Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026045.t1 | XP_003626415.1 | 99.3 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 1.30E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026045.t1 | Q6TGY8 | 40.2 | 256 | 150 | 2 | 32 | 287 | 23 | 275 | 1.6e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026045.t1 | G7L1T5 | 99.3 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 9.3e-165 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024584 | MS.gene026045 | PPI |
| MS.gene050515 | MS.gene026045 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026045.t1 | MTR_7g114810 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026045.t1 | AT3G04830 | 77.228 | 303 | 67 | 1 | 1 | 301 | 1 | 303 | 3.07e-174 | 484 |
| MS.gene026045.t1 | AT5G28220 | 75.748 | 301 | 70 | 1 | 1 | 298 | 14 | 314 | 4.23e-170 | 474 |
| MS.gene026045.t1 | AT3G04830 | 76.568 | 303 | 65 | 2 | 1 | 301 | 1 | 299 | 8.35e-170 | 473 |
Find 68 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCACAAGGCAATATTTC+TGG | 0.195163 | 7.3:-2370770 | MS.gene026045:CDS |
| GATACCATCGGCGCCGAGTT+TGG | 0.277168 | 7.3:+2372717 | None:intergenic |
| CATAGTATTTCTTGGCAGTT+TGG | 0.300310 | 7.3:+2370144 | None:intergenic |
| AAAAGCGTACTCAAGCCTTT+TGG | 0.323791 | 7.3:-2371267 | MS.gene026045:CDS |
| ATTGAAGAATCTAGAAATTC+AGG | 0.329036 | 7.3:-2372860 | MS.gene026045:CDS |
| TGCTTGAAGCAAAAGGTTCC+TGG | 0.339375 | 7.3:-2371301 | MS.gene026045:CDS |
| GCATCCACTATTGACTTAAC+TGG | 0.339789 | 7.3:-2370122 | MS.gene026045:CDS |
| AGTGGATGCATAGTATTTCT+TGG | 0.360041 | 7.3:+2370136 | None:intergenic |
| GGCTCTTCGGAAGAGGTTCC+CGG | 0.373643 | 7.3:-2371962 | MS.gene026045:CDS |
| GTAAGTTGAGGAAGCTTGTC+AGG | 0.381715 | 7.3:+2369797 | None:intergenic |
| TTGTACAGATCATCCATAAA+AGG | 0.385579 | 7.3:-2370808 | MS.gene026045:intron |
| GCTATTGCACAACTTACAAA+AGG | 0.390284 | 7.3:-2369902 | MS.gene026045:CDS |
| GCCGAGTTTGGATCGGAGTT+TGG | 0.396111 | 7.3:+2372729 | None:intergenic |
| CGACAATGTTAAACTCTTCA+AGG | 0.399413 | 7.3:+2369769 | None:intergenic |
| GTAATCCTTCTCCAACGCTT+TGG | 0.411068 | 7.3:+2369832 | None:intergenic |
| CTAGAAATTCAGGTCGATAA+TGG | 0.415655 | 7.3:-2372850 | MS.gene026045:CDS |
| TAATGGTGGCGGAGGAGCTT+GGG | 0.434613 | 7.3:-2372833 | MS.gene026045:CDS |
| ATATTTCTGGGGCTATTGAA+TGG | 0.440932 | 7.3:-2370757 | MS.gene026045:CDS |
| AGGCACAAGGCAATATTTCT+GGG | 0.444178 | 7.3:-2370769 | MS.gene026045:CDS |
| TGCCAGGTACTTTATACGCT+TGG | 0.459506 | 7.3:-2370182 | MS.gene026045:intron |
| AGAATGGACTTTGTATGAGC+AGG | 0.460189 | 7.3:-2372582 | MS.gene026045:CDS |
| AGCAAAAGGTTCCTGGGAAA+AGG | 0.464783 | 7.3:-2371294 | MS.gene026045:CDS |
| TCAATGTCTTGATGTTGCTC+AGG | 0.464948 | 7.3:-2372537 | MS.gene026045:intron |
| CCATAAAAGGAGGGTGGCTA+TGG | 0.465139 | 7.3:-2370795 | MS.gene026045:CDS |
| ACTAATTATTACAGGAAGGC+TGG | 0.465186 | 7.3:-2371333 | MS.gene026045:intron |
| CAGGTACTTTATACGCTTGG+TGG | 0.479808 | 7.3:-2370179 | MS.gene026045:CDS |
| AGGACTGCACAAAGGCTCTT+CGG | 0.483997 | 7.3:-2371975 | MS.gene026045:CDS |
| GCCTCCAGTTAAGTCAATAG+TGG | 0.499666 | 7.3:+2370118 | None:intergenic |
| GCAGGTTGCAGTTGCTGCTA+TGG | 0.502649 | 7.3:-2372564 | MS.gene026045:CDS |
| ATAATGGTGGCGGAGGAGCT+TGG | 0.516076 | 7.3:-2372834 | MS.gene026045:CDS |
| CAAGAGGATTGTCCTCCAAA+AGG | 0.518847 | 7.3:+2371252 | None:intergenic |
| AGTGAGTTTACTTGATCAAG+AGG | 0.519735 | 7.3:+2371236 | None:intergenic |
| GCATATGCTAAGTGATAAAG+TGG | 0.521109 | 7.3:+2370381 | None:intergenic |
| GCACAAAGGCTCTTCGGAAG+AGG | 0.521348 | 7.3:-2371969 | MS.gene026045:CDS |
| AGCTCTCTTCGGTATATGCT+TGG | 0.521948 | 7.3:-2370084 | MS.gene026045:intron |
| GCTTGAAGCAAAAGGTTCCT+GGG | 0.534662 | 7.3:-2371300 | MS.gene026045:CDS |
| GAGTTTGGAATCATTCAAGA+TGG | 0.538373 | 7.3:+2372744 | None:intergenic |
| AAGAATACCAGAGCTCTCTT+CGG | 0.539836 | 7.3:-2370095 | MS.gene026045:CDS |
| GCAATGTTGCTTGAAGCAAA+AGG | 0.543383 | 7.3:-2371308 | MS.gene026045:CDS |
| CGATCCAAACTCGGCGCCGA+TGG | 0.544519 | 7.3:-2372721 | MS.gene026045:intron |
| TTCAAGGCAGTTGTAAGTTG+AGG | 0.545844 | 7.3:+2369785 | None:intergenic |
| ATCTCTAGCAGCCAAAGCGT+TGG | 0.547628 | 7.3:-2369843 | MS.gene026045:CDS |
| GCATATACCGAAGAGAGCTC+TGG | 0.553907 | 7.3:+2370088 | None:intergenic |
| AAGAACAAGGAAGATAAAGA+AGG | 0.555037 | 7.3:-2369878 | MS.gene026045:CDS |
| TCCAAACTCCGATCCAAACT+CGG | 0.556249 | 7.3:-2372730 | MS.gene026045:CDS |
| TCATGGCAGATCACGATGCA+TGG | 0.557684 | 7.3:-2370595 | MS.gene026045:CDS |
| TTCCCTCGTCAGAAAACTCA+AGG | 0.558152 | 7.3:-2372803 | MS.gene026045:CDS |
| CAGGTCGATAATGGTGGCGG+AGG | 0.567323 | 7.3:-2372841 | MS.gene026045:CDS |
| CTATTGCACAACTTACAAAA+GGG | 0.580815 | 7.3:-2369901 | MS.gene026045:CDS |
| AGCAGCCAAAGCGTTGGAGA+AGG | 0.584396 | 7.3:-2369837 | MS.gene026045:CDS |
| TCTGATAAAGTCCTCAAGCA+TGG | 0.590101 | 7.3:-2372772 | MS.gene026045:CDS |
| TACAGATCATCCATAAAAGG+AGG | 0.591043 | 7.3:-2370805 | MS.gene026045:intron |
| AAGGAGGGTGGCTATGGCAA+AGG | 0.598462 | 7.3:-2370789 | MS.gene026045:CDS |
| CATCGGCGCCGAGTTTGGAT+CGG | 0.608680 | 7.3:+2372722 | None:intergenic |
| ATTCAGGTCGATAATGGTGG+CGG | 0.610159 | 7.3:-2372844 | MS.gene026045:CDS |
| GTGGCTATGGCAAAGGCACA+AGG | 0.630715 | 7.3:-2370782 | MS.gene026045:CDS |
| AGATGGACAATCCATGCTTG+AGG | 0.636709 | 7.3:+2372761 | None:intergenic |
| TTCCCGGAGAGCAAAAGAGT+TGG | 0.639248 | 7.3:-2371946 | MS.gene026045:intron |
| TCCACTATTGACTTAACTGG+AGG | 0.645324 | 7.3:-2370119 | MS.gene026045:CDS |
| AAGTGATAAAGTGGTACAGT+TGG | 0.646636 | 7.3:+2370390 | None:intergenic |
| GAAATTCAGGTCGATAATGG+TGG | 0.656182 | 7.3:-2372847 | MS.gene026045:CDS |
| ACAGATCATCCATAAAAGGA+GGG | 0.667416 | 7.3:-2370804 | MS.gene026045:intron |
| ACTTACAAAAGGGAAGAACA+AGG | 0.669740 | 7.3:-2369891 | MS.gene026045:CDS |
| GATCATCCATAAAAGGAGGG+TGG | 0.671561 | 7.3:-2370801 | MS.gene026045:CDS |
| TGAGGACTTTATCAGAACGA+CGG | 0.672947 | 7.3:+2372779 | None:intergenic |
| AATTATTACAGGAAGGCTGG+AGG | 0.673966 | 7.3:-2371330 | MS.gene026045:intron |
| GGCACAAGGCAATATTTCTG+GGG | 0.681635 | 7.3:-2370768 | MS.gene026045:CDS |
| AAAGATGGTAACGAAAACAG+AGG | 0.716729 | 7.3:-2372890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTCATATATATT+TGG | + | chr7.3:2372016-2372035 | None:intergenic | 10.0% |
| !!! | AAAAAATTTAAAATTACAAG+CGG | - | chr7.3:2370848-2370867 | MS.gene026045:intron | 10.0% |
| !!! | AAACATTATTTTAACTTAAA+TGG | - | chr7.3:2372441-2372460 | MS.gene026045:intron | 10.0% |
| !!! | TAATATTTTACTTTTTTATC+AGG | - | chr7.3:2370654-2370673 | MS.gene026045:intron | 10.0% |
| !! | ATATGTAAAACAAACTTATT+TGG | + | chr7.3:2371237-2371256 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATACTTATT+TGG | + | chr7.3:2371288-2371307 | None:intergenic | 15.0% |
| !! | CAAATAAAAAAAAAACACAA+AGG | + | chr7.3:2372181-2372200 | None:intergenic | 15.0% |
| !!! | AAGTATCTTTAATTGATTTT+TGG | - | chr7.3:2371291-2371310 | MS.gene026045:CDS | 15.0% |
| !!! | AATAACCAAATTTTCTTTTT+TGG | - | chr7.3:2371810-2371829 | MS.gene026045:intron | 15.0% |
| !!! | TTATAACAATGACTAATTTT+TGG | - | chr7.3:2371516-2371535 | MS.gene026045:intron | 15.0% |
| !! | AATAAAAATCATACATTTGC+AGG | + | chr7.3:2372106-2372125 | None:intergenic | 20.0% |
| !! | ATAAAAATCATACATTTGCA+GGG | + | chr7.3:2372105-2372124 | None:intergenic | 20.0% |
| !! | TACCATATTAAATATGCAAT+CGG | + | chr7.3:2371682-2371701 | None:intergenic | 20.0% |
| !! | TATATGTGAACAATATATGA+AGG | + | chr7.3:2372685-2372704 | None:intergenic | 20.0% |
| !! | TTCACAATTAAACGAAATTT+AGG | + | chr7.3:2369966-2369985 | None:intergenic | 20.0% |
| !!! | AAGCAATATTTTCCTTTAAA+CGG | + | chr7.3:2371978-2371997 | None:intergenic | 20.0% |
| !!! | AGTTTCTTTTAGCAAATTTT+TGG | - | chr7.3:2371125-2371144 | MS.gene026045:intron | 20.0% |
| !!! | TTATTTGGAAATTTTCTAGT+GGG | + | chr7.3:2371273-2371292 | None:intergenic | 20.0% |
| !!! | TTGTAATTCTATGCTATTTA+GGG | - | chr7.3:2370226-2370245 | MS.gene026045:intron | 20.0% |
| !!! | TTTTGGTAACTAATTATTAC+AGG | - | chr7.3:2371308-2371327 | MS.gene026045:CDS | 20.0% |
| ! | AAATTGCAATGATTAACCTT+TGG | - | chr7.3:2370957-2370976 | MS.gene026045:intron | 25.0% |
| ! | ATTGAAGAATCTAGAAATTC+AGG | - | chr7.3:2369789-2369808 | MS.gene026045:CDS | 25.0% |
| ! | CAAAGCCAAAAAAGAAAATT+TGG | + | chr7.3:2371818-2371837 | None:intergenic | 25.0% |
| ! | GAAAAACATTAAACCACAAT+TGG | + | chr7.3:2370013-2370032 | None:intergenic | 25.0% |
| ! | TAAACCTTTATACCTTTATG+TGG | - | chr7.3:2370528-2370547 | MS.gene026045:intron | 25.0% |
| ! | TAATTTCTGAATTTGGATAG+TGG | - | chr7.3:2370490-2370509 | MS.gene026045:intron | 25.0% |
| ! | TAGGTTTAAATTGATACCAT+CGG | + | chr7.3:2369947-2369966 | None:intergenic | 25.0% |
| ! | TTGAGTAATGAAACCAAAAA+GGG | - | chr7.3:2371605-2371624 | MS.gene026045:intron | 25.0% |
| ! | TTGAGTCAATATAAGCTTAA+CGG | - | chr7.3:2370822-2370841 | MS.gene026045:intron | 25.0% |
| !! | AAAACTAGAGACTTTTAATC+AGG | + | chr7.3:2370612-2370631 | None:intergenic | 25.0% |
| !! | ATGTTTTATAACTCTTTGCT+AGG | + | chr7.3:2372427-2372446 | None:intergenic | 25.0% |
| !! | CTTATTTGGAAATTTTCTAG+TGG | + | chr7.3:2371274-2371293 | None:intergenic | 25.0% |
| !! | CTTGTAATTCTATGCTATTT+AGG | - | chr7.3:2370225-2370244 | MS.gene026045:intron | 25.0% |
| !! | TACCGATTGCATATTTAATA+TGG | - | chr7.3:2371677-2371696 | MS.gene026045:intron | 25.0% |
| !! | TCATTTGTAACTCAATTTTG+TGG | - | chr7.3:2370176-2370195 | MS.gene026045:CDS | 25.0% |
| !! | TGTAGAAGTTTGAAATGTAA+AGG | + | chr7.3:2371005-2371024 | None:intergenic | 25.0% |
| !!! | CTTTTAGCAAATTTTTGGAT+TGG | - | chr7.3:2371130-2371149 | MS.gene026045:intron | 25.0% |
| !!! | GTCTCTAGTTTTAGAATTTA+TGG | - | chr7.3:2370620-2370639 | MS.gene026045:intron | 25.0% |
| !!! | GTTTTTTTGTTGATTCAGAA+TGG | - | chr7.3:2370051-2370070 | MS.gene026045:intron | 25.0% |
| !!! | TTTTTATTTGTCTTCCTGTT+AGG | - | chr7.3:2372191-2372210 | MS.gene026045:intron | 25.0% |
| AACTCACTTAACCTTACTAT+CGG | - | chr7.3:2371428-2371447 | MS.gene026045:intron | 30.0% | |
| AAGAACAAGGAAGATAAAGA+AGG | - | chr7.3:2372771-2372790 | MS.gene026045:CDS | 30.0% | |
| AAGTATCTACTCTATGAGTT+AGG | - | chr7.3:2372297-2372316 | MS.gene026045:intron | 30.0% | |
| AGGCAACATAAAAAACATGA+TGG | + | chr7.3:2370555-2370574 | None:intergenic | 30.0% | |
| ATGATTTCCATTCTTTCAAG+AGG | - | chr7.3:2371169-2371188 | MS.gene026045:intron | 30.0% | |
| ATTTGAATATAGTCCTGCTT+TGG | - | chr7.3:2372640-2372659 | MS.gene026045:intron | 30.0% | |
| CATTACACTTTGAGTATACT+TGG | + | chr7.3:2371044-2371063 | None:intergenic | 30.0% | |
| CTATTGCACAACTTACAAAA+GGG | - | chr7.3:2372748-2372767 | MS.gene026045:CDS | 30.0% | |
| GCAACAGAAATAAATCACTA+CGG | + | chr7.3:2372144-2372163 | None:intergenic | 30.0% | |
| GCTCTTGTAATTTCTGAATT+TGG | - | chr7.3:2370483-2370502 | MS.gene026045:intron | 30.0% | |
| GGTAACTAATTATTACAGGA+AGG | - | chr7.3:2371312-2371331 | MS.gene026045:CDS | 30.0% | |
| GTTGAGTAATGAAACCAAAA+AGG | - | chr7.3:2371604-2371623 | MS.gene026045:intron | 30.0% | |
| TAAGATTTATGCTTCATCAC+CGG | + | chr7.3:2371499-2371518 | None:intergenic | 30.0% | |
| TAAGTTAATGAATAGCGCTA+CGG | + | chr7.3:2370281-2370300 | None:intergenic | 30.0% | |
| TGAAATTGAAGACCGTTTAA+AGG | - | chr7.3:2371963-2371982 | MS.gene026045:CDS | 30.0% | |
| TGATTTCCATTCTTTCAAGA+GGG | - | chr7.3:2371170-2371189 | MS.gene026045:intron | 30.0% | |
| TTGCTAAAAGAAACTAGAAC+TGG | + | chr7.3:2371120-2371139 | None:intergenic | 30.0% | |
| TTGTACAGATCATCCATAAA+AGG | - | chr7.3:2371841-2371860 | MS.gene026045:intron | 30.0% | |
| ! | AGCAAATGTAACTGTTGTTT+AGG | - | chr7.3:2370920-2370939 | MS.gene026045:intron | 30.0% |
| ! | CACTTGACTCTTTTATGATA+CGG | - | chr7.3:2370404-2370423 | MS.gene026045:CDS | 30.0% |
| ! | TTTTTATGTTGCCTGAATTG+AGG | - | chr7.3:2370561-2370580 | MS.gene026045:CDS | 30.0% |
| !! | TCTTACTTTGCATTTTCAAG+AGG | - | chr7.3:2371703-2371722 | MS.gene026045:intron | 30.0% |
| !! | TTAGCAAATTTTTGGATTGG+TGG | - | chr7.3:2371133-2371152 | MS.gene026045:intron | 30.0% |
| !!! | TAGCAAATTTTTGGATTGGT+GGG | - | chr7.3:2371134-2371153 | MS.gene026045:intron | 30.0% |
| AAACGGTCTTCAATTTCAGA+TGG | + | chr7.3:2371961-2371980 | None:intergenic | 35.0% | |
| AACGGTCTTCAATTTCAGAT+GGG | + | chr7.3:2371960-2371979 | None:intergenic | 35.0% | |
| AAGATTTATGCTTCATCACC+GGG | + | chr7.3:2371498-2371517 | None:intergenic | 35.0% | |
| AAGTCAACTACTTCCAATTG+TGG | - | chr7.3:2369997-2370016 | MS.gene026045:intron | 35.0% | |
| AAGTGATAAAGTGGTACAGT+TGG | + | chr7.3:2372262-2372281 | None:intergenic | 35.0% | |
| AATCACTACGGAAAGAGAAA+CGG | + | chr7.3:2372132-2372151 | None:intergenic | 35.0% | |
| ACAGATCATCCATAAAAGGA+GGG | - | chr7.3:2371845-2371864 | MS.gene026045:intron | 35.0% | |
| ACTAATTATTACAGGAAGGC+TGG | - | chr7.3:2371316-2371335 | MS.gene026045:CDS | 35.0% | |
| ACTCACTTAACCTTACTATC+GGG | - | chr7.3:2371429-2371448 | MS.gene026045:intron | 35.0% | |
| ACTTACAAAAGGGAAGAACA+AGG | - | chr7.3:2372758-2372777 | MS.gene026045:CDS | 35.0% | |
| AGAACTGGACATCAATAATC+AGG | + | chr7.3:2371105-2371124 | None:intergenic | 35.0% | |
| AGTGAGTTTACTTGATCAAG+AGG | + | chr7.3:2371416-2371435 | None:intergenic | 35.0% | |
| AGTGGATGCATAGTATTTCT+TGG | + | chr7.3:2372516-2372535 | None:intergenic | 35.0% | |
| ATGTAGCAAATCCTCAATTC+AGG | + | chr7.3:2370575-2370594 | None:intergenic | 35.0% | |
| ATTGTTACTCAAGAAAGCCT+AGG | + | chr7.3:2371793-2371812 | None:intergenic | 35.0% | |
| CAGAATCGTGAACTTGTAAA+TGG | + | chr7.3:2372618-2372637 | None:intergenic | 35.0% | |
| CATAGTATTTCTTGGCAGTT+TGG | + | chr7.3:2372508-2372527 | None:intergenic | 35.0% | |
| CGACAATGTTAAACTCTTCA+AGG | + | chr7.3:2372883-2372902 | None:intergenic | 35.0% | |
| CTAGAAATTCAGGTCGATAA+TGG | - | chr7.3:2369799-2369818 | MS.gene026045:CDS | 35.0% | |
| CTTTAACCTTCTAATAGTCC+AGG | - | chr7.3:2371578-2371597 | MS.gene026045:intron | 35.0% | |
| GAACTGGACATCAATAATCA+GGG | + | chr7.3:2371104-2371123 | None:intergenic | 35.0% | |
| GCATATGCTAAGTGATAAAG+TGG | + | chr7.3:2372271-2372290 | None:intergenic | 35.0% | |
| GCTATTGCACAACTTACAAA+AGG | - | chr7.3:2372747-2372766 | MS.gene026045:CDS | 35.0% | |
| GTAGCGCTATTCATTAACTT+AGG | - | chr7.3:2370280-2370299 | MS.gene026045:intron | 35.0% | |
| GTTATTAGAGTGAAGAAACC+CGG | + | chr7.3:2372362-2372381 | None:intergenic | 35.0% | |
| TACAGATCATCCATAAAAGG+AGG | - | chr7.3:2371844-2371863 | MS.gene026045:intron | 35.0% | |
| TAGTGAGGCTCTATAGTATT+AGG | + | chr7.3:2371634-2371653 | None:intergenic | 35.0% | |
| TCATTAACTTAGGCTCTGTT+TGG | - | chr7.3:2370290-2370309 | MS.gene026045:intron | 35.0% | |
| TGATATCTACTAACCAAAGC+AGG | + | chr7.3:2372656-2372675 | None:intergenic | 35.0% | |
| TTATTAGAGTGAAGAAACCC+GGG | + | chr7.3:2372361-2372380 | None:intergenic | 35.0% | |
| ! | AGACTTTTAATCAGGCATGA+AGG | + | chr7.3:2370604-2370623 | None:intergenic | 35.0% |
| ! | GAGTTTGGAATCATTCAAGA+TGG | + | chr7.3:2369908-2369927 | None:intergenic | 35.0% |
| ! | TCCTCATTTTCACAGATTCA+TGG | - | chr7.3:2372037-2372056 | MS.gene026045:intron | 35.0% |
| ! | TGGACCACATAAAGGTATAA+AGG | + | chr7.3:2370535-2370554 | None:intergenic | 35.0% |
| ! | TTTTTATCAGGACTGCACAA+AGG | - | chr7.3:2370666-2370685 | MS.gene026045:intron | 35.0% |
| !! | AAACATGATGGACCACATAA+AGG | + | chr7.3:2370543-2370562 | None:intergenic | 35.0% |
| !! | AACCTTTGGCATCTTTGTTT+TGG | - | chr7.3:2370971-2370990 | MS.gene026045:intron | 35.0% |
| !! | ATATTTCTGGGGCTATTGAA+TGG | - | chr7.3:2371892-2371911 | MS.gene026045:intron | 35.0% |
| !! | TACTTTGCATTTTCAAGAGG+CGG | - | chr7.3:2371706-2371725 | MS.gene026045:intron | 35.0% |
| !! | TAGTATTAGGTTGCCCTTTT+TGG | + | chr7.3:2371621-2371640 | None:intergenic | 35.0% |
| !! | TGGTGAGTGTTTATTTTCTG+TGG | - | chr7.3:2372585-2372604 | MS.gene026045:intron | 35.0% |
| !! | TTAACTTAAATGGTGTTGCC+AGG | - | chr7.3:2372451-2372470 | MS.gene026045:intron | 35.0% |
| !!! | ACCTTTGGCATCTTTGTTTT+GGG | - | chr7.3:2370972-2370991 | MS.gene026045:intron | 35.0% |
| AACCAGTACCATCTAACACA+TGG | + | chr7.3:2370444-2370463 | None:intergenic | 40.0% | |
| AAGAATACCAGAGCTCTCTT+CGG | - | chr7.3:2372554-2372573 | MS.gene026045:CDS | 40.0% | |
| AAGGCACAAGGCAATATTTC+TGG | - | chr7.3:2371879-2371898 | MS.gene026045:intron | 40.0% | |
| AATTATTACAGGAAGGCTGG+AGG | - | chr7.3:2371319-2371338 | MS.gene026045:CDS | 40.0% | |
| ACCCAAAACAAAGATGCCAA+AGG | + | chr7.3:2370976-2370995 | None:intergenic | 40.0% | |
| ACCTTACTATCGGGGAAAAA+AGG | - | chr7.3:2371438-2371457 | MS.gene026045:intron | 40.0% | |
| ACTATAGAGCCTCACTATAG+TGG | - | chr7.3:2371637-2371656 | MS.gene026045:intron | 40.0% | |
| AGACAGCTGTTACATTTGCA+GGG | + | chr7.3:2370896-2370915 | None:intergenic | 40.0% | |
| AGCAACTTAAATCCACAGCA+CGG | + | chr7.3:2370760-2370779 | None:intergenic | 40.0% | |
| AGGCACAAGGCAATATTTCT+GGG | - | chr7.3:2371880-2371899 | MS.gene026045:intron | 40.0% | |
| AGGTAAACCCATACATCTCT+AGG | + | chr7.3:2372407-2372426 | None:intergenic | 40.0% | |
| ATCCATGTGTTAGATGGTAC+TGG | - | chr7.3:2370439-2370458 | MS.gene026045:CDS | 40.0% | |
| ATTGCGTCCTAGAGATGTAT+GGG | - | chr7.3:2372397-2372416 | MS.gene026045:intron | 40.0% | |
| CATCTAACACATGGATCTCT+CGG | + | chr7.3:2370435-2370454 | None:intergenic | 40.0% | |
| CCTTACTATCGGGGAAAAAA+GGG | - | chr7.3:2371439-2371458 | MS.gene026045:intron | 40.0% | |
| CTATAGAGCCTCACTATAGT+GGG | - | chr7.3:2371638-2371657 | MS.gene026045:intron | 40.0% | |
| CTCACTTAACCTTACTATCG+GGG | - | chr7.3:2371430-2371449 | MS.gene026045:intron | 40.0% | |
| CTTACTATCGGGGAAAAAAG+GGG | - | chr7.3:2371440-2371459 | MS.gene026045:intron | 40.0% | |
| GCCATGAATCTGTGAAAATG+AGG | + | chr7.3:2372041-2372060 | None:intergenic | 40.0% | |
| GCTGCTTGTTTATACCTAAC+AGG | + | chr7.3:2372208-2372227 | None:intergenic | 40.0% | |
| GGACATCAATAATCAGGGAA+CGG | + | chr7.3:2371099-2371118 | None:intergenic | 40.0% | |
| GTTAGTTGATCAGTTACTCC+CGG | - | chr7.3:2371477-2371496 | MS.gene026045:intron | 40.0% | |
| TAGACAGCTGTTACATTTGC+AGG | + | chr7.3:2370897-2370916 | None:intergenic | 40.0% | |
| TAGCATCCCTCTTGAAAGAA+TGG | + | chr7.3:2371179-2371198 | None:intergenic | 40.0% | |
| TAGGGAATCTTATGCATAGC+TGG | - | chr7.3:2370244-2370263 | MS.gene026045:intron | 40.0% | |
| TATTGCGTCCTAGAGATGTA+TGG | - | chr7.3:2372396-2372415 | MS.gene026045:intron | 40.0% | |
| TCAATGTCTTGATGTTGCTC+AGG | - | chr7.3:2370112-2370131 | MS.gene026045:CDS | 40.0% | |
| TCTGATAAAGTCCTCAAGCA+TGG | - | chr7.3:2369877-2369896 | MS.gene026045:CDS | 40.0% | |
| TGAGGACTTTATCAGAACGA+CGG | + | chr7.3:2369873-2369892 | None:intergenic | 40.0% | |
| TGCAAATGTAACAGCTGTCT+AGG | - | chr7.3:2370896-2370915 | MS.gene026045:intron | 40.0% | |
| TTCAAGGCAGTTGTAAGTTG+AGG | + | chr7.3:2372867-2372886 | None:intergenic | 40.0% | |
| ! | AGAATGGACTTTGTATGAGC+AGG | - | chr7.3:2370067-2370086 | MS.gene026045:intron | 40.0% |
| ! | CCTCACTATAGTGGGATTTA+GGG | - | chr7.3:2371646-2371665 | MS.gene026045:intron | 40.0% |
| ! | CTCACTATAGTGGGATTTAG+GGG | - | chr7.3:2371647-2371666 | MS.gene026045:intron | 40.0% |
| ! | GAAATTCAGGTCGATAATGG+TGG | - | chr7.3:2369802-2369821 | MS.gene026045:CDS | 40.0% |
| ! | GCAATGTTGCTTGAAGCAAA+AGG | - | chr7.3:2371341-2371360 | MS.gene026045:intron | 40.0% |
| ! | TTACCAACTCTTTTGCTCTC+CGG | + | chr7.3:2370709-2370728 | None:intergenic | 40.0% |
| !! | AAAAGCGTACTCAAGCCTTT+TGG | - | chr7.3:2371382-2371401 | MS.gene026045:intron | 40.0% |
| !! | AGTAGCAACTGTTAGGTTGA+TGG | + | chr7.3:2370796-2370815 | None:intergenic | 40.0% |
| !! | CATCTCTAGGACGCAATATT+CGG | + | chr7.3:2372394-2372413 | None:intergenic | 40.0% |
| !! | GCATCCACTATTGACTTAAC+TGG | - | chr7.3:2372527-2372546 | MS.gene026045:intron | 40.0% |
| !! | TCCACTATTGACTTAACTGG+AGG | - | chr7.3:2372530-2372549 | MS.gene026045:intron | 40.0% |
| AACCAGCCTGGACTATTAGA+AGG | + | chr7.3:2371587-2371606 | None:intergenic | 45.0% | |
| AACCTTCTAATAGTCCAGGC+TGG | - | chr7.3:2371582-2371601 | MS.gene026045:intron | 45.0% | |
| AGAGTCAAGTGACAAGAGAC+AGG | + | chr7.3:2370395-2370414 | None:intergenic | 45.0% | |
| AGATGGACAATCCATGCTTG+AGG | + | chr7.3:2369891-2369910 | None:intergenic | 45.0% | |
| AGCAAAAGGTTCCTGGGAAA+AGG | - | chr7.3:2371355-2371374 | MS.gene026045:intron | 45.0% | |
| AGCAGACAGTAGCAACTGTT+AGG | + | chr7.3:2370803-2370822 | None:intergenic | 45.0% | |
| AGCTCTCTTCGGTATATGCT+TGG | - | chr7.3:2372565-2372584 | MS.gene026045:CDS | 45.0% | |
| CAAGAGGATTGTCCTCCAAA+AGG | + | chr7.3:2371400-2371419 | None:intergenic | 45.0% | |
| CAGGTACTTTATACGCTTGG+TGG | - | chr7.3:2372470-2372489 | MS.gene026045:intron | 45.0% | |
| CCCTAAATCCCACTATAGTG+AGG | + | chr7.3:2371649-2371668 | None:intergenic | 45.0% | |
| CGAGAGATCCATGTGTTAGA+TGG | - | chr7.3:2370433-2370452 | MS.gene026045:CDS | 45.0% | |
| GAGTCAAGTGACAAGAGACA+GGG | + | chr7.3:2370394-2370413 | None:intergenic | 45.0% | |
| GATCATCCATAAAAGGAGGG+TGG | - | chr7.3:2371848-2371867 | MS.gene026045:intron | 45.0% | |
| GCCTCCAGTTAAGTCAATAG+TGG | + | chr7.3:2372534-2372553 | None:intergenic | 45.0% | |
| GCTTGAAGCAAAAGGTTCCT+GGG | - | chr7.3:2371349-2371368 | MS.gene026045:intron | 45.0% | |
| GTAATCCTTCTCCAACGCTT+TGG | + | chr7.3:2372820-2372839 | None:intergenic | 45.0% | |
| GTTTCATTACTCAACCAGCC+TGG | + | chr7.3:2371599-2371618 | None:intergenic | 45.0% | |
| TCCAAACTCCGATCCAAACT+CGG | - | chr7.3:2369919-2369938 | MS.gene026045:intron | 45.0% | |
| TGCCAGGTACTTTATACGCT+TGG | - | chr7.3:2372467-2372486 | MS.gene026045:intron | 45.0% | |
| TGCTTGAAGCAAAAGGTTCC+TGG | - | chr7.3:2371348-2371367 | MS.gene026045:intron | 45.0% | |
| TTCCCTCGTCAGAAAACTCA+AGG | - | chr7.3:2369846-2369865 | MS.gene026045:CDS | 45.0% | |
| ! | ACAAGCAGCATTTTGCTACG+AGG | - | chr7.3:2372219-2372238 | MS.gene026045:intron | 45.0% |
| ! | ACTATAGTGGGATTTAGGGG+AGG | - | chr7.3:2371650-2371669 | MS.gene026045:intron | 45.0% |
| ! | ATTCAGGTCGATAATGGTGG+CGG | - | chr7.3:2369805-2369824 | MS.gene026045:CDS | 45.0% |
| ! | CACCAAGCGTATAAAGTACC+TGG | + | chr7.3:2372472-2372491 | None:intergenic | 45.0% |
| ! | CTATAGTGGGATTTAGGGGA+GGG | - | chr7.3:2371651-2371670 | MS.gene026045:intron | 45.0% |
| ! | GACCTTGAGTTTTCTGACGA+GGG | + | chr7.3:2369851-2369870 | None:intergenic | 45.0% |
| ! | GCCTCACTATAGTGGGATTT+AGG | - | chr7.3:2371645-2371664 | MS.gene026045:intron | 45.0% |
| ! | GGCACAAGGCAATATTTCTG+GGG | - | chr7.3:2371881-2371900 | MS.gene026045:intron | 45.0% |
| ! | GTAAGTTGAGGAAGCTTGTC+AGG | + | chr7.3:2372855-2372874 | None:intergenic | 45.0% |
| ! | GTGTGCAGTTGCTTGTGTTT+TGG | + | chr7.3:2371077-2371096 | None:intergenic | 45.0% |
| ! | TACCAACTCTTTTGCTCTCC+GGG | + | chr7.3:2370708-2370727 | None:intergenic | 45.0% |
| !!! | CCCTTTTTTCCCCGATAGTA+AGG | + | chr7.3:2371442-2371461 | None:intergenic | 45.0% |
| ACCTGTTATCTCCCGTCACA+CGG | - | chr7.3:2371747-2371766 | MS.gene026045:intron | 50.0% | |
| ACTATCGGGGAAAAAAGGGG+AGG | - | chr7.3:2371443-2371462 | MS.gene026045:intron | 50.0% | |
| AGGACTGCACAAAGGCTCTT+CGG | - | chr7.3:2370674-2370693 | MS.gene026045:intron | 50.0% | |
| ATCTCTAGCAGCCAAAGCGT+TGG | - | chr7.3:2372806-2372825 | MS.gene026045:CDS | 50.0% | |
| CCATAAAAGGAGGGTGGCTA+TGG | - | chr7.3:2371854-2371873 | MS.gene026045:intron | 50.0% | |
| CTATCGGGGAAAAAAGGGGA+GGG | - | chr7.3:2371444-2371463 | MS.gene026045:intron | 50.0% | |
| GAGACAGGGAAGAGTCTGTT+TGG | + | chr7.3:2370380-2370399 | None:intergenic | 50.0% | |
| GCATATACCGAAGAGAGCTC+TGG | + | chr7.3:2372564-2372583 | None:intergenic | 50.0% | |
| TATCGGGGAAAAAAGGGGAG+GGG | - | chr7.3:2371445-2371464 | MS.gene026045:intron | 50.0% | |
| TCAAATTCTTCCCCGTCTCC+CGG | - | chr7.3:2372340-2372359 | MS.gene026045:intron | 50.0% | |
| TCATGGCAGATCACGATGCA+TGG | - | chr7.3:2372054-2372073 | MS.gene026045:intron | 50.0% | |
| TCTACGTCTTTACCGTGCTG+TGG | - | chr7.3:2370745-2370764 | MS.gene026045:CDS | 50.0% | |
| TTCCCGGAGAGCAAAAGAGT+TGG | - | chr7.3:2370703-2370722 | MS.gene026045:intron | 50.0% | |
| TTGGAGTTGCTTCCGTGTGA+CGG | + | chr7.3:2371762-2371781 | None:intergenic | 50.0% | |
| ! | AGCGTACTCAAGCCTTTTGG+AGG | - | chr7.3:2371385-2371404 | MS.gene026045:intron | 50.0% |
| ! | CCATAGCCACCCTCCTTTTA+TGG | + | chr7.3:2371857-2371876 | None:intergenic | 50.0% |
| ! | GCAGGGCTCTATCTAAGATC+AGG | + | chr7.3:2370879-2370898 | None:intergenic | 50.0% |
| ! | GGACCTTGAGTTTTCTGACG+AGG | + | chr7.3:2369852-2369871 | None:intergenic | 50.0% |
| ! | GTGCAATAGCAGAAGTGCAC+TGG | + | chr7.3:2372737-2372756 | None:intergenic | 50.0% |
| !!! | CGCTTTTTCTGCCTTTTCCC+AGG | + | chr7.3:2371369-2371388 | None:intergenic | 50.0% |
| AAGGAGGGTGGCTATGGCAA+AGG | - | chr7.3:2371860-2371879 | MS.gene026045:intron | 55.0% | |
| AGTGAAGAAACCCGGGAGAC+GGG | + | chr7.3:2372354-2372373 | None:intergenic | 55.0% | |
| ATCGGGGAAAAAAGGGGAGG+GGG | - | chr7.3:2371446-2371465 | MS.gene026045:intron | 55.0% | |
| CAAATTCTTCCCCGTCTCCC+GGG | - | chr7.3:2372341-2372360 | MS.gene026045:intron | 55.0% | |
| CAACTCCAACTGTTGCGCCT+AGG | - | chr7.3:2371773-2371792 | MS.gene026045:intron | 55.0% | |
| GAAAGCCTAGGCGCAACAGT+TGG | + | chr7.3:2371781-2371800 | None:intergenic | 55.0% | |
| GAGTGAAGAAACCCGGGAGA+CGG | + | chr7.3:2372355-2372374 | None:intergenic | 55.0% | |
| GCACAAAGGCTCTTCGGAAG+AGG | - | chr7.3:2370680-2370699 | MS.gene026045:intron | 55.0% | |
| GCAGGTTGCAGTTGCTGCTA+TGG | - | chr7.3:2370085-2370104 | MS.gene026045:CDS | 55.0% | |
| GCCGAGTTTGGATCGGAGTT+TGG | + | chr7.3:2369923-2369942 | None:intergenic | 55.0% | |
| TGGAGTTGCTTCCGTGTGAC+GGG | + | chr7.3:2371761-2371780 | None:intergenic | 55.0% | |
| ! | GTGGCTATGGCAAAGGCACA+AGG | - | chr7.3:2371867-2371886 | MS.gene026045:intron | 55.0% |
| ! | TCCGTGTGACGGGAGATAAC+AGG | + | chr7.3:2371751-2371770 | None:intergenic | 55.0% |
| !! | AGCAGCCAAAGCGTTGGAGA+AGG | - | chr7.3:2372812-2372831 | MS.gene026045:CDS | 55.0% |
| !! | ATAATGGTGGCGGAGGAGCT+TGG | - | chr7.3:2369815-2369834 | MS.gene026045:CDS | 55.0% |
| !! | TAATGGTGGCGGAGGAGCTT+GGG | - | chr7.3:2369816-2369835 | MS.gene026045:CDS | 55.0% |
| GGCTCTTCGGAAGAGGTTCC+CGG | - | chr7.3:2370687-2370706 | MS.gene026045:intron | 60.0% | |
| GTGAAGAAACCCGGGAGACG+GGG | + | chr7.3:2372353-2372372 | None:intergenic | 60.0% | |
| TCGGGGAAAAAAGGGGAGGG+GGG | - | chr7.3:2371447-2371466 | MS.gene026045:intron | 60.0% | |
| ! | CATCGGCGCCGAGTTTGGAT+CGG | + | chr7.3:2369930-2369949 | None:intergenic | 60.0% |
| ! | GATACCATCGGCGCCGAGTT+TGG | + | chr7.3:2369935-2369954 | None:intergenic | 60.0% |
| !! | CAGGTCGATAATGGTGGCGG+AGG | - | chr7.3:2369808-2369827 | MS.gene026045:CDS | 60.0% |
| ! | CGATCCAAACTCGGCGCCGA+TGG | - | chr7.3:2369928-2369947 | MS.gene026045:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2369763 | 2372908 | 2369763 | ID=MS.gene026045 |
| chr7.3 | mRNA | 2369763 | 2372908 | 2369763 | ID=MS.gene026045.t1;Parent=MS.gene026045 |
| chr7.3 | exon | 2372722 | 2372908 | 2372722 | ID=MS.gene026045.t1.exon1;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2372722 | 2372908 | 2372722 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2372538 | 2372602 | 2372538 | ID=MS.gene026045.t1.exon2;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2372538 | 2372602 | 2372538 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2371947 | 2371995 | 2371947 | ID=MS.gene026045.t1.exon3;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2371947 | 2371995 | 2371947 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2371247 | 2371341 | 2371247 | ID=MS.gene026045.t1.exon4;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2371247 | 2371341 | 2371247 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2370737 | 2370822 | 2370737 | ID=MS.gene026045.t1.exon5;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2370737 | 2370822 | 2370737 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2370560 | 2370619 | 2370560 | ID=MS.gene026045.t1.exon6;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2370560 | 2370619 | 2370560 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2370377 | 2370458 | 2370377 | ID=MS.gene026045.t1.exon7;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2370377 | 2370458 | 2370377 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2370085 | 2370198 | 2370085 | ID=MS.gene026045.t1.exon8;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2370085 | 2370198 | 2370085 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| chr7.3 | exon | 2369763 | 2369933 | 2369763 | ID=MS.gene026045.t1.exon9;Parent=MS.gene026045.t1 |
| chr7.3 | CDS | 2369763 | 2369933 | 2369763 | ID=cds.MS.gene026045.t1;Parent=MS.gene026045.t1 |
| Gene Sequence |
| Protein sequence |
