Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03545.t1 | XP_013459282.1 | 98.8 | 253 | 3 | 0 | 1 | 253 | 1 | 253 | 3.80E-146 | 527.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03545.t1 | Q9SQL2 | 94.4 | 251 | 14 | 0 | 1 | 251 | 1 | 251 | 1.6e-140 | 500.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03545.t1 | B7FJY9 | 98.8 | 253 | 3 | 0 | 1 | 253 | 1 | 253 | 2.8e-146 | 527.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36470 | MS.gene03545 | PPI |
| MS.gene20443 | MS.gene03545 | PPI |
| MS.gene031016 | MS.gene03545 | PPI |
| MS.gene031030 | MS.gene03545 | PPI |
| MS.gene028321 | MS.gene03545 | PPI |
| MS.gene64487 | MS.gene03545 | PPI |
| MS.gene023132 | MS.gene03545 | PPI |
| MS.gene20445 | MS.gene03545 | PPI |
| MS.gene031028 | MS.gene03545 | PPI |
| MS.gene025268 | MS.gene03545 | PPI |
| MS.gene03545 | MS.gene35137 | PPI |
| MS.gene20444 | MS.gene03545 | PPI |
| MS.gene03545 | MS.gene057416 | PPI |
| MS.gene03545 | MS.gene037144 | PPI |
| MS.gene20446 | MS.gene03545 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03545.t1 | MTR_3g435460 | 98.814 | 253 | 3 | 0 | 1 | 253 | 1 | 253 | 0.0 | 516 |
| MS.gene03545.t1 | MTR_3g435460 | 98.919 | 185 | 2 | 0 | 69 | 253 | 8 | 192 | 3.00e-135 | 379 |
| MS.gene03545.t1 | MTR_8g023790 | 49.590 | 244 | 113 | 5 | 15 | 250 | 25 | 266 | 1.07e-74 | 228 |
| MS.gene03545.t1 | MTR_2g042720 | 51.724 | 203 | 92 | 2 | 56 | 252 | 65 | 267 | 5.70e-68 | 211 |
| MS.gene03545.t1 | MTR_3g101670 | 50.725 | 207 | 94 | 4 | 52 | 250 | 57 | 263 | 3.64e-65 | 204 |
| MS.gene03545.t1 | MTR_2g436960 | 93.103 | 87 | 6 | 0 | 167 | 253 | 16 | 102 | 1.10e-54 | 171 |
| MS.gene03545.t1 | MTR_0003s0060 | 87.356 | 87 | 11 | 0 | 167 | 253 | 9 | 95 | 2.22e-50 | 160 |
| MS.gene03545.t1 | MTR_5g098780 | 42.279 | 272 | 111 | 11 | 18 | 249 | 7 | 272 | 3.34e-48 | 160 |
| MS.gene03545.t1 | MTR_5g098785 | 40.727 | 275 | 127 | 10 | 2 | 249 | 9 | 274 | 1.05e-47 | 159 |
| MS.gene03545.t1 | MTR_6g033320 | 39.381 | 226 | 106 | 7 | 38 | 249 | 30 | 238 | 6.69e-43 | 146 |
| MS.gene03545.t1 | MTR_6g074140 | 70.115 | 87 | 8 | 1 | 167 | 253 | 36 | 104 | 7.04e-34 | 118 |
| MS.gene03545.t1 | MTR_6g060175 | 38.614 | 202 | 100 | 5 | 63 | 251 | 91 | 281 | 1.10e-32 | 120 |
| MS.gene03545.t1 | MTR_1g026550 | 37.736 | 212 | 100 | 8 | 63 | 250 | 125 | 328 | 2.32e-32 | 121 |
| MS.gene03545.t1 | MTR_2g008610 | 37.619 | 210 | 95 | 7 | 53 | 233 | 57 | 259 | 6.88e-31 | 115 |
| MS.gene03545.t1 | MTR_6g011870 | 36.041 | 197 | 102 | 5 | 62 | 243 | 65 | 252 | 2.45e-30 | 114 |
| MS.gene03545.t1 | MTR_6g011880 | 36.041 | 197 | 102 | 5 | 62 | 243 | 65 | 252 | 2.47e-30 | 114 |
| MS.gene03545.t1 | MTR_6g012080 | 35.533 | 197 | 103 | 5 | 62 | 243 | 65 | 252 | 3.05e-30 | 114 |
| MS.gene03545.t1 | MTR_4g015570 | 33.071 | 254 | 88 | 6 | 56 | 250 | 57 | 287 | 3.22e-30 | 114 |
| MS.gene03545.t1 | MTR_6g011890 | 36.041 | 197 | 102 | 5 | 62 | 243 | 65 | 252 | 3.54e-30 | 114 |
| MS.gene03545.t1 | MTR_4g094605 | 35.714 | 196 | 102 | 5 | 63 | 243 | 67 | 253 | 8.48e-30 | 112 |
| MS.gene03545.t1 | MTR_6g012110 | 35.533 | 197 | 103 | 5 | 62 | 243 | 65 | 252 | 1.04e-29 | 112 |
| MS.gene03545.t1 | MTR_6g060175 | 37.129 | 202 | 93 | 6 | 63 | 251 | 91 | 271 | 5.22e-28 | 108 |
| MS.gene03545.t1 | MTR_5g097280 | 34.826 | 201 | 97 | 6 | 63 | 243 | 66 | 252 | 1.24e-27 | 107 |
| MS.gene03545.t1 | MTR_2g081090 | 37.500 | 200 | 99 | 6 | 62 | 244 | 35 | 225 | 4.51e-27 | 105 |
| MS.gene03545.t1 | MTR_2g081090 | 37.500 | 200 | 99 | 6 | 62 | 244 | 62 | 252 | 6.63e-27 | 105 |
| MS.gene03545.t1 | MTR_6g043600 | 36.170 | 188 | 94 | 5 | 62 | 243 | 49 | 216 | 2.88e-23 | 94.7 |
| MS.gene03545.t1 | MTR_3g070340 | 33.476 | 233 | 73 | 8 | 56 | 229 | 60 | 269 | 4.92e-23 | 95.1 |
| MS.gene03545.t1 | MTR_5g098770 | 51.316 | 76 | 32 | 2 | 180 | 250 | 17 | 92 | 6.99e-16 | 71.2 |
| MS.gene03545.t1 | MTR_0003s0070 | 93.939 | 33 | 2 | 0 | 221 | 253 | 53 | 85 | 2.47e-15 | 69.7 |
| MS.gene03545.t1 | MTR_1g026550 | 44.286 | 70 | 37 | 1 | 63 | 130 | 125 | 194 | 9.18e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03545.t1 | AT3G47470 | 88.845 | 251 | 27 | 1 | 1 | 250 | 1 | 251 | 1.13e-166 | 461 |
| MS.gene03545.t1 | AT3G61470 | 52.703 | 222 | 96 | 3 | 38 | 250 | 34 | 255 | 1.52e-74 | 228 |
| MS.gene03545.t1 | AT1G45474 | 49.356 | 233 | 107 | 5 | 26 | 249 | 21 | 251 | 1.36e-68 | 212 |
| MS.gene03545.t1 | AT1G45474 | 49.356 | 233 | 107 | 5 | 26 | 249 | 21 | 251 | 1.36e-68 | 212 |
| MS.gene03545.t1 | AT1G19150 | 44.681 | 235 | 122 | 2 | 24 | 250 | 34 | 268 | 1.94e-66 | 207 |
| MS.gene03545.t1 | AT1G61520 | 44.978 | 229 | 93 | 9 | 48 | 249 | 48 | 270 | 2.90e-46 | 155 |
| MS.gene03545.t1 | AT1G61520 | 44.978 | 229 | 93 | 9 | 48 | 249 | 48 | 270 | 2.90e-46 | 155 |
| MS.gene03545.t1 | AT1G61520 | 46.154 | 208 | 79 | 9 | 69 | 249 | 14 | 215 | 2.25e-43 | 146 |
| MS.gene03545.t1 | AT3G54890 | 41.176 | 204 | 90 | 6 | 55 | 245 | 47 | 233 | 4.38e-42 | 144 |
| MS.gene03545.t1 | AT3G08940 | 31.359 | 287 | 115 | 8 | 23 | 250 | 22 | 285 | 5.27e-31 | 116 |
| MS.gene03545.t1 | AT3G54890 | 35.500 | 200 | 73 | 4 | 55 | 245 | 47 | 199 | 1.09e-30 | 113 |
| MS.gene03545.t1 | AT2G05070 | 35.644 | 202 | 96 | 6 | 62 | 243 | 65 | 252 | 1.24e-30 | 115 |
| MS.gene03545.t1 | AT2G05100 | 35.644 | 202 | 96 | 6 | 62 | 243 | 65 | 252 | 1.39e-30 | 114 |
| MS.gene03545.t1 | AT1G29930 | 35.567 | 194 | 108 | 4 | 62 | 243 | 66 | 254 | 1.91e-30 | 114 |
| MS.gene03545.t1 | AT1G29920 | 35.567 | 194 | 108 | 4 | 62 | 243 | 66 | 254 | 2.01e-30 | 114 |
| MS.gene03545.t1 | AT1G29910 | 35.567 | 194 | 108 | 4 | 62 | 243 | 66 | 254 | 2.01e-30 | 114 |
| MS.gene03545.t1 | AT2G34420 | 32.046 | 259 | 153 | 7 | 1 | 243 | 1 | 252 | 3.37e-30 | 114 |
| MS.gene03545.t1 | AT1G76570 | 38.208 | 212 | 99 | 8 | 63 | 250 | 123 | 326 | 3.51e-30 | 115 |
| MS.gene03545.t1 | AT2G34430 | 32.468 | 231 | 135 | 6 | 27 | 243 | 30 | 253 | 5.36e-30 | 113 |
| MS.gene03545.t1 | AT5G01530 | 32.567 | 261 | 94 | 6 | 49 | 250 | 51 | 288 | 7.25e-30 | 113 |
| MS.gene03545.t1 | AT3G27690 | 35.149 | 202 | 97 | 6 | 62 | 243 | 66 | 253 | 8.70e-30 | 112 |
| MS.gene03545.t1 | AT3G27690 | 35.149 | 202 | 97 | 6 | 62 | 243 | 98 | 285 | 1.54e-29 | 112 |
| MS.gene03545.t1 | AT4G10340 | 37.500 | 200 | 105 | 6 | 63 | 251 | 82 | 272 | 4.12e-29 | 111 |
| MS.gene03545.t1 | AT5G54270 | 38.308 | 201 | 98 | 6 | 60 | 243 | 61 | 252 | 7.87e-28 | 107 |
| MS.gene03545.t1 | AT1G15820 | 33.594 | 256 | 122 | 12 | 16 | 233 | 11 | 256 | 2.71e-27 | 106 |
| MS.gene03545.t1 | AT3G54890 | 36.932 | 176 | 81 | 6 | 54 | 216 | 46 | 204 | 6.72e-25 | 98.6 |
| MS.gene03545.t1 | AT5G28450 | 50.495 | 101 | 44 | 3 | 156 | 250 | 71 | 171 | 1.48e-22 | 91.3 |
| MS.gene03545.t1 | AT2G05100 | 33.333 | 189 | 92 | 6 | 62 | 230 | 65 | 239 | 4.06e-22 | 93.6 |
| MS.gene03545.t1 | AT2G40100 | 31.466 | 232 | 78 | 6 | 56 | 229 | 59 | 267 | 3.36e-21 | 90.1 |
| MS.gene03545.t1 | AT3G54890 | 38.739 | 111 | 59 | 3 | 55 | 156 | 47 | 157 | 1.66e-17 | 77.8 |
Find 86 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTGCATCGTACCATTT+TGG | 0.221678 | 3.4:-30128769 | None:intergenic |
| ATTGGCAATGTTAGCATTCT+TGG | 0.263254 | 3.4:+30129352 | MS.gene03545:CDS |
| CAAACCACATGGCCGGAAAA+TGG | 0.281257 | 3.4:-30127647 | None:intergenic |
| CCAATGTTGGTGAAGACTTC+AGG | 0.283187 | 3.4:-30128733 | None:intergenic |
| AGGTTCCTTACTGGTTCTTC+TGG | 0.312510 | 3.4:+30127676 | MS.gene03545:CDS |
| TTGAAATCAAGGTTCCTTAC+TGG | 0.312689 | 3.4:+30127667 | MS.gene03545:CDS |
| GAATCATCAACGTTCCAAAA+TGG | 0.354053 | 3.4:+30128755 | MS.gene03545:CDS |
| TGTATTGATATTAGTCTTCC+CGG | 0.354614 | 3.4:+30128592 | MS.gene03545:intron |
| GGCCATGTGGTTTGAAATCA+AGG | 0.359010 | 3.4:+30127656 | MS.gene03545:CDS |
| TGGGCTATGTTAGGTGTTGC+AGG | 0.363791 | 3.4:+30128700 | MS.gene03545:CDS |
| AGGAGAGTGGTTGCCTGGTT+TGG | 0.364447 | 3.4:+30127774 | MS.gene03545:CDS |
| TGAACAGAGAAGTGTCTATT+AGG | 0.379797 | 3.4:+30127704 | MS.gene03545:CDS |
| ACAAACCACTTCAAGTTCTC+TGG | 0.381297 | 3.4:-30128652 | None:intergenic |
| TCAAATGTTTGCAGGGAGAT+TGG | 0.385168 | 3.4:+30129334 | MS.gene03545:intron |
| TTCTCTTTAGCTTCCAGAGT+TGG | 0.397152 | 3.4:-30128985 | None:intergenic |
| TTGGCAATGTTAGCATTCTT+GGG | 0.411192 | 3.4:+30129353 | MS.gene03545:CDS |
| GCTTCCCCTGGTTACCTCAC+TGG | 0.420500 | 3.4:+30127796 | MS.gene03545:CDS |
| ATTGCTTGAAGATAGGATCT+TGG | 0.434539 | 3.4:-30128900 | None:intergenic |
| TTGCCTGGTTTGGCTTCCCC+TGG | 0.440427 | 3.4:+30127784 | MS.gene03545:CDS |
| TTTGAACTTTGCACCAACTC+TGG | 0.443047 | 3.4:+30128972 | MS.gene03545:CDS |
| TTTAAGGTTGAAGCTAAGAA+AGG | 0.444868 | 3.4:+30127754 | MS.gene03545:CDS |
| TGGATCGAATCCGTTGTCTC+CGG | 0.445088 | 3.4:-30128611 | None:intergenic |
| GTCATTCAGCACAATGTGAC+AGG | 0.452299 | 3.4:+30129380 | MS.gene03545:CDS |
| GGATCTTGGTTAACGCTACC+AGG | 0.456937 | 3.4:-30128886 | None:intergenic |
| CAGCACAATGTGACAGGAAA+AGG | 0.457752 | 3.4:+30129386 | MS.gene03545:CDS |
| GAAGTGTCTATTAGGCCAAT+GGG | 0.459274 | 3.4:+30127712 | MS.gene03545:CDS |
| TAACCAGGGGAAGCCAAACC+AGG | 0.461430 | 3.4:-30127787 | None:intergenic |
| GGATCGAATCCGTTGTCTCC+GGG | 0.465013 | 3.4:-30128610 | None:intergenic |
| CAATGTTGGTGAAGACTTCA+GGG | 0.467740 | 3.4:-30128732 | None:intergenic |
| ATCTTCTAATCTCGACGTAA+TGG | 0.468668 | 3.4:-30128846 | None:intergenic |
| GGTCTGAAAGGTGCTGCAAC+AGG | 0.470578 | 3.4:-30129421 | None:intergenic |
| AAGCTGTATTGCTTGAAGAT+AGG | 0.474202 | 3.4:-30128907 | None:intergenic |
| GTTCAAGCCGAGCTTGTGAA+TGG | 0.475321 | 3.4:+30128673 | MS.gene03545:CDS |
| TACCTGCCAGTGAGGTAACC+AGG | 0.476834 | 3.4:-30127802 | None:intergenic |
| AAGAAAGGAGAGTGGTTGCC+TGG | 0.478204 | 3.4:+30127769 | MS.gene03545:CDS |
| GGGTAACCAACCTCACCCTT+TGG | 0.479854 | 3.4:-30128931 | None:intergenic |
| GTTCCAAAATGGTACGATGC+AGG | 0.482951 | 3.4:+30128766 | MS.gene03545:CDS |
| CCTGAAGTCTTCACCAACAT+TGG | 0.483026 | 3.4:+30128733 | MS.gene03545:CDS |
| AATGGACGTTGGGCTATGTT+AGG | 0.483699 | 3.4:+30128691 | MS.gene03545:CDS |
| AGAGTTGGTGCAAAGTTCAA+AGG | 0.492262 | 3.4:-30128970 | None:intergenic |
| CGAGCTTGTGAATGGACGTT+GGG | 0.494207 | 3.4:+30128681 | MS.gene03545:CDS |
| AAAGAGAAGGAAATTGCTAA+TGG | 0.501630 | 3.4:+30129000 | MS.gene03545:CDS |
| AGCTTGCCAAAGGGTGAGGT+TGG | 0.502406 | 3.4:+30128925 | MS.gene03545:CDS |
| AGACAACGGATTCGATCCAT+TGG | 0.505395 | 3.4:+30128615 | MS.gene03545:CDS |
| GAACAATAGTGTTGTGCCAT+GGG | 0.519149 | 3.4:-30129442 | None:intergenic |
| CCCCTGGTTACCTCACTGGC+AGG | 0.522153 | 3.4:+30127800 | MS.gene03545:CDS |
| GGATCCTCGGCGAGTCCCAA+TGG | 0.523598 | 3.4:-30128631 | None:intergenic |
| AACGTTGATGATTCCAATGT+TGG | 0.527016 | 3.4:-30128746 | None:intergenic |
| TGCTGCAACAGGTTATCAAA+TGG | 0.529127 | 3.4:-30129410 | None:intergenic |
| GAGTTGGTGCAAAGTTCAAA+GGG | 0.532634 | 3.4:-30128969 | None:intergenic |
| AAGGGTGAGGTTGGTTACCC+CGG | 0.533098 | 3.4:+30128934 | MS.gene03545:CDS |
| TTGATTTCAAACCACATGGC+CGG | 0.533466 | 3.4:-30127654 | None:intergenic |
| CTTCAAGTTCTCTGGATCCT+CGG | 0.535637 | 3.4:-30128644 | None:intergenic |
| AGAAGTGTCTATTAGGCCAA+TGG | 0.541077 | 3.4:+30127711 | MS.gene03545:CDS |
| TTCCAAAATGGTACGATGCA+GGG | 0.551197 | 3.4:+30128767 | MS.gene03545:CDS |
| TGCAGCACCTTTCAGACCCA+TGG | 0.554860 | 3.4:+30129426 | MS.gene03545:CDS |
| ATACAGCTTGCCAAAGGGTG+AGG | 0.558596 | 3.4:+30128921 | MS.gene03545:CDS |
| CAAGCAATACAGCTTGCCAA+AGG | 0.568836 | 3.4:+30128915 | MS.gene03545:CDS |
| ATTACGTCGAGATTAGAAGA+TGG | 0.573199 | 3.4:+30128848 | MS.gene03545:CDS |
| AAGCAATACAGCTTGCCAAA+GGG | 0.573830 | 3.4:+30128916 | MS.gene03545:CDS |
| TGAACAATAGTGTTGTGCCA+TGG | 0.575513 | 3.4:-30129443 | None:intergenic |
| ACTTACCAGAAGAACCAGTA+AGG | 0.587465 | 3.4:-30127681 | None:intergenic |
| GACAACGGATTCGATCCATT+GGG | 0.589479 | 3.4:+30128616 | MS.gene03545:CDS |
| GCAGAAGGTGAACACCCCAT+TGG | 0.591132 | 3.4:-30127727 | None:intergenic |
| CCGAGCTTGTGAATGGACGT+TGG | 0.595865 | 3.4:+30128680 | MS.gene03545:CDS |
| ATTAGTCTTCCCGGAGACAA+CGG | 0.597783 | 3.4:+30128601 | MS.gene03545:intron |
| AACTCTGGAAGCTAAAGAGA+AGG | 0.599977 | 3.4:+30128987 | MS.gene03545:CDS |
| TGTTGTGCCATGGGTCTGAA+AGG | 0.604426 | 3.4:-30129433 | None:intergenic |
| ACCTGCCAGTGAGGTAACCA+GGG | 0.604553 | 3.4:-30127801 | None:intergenic |
| CCAACGTCCATTCACAAGCT+CGG | 0.607811 | 3.4:-30128680 | None:intergenic |
| CGATCCATTGGGACTCGCCG+AGG | 0.610673 | 3.4:+30128627 | MS.gene03545:CDS |
| GGGCTATGTTAGGTGTTGCA+GGG | 0.612177 | 3.4:+30128701 | MS.gene03545:CDS |
| AACCTTGATTTCAAACCACA+TGG | 0.619985 | 3.4:-30127658 | None:intergenic |
| TTGAAGCTAAGAAAGGAGAG+TGG | 0.624150 | 3.4:+30127761 | MS.gene03545:CDS |
| AGGATCCAGAGAACTTGAAG+TGG | 0.633648 | 3.4:+30128647 | MS.gene03545:CDS |
| TGGCAAGACATTAAGAACCC+TGG | 0.635088 | 3.4:+30128868 | MS.gene03545:CDS |
| CATGGCCACTGTTACTACAC+AGG | 0.640157 | 3.4:+30127615 | None:intergenic |
| GATTGACATACCTGCCAGTG+AGG | 0.658865 | 3.4:-30127810 | None:intergenic |
| TCAACCTTAAAAGAAGCAGA+AGG | 0.663014 | 3.4:-30127742 | None:intergenic |
| GATCTTGGTTAACGCTACCA+GGG | 0.663089 | 3.4:-30128885 | None:intergenic |
| GGTGAGGTTGGTTACCCCGG+TGG | 0.669754 | 3.4:+30128937 | MS.gene03545:CDS |
| AGAAGCCTGTGTAGTAACAG+TGG | 0.678873 | 3.4:-30127620 | None:intergenic |
| ATTGTTCAAACACTGAGTGG+TGG | 0.700611 | 3.4:+30129458 | MS.gene03545:CDS |
| ACTATTGTTCAAACACTGAG+TGG | 0.708128 | 3.4:+30129455 | MS.gene03545:CDS |
| AAGTGTCTATTAGGCCAATG+GGG | 0.719152 | 3.4:+30127713 | MS.gene03545:CDS |
| CCTGCCAGTGAGGTAACCAG+GGG | 0.743123 | 3.4:-30127800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTATTATTTTATTAGTAT+AGG | + | chr3.4:30128082-30128101 | MS.gene03545:intron | 15.0% |
| !! | TAGTTTCATAATCAAAAAAC+AGG | - | chr3.4:30129294-30129313 | None:intergenic | 20.0% |
| !! | TTGATTATGTTAATTAGATG+TGG | - | chr3.4:30129234-30129253 | None:intergenic | 20.0% |
| !!! | GTTTTTTGATTATGAAACTA+TGG | + | chr3.4:30129294-30129313 | MS.gene03545:intron | 20.0% |
| ! | AATATTGATCTGTATGTTGT+TGG | - | chr3.4:30128033-30128052 | None:intergenic | 25.0% |
| ! | ATCAAAGTCTTTGCTTAAAT+GGG | + | chr3.4:30129062-30129081 | MS.gene03545:intron | 25.0% |
| ! | CTAAATTATCCCATCTAAAT+TGG | - | chr3.4:30129169-30129188 | None:intergenic | 25.0% |
| !! | CAAATTTGATCGATTTCATA+AGG | + | chr3.4:30129251-30129270 | MS.gene03545:intron | 25.0% |
| !!! | TTTTTTAAGTGTACACTTGA+TGG | + | chr3.4:30128492-30128511 | MS.gene03545:intron | 25.0% |
| AAAGAGAAGGAAATTGCTAA+TGG | + | chr3.4:30129000-30129019 | MS.gene03545:CDS | 30.0% | |
| CATCAAAGTCTTTGCTTAAA+TGG | + | chr3.4:30129061-30129080 | MS.gene03545:intron | 30.0% | |
| GTGTATTTCAAATGTTTGCA+GGG | + | chr3.4:30129327-30129346 | MS.gene03545:intron | 30.0% | |
| TGTGTATTTCAAATGTTTGC+AGG | + | chr3.4:30129326-30129345 | MS.gene03545:intron | 30.0% | |
| ! | TTTAAGGTTGAAGCTAAGAA+AGG | + | chr3.4:30127754-30127773 | MS.gene03545:CDS | 30.0% |
| !! | TGTATTGATATTAGTCTTCC+CGG | + | chr3.4:30128592-30128611 | MS.gene03545:intron | 30.0% |
| AAAGGGTTAAAAATTCCACC+GGG | - | chr3.4:30128955-30128974 | None:intergenic | 35.0% | |
| AACCTTGATTTCAAACCACA+TGG | - | chr3.4:30127661-30127680 | None:intergenic | 35.0% | |
| AAGCTGTATTGCTTGAAGAT+AGG | - | chr3.4:30128910-30128929 | None:intergenic | 35.0% | |
| ACTATTGTTCAAACACTGAG+TGG | + | chr3.4:30129455-30129474 | MS.gene03545:CDS | 35.0% | |
| AGACTTTGATGCAGTATTTC+AGG | - | chr3.4:30129052-30129071 | None:intergenic | 35.0% | |
| AGTGTGACATTGAAACATGT+CGG | + | chr3.4:30127978-30127997 | MS.gene03545:intron | 35.0% | |
| ATCCCATCTAAATTGGTACT+GGG | - | chr3.4:30129162-30129181 | None:intergenic | 35.0% | |
| ATCTTCTAATCTCGACGTAA+TGG | - | chr3.4:30128849-30128868 | None:intergenic | 35.0% | |
| ATTACGTCGAGATTAGAAGA+TGG | + | chr3.4:30128848-30128867 | MS.gene03545:CDS | 35.0% | |
| ATTGCTTGAAGATAGGATCT+TGG | - | chr3.4:30128903-30128922 | None:intergenic | 35.0% | |
| ATTGGCAATGTTAGCATTCT+TGG | + | chr3.4:30129352-30129371 | MS.gene03545:CDS | 35.0% | |
| CAAAGGGTTAAAAATTCCAC+CGG | - | chr3.4:30128956-30128975 | None:intergenic | 35.0% | |
| GAATCATCAACGTTCCAAAA+TGG | + | chr3.4:30128755-30128774 | MS.gene03545:CDS | 35.0% | |
| GATCATGTTCAAAGACTCAA+CGG | - | chr3.4:30128404-30128423 | None:intergenic | 35.0% | |
| TATCCCATCTAAATTGGTAC+TGG | - | chr3.4:30129163-30129182 | None:intergenic | 35.0% | |
| TATGCATAAGCTCAACTCAA+GGG | - | chr3.4:30128063-30128082 | None:intergenic | 35.0% | |
| TCAACCTTAAAAGAAGCAGA+AGG | - | chr3.4:30127745-30127764 | None:intergenic | 35.0% | |
| TTGAAATCAAGGTTCCTTAC+TGG | + | chr3.4:30127667-30127686 | MS.gene03545:CDS | 35.0% | |
| TTGAGTCTTTGAACATGATC+TGG | + | chr3.4:30128404-30128423 | MS.gene03545:intron | 35.0% | |
| TTGGCAATGTTAGCATTCTT+GGG | + | chr3.4:30129353-30129372 | MS.gene03545:CDS | 35.0% | |
| TTTAAGTGTACACTTGATGG+AGG | + | chr3.4:30128495-30128514 | MS.gene03545:intron | 35.0% | |
| ! | TTCACCTTCTGCTTCTTTTA+AGG | + | chr3.4:30127738-30127757 | MS.gene03545:CDS | 35.0% |
| !! | AACGTTGATGATTCCAATGT+TGG | - | chr3.4:30128749-30128768 | None:intergenic | 35.0% |
| !! | TGAACAGAGAAGTGTCTATT+AGG | + | chr3.4:30127704-30127723 | MS.gene03545:CDS | 35.0% |
| AAGCAATACAGCTTGCCAAA+GGG | + | chr3.4:30128916-30128935 | MS.gene03545:CDS | 40.0% | |
| AAGGGTTAAAAATTCCACCG+GGG | - | chr3.4:30128954-30128973 | None:intergenic | 40.0% | |
| AAGTGTCTATTAGGCCAATG+GGG | + | chr3.4:30127713-30127732 | MS.gene03545:CDS | 40.0% | |
| ACTTACCAGAAGAACCAGTA+AGG | - | chr3.4:30127684-30127703 | None:intergenic | 40.0% | |
| ATGCATAAGCTCAACTCAAG+GGG | - | chr3.4:30128062-30128081 | None:intergenic | 40.0% | |
| ATTGTTCAAACACTGAGTGG+TGG | + | chr3.4:30129458-30129477 | MS.gene03545:CDS | 40.0% | |
| CTATGCATAAGCTCAACTCA+AGG | - | chr3.4:30128064-30128083 | None:intergenic | 40.0% | |
| GAACAATAGTGTTGTGCCAT+GGG | - | chr3.4:30129445-30129464 | None:intergenic | 40.0% | |
| TCAAATGTTTGCAGGGAGAT+TGG | + | chr3.4:30129334-30129353 | MS.gene03545:intron | 40.0% | |
| TCCCATCTAAATTGGTACTG+GGG | - | chr3.4:30129161-30129180 | None:intergenic | 40.0% | |
| TCCCCAGTACCAATTTAGAT+GGG | + | chr3.4:30129157-30129176 | MS.gene03545:intron | 40.0% | |
| TCTTTGCTTAAATGGGACCT+GGG | + | chr3.4:30129069-30129088 | MS.gene03545:intron | 40.0% | |
| TGAACAATAGTGTTGTGCCA+TGG | - | chr3.4:30129446-30129465 | None:intergenic | 40.0% | |
| TGCTGCAACAGGTTATCAAA+TGG | - | chr3.4:30129413-30129432 | None:intergenic | 40.0% | |
| TGTCCTGTTGGTATTGTCTT+GGG | + | chr3.4:30129093-30129112 | MS.gene03545:intron | 40.0% | |
| TTCCAAAATGGTACGATGCA+GGG | + | chr3.4:30128767-30128786 | MS.gene03545:CDS | 40.0% | |
| TTGAAGCTAAGAAAGGAGAG+TGG | + | chr3.4:30127761-30127780 | MS.gene03545:CDS | 40.0% | |
| TTGATTTCAAACCACATGGC+CGG | - | chr3.4:30127657-30127676 | None:intergenic | 40.0% | |
| TTGGTATTGTCTTGGGATCT+GGG | + | chr3.4:30129100-30129119 | MS.gene03545:intron | 40.0% | |
| TTGTCCTGTTGGTATTGTCT+TGG | + | chr3.4:30129092-30129111 | MS.gene03545:intron | 40.0% | |
| TTTGAACTTTGCACCAACTC+TGG | + | chr3.4:30128972-30128991 | MS.gene03545:CDS | 40.0% | |
| ! | AACTCTGGAAGCTAAAGAGA+AGG | + | chr3.4:30128987-30129006 | MS.gene03545:CDS | 40.0% |
| ! | ACAAACCACTTCAAGTTCTC+TGG | - | chr3.4:30128655-30128674 | None:intergenic | 40.0% |
| ! | CAATGTTGGTGAAGACTTCA+GGG | - | chr3.4:30128735-30128754 | None:intergenic | 40.0% |
| ! | GAAGTGTCTATTAGGCCAAT+GGG | + | chr3.4:30127712-30127731 | MS.gene03545:CDS | 40.0% |
| ! | TTCTCTTTAGCTTCCAGAGT+TGG | - | chr3.4:30128988-30129007 | None:intergenic | 40.0% |
| !! | AGAAGTGTCTATTAGGCCAA+TGG | + | chr3.4:30127711-30127730 | MS.gene03545:CDS | 40.0% |
| !! | AGAGTTGGTGCAAAGTTCAA+AGG | - | chr3.4:30128973-30128992 | None:intergenic | 40.0% |
| !! | GAGTTGGTGCAAAGTTCAAA+GGG | - | chr3.4:30128972-30128991 | None:intergenic | 40.0% |
| AATGGACGTTGGGCTATGTT+AGG | + | chr3.4:30128691-30128710 | MS.gene03545:CDS | 45.0% | |
| AGAAGCCTGTGTAGTAACAG+TGG | - | chr3.4:30127623-30127642 | None:intergenic | 45.0% | |
| AGGATCCAGAGAACTTGAAG+TGG | + | chr3.4:30128647-30128666 | MS.gene03545:CDS | 45.0% | |
| CAAGCAATACAGCTTGCCAA+AGG | + | chr3.4:30128915-30128934 | MS.gene03545:CDS | 45.0% | |
| CAGCACAATGTGACAGGAAA+AGG | + | chr3.4:30129386-30129405 | MS.gene03545:CDS | 45.0% | |
| CCTGAAGTCTTCACCAACAT+TGG | + | chr3.4:30128733-30128752 | MS.gene03545:CDS | 45.0% | |
| CTCCCCAGTACCAATTTAGA+TGG | + | chr3.4:30129156-30129175 | MS.gene03545:intron | 45.0% | |
| GATCCCAAGACAATACCAAC+AGG | - | chr3.4:30129099-30129118 | None:intergenic | 45.0% | |
| GATCTTGGTTAACGCTACCA+GGG | - | chr3.4:30128888-30128907 | None:intergenic | 45.0% | |
| GTCATTCAGCACAATGTGAC+AGG | + | chr3.4:30129380-30129399 | MS.gene03545:CDS | 45.0% | |
| GTCTTTGCTTAAATGGGACC+TGG | + | chr3.4:30129068-30129087 | MS.gene03545:intron | 45.0% | |
| GTTCCAAAATGGTACGATGC+AGG | + | chr3.4:30128766-30128785 | MS.gene03545:CDS | 45.0% | |
| GTTGGTATTGTCTTGGGATC+TGG | + | chr3.4:30129099-30129118 | MS.gene03545:intron | 45.0% | |
| TGCATAAGCTCAACTCAAGG+GGG | - | chr3.4:30128061-30128080 | None:intergenic | 45.0% | |
| TGGCAAGACATTAAGAACCC+TGG | + | chr3.4:30128868-30128887 | MS.gene03545:CDS | 45.0% | |
| ! | AGACAACGGATTCGATCCAT+TGG | + | chr3.4:30128615-30128634 | MS.gene03545:CDS | 45.0% |
| ! | CCAATGTTGGTGAAGACTTC+AGG | - | chr3.4:30128736-30128755 | None:intergenic | 45.0% |
| ! | CTTCAAGTTCTCTGGATCCT+CGG | - | chr3.4:30128647-30128666 | None:intergenic | 45.0% |
| ! | GACAACGGATTCGATCCATT+GGG | + | chr3.4:30128616-30128635 | MS.gene03545:CDS | 45.0% |
| ! | GGCCATGTGGTTTGAAATCA+AGG | + | chr3.4:30127656-30127675 | MS.gene03545:CDS | 45.0% |
| ! | TTCCCTGCATCGTACCATTT+TGG | - | chr3.4:30128772-30128791 | None:intergenic | 45.0% |
| !! | AGGTTCCTTACTGGTTCTTC+TGG | + | chr3.4:30127676-30127695 | MS.gene03545:CDS | 45.0% |
| !! | ATTAGTCTTCCCGGAGACAA+CGG | + | chr3.4:30128601-30128620 | MS.gene03545:intron | 45.0% |
| AAGAAAGGAGAGTGGTTGCC+TGG | + | chr3.4:30127769-30127788 | MS.gene03545:CDS | 50.0% | |
| ATACAGCTTGCCAAAGGGTG+AGG | + | chr3.4:30128921-30128940 | MS.gene03545:CDS | 50.0% | |
| CAAACCACATGGCCGGAAAA+TGG | - | chr3.4:30127650-30127669 | None:intergenic | 50.0% | |
| CAATACCAACAGGACAACCC+AGG | - | chr3.4:30129089-30129108 | None:intergenic | 50.0% | |
| CCAACGTCCATTCACAAGCT+CGG | - | chr3.4:30128683-30128702 | None:intergenic | 50.0% | |
| CGAGCTTGTGAATGGACGTT+GGG | + | chr3.4:30128681-30128700 | MS.gene03545:CDS | 50.0% | |
| GATTGACATACCTGCCAGTG+AGG | - | chr3.4:30127813-30127832 | None:intergenic | 50.0% | |
| GCATCGAACCTGAGACCTTA+AGG | - | chr3.4:30129137-30129156 | None:intergenic | 50.0% | |
| GGATCTTGGTTAACGCTACC+AGG | - | chr3.4:30128889-30128908 | None:intergenic | 50.0% | |
| GTTCAAGCCGAGCTTGTGAA+TGG | + | chr3.4:30128673-30128692 | MS.gene03545:CDS | 50.0% | |
| TCGAACCTGAGACCTTAAGG+AGG | - | chr3.4:30129134-30129153 | None:intergenic | 50.0% | |
| TGGATCGAATCCGTTGTCTC+CGG | - | chr3.4:30128614-30128633 | None:intergenic | 50.0% | |
| TGTCACACTCGCTACATCGA+TGG | - | chr3.4:30127967-30127986 | None:intergenic | 50.0% | |
| TGTTGTGCCATGGGTCTGAA+AGG | - | chr3.4:30129436-30129455 | None:intergenic | 50.0% | |
| ! | GGGCTATGTTAGGTGTTGCA+GGG | + | chr3.4:30128701-30128720 | MS.gene03545:CDS | 50.0% |
| ! | TGGGCTATGTTAGGTGTTGC+AGG | + | chr3.4:30128700-30128719 | MS.gene03545:CDS | 50.0% |
| !! | AGGCTTCTGCAGCCATTTTC+CGG | + | chr3.4:30127635-30127654 | MS.gene03545:CDS | 50.0% |
| ACCTGCCAGTGAGGTAACCA+GGG | - | chr3.4:30127804-30127823 | None:intergenic | 55.0% | |
| AGCTTGCCAAAGGGTGAGGT+TGG | + | chr3.4:30128925-30128944 | MS.gene03545:CDS | 55.0% | |
| AGGAGAGTGGTTGCCTGGTT+TGG | + | chr3.4:30127774-30127793 | MS.gene03545:CDS | 55.0% | |
| CCGAGCTTGTGAATGGACGT+TGG | + | chr3.4:30128680-30128699 | MS.gene03545:CDS | 55.0% | |
| GCAGAAGGTGAACACCCCAT+TGG | - | chr3.4:30127730-30127749 | None:intergenic | 55.0% | |
| GGATCGAATCCGTTGTCTCC+GGG | - | chr3.4:30128613-30128632 | None:intergenic | 55.0% | |
| GGGTAACCAACCTCACCCTT+TGG | - | chr3.4:30128934-30128953 | None:intergenic | 55.0% | |
| GTGCTCCTCCTTAAGGTCTC+AGG | + | chr3.4:30129126-30129145 | MS.gene03545:intron | 55.0% | |
| TAACCAGGGGAAGCCAAACC+AGG | - | chr3.4:30127790-30127809 | None:intergenic | 55.0% | |
| TACCTGCCAGTGAGGTAACC+AGG | - | chr3.4:30127805-30127824 | None:intergenic | 55.0% | |
| TGCAGCACCTTTCAGACCCA+TGG | + | chr3.4:30129426-30129445 | MS.gene03545:CDS | 55.0% | |
| ! | AAGGGTGAGGTTGGTTACCC+CGG | + | chr3.4:30128934-30128953 | MS.gene03545:CDS | 55.0% |
| ! | TGGGAGTGTGCTCCTCCTTA+AGG | + | chr3.4:30129119-30129138 | MS.gene03545:intron | 55.0% |
| !! | GGTCTGAAAGGTGCTGCAAC+AGG | - | chr3.4:30129424-30129443 | None:intergenic | 55.0% |
| CCTGCCAGTGAGGTAACCAG+GGG | - | chr3.4:30127803-30127822 | None:intergenic | 60.0% | |
| GCTTCCCCTGGTTACCTCAC+TGG | + | chr3.4:30127796-30127815 | MS.gene03545:CDS | 60.0% | |
| TGGGACCTGGGTTGTCCTGT+TGG | + | chr3.4:30129081-30129100 | MS.gene03545:intron | 60.0% | |
| !! | GCAGCCATTTTCCGGCCATG+TGG | + | chr3.4:30127643-30127662 | MS.gene03545:CDS | 60.0% |
| !! | TTGCCTGGTTTGGCTTCCCC+TGG | + | chr3.4:30127784-30127803 | MS.gene03545:CDS | 60.0% |
| CCCCTGGTTACCTCACTGGC+AGG | + | chr3.4:30127800-30127819 | MS.gene03545:CDS | 65.0% | |
| CGATCCATTGGGACTCGCCG+AGG | + | chr3.4:30128627-30128646 | MS.gene03545:CDS | 65.0% | |
| GGATCCTCGGCGAGTCCCAA+TGG | - | chr3.4:30128634-30128653 | None:intergenic | 65.0% | |
| ! | GGTGAGGTTGGTTACCCCGG+TGG | + | chr3.4:30128937-30128956 | MS.gene03545:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 30127616 | 30129487 | 30127616 | ID=MS.gene03545 |
| chr3.4 | mRNA | 30127616 | 30129487 | 30127616 | ID=MS.gene03545.t1;Parent=MS.gene03545 |
| chr3.4 | exon | 30127616 | 30127821 | 30127616 | ID=MS.gene03545.t1.exon1;Parent=MS.gene03545.t1 |
| chr3.4 | CDS | 30127616 | 30127821 | 30127616 | ID=cds.MS.gene03545.t1;Parent=MS.gene03545.t1 |
| chr3.4 | exon | 30128606 | 30129021 | 30128606 | ID=MS.gene03545.t1.exon2;Parent=MS.gene03545.t1 |
| chr3.4 | CDS | 30128606 | 30129021 | 30128606 | ID=cds.MS.gene03545.t1;Parent=MS.gene03545.t1 |
| chr3.4 | exon | 30129348 | 30129487 | 30129348 | ID=MS.gene03545.t1.exon3;Parent=MS.gene03545.t1 |
| chr3.4 | CDS | 30129348 | 30129487 | 30129348 | ID=cds.MS.gene03545.t1;Parent=MS.gene03545.t1 |
| Gene Sequence |
| Protein sequence |
