AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025268

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025268.t1 MTR_2g042720 99.625 267 0 1 1 266 1 267 0.0 538
MS.gene025268.t1 MTR_8g023790 67.281 217 71 0 48 264 50 266 4.87e-106 308
MS.gene025268.t1 MTR_3g435460 51.741 201 91 2 64 264 56 250 1.31e-67 210
MS.gene025268.t1 MTR_3g435460 52.128 188 84 2 77 264 8 189 1.08e-62 195
MS.gene025268.t1 MTR_3g101670 42.066 271 143 5 1 265 2 264 1.35e-57 185
MS.gene025268.t1 MTR_5g098785 39.286 280 137 10 5 263 7 274 1.58e-49 164
MS.gene025268.t1 MTR_5g098780 39.576 283 130 11 5 263 7 272 2.00e-49 164
MS.gene025268.t1 MTR_2g008610 45.745 188 69 5 71 236 73 249 1.86e-40 140
MS.gene025268.t1 MTR_6g033320 40.488 205 94 7 64 259 49 234 4.53e-39 136
MS.gene025268.t1 MTR_4g015570 35.000 260 91 7 60 265 53 288 1.38e-38 136
MS.gene025268.t1 MTR_6g011870 36.842 247 118 10 40 265 31 260 5.83e-34 124
MS.gene025268.t1 MTR_5g097280 34.074 270 139 11 3 254 1 249 7.43e-34 124
MS.gene025268.t1 MTR_4g094605 36.290 248 119 11 40 265 31 261 1.95e-33 122
MS.gene025268.t1 MTR_6g011880 36.437 247 119 10 40 265 31 260 1.99e-33 122
MS.gene025268.t1 MTR_6g011890 36.437 247 119 10 40 265 31 260 2.97e-33 122
MS.gene025268.t1 MTR_1g026550 33.725 255 132 7 39 265 84 329 5.11e-33 123
MS.gene025268.t1 MTR_6g060175 35.135 222 113 7 59 264 74 280 7.43e-33 121
MS.gene025268.t1 MTR_6g012080 35.223 247 122 10 40 265 31 260 5.20e-32 119
MS.gene025268.t1 MTR_6g012110 36.283 226 108 9 59 265 52 260 1.62e-31 117
MS.gene025268.t1 MTR_2g081090 35.909 220 97 7 59 254 22 221 1.72e-30 114
MS.gene025268.t1 MTR_2g081090 35.909 220 97 7 59 254 49 248 2.50e-30 114
MS.gene025268.t1 MTR_6g060175 33.333 222 107 8 59 264 74 270 1.31e-27 107
MS.gene025268.t1 MTR_6g043600 35.242 227 119 8 44 265 21 224 4.78e-25 99.8
MS.gene025268.t1 MTR_3g070340 31.381 239 86 7 60 244 56 270 5.81e-24 97.8
MS.gene025268.t1 MTR_2g436960 45.679 81 38 2 186 266 27 101 3.63e-15 70.1
MS.gene025268.t1 MTR_5g098770 44.444 72 39 1 192 263 21 91 1.94e-13 65.1
MS.gene025268.t1 MTR_0003s0060 43.210 81 40 2 186 266 20 94 1.30e-12 62.8
MS.gene025268.t1 MTR_1g026550 37.755 98 52 2 39 127 84 181 4.30e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025268.t1 AT1G19150 75.610 246 59 1 20 265 25 269 3.02e-140 395
MS.gene025268.t1 AT3G61470 68.932 206 64 0 59 264 50 255 1.11e-103 302
MS.gene025268.t1 AT3G47470 50.746 201 93 2 64 264 57 251 2.86e-67 209
MS.gene025268.t1 AT1G45474 44.206 233 121 5 38 265 26 254 5.11e-55 178
MS.gene025268.t1 AT1G45474 44.206 233 121 5 38 265 26 254 5.11e-55 178
MS.gene025268.t1 AT1G61520 43.556 225 100 7 60 263 52 270 1.96e-50 167
MS.gene025268.t1 AT1G61520 43.556 225 100 7 60 263 52 270 1.96e-50 167
MS.gene025268.t1 AT1G61520 42.788 208 92 7 77 263 14 215 5.94e-43 146
MS.gene025268.t1 AT3G54890 42.439 205 90 7 64 259 48 233 7.35e-42 144
MS.gene025268.t1 AT1G15820 37.838 259 125 9 1 236 1 246 2.35e-40 140
MS.gene025268.t1 AT5G28450 63.366 101 37 0 164 264 71 171 6.51e-40 136
MS.gene025268.t1 AT3G08940 32.203 295 119 8 28 265 16 286 1.02e-36 132
MS.gene025268.t1 AT5G01530 33.846 260 94 7 60 265 54 289 3.62e-36 130
MS.gene025268.t1 AT2G05100 33.681 288 138 11 3 265 1 260 4.75e-35 127
MS.gene025268.t1 AT2G05070 33.681 288 138 11 3 265 1 260 7.74e-35 126
MS.gene025268.t1 AT2G34430 35.772 246 122 9 40 265 32 261 1.23e-33 123
MS.gene025268.t1 AT1G76570 34.545 275 132 11 27 265 65 327 3.01e-33 124
MS.gene025268.t1 AT3G27690 36.916 214 101 8 59 254 53 250 3.05e-33 122
MS.gene025268.t1 AT4G10340 38.356 219 104 8 59 261 65 268 3.19e-33 122
MS.gene025268.t1 AT3G27690 36.916 214 101 8 59 254 85 282 3.55e-33 122
MS.gene025268.t1 AT2G34420 36.792 212 103 6 70 265 64 260 7.33e-33 121
MS.gene025268.t1 AT1G29920 37.327 217 104 7 65 265 62 262 1.13e-32 120
MS.gene025268.t1 AT1G29910 37.327 217 104 7 65 265 62 262 1.13e-32 120
MS.gene025268.t1 AT1G29930 37.327 217 104 7 65 265 62 262 1.20e-32 120
MS.gene025268.t1 AT5G54270 36.816 201 95 6 71 254 64 249 5.83e-30 113
MS.gene025268.t1 AT2G40100 32.645 242 84 8 60 247 55 271 1.03e-27 107
MS.gene025268.t1 AT3G54890 36.757 185 89 7 64 239 48 213 3.47e-27 105
MS.gene025268.t1 AT2G05100 32.308 260 123 11 3 237 1 232 2.07e-26 105
MS.gene025268.t1 AT3G54890 34.804 204 73 7 64 259 48 199 1.22e-22 92.8
MS.gene025268.t1 AT3G54890 45.455 110 51 2 64 164 48 157 2.03e-20 85.9
MS.gene025268.t1 AT3G08940 28.241 216 89 5 28 183 16 225 5.09e-14 70.1
MS.gene025268.t1 AT2G40100 34.400 125 33 2 60 141 55 173 5.26e-14 68.9

Find 77 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCCTTCCTGGTGATTT+TGG 0.118612 2.2:+45023603 MS.gene025268:intron
CATTGTTCAACTAGCCTTAA+TGG 0.165083 2.2:+45024064 MS.gene025268:CDS
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2.2:+45023594 MS.gene025268:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2.2:+45024956 MS.gene025268:intron
CAGATCCAGAGTTGCTAAAA+TGG 0.292408 2.2:+45023886 MS.gene025268:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2.2:-45023244 None:intergenic
ACCTTCAACCCAACCCATTA+AGG 0.308036 2.2:-45024078 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2.2:-45023208 None:intergenic
TTAGTCCTCAAAACCATTAC+AGG 0.332116 2.2:-45024242 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2.2:-45024170 None:intergenic
GCCTTAATGGGTTGGGTTGA+AGG 0.347691 2.2:+45024077 MS.gene025268:CDS
ATTGTTCAACTAGCCTTAAT+GGG 0.360647 2.2:+45024065 MS.gene025268:CDS
GATGGCTCATCTTGCTGATC+CGG 0.383167 2.2:+45024355 MS.gene025268:CDS
TTGAGCCTAAGTTACCAAAT+AGG 0.386800 2.2:+45024141 MS.gene025268:CDS
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2.2:+45023939 MS.gene025268:CDS
TCAACTAGCCTTAATGGGTT+GGG 0.388339 2.2:+45024070 MS.gene025268:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2.2:+45024257 MS.gene025268:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2.2:+45023930 MS.gene025268:CDS
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2.2:+45024957 MS.gene025268:intron
TTTGGCCTATTTGGTAACTT+AGG 0.409786 2.2:-45024146 None:intergenic
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2.2:+45023230 MS.gene025268:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2.2:+45023238 MS.gene025268:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2.2:+45024337 MS.gene025268:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2.2:-45022965 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2.2:-45024341 None:intergenic
ATGCAGAGAAATATGTCAAA+AGG 0.430272 2.2:+45023075 MS.gene025268:intron
GAACAACATCAACAACTTCA+TGG 0.441276 2.2:+45023110 MS.gene025268:CDS
ACTACCCGGGTTAACGATAT+CGG 0.444821 2.2:-45024111 None:intergenic
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2.2:+45024183 MS.gene025268:CDS
CTCAAAACCATTACAGGCTC+AGG 0.461055 2.2:-45024236 None:intergenic
TTCAACTAGCCTTAATGGGT+TGG 0.465567 2.2:+45024069 MS.gene025268:CDS
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2.2:+45024356 MS.gene025268:CDS
GTTGGGTTGAAGGTCGAAGA+TGG 0.481490 2.2:+45024087 MS.gene025268:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2.2:-45023229 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2.2:+45023242 MS.gene025268:CDS
TGAACAATGAAAAGTGTTGT+TGG 0.488497 2.2:-45024050 None:intergenic
GGATCAAACCATAGCCCACC+AGG 0.490806 2.2:-45024191 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2.2:+45024209 MS.gene025268:CDS
AGGTTCACCTGAGCCTGTAA+TGG 0.492772 2.2:+45024229 MS.gene025268:CDS
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2.2:+45023211 MS.gene025268:CDS
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2.2:+45023194 MS.gene025268:CDS
GAACAATGAAAAGTGTTGTT+GGG 0.509421 2.2:-45024049 None:intergenic
CCACCAGGGTAACCAACATC+TGG 0.511783 2.2:-45024176 None:intergenic
TTGGGTTGAAGGTCGAAGAT+GGG 0.512458 2.2:+45024088 MS.gene025268:CDS
ACAATTAGAAATGCAAAGAA+AGG 0.515819 2.2:+45023157 MS.gene025268:CDS
AGAACTAATGCATGCAAGAT+GGG 0.516375 2.2:+45023920 MS.gene025268:CDS
CAGAACTAATGCATGCAAGA+TGG 0.524297 2.2:+45023919 MS.gene025268:CDS
AAGTTGTTGATGTTGTTCCT+TGG 0.527869 2.2:-45023105 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2.2:+45024258 MS.gene025268:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2.2:-45023199 None:intergenic
GGCTCAATATCAACACTACC+CGG 0.541273 2.2:-45024125 None:intergenic
AACTTCTCATGGTACAATGC+AGG 0.549392 2.2:+45024005 MS.gene025268:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2.2:+45024202 MS.gene025268:CDS
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2.2:+45024314 MS.gene025268:CDS
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2.2:-45024212 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2.2:+45023203 MS.gene025268:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2.2:+45024173 MS.gene025268:CDS
TATGGTTTGATCCTATGCAG+TGG 0.581606 2.2:+45024201 MS.gene025268:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2.2:-45024374 None:intergenic
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2.2:+45024177 MS.gene025268:CDS
ATGGGCCGATATCGTTAACC+CGG 0.593103 2.2:+45024106 MS.gene025268:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2.2:+45024164 MS.gene025268:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2.2:-45022974 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2.2:-45022971 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2.2:+45024176 MS.gene025268:CDS
GGGTCAAAACCAAAATCACC+AGG 0.636273 2.2:-45023612 None:intergenic
AACCACAATGGCCTATCTGG+AGG 0.659675 2.2:-45023205 None:intergenic
AAGACATACCTAATCCAAGA+GGG 0.664832 2.2:-45023632 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2.2:-45023608 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2.2:-45023228 None:intergenic
GAACTACCAGGGAACCACAA+TGG 0.679112 2.2:-45023217 None:intergenic
TGGGCCGATATCGTTAACCC+GGG 0.686507 2.2:+45024107 MS.gene025268:CDS
GCTCAATATCAACACTACCC+GGG 0.692368 2.2:-45024124 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2.2:-45023241 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2.2:-45024190 None:intergenic
TAAGACATACCTAATCCAAG+AGG 0.724614 2.2:-45023633 None:intergenic
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2.2:+45024203 MS.gene025268:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCAAAATATAAAATAAAA+TGG - chr2.2:45023510-45023529 None:intergenic 10.0%
!!! ATTTTTGTTAATTTTCTTAA+TGG + chr2.2:45023268-45023287 MS.gene025268:intron 10.0%
!!! TTCCATTTTATTTTATATTT+TGG + chr2.2:45023505-45023524 MS.gene025268:intron 10.0%
!! AAAAAAAAAAAACATCATAG+TGG - chr2.2:45023452-45023471 None:intergenic 15.0%
!! AAAAAAAAAAACATCATAGT+GGG - chr2.2:45023451-45023470 None:intergenic 15.0%
!! AATAATAAGTTAAAAAGAGT+TGG - chr2.2:45023007-45023026 None:intergenic 15.0%
!!! AATTTTCTTAATGGAAAATT+TGG + chr2.2:45023277-45023296 MS.gene025268:intron 15.0%
!! TTATAGGTTAATTAGTTACT+TGG - chr2.2:45023849-45023868 None:intergenic 20.0%
!!! GTTTTTACTTTCGTTTTATT+TGG + chr2.2:45023341-45023360 MS.gene025268:intron 20.0%
!!! TTTTTTGAGCAAAATAATCT+AGG + chr2.2:45024664-45024683 MS.gene025268:intron 20.0%
! AAAATTCATGTAGCTTCTAT+TGG - chr2.2:45024755-45024774 None:intergenic 25.0%
! ACAATTAGAAATGCAAAGAA+AGG + chr2.2:45023157-45023176 MS.gene025268:CDS 25.0%
! ACCTATAAATTAATCCTTTC+AGG + chr2.2:45023861-45023880 MS.gene025268:intron 25.0%
! ATTTGATCACATCTAATTAC+TGG + chr2.2:45023776-45023795 MS.gene025268:intron 25.0%
! CAAATGGTAAAGAGTAAATA+TGG + chr2.2:45023414-45023433 MS.gene025268:intron 25.0%
! CATATTTACTCTTTACCATT+TGG - chr2.2:45023416-45023435 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG + chr2.2:45023972-45023991 MS.gene025268:CDS 25.0%
! CCTATAAATTAATCCTTTCA+GGG + chr2.2:45023862-45023881 MS.gene025268:intron 25.0%
! GAAGTTGTTTAATGATGATA+AGG - chr2.2:45023552-45023571 None:intergenic 25.0%
! GTTATATATTGGAGTTTAGT+TGG - chr2.2:45024545-45024564 None:intergenic 25.0%
! GTTTAATGATGATAAGGATT+TGG - chr2.2:45023546-45023565 None:intergenic 25.0%
! TAAACTCCAATATATAACAG+AGG + chr2.2:45024547-45024566 MS.gene025268:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG + chr2.2:45024337-45024356 MS.gene025268:CDS 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG + chr2.2:45024769-45024788 MS.gene025268:intron 25.0%
!!! ACAAATCAATGTTTTGATCT+CGG + chr2.2:45024886-45024905 MS.gene025268:intron 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG - chr2.2:45023975-45023994 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG + chr2.2:45024763-45024782 MS.gene025268:intron 25.0%
!!! TTTTAACTCATTATATGACG+TGG + chr2.2:45024484-45024503 MS.gene025268:intron 25.0%
AAACAATATGCACACTAACT+AGG + chr2.2:45024843-45024862 MS.gene025268:intron 30.0%
ATGCAGAGAAATATGTCAAA+AGG + chr2.2:45023075-45023094 MS.gene025268:intron 30.0%
ATGTTCACTTTATGATGTGT+TGG + chr2.2:45023676-45023695 MS.gene025268:intron 30.0%
CATCATTAAATGCATGTGTA+AGG - chr2.2:45024463-45024482 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG - chr2.2:45023865-45023884 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG + chr2.2:45023994-45024013 MS.gene025268:CDS 30.0%
TAGGTTAATTAGTTACTTGG+TGG - chr2.2:45023846-45023865 None:intergenic 30.0%
TGAGCCATCAAATTATCAAT+AGG - chr2.2:45024344-45024363 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG + chr2.2:45022980-45022999 MS.gene025268:CDS 30.0%
!! AAAACTTGATAATGAAGTGG+AGG - chr2.2:45022974-45022993 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG + chr2.2:45024065-45024084 MS.gene025268:CDS 30.0%
!! GAACAATGAAAAGTGTTGTT+GGG - chr2.2:45024052-45024071 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG + chr2.2:45024768-45024787 MS.gene025268:intron 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG + chr2.2:45024312-45024331 MS.gene025268:CDS 30.0%
!! TGAACAATGAAAAGTGTTGT+TGG - chr2.2:45024053-45024072 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG - chr2.2:45022977-45022996 None:intergenic 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG + chr2.2:45024311-45024330 MS.gene025268:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG + chr2.2:45024313-45024332 MS.gene025268:CDS 30.0%
AAATCAAACCCTGAACCAAA+TGG + chr2.2:45023398-45023417 MS.gene025268:intron 35.0%
AAGACATACCTAATCCAAGA+GGG - chr2.2:45023635-45023654 None:intergenic 35.0%
AAGTTGTTGATGTTGTTCCT+TGG - chr2.2:45023108-45023127 None:intergenic 35.0%
AATTACTGGTGACTACTTGT+CGG + chr2.2:45023790-45023809 MS.gene025268:intron 35.0%
AGAACTAATGCATGCAAGAT+GGG + chr2.2:45023920-45023939 MS.gene025268:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG + chr2.2:45024257-45024276 MS.gene025268:CDS 35.0%
CATGTAGCTTCTATTGGAAA+TGG - chr2.2:45024749-45024768 None:intergenic 35.0%
GAACAACATCAACAACTTCA+TGG + chr2.2:45023110-45023129 MS.gene025268:CDS 35.0%
GGACTAAGGAGATTAAGAAT+GGG + chr2.2:45024258-45024277 MS.gene025268:CDS 35.0%
GGATCACCTCTGTTATATAT+TGG - chr2.2:45024556-45024575 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG - chr2.2:45022997-45023016 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG - chr2.2:45023636-45023655 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG - chr2.2:45024245-45024264 None:intergenic 35.0%
TTGAGCCTAAGTTACCAAAT+AGG + chr2.2:45024141-45024160 MS.gene025268:CDS 35.0%
TTTCAAGCTGTTTATGTTGG+GGG + chr2.2:45024314-45024333 MS.gene025268:CDS 35.0%
! ACTCTTTACCATTTGGTTCA+GGG - chr2.2:45023409-45023428 None:intergenic 35.0%
! GCTTCTATTGGAAATGGATT+AGG - chr2.2:45024743-45024762 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG - chr2.2:45023410-45023429 None:intergenic 35.0%
! TGATAATGAAGTGGAGGAAA+TGG - chr2.2:45022968-45022987 None:intergenic 35.0%
! TGTCAAAAGGTTTTACACCA+AGG + chr2.2:45023088-45023107 MS.gene025268:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+AGG - chr2.2:45024149-45024168 None:intergenic 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG + chr2.2:45024064-45024083 MS.gene025268:CDS 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG + chr2.2:45024285-45024304 MS.gene025268:CDS 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG + chr2.2:45024244-45024263 MS.gene025268:CDS 35.0%
AACTTCTCATGGTACAATGC+AGG + chr2.2:45024005-45024024 MS.gene025268:CDS 40.0%
ATGACGTGGTAACACATCAT+TGG + chr2.2:45024498-45024517 MS.gene025268:intron 40.0%
ATGGTTTGATCCTATGCAGT+GGG + chr2.2:45024202-45024221 MS.gene025268:CDS 40.0%
CAAAACCAAAATCACCAGGA+AGG - chr2.2:45023611-45023630 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG + chr2.2:45023919-45023938 MS.gene025268:CDS 40.0%
CAGATCCAGAGTTGCTAAAA+TGG + chr2.2:45023886-45023905 MS.gene025268:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG + chr2.2:45023715-45023734 MS.gene025268:intron 40.0%
GAGAAAATGTTGACATGACC+CGG - chr2.2:45024377-45024396 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG + chr2.2:45024201-45024220 MS.gene025268:CDS 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG + chr2.2:45024943-45024962 MS.gene025268:intron 40.0%
! GGGTCATGTCAACATTTTCT+CGG + chr2.2:45024376-45024395 MS.gene025268:CDS 40.0%
! TGGTGGTGAATCAATAGACA+CGG - chr2.2:45023829-45023848 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG - chr2.2:45024879-45024898 None:intergenic 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG - chr2.2:45024878-45024897 None:intergenic 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG + chr2.2:45024284-45024303 MS.gene025268:CDS 40.0%
!! GCTAACCATTTTAGCAACTC+TGG - chr2.2:45023894-45023913 None:intergenic 40.0%
!! TCAACTAGCCTTAATGGGTT+GGG + chr2.2:45024070-45024089 MS.gene025268:CDS 40.0%
!! TCATGCCTTACTGTTTTGAG+CGG + chr2.2:45024589-45024608 MS.gene025268:intron 40.0%
!! TTCAACTAGCCTTAATGGGT+TGG + chr2.2:45024069-45024088 MS.gene025268:CDS 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG + chr2.2:45023618-45023637 MS.gene025268:CDS 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG - chr2.2:45024172-45024191 None:intergenic 40.0%
ACCTTCAACCCAACCCATTA+AGG - chr2.2:45024081-45024100 None:intergenic 45.0%
ACTACCCGGGTTAACGATAT+CGG - chr2.2:45024114-45024133 None:intergenic 45.0%
AGGCATGACACATGAGTACA+TGG - chr2.2:45024577-45024596 None:intergenic 45.0%
ATTCAGGAGGTGAACTACCA+GGG - chr2.2:45023231-45023250 None:intergenic 45.0%
CATGCAAGATGGGCAATGTT+AGG + chr2.2:45023930-45023949 MS.gene025268:CDS 45.0%
CCAAACCCAAAACCAGATGT+TGG + chr2.2:45024164-45024183 MS.gene025268:CDS 45.0%
CTCAAAACCATTACAGGCTC+AGG - chr2.2:45024239-45024258 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG - chr2.2:45024127-45024146 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG - chr2.2:45024128-45024147 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG - chr2.2:45023615-45023634 None:intergenic 45.0%
TCTCTCCGCTCAAAACAGTA+AGG - chr2.2:45024597-45024616 None:intergenic 45.0%
TGGTTTGATCCTATGCAGTG+GGG + chr2.2:45024203-45024222 MS.gene025268:CDS 45.0%
TTGTGCAGGCTTTCACTTCA+GGG + chr2.2:45024957-45024976 MS.gene025268:intron 45.0%
! AAACCAGATGTTGGTTACCC+TGG + chr2.2:45024173-45024192 MS.gene025268:CDS 45.0%
! ACATCATAGTGGGACACAAG+TGG - chr2.2:45023441-45023460 None:intergenic 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG + chr2.2:45024237-45024256 MS.gene025268:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG - chr2.2:45024173-45024192 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG + chr2.2:45023624-45023643 MS.gene025268:CDS 45.0%
!! TGATTTCTAGTCAGTGCGTG+CGG - chr2.2:45023384-45023403 None:intergenic 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG + chr2.2:45023939-45023958 MS.gene025268:CDS 45.0%
!! TTGGGTTGAAGGTCGAAGAT+GGG + chr2.2:45024088-45024107 MS.gene025268:CDS 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG - chr2.2:45024167-45024186 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG - chr2.2:45024158-45024177 None:intergenic 45.0%
AACCACAATGGCCTATCTGG+AGG - chr2.2:45023208-45023227 None:intergenic 50.0%
AATGGCCTATCTGGAGGAAG+TGG - chr2.2:45023202-45023221 None:intergenic 50.0%
ACTCTGGATCTGACCCTGAA+AGG - chr2.2:45023878-45023897 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG + chr2.2:45024229-45024248 MS.gene025268:CDS 50.0%
ATCACCAGGAAGGCTGCAAT+TGG - chr2.2:45023601-45023620 None:intergenic 50.0%
ATGGCTCATCTTGCTGATCC+GGG + chr2.2:45024356-45024375 MS.gene025268:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG + chr2.2:45024106-45024125 MS.gene025268:CDS 50.0%
CATTCAGGAGGTGAACTACC+AGG - chr2.2:45023232-45023251 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG + chr2.2:45023230-45023249 MS.gene025268:CDS 50.0%
CTTGTGCAGGCTTTCACTTC+AGG + chr2.2:45024956-45024975 MS.gene025268:intron 50.0%
GAACTACCAGGGAACCACAA+TGG - chr2.2:45023220-45023239 None:intergenic 50.0%
GATCAAACCATAGCCCACCA+GGG - chr2.2:45024193-45024212 None:intergenic 50.0%
GATGGCTCATCTTGCTGATC+CGG + chr2.2:45024355-45024374 MS.gene025268:CDS 50.0%
GTGAACCACTTCCTCCAGAT+AGG + chr2.2:45023194-45023213 MS.gene025268:CDS 50.0%
GTGACTACTTGTCGGTACCA+CGG + chr2.2:45023798-45023817 MS.gene025268:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG - chr2.2:45023247-45023266 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG - chr2.2:45023600-45023619 None:intergenic 50.0%
TCACCTCCTGAATGGCTTGA+TGG + chr2.2:45023238-45023257 MS.gene025268:CDS 50.0%
TTCCTCCAGATAGGCCATTG+TGG + chr2.2:45023203-45023222 MS.gene025268:CDS 50.0%
! CAGATGTTGGTTACCCTGGT+GGG + chr2.2:45024177-45024196 MS.gene025268:CDS 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG + chr2.2:45023603-45023622 MS.gene025268:intron 50.0%
!! GCCTTAATGGGTTGGGTTGA+AGG + chr2.2:45024077-45024096 MS.gene025268:CDS 50.0%
!! GTTGGGTTGAAGGTCGAAGA+TGG + chr2.2:45024087-45024106 MS.gene025268:CDS 50.0%
!! TTGATTTGTCGCGTTGTGGG+AGG - chr2.2:45024875-45024894 None:intergenic 50.0%
CCACCAGGGTAACCAACATC+TGG - chr2.2:45024179-45024198 None:intergenic 55.0%
CTGCCATCAAGCCATTCAGG+AGG - chr2.2:45023244-45023263 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG + chr2.2:45023594-45023613 MS.gene025268:intron 55.0%
GAACCTCTTCCCCACTGCAT+AGG - chr2.2:45024215-45024234 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG + chr2.2:45023211-45023230 MS.gene025268:CDS 55.0%
GATCCTATGCAGTGGGGAAG+AGG + chr2.2:45024209-45024228 MS.gene025268:CDS 55.0%
GGATCAAACCATAGCCCACC+AGG - chr2.2:45024194-45024213 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG - chr2.2:45023211-45023230 None:intergenic 55.0%
TGGGCCGATATCGTTAACCC+GGG + chr2.2:45024107-45024126 MS.gene025268:CDS 55.0%
! CCAGATGTTGGTTACCCTGG+TGG + chr2.2:45024176-45024195 MS.gene025268:CDS 55.0%
! CTCCTGAATGGCTTGATGGC+AGG + chr2.2:45023242-45023261 MS.gene025268:CDS 55.0%
! GTGCGTGCGGAGGATACTTT+TGG - chr2.2:45023371-45023390 None:intergenic 55.0%
! TTTCTAGTCAGTGCGTGCGG+AGG - chr2.2:45023381-45023400 None:intergenic 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG + chr2.2:45024183-45024202 MS.gene025268:CDS 55.0%
CAATAGACACGGCACGACCG+TGG - chr2.2:45023818-45023837 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 45022955 45024982 45022955 ID=MS.gene025268
chr2.2 mRNA 45022955 45024982 45022955 ID=MS.gene025268.t1;Parent=MS.gene025268
chr2.2 exon 45022955 45023001 45022955 ID=MS.gene025268.t1.exon1;Parent=MS.gene025268.t1
chr2.2 CDS 45022955 45023001 45022955 ID=cds.MS.gene025268.t1;Parent=MS.gene025268.t1
chr2.2 exon 45023081 45023263 45023081 ID=MS.gene025268.t1.exon2;Parent=MS.gene025268.t1
chr2.2 CDS 45023081 45023263 45023081 ID=cds.MS.gene025268.t1;Parent=MS.gene025268.t1
chr2.2 exon 45023608 45023645 45023608 ID=MS.gene025268.t1.exon3;Parent=MS.gene025268.t1
chr2.2 CDS 45023608 45023645 45023608 ID=cds.MS.gene025268.t1;Parent=MS.gene025268.t1
chr2.2 exon 45023883 45024397 45023883 ID=MS.gene025268.t1.exon4;Parent=MS.gene025268.t1
chr2.2 CDS 45023883 45024397 45023883 ID=cds.MS.gene025268.t1;Parent=MS.gene025268.t1
chr2.2 exon 45024965 45024982 45024965 ID=MS.gene025268.t1.exon5;Parent=MS.gene025268.t1
chr2.2 CDS 45024965 45024982 45024965 ID=cds.MS.gene025268.t1;Parent=MS.gene025268.t1
Gene Sequence

>MS.gene025268

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGGTCCAACTCTTTTTAACTTATTATTATTATGCTCATTGATTAATTCTTAAACTATATAGTTTTTTGCATTTTGATGCAGAGAAATATGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACTTCATGGTCAAGCAGCAGAAGAAGAAGACTTACAATTAGAAATGCAAAGAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGGTAAATTTTTGTTAATTTTCTTAATGGAAAATTTGGATCAGTTAGATTTAATTTTTGTTTTTTTAAAAAAAAAAATTGTTTTTACTTTCGTTTTATTTGGTAAACCAAAAGTATCCTCCGCACGCACTGACTAGAAATCAAACCCTGAACCAAATGGTAAAGAGTAAATATGGACCACTTGTGTCCCACTATGATGTTTTTTTTTTTTTACTTTAATTTAAAAAAATATTTTTTTATTTATTTCCATTTTATTTTATATTTTGGAAGAAAAAAAAAATGCCAAATCCTTATCATCATTAAACAACTTCAGCAGCATAATCTTTTGATCTTCTTCCCAATTGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTATGTCTTACTTTCAATATGAATAACAAAATGTTCACTTTATGATGTGTTGGTCTATTTAGCTTGATACTTCATATTGAAGACGTGTCTGGTGTCTGATACATATCGATGTCGTACACGACACTGTAACATTTGATCACATCTAATTACTGGTGACTACTTGTCGGTACCACGGTCGTGCCGTGTCTATTGATTCACCACCAAGTAACTAATTAACCTATAAATTAATCCTTTCAGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTTGCAGACCCAACAACACTTTTCATTGTTCAACTAGCCTTAATGGGTTGGGTTGAAGGTCGAAGATGGGCCGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCTAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGTAATTAATAATCTTTTGTTACTTACTTCATTTCTACTATATACGTCGTTAGTGTAAAATAGCCTTACACATGCATTTAATGATGTTTTTAACTCATTATATGACGTGGTAACACATCATTGGATGCATGTGTAATTTTTTACACCAACTAAACTCCAATATATAACAGAGGTGATCCATGTACTCATGTGTCATGCCTTACTGTTTTGAGCGGAGAGATGCGCTGAATTGAGATTGTGTATGTCTCTCTAGTATATTTTTCTAAGTTTTTTGAGCAAAATAATCTAGGTTTTAAAGTGTGTGAAAAATAGATATGTAAATGTTGATATTGTTGTGACTGCACCTAATCCATTTCCAATAGAAGCTACATGAATTTTTAAGCGTTAGGTTAGGGTGAGTGTTACATGTACAAGTCTAACTATTATATATTGATTACTACAAAATAAAACAATATGCACACTAACTAGGAGCTAGCCTCCCACAACGCGACAAATCAATGTTTTGATCTCGGCTGAGACGTGTTAGAAGTAATGAGAATGATTGTGACAGAAGTTTTTGCTTGTGCAGGCTTTCACTTCAGGGTAG
Protein sequence

>MS.gene025268.t1

MALAISSTSLSSFPNREICQKVLHQGTTSTTSWSSSRRRRLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG