Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024742.t1 | XP_013453356.1 | 86.1 | 187 | 24 | 2 | 1 | 186 | 43 | 228 | 3.60E-85 | 324.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024742.t1 | Q8S8T8 | 55.1 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 1.7e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024742.t1 | A0A072UD93 | 86.1 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 2.6e-85 | 324.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024742 | MS.gene85123 | PPI |
| MS.gene024742 | MS.gene47804 | PPI |
| MS.gene36326 | MS.gene024742 | PPI |
| MS.gene76507 | MS.gene024742 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024742.t1 | MTR_5g008240 | 86.096 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 4.03e-113 | 322 |
| MS.gene024742.t1 | MTR_5g008240 | 86.096 | 187 | 24 | 2 | 1 | 186 | 1 | 186 | 1.12e-112 | 318 |
| MS.gene024742.t1 | MTR_5g008240 | 86.096 | 187 | 24 | 2 | 1 | 186 | 43 | 228 | 1.18e-112 | 320 |
| MS.gene024742.t1 | MTR_5g008240 | 84.091 | 132 | 19 | 2 | 56 | 186 | 38 | 168 | 8.22e-73 | 217 |
| MS.gene024742.t1 | MTR_8g104890 | 33.333 | 132 | 73 | 4 | 32 | 163 | 25 | 141 | 1.86e-13 | 65.5 |
| MS.gene024742.t1 | MTR_3g408350 | 31.847 | 157 | 89 | 6 | 41 | 182 | 59 | 212 | 1.23e-12 | 64.3 |
| MS.gene024742.t1 | MTR_4g086330 | 30.872 | 149 | 76 | 8 | 38 | 177 | 61 | 191 | 1.48e-11 | 60.8 |
| MS.gene024742.t1 | MTR_0172s0050 | 27.976 | 168 | 92 | 6 | 41 | 186 | 63 | 223 | 2.07e-11 | 61.2 |
| MS.gene024742.t1 | MTR_8g104830 | 30.667 | 150 | 85 | 5 | 36 | 182 | 4 | 137 | 5.33e-11 | 58.5 |
| MS.gene024742.t1 | MTR_4g086320 | 30.827 | 133 | 71 | 6 | 32 | 161 | 42 | 156 | 7.48e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024742.t1 | AT2G40935 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.24e-67 | 203 |
| MS.gene024742.t1 | AT2G40935 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.24e-67 | 203 |
| MS.gene024742.t1 | AT2G40935 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.24e-67 | 203 |
| MS.gene024742.t1 | AT2G40935 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.24e-67 | 203 |
| MS.gene024742.t1 | AT2G40935 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.24e-67 | 203 |
| MS.gene024742.t1 | AT2G40935 | 49.198 | 187 | 77 | 5 | 2 | 182 | 3 | 177 | 3.48e-54 | 170 |
| MS.gene024742.t1 | AT2G40935 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.12e-44 | 145 |
| MS.gene024742.t1 | AT2G40935 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.12e-44 | 145 |
| MS.gene024742.t1 | AT2G40935 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.12e-44 | 145 |
| MS.gene024742.t1 | AT5G35525 | 31.250 | 160 | 81 | 6 | 29 | 177 | 4 | 145 | 3.24e-12 | 61.6 |
| MS.gene024742.t1 | AT1G14870 | 29.518 | 166 | 85 | 7 | 23 | 177 | 1 | 145 | 1.16e-11 | 60.5 |
| MS.gene024742.t1 | AT1G14870 | 30.070 | 143 | 79 | 5 | 30 | 169 | 5 | 129 | 3.05e-11 | 58.9 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGAATGCAGAATTTC+TGG | 0.136909 | 5.3:+2666625 | MS.gene024742:CDS |
| CTTTGTCCTTGCTACCTCTT+TGG | 0.163797 | 5.3:+2666605 | MS.gene024742:CDS |
| CAAGACTCCACAATATAAAA+TGG | 0.183305 | 5.3:-2666679 | None:intergenic |
| GGATCAAATCAATGGTCTTC+TGG | 0.256294 | 5.3:+2665548 | MS.gene024742:CDS |
| CTGGGTTCTGGCACGTTCAT+GGG | 0.276161 | 5.3:+2666644 | MS.gene024742:CDS |
| CAAATTATACTTTGATCTTA+AGG | 0.284771 | 5.3:-2666792 | None:intergenic |
| TCTGGGTTCTGGCACGTTCA+TGG | 0.317800 | 5.3:+2666643 | MS.gene024742:CDS |
| AATGCAGAATTTCTGGGTTC+TGG | 0.323080 | 5.3:+2666632 | MS.gene024742:CDS |
| TTTGTCCTTGCTACCTCTTT+GGG | 0.333564 | 5.3:+2666606 | MS.gene024742:CDS |
| GGCTTCTGTGCAGGTTGTAT+AGG | 0.363558 | 5.3:+2666578 | MS.gene024742:intron |
| CAGCTCTTTCGCGTATTTCA+CGG | 0.371837 | 5.3:-2667760 | None:intergenic |
| AAGATCAAAGTATAATTTGC+CGG | 0.391461 | 5.3:+2666796 | MS.gene024742:CDS |
| TGGAATCTGACTGCATTGTC+TGG | 0.399372 | 5.3:-2667835 | None:intergenic |
| GGGAAGAATGCAGAATTTCT+GGG | 0.403517 | 5.3:+2666626 | MS.gene024742:CDS |
| GTGAAATACGCGAAAGAGCT+GGG | 0.429175 | 5.3:+2667762 | MS.gene024742:CDS |
| TCCACCTGCTTACATCCCAT+TGG | 0.441939 | 5.3:+2665463 | MS.gene024742:CDS |
| CCACCTGCTTACATCCCATT+GGG | 0.443393 | 5.3:+2665464 | MS.gene024742:CDS |
| CGTGAAATACGCGAAAGAGC+TGG | 0.454935 | 5.3:+2667761 | MS.gene024742:CDS |
| AGGGTTGTGGCATTACTGAT+TGG | 0.487313 | 5.3:-2667855 | None:intergenic |
| AAGACTCCACAATATAAAAT+GGG | 0.490249 | 5.3:-2666678 | None:intergenic |
| AGGTAAGTTCACAGACTTTG+AGG | 0.504528 | 5.3:+2667420 | MS.gene024742:CDS |
| ATTTCTCTTGAAAACACTCC+AGG | 0.515163 | 5.3:+2667451 | MS.gene024742:CDS |
| GGTAAGTTCACAGACTTTGA+GGG | 0.515533 | 5.3:+2667421 | MS.gene024742:CDS |
| GACTGCATTGTCTGGACAGG+TGG | 0.519769 | 5.3:-2667827 | None:intergenic |
| TCTGAATCTGATTGACCCAA+TGG | 0.522303 | 5.3:-2665479 | None:intergenic |
| TCTGACTGCATTGTCTGGAC+AGG | 0.526290 | 5.3:-2667830 | None:intergenic |
| ATTCTGCATTCTTCCCAAAG+AGG | 0.532916 | 5.3:-2666619 | None:intergenic |
| GCCTGCTGCTTATTAACCGA+TGG | 0.548925 | 5.3:+2666710 | MS.gene024742:CDS |
| TCTCCTCTACACCATGGTGG+TGG | 0.555785 | 5.3:+2665515 | MS.gene024742:CDS |
| CACAAGCATAACACGAAACA+AGG | 0.556012 | 5.3:-2666757 | None:intergenic |
| GTAGCAATGGATCAAATCAA+TGG | 0.556803 | 5.3:+2665540 | MS.gene024742:CDS |
| CATGGTGGTGGTAGTAGCAA+TGG | 0.568325 | 5.3:+2665527 | MS.gene024742:CDS |
| TGAAGCTACAGATATGAAGC+TGG | 0.570972 | 5.3:+2667790 | MS.gene024742:CDS |
| GCCATCGGTTAATAAGCAGC+AGG | 0.572611 | 5.3:-2666711 | None:intergenic |
| TGACCCAATGGGATGTAAGC+AGG | 0.573937 | 5.3:-2665467 | None:intergenic |
| TTCTTCCCAAAGAGGTAGCA+AGG | 0.573956 | 5.3:-2666611 | None:intergenic |
| TGGGTTCTGGCACGTTCATG+GGG | 0.574682 | 5.3:+2666645 | MS.gene024742:CDS |
| TAACACGAAACAAGGCATCC+AGG | 0.577372 | 5.3:-2666749 | None:intergenic |
| CTTGTTTCGTGTTATGCTTG+TGG | 0.581137 | 5.3:+2666758 | MS.gene024742:CDS |
| CTGAATCTGATTGACCCAAT+GGG | 0.585943 | 5.3:-2665478 | None:intergenic |
| CTACCACCACCATGGTGTAG+AGG | 0.589434 | 5.3:-2665518 | None:intergenic |
| TCCATTATTATGAAGAACCA+AGG | 0.591583 | 5.3:+2665431 | None:intergenic |
| ACTTTGATCTTAAGGTATTG+CGG | 0.618835 | 5.3:-2666784 | None:intergenic |
| TGAAATACGCGAAAGAGCTG+GGG | 0.629440 | 5.3:+2667763 | MS.gene024742:CDS |
| CCCAATGGGATGTAAGCAGG+TGG | 0.640544 | 5.3:-2665464 | None:intergenic |
| CAGGTGGAACATAACCACCT+TGG | 0.653627 | 5.3:-2665448 | None:intergenic |
| CATTGCTACTACCACCACCA+TGG | 0.662654 | 5.3:-2665526 | None:intergenic |
| GTCTCTCCTCTACACCATGG+TGG | 0.675080 | 5.3:+2665512 | MS.gene024742:CDS |
| ATTATTATGAAGAACCAAGG+TGG | 0.688442 | 5.3:+2665434 | None:intergenic |
| AGTGTCTCTCCTCTACACCA+TGG | 0.703188 | 5.3:+2665509 | MS.gene024742:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTGATGTATATATAAA+GGG | + | chr5.3:2666260-2666279 | MS.gene024742:intron | 10.0% |
| !! | AAAAATCATTTGACTAATTA+CGG | - | chr5.3:2666421-2666440 | None:intergenic | 15.0% |
| !! | AGTAAATTTGAAGAATAATT+AGG | + | chr5.3:2667023-2667042 | MS.gene024742:intron | 15.0% |
| !! | GTTATTTGATGTATATATAA+AGG | + | chr5.3:2666259-2666278 | MS.gene024742:intron | 15.0% |
| !! | TTAATAATGAAAAGAAAATC+TGG | + | chr5.3:2667627-2667646 | MS.gene024742:intron | 15.0% |
| !! | ACATCCAAAAAATTTAGATT+GGG | - | chr5.3:2667593-2667612 | None:intergenic | 20.0% |
| !! | AGAAATTGAAATAAACTTGT+AGG | + | chr5.3:2667346-2667365 | MS.gene024742:intron | 20.0% |
| !! | ATAAAATTTGATGTAAAGCA+TGG | - | chr5.3:2666836-2666855 | None:intergenic | 20.0% |
| !! | ATGTGATAAAAATGAAAGAA+AGG | + | chr5.3:2667201-2667220 | MS.gene024742:intron | 20.0% |
| !! | CAAATTATACTTTGATCTTA+AGG | - | chr5.3:2666795-2666814 | None:intergenic | 20.0% |
| !! | TAATAGTAAAAGAACTGTTT+AGG | + | chr5.3:2667053-2667072 | MS.gene024742:intron | 20.0% |
| !! | TGCTAAAATTTCTCTATTAA+AGG | - | chr5.3:2667556-2667575 | None:intergenic | 20.0% |
| !!! | AAAGATTGGTTTCAAATTTT+CGG | + | chr5.3:2666557-2666576 | MS.gene024742:intron | 20.0% |
| !!! | AAGTTCTGAATTTTATTGTT+TGG | + | chr5.3:2666095-2666114 | MS.gene024742:intron | 20.0% |
| !!! | AGATGCATTTTTTGAAAAAA+AGG | + | chr5.3:2667525-2667544 | MS.gene024742:intron | 20.0% |
| !!! | ATATTCTTTTTGTCTTATGA+AGG | + | chr5.3:2667673-2667692 | MS.gene024742:intron | 20.0% |
| ! | AAGACTCCACAATATAAAAT+GGG | - | chr5.3:2666681-2666700 | None:intergenic | 25.0% |
| ! | AATAGTAAATGGTTCTTAAC+TGG | + | chr5.3:2666987-2667006 | MS.gene024742:intron | 25.0% |
| ! | AATTGGGGTAAAATAGTAAA+TGG | + | chr5.3:2666976-2666995 | MS.gene024742:intron | 25.0% |
| ! | ATACAAACATAATCAACAAG+AGG | - | chr5.3:2665643-2665662 | None:intergenic | 25.0% |
| ! | ATACTCTCTTATGTAGAAAT+TGG | - | chr5.3:2667251-2667270 | None:intergenic | 25.0% |
| ! | CATCCTAAAAATAGTATTCT+CGG | - | chr5.3:2665976-2665995 | None:intergenic | 25.0% |
| ! | CATGGTTGTAATATTATTAC+CGG | - | chr5.3:2666818-2666837 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATCTTCTACTA+AGG | - | chr5.3:2665822-2665841 | None:intergenic | 25.0% |
| ! | GAACAGAAAATAGAAAGAAA+AGG | - | chr5.3:2666873-2666892 | None:intergenic | 25.0% |
| ! | GACATCCAAAAAATTTAGAT+TGG | - | chr5.3:2667594-2667613 | None:intergenic | 25.0% |
| ! | TAACTCACTGAACTTATTTA+TGG | + | chr5.3:2666185-2666204 | MS.gene024742:intron | 25.0% |
| ! | TATTCTTCAAATTTACTGAC+TGG | - | chr5.3:2667020-2667039 | None:intergenic | 25.0% |
| ! | TGTTTAACAAACACAAGAAA+AGG | - | chr5.3:2666144-2666163 | None:intergenic | 25.0% |
| !! | AAGATCAAAGTATAATTTGC+CGG | + | chr5.3:2666796-2666815 | MS.gene024742:CDS | 25.0% |
| !! | ACTTTTTGTAACATACAGAA+AGG | - | chr5.3:2666503-2666522 | None:intergenic | 25.0% |
| !! | TTTCTTTCTATTTTCTGTTC+TGG | + | chr5.3:2666873-2666892 | MS.gene024742:intron | 25.0% |
| !!! | ATCACCCAATCTAAATTTTT+TGG | + | chr5.3:2667586-2667605 | MS.gene024742:intron | 25.0% |
| !!! | CAATTTCTAGTTTTCTTCTA+GGG | - | chr5.3:2667334-2667353 | None:intergenic | 25.0% |
| !!! | TCAATTTCTAGTTTTCTTCT+AGG | - | chr5.3:2667335-2667354 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTTTTCGATAAAC+TGG | + | chr5.3:2666527-2666546 | MS.gene024742:intron | 25.0% |
| AAACTGGCAAATGAAAAGAT+TGG | + | chr5.3:2666543-2666562 | MS.gene024742:intron | 30.0% | |
| AACTGTTTAGGTATGTTAGT+AGG | + | chr5.3:2667065-2667084 | MS.gene024742:intron | 30.0% | |
| AATAACCACTGATGTGAAAT+AGG | - | chr5.3:2666245-2666264 | None:intergenic | 30.0% | |
| ACACAGATGACAACAAAAAT+GGG | - | chr5.3:2667723-2667742 | None:intergenic | 30.0% | |
| ACTGTTTAGGTATGTTAGTA+GGG | + | chr5.3:2667066-2667085 | MS.gene024742:intron | 30.0% | |
| AGATAGATTGATAAGCTCAT+TGG | + | chr5.3:2665875-2665894 | MS.gene024742:intron | 30.0% | |
| ATAACCACTGATGTGAAATA+GGG | - | chr5.3:2666244-2666263 | None:intergenic | 30.0% | |
| CAAGACTCCACAATATAAAA+TGG | - | chr5.3:2666682-2666701 | None:intergenic | 30.0% | |
| CACAATGCATAATATATGCA+AGG | + | chr5.3:2666320-2666339 | MS.gene024742:intron | 30.0% | |
| CTAGGAAAATATTTAGGCAT+AGG | - | chr5.3:2667501-2667520 | None:intergenic | 30.0% | |
| CTGCAACTAGGAAAATATTT+AGG | - | chr5.3:2667507-2667526 | None:intergenic | 30.0% | |
| TCACTGAACTTATTTATGGT+TGG | + | chr5.3:2666189-2666208 | MS.gene024742:intron | 30.0% | |
| TGATGTATATATAAAGGGCA+TGG | + | chr5.3:2666265-2666284 | MS.gene024742:intron | 30.0% | |
| ! | CAGAATTTCTGAATCCTTTT+AGG | + | chr5.3:2667390-2667409 | MS.gene024742:intron | 30.0% |
| ! | GTGTTACCCATTTTATATTG+TGG | + | chr5.3:2666672-2666691 | MS.gene024742:CDS | 30.0% |
| ! | TGAGACTGGTTAATGTAATT+GGG | + | chr5.3:2666960-2666979 | MS.gene024742:intron | 30.0% |
| !! | ACTTTGATCTTAAGGTATTG+CGG | - | chr5.3:2666787-2666806 | None:intergenic | 30.0% |
| !!! | CGAGAATACTATTTTTAGGA+TGG | + | chr5.3:2665974-2665993 | MS.gene024742:intron | 30.0% |
| AAAAGATCTCACTGATCAGT+GGG | - | chr5.3:2666025-2666044 | None:intergenic | 35.0% | |
| ACAGTACATGTTCCTTATTG+TGG | - | chr5.3:2665946-2665965 | None:intergenic | 35.0% | |
| AGATTGATAAGCTCATTGGT+TGG | + | chr5.3:2665879-2665898 | MS.gene024742:intron | 35.0% | |
| AGTAAATGGTTCTTAACTGG+AGG | + | chr5.3:2666990-2667009 | MS.gene024742:intron | 35.0% | |
| ATTTCTCTTGAAAACACTCC+AGG | + | chr5.3:2667451-2667470 | MS.gene024742:CDS | 35.0% | |
| CAAAAAATGCATCTGCAACT+AGG | - | chr5.3:2667519-2667538 | None:intergenic | 35.0% | |
| CACACAGATGACAACAAAAA+TGG | - | chr5.3:2667724-2667743 | None:intergenic | 35.0% | |
| CAGTACATGTTCCTTATTGT+GGG | - | chr5.3:2665945-2665964 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | + | chr5.3:2666327-2666346 | MS.gene024742:intron | 35.0% | |
| CCTAAAAATAGTATTCTCGG+CGG | - | chr5.3:2665973-2665992 | None:intergenic | 35.0% | |
| CTGATAGAGTTAGATAATGC+AGG | + | chr5.3:2667280-2667299 | MS.gene024742:intron | 35.0% | |
| CTTACCTTGAACTACCTAAA+AGG | - | chr5.3:2667407-2667426 | None:intergenic | 35.0% | |
| CTTGACAATAAGGATTAGGA+GGG | + | chr5.3:2666071-2666090 | MS.gene024742:intron | 35.0% | |
| GTAGCAATGGATCAAATCAA+TGG | + | chr5.3:2665540-2665559 | MS.gene024742:CDS | 35.0% | |
| TAAAAGATCTCACTGATCAG+TGG | - | chr5.3:2666026-2666045 | None:intergenic | 35.0% | |
| TAACCACTGATGTGAAATAG+GGG | - | chr5.3:2666243-2666262 | None:intergenic | 35.0% | |
| TCTATAGGAAGTGAAAAGCA+GGG | - | chr5.3:2667107-2667126 | None:intergenic | 35.0% | |
| TTGACAATAAGGATTAGGAG+GGG | + | chr5.3:2666072-2666091 | MS.gene024742:intron | 35.0% | |
| ! | AGTTAGATAATGCAGGTTGA+AGG | + | chr5.3:2667287-2667306 | MS.gene024742:intron | 35.0% |
| ! | CTTACCTTGTTTAATCACCA+AGG | + | chr5.3:2665615-2665634 | MS.gene024742:intron | 35.0% |
| ! | CTTGGTGATTAAACAAGGTA+AGG | - | chr5.3:2665617-2665636 | None:intergenic | 35.0% |
| ! | GAGACTGGTTAATGTAATTG+GGG | + | chr5.3:2666961-2666980 | MS.gene024742:intron | 35.0% |
| ! | GTGAGACTGGTTAATGTAAT+TGG | + | chr5.3:2666959-2666978 | MS.gene024742:intron | 35.0% |
| ! | GTTAGATAATGCAGGTTGAA+GGG | + | chr5.3:2667288-2667307 | MS.gene024742:intron | 35.0% |
| !! | AGTTTTCTTCTAGGGAAAAC+TGG | - | chr5.3:2667326-2667345 | None:intergenic | 35.0% |
| !! | GAATCCTTTTAGGTAGTTCA+AGG | + | chr5.3:2667400-2667419 | MS.gene024742:intron | 35.0% |
| !! | TTTTGACTGCCTTGACAATA+AGG | + | chr5.3:2666061-2666080 | MS.gene024742:intron | 35.0% |
| !!! | ACTCCATGCCCTTTTTTTTT+TGG | - | chr5.3:2666372-2666391 | None:intergenic | 35.0% |
| !!! | ATTTTTAGGATGGATGACAC+TGG | + | chr5.3:2665984-2666003 | MS.gene024742:intron | 35.0% |
| !!! | CTCCATGCCCTTTTTTTTTT+GGG | - | chr5.3:2666371-2666390 | None:intergenic | 35.0% |
| AACCACTGATGTGAAATAGG+GGG | - | chr5.3:2666242-2666261 | None:intergenic | 40.0% | |
| ACGAATGTAGGAGAAAAGTG+AGG | + | chr5.3:2665777-2665796 | MS.gene024742:intron | 40.0% | |
| AGGTAAGTTCACAGACTTTG+AGG | + | chr5.3:2667420-2667439 | MS.gene024742:CDS | 40.0% | |
| ATCCAGGTAAACCCAAAAAC+AGG | - | chr5.3:2666736-2666755 | None:intergenic | 40.0% | |
| ATTCTGCATTCTTCCCAAAG+AGG | - | chr5.3:2666622-2666641 | None:intergenic | 40.0% | |
| CACAAGCATAACACGAAACA+AGG | - | chr5.3:2666760-2666779 | None:intergenic | 40.0% | |
| CACCCAAAAAAAAAAGGGCA+TGG | + | chr5.3:2666366-2666385 | MS.gene024742:intron | 40.0% | |
| CCTCCTAATCCTTATTGTCA+AGG | - | chr5.3:2666073-2666092 | None:intergenic | 40.0% | |
| CCTTGACAATAAGGATTAGG+AGG | + | chr5.3:2666070-2666089 | MS.gene024742:intron | 40.0% | |
| CGAATGTAGGAGAAAAGTGA+GGG | + | chr5.3:2665778-2665797 | MS.gene024742:intron | 40.0% | |
| CTATAGGAAGTGAAAAGCAG+GGG | - | chr5.3:2667106-2667125 | None:intergenic | 40.0% | |
| CTGAATCTGATTGACCCAAT+GGG | - | chr5.3:2665481-2665500 | None:intergenic | 40.0% | |
| CTGCCTTGACAATAAGGATT+AGG | + | chr5.3:2666067-2666086 | MS.gene024742:intron | 40.0% | |
| CTTGTTTCGTGTTATGCTTG+TGG | + | chr5.3:2666758-2666777 | MS.gene024742:CDS | 40.0% | |
| GAATGTAGGAGAAAAGTGAG+GGG | + | chr5.3:2665779-2665798 | MS.gene024742:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+AGG | + | chr5.3:2666326-2666345 | MS.gene024742:intron | 40.0% | |
| GCCACCACCCAAAAAAAAAA+GGG | + | chr5.3:2666361-2666380 | MS.gene024742:intron | 40.0% | |
| GGATCAAATCAATGGTCTTC+TGG | + | chr5.3:2665548-2665567 | MS.gene024742:CDS | 40.0% | |
| GGGAAGAATGCAGAATTTCT+GGG | + | chr5.3:2666626-2666645 | MS.gene024742:CDS | 40.0% | |
| GGTAAGTTCACAGACTTTGA+GGG | + | chr5.3:2667421-2667440 | MS.gene024742:CDS | 40.0% | |
| GTCTATAGGAAGTGAAAAGC+AGG | - | chr5.3:2667108-2667127 | None:intergenic | 40.0% | |
| GTTGGAACCTTATGTTGGAT+GGG | + | chr5.3:2665901-2665920 | MS.gene024742:intron | 40.0% | |
| TAAACCCAAAAACAGGCCAT+CGG | - | chr5.3:2666729-2666748 | None:intergenic | 40.0% | |
| TCTGAATCTGATTGACCCAA+TGG | - | chr5.3:2665482-2665501 | None:intergenic | 40.0% | |
| TGAAGCTACAGATATGAAGC+TGG | + | chr5.3:2667790-2667809 | MS.gene024742:CDS | 40.0% | |
| TGGGAAGAATGCAGAATTTC+TGG | + | chr5.3:2666625-2666644 | MS.gene024742:CDS | 40.0% | |
| TGTTCCTTATTGTGGGTCTA+TGG | - | chr5.3:2665938-2665957 | None:intergenic | 40.0% | |
| TTCACGGTACTCTTGACAAA+TGG | - | chr5.3:2667747-2667766 | None:intergenic | 40.0% | |
| TTTGTCCTTGCTACCTCTTT+GGG | + | chr5.3:2666606-2666625 | MS.gene024742:CDS | 40.0% | |
| ! | AATGCAGAATTTCTGGGTTC+TGG | + | chr5.3:2666632-2666651 | MS.gene024742:CDS | 40.0% |
| ! | ATTAACCGATGGCCTGTTTT+TGG | + | chr5.3:2666721-2666740 | MS.gene024742:CDS | 40.0% |
| ! | CAGTGAGATCTTTTACGAGT+AGG | + | chr5.3:2666031-2666050 | MS.gene024742:intron | 40.0% |
| ! | TGATAAGCTCATTGGTTGGT+TGG | + | chr5.3:2665883-2665902 | MS.gene024742:intron | 40.0% |
| !! | ATAATCAACAAGAGGCACCT+TGG | - | chr5.3:2665635-2665654 | None:intergenic | 40.0% |
| !! | CCGCCGAGAATACTATTTTT+AGG | + | chr5.3:2665970-2665989 | MS.gene024742:intron | 40.0% |
| !! | TGTTGCATTTTGAGTGAGAC+TGG | + | chr5.3:2666946-2666965 | MS.gene024742:intron | 40.0% |
| !! | TTAACCGATGGCCTGTTTTT+GGG | + | chr5.3:2666722-2666741 | MS.gene024742:CDS | 40.0% |
| !!! | CATGCCCTTTTTTTTTTGGG+TGG | - | chr5.3:2666368-2666387 | None:intergenic | 40.0% |
| AGAAAAGTGAGGGGAACTAG+AGG | + | chr5.3:2665788-2665807 | MS.gene024742:intron | 45.0% | |
| ATCTCACTGATCAGTGGGAT+AGG | - | chr5.3:2666020-2666039 | None:intergenic | 45.0% | |
| CAGCTCTTTCGCGTATTTCA+CGG | - | chr5.3:2667763-2667782 | None:intergenic | 45.0% | |
| CTTATGTTGGATGGGAAGAC+CGG | + | chr5.3:2665909-2665928 | MS.gene024742:intron | 45.0% | |
| CTTTGTCCTTGCTACCTCTT+TGG | + | chr5.3:2666605-2666624 | MS.gene024742:CDS | 45.0% | |
| GCTACCATAGACCCACAATA+AGG | + | chr5.3:2665931-2665950 | MS.gene024742:intron | 45.0% | |
| GGCCACCACCCAAAAAAAAA+AGG | + | chr5.3:2666360-2666379 | MS.gene024742:intron | 45.0% | |
| GGTTGGAACCTTATGTTGGA+TGG | + | chr5.3:2665900-2665919 | MS.gene024742:intron | 45.0% | |
| GTGAAATACGCGAAAGAGCT+GGG | + | chr5.3:2667762-2667781 | MS.gene024742:CDS | 45.0% | |
| GTGCTAGATGACACGAATGT+AGG | + | chr5.3:2665765-2665784 | MS.gene024742:intron | 45.0% | |
| TATTGTGGGTCTATGGTAGC+CGG | - | chr5.3:2665931-2665950 | None:intergenic | 45.0% | |
| TGAAATACGCGAAAGAGCTG+GGG | + | chr5.3:2667763-2667782 | MS.gene024742:CDS | 45.0% | |
| TGGAATCTGACTGCATTGTC+TGG | - | chr5.3:2667838-2667857 | None:intergenic | 45.0% | |
| TGGGTTACAAAATCCCCACA+CGG | - | chr5.3:2667704-2667723 | None:intergenic | 45.0% | |
| TTCCCCCTATTTCACATCAG+TGG | + | chr5.3:2666237-2666256 | MS.gene024742:intron | 45.0% | |
| TTCTTCCCAAAGAGGTAGCA+AGG | - | chr5.3:2666614-2666633 | None:intergenic | 45.0% | |
| ! | CAAATTTTCGGCTTCTGTGC+AGG | + | chr5.3:2666569-2666588 | MS.gene024742:intron | 45.0% |
| ! | GGCACCTTGGTGATTAAACA+AGG | - | chr5.3:2665622-2665641 | None:intergenic | 45.0% |
| ! | GGTTGGTTGGAACCTTATGT+TGG | + | chr5.3:2665896-2665915 | MS.gene024742:intron | 45.0% |
| ! | TAACACGAAACAAGGCATCC+AGG | - | chr5.3:2666752-2666771 | None:intergenic | 45.0% |
| ! | TGAAAACACTCCAGGTACTG+TGG | + | chr5.3:2667459-2667478 | MS.gene024742:intron | 45.0% |
| !! | TGCTGCTACTTGCTGTCTAT+AGG | - | chr5.3:2667122-2667141 | None:intergenic | 45.0% |
| !! | TTATGAAGGAAGCACCGTGT+GGG | + | chr5.3:2667687-2667706 | MS.gene024742:intron | 45.0% |
| !!! | GCCCTTTTTTTTTTGGGTGG+TGG | - | chr5.3:2666365-2666384 | None:intergenic | 45.0% |
| !!! | TTTTTTTTGGGTGGTGGCCA+GGG | - | chr5.3:2666359-2666378 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTGGGTGGTGGCC+AGG | - | chr5.3:2666360-2666379 | None:intergenic | 45.0% |
| AGTGTCTCTCCTCTACACCA+TGG | + | chr5.3:2665509-2665528 | MS.gene024742:CDS | 50.0% | |
| CAGGTGGAACATAACCACCT+TGG | - | chr5.3:2665451-2665470 | None:intergenic | 50.0% | |
| CATTGCTACTACCACCACCA+TGG | - | chr5.3:2665529-2665548 | None:intergenic | 50.0% | |
| CCACCTGCTTACATCCCATT+GGG | + | chr5.3:2665464-2665483 | MS.gene024742:CDS | 50.0% | |
| CGGTCTTCCCATCCAACATA+AGG | - | chr5.3:2665911-2665930 | None:intergenic | 50.0% | |
| CGTGAAATACGCGAAAGAGC+TGG | + | chr5.3:2667761-2667780 | MS.gene024742:CDS | 50.0% | |
| CTCATCTCAGATGATGTGCC+AGG | - | chr5.3:2667154-2667173 | None:intergenic | 50.0% | |
| GGCTTCTGTGCAGGTTGTAT+AGG | + | chr5.3:2666578-2666597 | MS.gene024742:intron | 50.0% | |
| GTAGCAGCAACTTTGAGTCC+TGG | + | chr5.3:2667133-2667152 | MS.gene024742:intron | 50.0% | |
| TCCACCTGCTTACATCCCAT+TGG | + | chr5.3:2665463-2665482 | MS.gene024742:CDS | 50.0% | |
| TCTGACTGCATTGTCTGGAC+AGG | - | chr5.3:2667833-2667852 | None:intergenic | 50.0% | |
| TGACCCAATGGGATGTAAGC+AGG | - | chr5.3:2665470-2665489 | None:intergenic | 50.0% | |
| ! | GCCATCGGTTAATAAGCAGC+AGG | - | chr5.3:2666714-2666733 | None:intergenic | 50.0% |
| ! | GCCTGCTGCTTATTAACCGA+TGG | + | chr5.3:2666710-2666729 | MS.gene024742:CDS | 50.0% |
| !! | CATGGTGGTGGTAGTAGCAA+TGG | + | chr5.3:2665527-2665546 | MS.gene024742:CDS | 50.0% |
| !! | CTTATGAAGGAAGCACCGTG+TGG | + | chr5.3:2667686-2667705 | MS.gene024742:intron | 50.0% |
| !! | GAGAAGTGTTCCACAGTACC+TGG | - | chr5.3:2667472-2667491 | None:intergenic | 50.0% |
| !! | TATGAAGGAAGCACCGTGTG+GGG | + | chr5.3:2667688-2667707 | MS.gene024742:intron | 50.0% |
| !!! | GGCCTGTTTTTGGGTTTACC+TGG | + | chr5.3:2666731-2666750 | MS.gene024742:CDS | 50.0% |
| AAGGTCCAGGGTTCAAACCC+TGG | + | chr5.3:2666339-2666358 | MS.gene024742:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr5.3:2666296-2666315 | None:intergenic | 55.0% | |
| CCCAATGGGATGTAAGCAGG+TGG | - | chr5.3:2665467-2665486 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr5.3:2666293-2666312 | MS.gene024742:intron | 55.0% | |
| CTACCACCACCATGGTGTAG+AGG | - | chr5.3:2665521-2665540 | None:intergenic | 55.0% | |
| GACTGCATTGTCTGGACAGG+TGG | - | chr5.3:2667830-2667849 | None:intergenic | 55.0% | |
| GTCTCTCCTCTACACCATGG+TGG | + | chr5.3:2665512-2665531 | MS.gene024742:CDS | 55.0% | |
| TCTCCTCTACACCATGGTGG+TGG | + | chr5.3:2665515-2665534 | MS.gene024742:CDS | 55.0% | |
| ! | CTGGGTTCTGGCACGTTCAT+GGG | + | chr5.3:2666644-2666663 | MS.gene024742:CDS | 55.0% |
| ! | TCTGGGTTCTGGCACGTTCA+TGG | + | chr5.3:2666643-2666662 | MS.gene024742:CDS | 55.0% |
| ! | TGGGTTCTGGCACGTTCATG+GGG | + | chr5.3:2666645-2666664 | MS.gene024742:CDS | 55.0% |
| GGTGGCCAGGGTTTGAACCC+TGG | - | chr5.3:2666347-2666366 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2665440 | 2667865 | 2665440 | ID=MS.gene024742 |
| chr5.3 | mRNA | 2665440 | 2667865 | 2665440 | ID=MS.gene024742.t1;Parent=MS.gene024742 |
| chr5.3 | exon | 2665440 | 2665602 | 2665440 | ID=MS.gene024742.t1.exon1;Parent=MS.gene024742.t1 |
| chr5.3 | CDS | 2665440 | 2665602 | 2665440 | ID=cds.MS.gene024742.t1;Parent=MS.gene024742.t1 |
| chr5.3 | exon | 2666591 | 2666817 | 2666591 | ID=MS.gene024742.t1.exon2;Parent=MS.gene024742.t1 |
| chr5.3 | CDS | 2666591 | 2666817 | 2666591 | ID=cds.MS.gene024742.t1;Parent=MS.gene024742.t1 |
| chr5.3 | exon | 2667412 | 2667472 | 2667412 | ID=MS.gene024742.t1.exon3;Parent=MS.gene024742.t1 |
| chr5.3 | CDS | 2667412 | 2667472 | 2667412 | ID=cds.MS.gene024742.t1;Parent=MS.gene024742.t1 |
| chr5.3 | exon | 2667756 | 2667865 | 2667756 | ID=MS.gene024742.t1.exon4;Parent=MS.gene024742.t1 |
| chr5.3 | CDS | 2667756 | 2667865 | 2667756 | ID=cds.MS.gene024742.t1;Parent=MS.gene024742.t1 |
| Gene Sequence |
| Protein sequence |
