 | None:intergenic | 40.0% | |
| TAGACAGCTGTTACATTTGC+AGG | - | chr7.2:2615790-2615809 | None:intergenic | 40.0% | |
| TAGGGAATCTTATGCATAGC+TGG | + | chr7.2:2615145-2615164 | MS.gene024584:intron | 40.0% | |
| TATTGCGTCCTAGAGATGTA+TGG | + | chr7.2:2617293-2617312 | MS.gene024584:intron | 40.0% | |
| TCAATGTCTTGATGTTGCTC+AGG | + | chr7.2:2615013-2615032 | MS.gene024584:CDS | 40.0% | |
| TCTGATAAAGTCCTCAAGCA+TGG | + | chr7.2:2614778-2614797 | MS.gene024584:CDS | 40.0% | |
| TGAGAGATCCATGTGTTAGA+TGG | + | chr7.2:2615326-2615345 | MS.gene024584:intron | 40.0% | |
| TGAGGACTTTATCAGAACGA+CGG | - | chr7.2:2614774-2614793 | None:intergenic | 40.0% | |
| TGCAAATGTAACAGCTGTCT+AGG | + | chr7.2:2615789-2615808 | MS.gene024584:intron | 40.0% | |
| TTCAAGGCAGTTGTAAGTTG+AGG | - | chr7.2:2617763-2617782 | None:intergenic | 40.0% | |
| ! | AGAATGGACTTTGTATGAGC+AGG | + | chr7.2:2614968-2614987 | MS.gene024584:intron | 40.0% |
| ! | CCTCACTATAGTGGGATTTA+GGG | + | chr7.2:2616543-2616562 | MS.gene024584:intron | 40.0% |
| ! | CTCACTATAGTGGGATTTAG+GGG | + | chr7.2:2616544-2616563 | MS.gene024584:intron | 40.0% |
| ! | GAAATTCAGGTCGATAATGG+TGG | + | chr7.2:2614703-2614722 | MS.gene024584:CDS | 40.0% |
| ! | GCAATGTTGCTTGAAGCAAA+AGG | + | chr7.2:2616235-2616254 | MS.gene024584:CDS | 40.0% |
| ! | TTACCAACTCTTTTGCTCTC+CGG | - | chr7.2:2615602-2615621 | None:intergenic | 40.0% |
| !! | AAAAGCGTACTCAAGCCTTT+TGG | + | chr7.2:2616276-2616295 | MS.gene024584:CDS | 40.0% |
| !! | AGTAGCAACTGTTAGGTTGA+TGG | - | chr7.2:2615689-2615708 | None:intergenic | 40.0% |
| !! | CATCTCTAGGACGCAATATT+CGG | - | chr7.2:2617291-2617310 | None:intergenic | 40.0% |
| !! | GCATCCACTATTGACTTAAC+TGG | + | chr7.2:2617423-2617442 | MS.gene024584:CDS | 40.0% |
| !! | TCCACTATTGACTTAACTGG+AGG | + | chr7.2:2617426-2617445 | MS.gene024584:CDS | 40.0% |
| AACCAGCCTGGACTATTAGA+AGG | - | chr7.2:2616484-2616503 | None:intergenic | 45.0% | |
| AACCTTCTAATAGTCCAGGC+TGG | + | chr7.2:2616479-2616498 | MS.gene024584:intron | 45.0% | |
| ACCTTACTATCGGGGAACAA+AGG | + | chr7.2:2616332-2616351 | MS.gene024584:intron | 45.0% | |
| AGAGTCAAGTGACAAGAGAC+AGG | - | chr7.2:2615288-2615307 | None:intergenic | 45.0% | |
| AGATGGACAATCCATGCTTG+AGG | - | chr7.2:2614792-2614811 | None:intergenic | 45.0% | |
| AGCAAAAGGTTCCTGGGAAA+AGG | + | chr7.2:2616249-2616268 | MS.gene024584:CDS | 45.0% | |
| AGCAGACAGTAGCAACTGTT+AGG | - | chr7.2:2615696-2615715 | None:intergenic | 45.0% | |
| AGCTCTCTTCGGTATATGCT+TGG | + | chr7.2:2617461-2617480 | MS.gene024584:CDS | 45.0% | |
| CAAGAGGATTGTCCTCCAAA+AGG | - | chr7.2:2616294-2616313 | None:intergenic | 45.0% | |
| CAGGTACTTTATACGCTTGG+TGG | + | chr7.2:2617366-2617385 | MS.gene024584:intron | 45.0% | |
| CCCTAAATCCCACTATAGTG+AGG | - | chr7.2:2616546-2616565 | None:intergenic | 45.0% | |
| CCTTACTATCGGGGAACAAA+GGG | + | chr7.2:2616333-2616352 | MS.gene024584:intron | 45.0% | |
| CTTACTATCGGGGAACAAAG+GGG | + | chr7.2:2616334-2616353 | MS.gene024584:intron | 45.0% | |
| GAGTCAAGTGACAAGAGACA+GGG | - | chr7.2:2615287-2615306 | None:intergenic | 45.0% | |
| GATCATCCATAAAAGGAGGG+TGG | + | chr7.2:2616745-2616764 | MS.gene024584:intron | 45.0% | |
| GCCTCCAGTTAAGTCAATAG+TGG | - | chr7.2:2617430-2617449 | None:intergenic | 45.0% | |
| GCTTGAAGCAAAAGGTTCCT+GGG | + | chr7.2:2616243-2616262 | MS.gene024584:CDS | 45.0% | |
| GTAATCCTTCTCCAACGCTT+TGG | - | chr7.2:2617716-2617735 | None:intergenic | 45.0% | |
| GTTTCATTACTCAACCAGCC+TGG | - | chr7.2:2616496-2616515 | None:intergenic | 45.0% | |
| TCCAAACTCCGATCCAAACT+CGG | + | chr7.2:2614820-2614839 | MS.gene024584:CDS | 45.0% | |
| TGCCAGGTACTTTATACGCT+TGG | + | chr7.2:2617363-2617382 | MS.gene024584:intron | 45.0% | |
| TGCTTGAAGCAAAAGGTTCC+TGG | + | chr7.2:2616242-2616261 | MS.gene024584:CDS | 45.0% | |
| TTACTATCGGGGAACAAAGG+GGG | + | chr7.2:2616335-2616354 | MS.gene024584:intron | 45.0% | |
| TTCCCTCGTCAGAAAACTCA+AGG | + | chr7.2:2614747-2614766 | MS.gene024584:CDS | 45.0% | |
| ! | ACAAGCAGCATTTTGCTACG+AGG | + | chr7.2:2617116-2617135 | MS.gene024584:CDS | 45.0% |
| ! | ACTATAGTGGGATTTAGGGG+AGG | + | chr7.2:2616547-2616566 | MS.gene024584:intron | 45.0% |
| ! | ATTCAGGTCGATAATGGTGG+CGG | + | chr7.2:2614706-2614725 | MS.gene024584:CDS | 45.0% |
| ! | CACCAAGCGTATAAAGTACC+TGG | - | chr7.2:2617368-2617387 | None:intergenic | 45.0% |
| ! | CTATAGTGGGATTTAGGGGA+GGG | + | chr7.2:2616548-2616567 | MS.gene024584:intron | 45.0% |
| ! | GACCTTGAGTTTTCTGACGA+GGG | - | chr7.2:2614752-2614771 | None:intergenic | 45.0% |
| ! | GCCTCACTATAGTGGGATTT+AGG | + | chr7.2:2616542-2616561 | MS.gene024584:intron | 45.0% |
| ! | GGCACAAGGCAATATTTCTG+GGG | + | chr7.2:2616778-2616797 | MS.gene024584:CDS | 45.0% |
| ! | GTAAGTTGAGGAAGCTTGTC+AGG | - | chr7.2:2617751-2617770 | None:intergenic | 45.0% |
| ! | GTGTGCAGTTGCTTGTGTTT+TGG | - | chr7.2:2615970-2615989 | None:intergenic | 45.0% |
| ! | TACCAACTCTTTTGCTCTCC+GGG | - | chr7.2:2615601-2615620 | None:intergenic | 45.0% |
| ACCTGTTATCTCCCGTCACA+CGG | + | chr7.2:2616644-2616663 | MS.gene024584:intron | 50.0% | |
| AGGACTGCACAAAGGCTCTT+CGG | + | chr7.2:2615567-2615586 | MS.gene024584:intron | 50.0% | |
| ATCTCTAGCAGCCAAAGCGT+TGG | + | chr7.2:2617702-2617721 | MS.gene024584:CDS | 50.0% | |
| CCATAAAAGGAGGGTGGCTA+TGG | + | chr7.2:2616751-2616770 | MS.gene024584:CDS | 50.0% | |
| CCCTTTGTTCCCCGATAGTA+AGG | - | chr7.2:2616336-2616355 | None:intergenic | 50.0% | |
| GAGACAGGGAAGAGTCTGTT+TGG | - | chr7.2:2615273-2615292 | None:intergenic | 50.0% | |
| GCATATACCGAAGAGAGCTC+TGG | - | chr7.2:2617460-2617479 | None:intergenic | 50.0% | |
| TACTATCGGGGAACAAAGGG+GGG | + | chr7.2:2616336-2616355 | MS.gene024584:intron | 50.0% | |
| TCAAATTCTTCCCCGTCTCC+CGG | + | chr7.2:2617237-2617256 | MS.gene024584:intron | 50.0% | |
| TCATGGCAGATCACGATGCA+TGG | + | chr7.2:2616951-2616970 | MS.gene024584:CDS | 50.0% | |
| TCTACGTCTTTACCGTGCTG+TGG | + | chr7.2:2615638-2615657 | MS.gene024584:intron | 50.0% | |
| TTCCCGGAGAGCAAAAGAGT+TGG | + | chr7.2:2615596-2615615 | MS.gene024584:CDS | 50.0% | |
| TTGGAGTTGCTTCCGTGTGA+CGG | - | chr7.2:2616659-2616678 | None:intergenic | 50.0% | |
| ! | AGCGTACTCAAGCCTTTTGG+AGG | + | chr7.2:2616279-2616298 | MS.gene024584:CDS | 50.0% |
| ! | CCATAGCCACCCTCCTTTTA+TGG | - | chr7.2:2616754-2616773 | None:intergenic | 50.0% |
| ! | GCAGGGCTCTATCTAAGATC+AGG | - | chr7.2:2615772-2615791 | None:intergenic | 50.0% |
| ! | GGACCTTGAGTTTTCTGACG+AGG | - | chr7.2:2614753-2614772 | None:intergenic | 50.0% |
| ! | GTGCAATAGCAGAAGTGCAC+TGG | - | chr7.2:2617633-2617652 | None:intergenic | 50.0% |
| !!! | CGCTTTTTCTGCCTTTTCCC+AGG | - | chr7.2:2616263-2616282 | None:intergenic | 50.0% |
| AAGGAGGGTGGCTATGGCAA+AGG | + | chr7.2:2616757-2616776 | MS.gene024584:CDS | 55.0% | |
| ACTATCGGGGAACAAAGGGG+GGG | + | chr7.2:2616337-2616356 | MS.gene024584:intron | 55.0% | |
| AGTGAAGAAACCCGGGAGAC+GGG | - | chr7.2:2617251-2617270 | None:intergenic | 55.0% | |
| CAAATTCTTCCCCGTCTCCC+GGG | + | chr7.2:2617238-2617257 | MS.gene024584:intron | 55.0% | |
| CAACTCCAACTGTTGCGCCT+AGG | + | chr7.2:2616670-2616689 | MS.gene024584:intron | 55.0% | |
| GAAAGCCTAGGCGCAACAGT+TGG | - | chr7.2:2616678-2616697 | None:intergenic | 55.0% | |
| GAGTGAAGAAACCCGGGAGA+CGG | - | chr7.2:2617252-2617271 | None:intergenic | 55.0% | |
| GCACAAAGGCTCTTCGGAAG+AGG | + | chr7.2:2615573-2615592 | MS.gene024584:CDS | 55.0% | |
| GCAGGTTGCAGTTGCTGCTA+TGG | + | chr7.2:2614986-2615005 | MS.gene024584:CDS | 55.0% | |
| GCCGAGTTTGGATCGGAGTT+TGG | - | chr7.2:2614824-2614843 | None:intergenic | 55.0% | |
| TGGAGTTGCTTCCGTGTGAC+GGG | - | chr7.2:2616658-2616677 | None:intergenic | 55.0% | |
| ! | GTGGCTATGGCAAAGGCACA+AGG | + | chr7.2:2616764-2616783 | MS.gene024584:CDS | 55.0% |
| ! | TCCGTGTGACGGGAGATAAC+AGG | - | chr7.2:2616648-2616667 | None:intergenic | 55.0% |
| !! | AGCAGCCAAAGCGTTGGAGA+AGG | + | chr7.2:2617708-2617727 | MS.gene024584:CDS | 55.0% |
| !! | ATAATGGTGGCGGAGGAGCT+TGG | + | chr7.2:2614716-2614735 | MS.gene024584:CDS | 55.0% |
| !! | TAATGGTGGCGGAGGAGCTT+GGG | + | chr7.2:2614717-2614736 | MS.gene024584:CDS | 55.0% |
| CTATCGGGGAACAAAGGGGG+GGG | + | chr7.2:2616338-2616357 | MS.gene024584:intron | 60.0% | |
| GGCTCTTCGGAAGAGGTTCC+CGG | + | chr7.2:2615580-2615599 | MS.gene024584:CDS | 60.0% | |
| GTGAAGAAACCCGGGAGACG+GGG | - | chr7.2:2617250-2617269 | None:intergenic | 60.0% | |
| TATCGGGGAACAAAGGGGGG+GGG | + | chr7.2:2616339-2616358 | MS.gene024584:intron | 60.0% | |
| ! | CATCGGCGCCGAGTTTGGAT+CGG | - | chr7.2:2614831-2614850 | None:intergenic | 60.0% |
| ! | GATACCATCGGCGCCGAGTT+TGG | - | chr7.2:2614836-2614855 | None:intergenic | 60.0% |
| !! | CAGGTCGATAATGGTGGCGG+AGG | + | chr7.2:2614709-2614728 | MS.gene024584:CDS | 60.0% |
| ATCGGGGAACAAAGGGGGGG+GGG | + | chr7.2:2616340-2616359 | MS.gene024584:intron | 65.0% | |
| ! | CGATCCAAACTCGGCGCCGA+TGG | + | chr7.2:2614829-2614848 | MS.gene024584:CDS | 65.0% |
| TCGGGGAACAAAGGGGGGGG+GGG | + | chr7.2:2616341-2616360 | MS.gene024584:intron | 70.0% | |
| AACAAAGGGGGGGGGGGGGG+GGG | + | chr7.2:2616347-2616366 | MS.gene024584:intron | 75.0% | |
| CGGGGAACAAAGGGGGGGGG+GGG | + | chr7.2:2616342-2616361 | MS.gene024584:intron | 75.0% | |
| GAACAAAGGGGGGGGGGGGG+GGG | + | chr7.2:2616346-2616365 | MS.gene024584:intron | 75.0% | |
| GGAACAAAGGGGGGGGGGGG+GGG | + | chr7.2:2616345-2616364 | MS.gene024584:intron | 75.0% | |
| GGGAACAAAGGGGGGGGGGG+GGG | + | chr7.2:2616344-2616363 | MS.gene024584:intron | 75.0% | |
| GGGGAACAAAGGGGGGGGGG+GGG | + | chr7.2:2616343-2616362 | MS.gene024584:intron | 75.0% | |
| ! | ACAAAGGGGGGGGGGGGGGG+GGG | + | chr7.2:2616348-2616367 | MS.gene024584:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 2614664 | 2617804 | 2614664 | ID=MS.gene024584 |
| chr7.2 | mRNA | 2614664 | 2617804 | 2614664 | ID=MS.gene024584.t1;Parent=MS.gene024584 |
| chr7.2 | exon | 2614664 | 2614850 | 2614664 | ID=MS.gene024584.t1.exon1;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2614664 | 2614850 | 2614664 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2614970 | 2615034 | 2614970 | ID=MS.gene024584.t1.exon2;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2614970 | 2615034 | 2614970 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2615569 | 2615617 | 2615569 | ID=MS.gene024584.t1.exon3;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2615569 | 2615617 | 2615569 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2616224 | 2616318 | 2616224 | ID=MS.gene024584.t1.exon4;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2616224 | 2616318 | 2616224 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2616746 | 2616831 | 2616746 | ID=MS.gene024584.t1.exon5;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2616746 | 2616831 | 2616746 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2616949 | 2617008 | 2616949 | ID=MS.gene024584.t1.exon6;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2616949 | 2617008 | 2616949 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2617110 | 2617191 | 2617110 | ID=MS.gene024584.t1.exon7;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2617110 | 2617191 | 2617110 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2617369 | 2617482 | 2617369 | ID=MS.gene024584.t1.exon8;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2617369 | 2617482 | 2617369 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| chr7.2 | exon | 2617634 | 2617804 | 2617634 | ID=MS.gene024584.t1.exon9;Parent=MS.gene024584.t1 |
| chr7.2 | CDS | 2617634 | 2617804 | 2617634 | ID=cds.MS.gene024584.t1;Parent=MS.gene024584.t1 |
| Gene Sequence |
| Protein sequence |
