Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025560.t1 | XP_003605795.2 | 95.9 | 367 | 15 | 0 | 1 | 367 | 4 | 370 | 8.80E-208 | 732.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025560.t1 | G7JUL6 | 95.9 | 367 | 15 | 0 | 1 | 367 | 1 | 367 | 6.3e-208 | 732.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene025560 | PPI |
| MS.gene025560 | MS.gene60267 | PPI |
| MS.gene025560 | MS.gene015971 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025560.t1 | MTR_4g039740 | 95.913 | 367 | 15 | 0 | 1 | 367 | 1 | 367 | 0.0 | 734 |
| MS.gene025560.t1 | MTR_4g039720 | 92.391 | 368 | 27 | 1 | 1 | 367 | 4 | 371 | 0.0 | 707 |
| MS.gene025560.t1 | MTR_4g039680 | 88.283 | 367 | 43 | 0 | 1 | 367 | 1 | 367 | 0.0 | 682 |
| MS.gene025560.t1 | MTR_0045s0110 | 79.019 | 367 | 77 | 0 | 1 | 367 | 1 | 367 | 0.0 | 607 |
| MS.gene025560.t1 | MTR_1g011800 | 53.939 | 330 | 150 | 2 | 34 | 361 | 39 | 368 | 2.05e-130 | 378 |
| MS.gene025560.t1 | MTR_2g103170 | 50.000 | 334 | 161 | 2 | 34 | 361 | 28 | 361 | 1.19e-115 | 341 |
| MS.gene025560.t1 | MTR_2g019600 | 41.692 | 331 | 192 | 1 | 34 | 363 | 35 | 365 | 1.76e-94 | 287 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025560.t1 | AT3G08030 | 68.824 | 340 | 105 | 1 | 29 | 367 | 26 | 365 | 3.63e-179 | 502 |
| MS.gene025560.t1 | AT3G08030 | 69.969 | 323 | 96 | 1 | 46 | 367 | 1 | 323 | 5.37e-173 | 484 |
| MS.gene025560.t1 | AT2G41810 | 58.242 | 364 | 148 | 3 | 3 | 363 | 4 | 366 | 1.09e-152 | 435 |
| MS.gene025560.t1 | AT2G41800 | 60.542 | 332 | 130 | 1 | 34 | 364 | 36 | 367 | 5.57e-151 | 431 |
| MS.gene025560.t1 | AT5G25460 | 53.541 | 353 | 163 | 1 | 10 | 361 | 9 | 361 | 2.44e-137 | 396 |
| MS.gene025560.t1 | AT5G11420 | 55.927 | 329 | 144 | 1 | 34 | 361 | 30 | 358 | 4.73e-137 | 395 |
| MS.gene025560.t1 | AT4G32460 | 54.407 | 329 | 149 | 1 | 34 | 361 | 29 | 357 | 1.01e-134 | 389 |
| MS.gene025560.t1 | AT4G32460 | 54.407 | 329 | 149 | 1 | 34 | 361 | 29 | 357 | 1.01e-134 | 389 |
| MS.gene025560.t1 | AT4G32460 | 54.890 | 317 | 142 | 1 | 46 | 361 | 1 | 317 | 2.93e-132 | 381 |
| MS.gene025560.t1 | AT4G32460 | 54.890 | 317 | 142 | 1 | 46 | 361 | 1 | 317 | 2.93e-132 | 381 |
| MS.gene025560.t1 | AT1G80240 | 51.368 | 329 | 159 | 1 | 34 | 361 | 32 | 360 | 9.65e-117 | 343 |
| MS.gene025560.t1 | AT2G34510 | 42.262 | 336 | 188 | 2 | 34 | 363 | 43 | 378 | 7.30e-96 | 291 |
| MS.gene025560.t1 | AT1G29980 | 40.882 | 340 | 191 | 2 | 34 | 363 | 7 | 346 | 1.53e-95 | 289 |
| MS.gene025560.t1 | AT1G29980 | 40.882 | 340 | 191 | 2 | 34 | 363 | 43 | 382 | 4.69e-95 | 289 |
| MS.gene025560.t1 | AT2G34510 | 43.493 | 292 | 159 | 2 | 78 | 363 | 1 | 292 | 6.24e-85 | 260 |
| MS.gene025560.t1 | AT5G14150 | 27.320 | 388 | 234 | 14 | 1 | 367 | 1 | 361 | 1.76e-30 | 120 |
| MS.gene025560.t1 | AT5G14150 | 27.320 | 388 | 234 | 14 | 1 | 367 | 1 | 361 | 1.76e-30 | 120 |
Find 103 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCAAAATTGATGATTT+TGG | 0.110893 | 4.3:-60709917 | MS.gene025560:CDS |
| CTTTGAATCAATGAATTTAA+TGG | 0.135571 | 4.3:+60710228 | None:intergenic |
| ACTTCCAAAATCATCAATTT+TGG | 0.185567 | 4.3:+60709913 | None:intergenic |
| CCGTTGGTTGAGTTGAAAAT+AGG | 0.205531 | 4.3:+60710322 | None:intergenic |
| CCCTACTTGTGGTCCACTTT+TGG | 0.234226 | 4.3:-60711039 | MS.gene025560:CDS |
| GACACAAGATCTTGTTGTTT+TGG | 0.237874 | 4.3:+60710286 | None:intergenic |
| CCCTTTCCTAAAGATTTAAA+AGG | 0.249510 | 4.3:+60710016 | None:intergenic |
| TTCATGTTGTAGACTTTGTT+TGG | 0.314228 | 4.3:+60710121 | None:intergenic |
| GCATGAACACCATGTGATAC+TGG | 0.314343 | 4.3:+60711314 | None:intergenic |
| ACATGGTATGCTCTAATCTT+AGG | 0.324044 | 4.3:-60711236 | MS.gene025560:CDS |
| AATGAATTTAATGGCTTTGA+GGG | 0.333087 | 4.3:+60710237 | None:intergenic |
| CTTCTTGCATACCAGGGTTA+TGG | 0.338309 | 4.3:+60711063 | None:intergenic |
| TAGACCACTGGTTTCCCATT+TGG | 0.342054 | 4.3:+60711382 | None:intergenic |
| TGCTTTATGTACCCCGGGTT+CGG | 0.343187 | 4.3:+60711434 | None:intergenic |
| AGACCACTGGTTTCCCATTT+GGG | 0.363737 | 4.3:+60711383 | None:intergenic |
| CGTTGGTTGAGTTGAAAATA+GGG | 0.373480 | 4.3:+60710323 | None:intergenic |
| ATAAGGAAAATTTAAGCAAC+GGG | 0.373642 | 4.3:+60709854 | None:intergenic |
| TGTACCAGGTTTGACTTTGA+TGG | 0.385600 | 4.3:+60711256 | None:intergenic |
| CAAACACTTTATAGCATCAA+TGG | 0.391387 | 4.3:-60711140 | MS.gene025560:CDS |
| CAATGGTGATGTTATTGCTT+GGG | 0.406097 | 4.3:-60711123 | MS.gene025560:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.406784 | 4.3:-60710094 | MS.gene025560:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.3:-60711114 | MS.gene025560:CDS |
| CAATGAATTTAATGGCTTTG+AGG | 0.411192 | 4.3:+60710236 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.3:-60711176 | MS.gene025560:CDS |
| GACTTTGATGGTTTGTGAGA+TGG | 0.433465 | 4.3:+60711268 | None:intergenic |
| CATGGTTCATTACCTCTTGT+CGG | 0.436338 | 4.3:+60710981 | None:intergenic |
| CACATGGTGTTCATGCTGTT+AGG | 0.440194 | 4.3:-60711307 | MS.gene025560:CDS |
| GTAGGGTCTTCTTGCATACC+AGG | 0.445669 | 4.3:+60711056 | None:intergenic |
| GGAGCAGTGGAACTTGTTGC+AGG | 0.445825 | 4.3:-60710181 | MS.gene025560:CDS |
| ACTATAACTTGATCAAGAAC+CGG | 0.458438 | 4.3:+60709881 | None:intergenic |
| TTTCAAGTGCCATTTGGAAA+AGG | 0.459013 | 4.3:-60710202 | MS.gene025560:CDS |
| TACAACATGAAATTCACAAT+TGG | 0.459725 | 4.3:-60710109 | MS.gene025560:CDS |
| GCTGCTCAAAGTTCCCATTT+CGG | 0.460360 | 4.3:+60711459 | None:intergenic |
| CTTTGAGCAGCAACCGAACC+CGG | 0.462424 | 4.3:-60711447 | MS.gene025560:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.3:+60711338 | None:intergenic |
| GGAAACATGCACTTCCCAAA+TGG | 0.465244 | 4.3:-60711397 | MS.gene025560:CDS |
| GATCTTGTGTCTCCTCTCCC+TGG | 0.465625 | 4.3:-60710274 | MS.gene025560:CDS |
| TTGTGTCTCCTCTCCCTGGT+TGG | 0.465969 | 4.3:-60710270 | MS.gene025560:CDS |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.3:+60710990 | None:intergenic |
| ATCTTGAGCACAAGTTCTTG+TGG | 0.474361 | 4.3:+60711211 | None:intergenic |
| GAAACATGCACTTCCCAAAT+GGG | 0.476506 | 4.3:-60711396 | MS.gene025560:CDS |
| TGCTGCTTCAGCATTTGCTA+AGG | 0.479893 | 4.3:-60712227 | MS.gene025560:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.480847 | 4.3:+60710987 | None:intergenic |
| GCATTACCTTCTGGTGACCT+AGG | 0.482374 | 4.3:+60712199 | None:intergenic |
| AGTAAGAAACCCTGGCTTTG+AGG | 0.483634 | 4.3:-60710356 | MS.gene025560:CDS |
| CTTGTTTGCTTTATGTACCC+CGG | 0.485473 | 4.3:+60711428 | None:intergenic |
| AATGGACCTTCCTCAAAGCC+AGG | 0.503208 | 4.3:+60710346 | None:intergenic |
| ATCACTGGTGGGCCACAACC+TGG | 0.505369 | 4.3:-60711350 | MS.gene025560:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.507745 | 4.3:-60710103 | MS.gene025560:CDS |
| TTGTTTGCTTTATGTACCCC+GGG | 0.520778 | 4.3:+60711429 | None:intergenic |
| GGTGTTCATGCTGTTAGGCT+TGG | 0.526553 | 4.3:-60711302 | MS.gene025560:CDS |
| GTTGAGTTGAAAATAGGGAA+TGG | 0.535417 | 4.3:+60710328 | None:intergenic |
| AGTGGAACTTGTTGCAGGAA+GGG | 0.537973 | 4.3:-60710176 | MS.gene025560:CDS |
| CATGAACACCATGTGATACT+GGG | 0.540154 | 4.3:+60711315 | None:intergenic |
| AATAAGGAAAATTTAAGCAA+CGG | 0.544457 | 4.3:+60709853 | None:intergenic |
| CTAGTTGAGTATATCACTGG+TGG | 0.547165 | 4.3:-60711362 | MS.gene025560:CDS |
| CATAAAGCAAACAAGACTCA+TGG | 0.550047 | 4.3:-60711420 | MS.gene025560:CDS |
| ATAAAGCAAACAAGACTCAT+GGG | 0.550063 | 4.3:-60711419 | MS.gene025560:CDS |
| CAGTGGAACTTGTTGCAGGA+AGG | 0.550407 | 4.3:-60710177 | MS.gene025560:CDS |
| GGTCTAGTTGAGTATATCAC+TGG | 0.552750 | 4.3:-60711365 | MS.gene025560:CDS |
| ACTGGGAAGAACATGCCTCC+AGG | 0.554594 | 4.3:+60711332 | None:intergenic |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.3:+60710991 | None:intergenic |
| TCAATAATCCAACCAGGGAG+AGG | 0.555884 | 4.3:+60710262 | None:intergenic |
| CTATAACTTGATCAAGAACC+GGG | 0.557234 | 4.3:+60709882 | None:intergenic |
| TCAAAGTCAAACCTGGTACA+TGG | 0.559181 | 4.3:-60711253 | MS.gene025560:CDS |
| CAAACCATCAAAGTCAAACC+TGG | 0.562139 | 4.3:-60711260 | MS.gene025560:CDS |
| CATTACCTTCTGGTGACCTA+GGG | 0.562998 | 4.3:+60712200 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.563498 | 4.3:-60711122 | MS.gene025560:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.3:+60711026 | None:intergenic |
| GATGGAAGAAATGGATGTCA+TGG | 0.567802 | 4.3:-60710085 | MS.gene025560:CDS |
| ATGCTATAAAGTGTTTGCAA+AGG | 0.573282 | 4.3:+60711146 | None:intergenic |
| TTTGAGCAGCAACCGAACCC+GGG | 0.575437 | 4.3:-60711446 | MS.gene025560:CDS |
| CCAAAAGTGGACCACAAGTA+GGG | 0.578033 | 4.3:+60711039 | None:intergenic |
| ATTAGAGCATACCATGTACC+AGG | 0.580105 | 4.3:+60711242 | None:intergenic |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.3:-60710993 | MS.gene025560:intron |
| GATATACTCAACTAGACCAC+TGG | 0.583672 | 4.3:+60711370 | None:intergenic |
| TGGAGGAAGTATGACACCGT+TGG | 0.584730 | 4.3:+60710306 | None:intergenic |
| AGAAACCCTGGCTTTGAGGA+AGG | 0.589091 | 4.3:-60710352 | MS.gene025560:CDS |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.592376 | 4.3:-60710194 | MS.gene025560:CDS |
| TCAATGGTGATGTTATTGCT+TGG | 0.594334 | 4.3:-60711124 | MS.gene025560:CDS |
| GCTAATTTAGTAAGAAACCC+TGG | 0.594765 | 4.3:-60710364 | MS.gene025560:CDS |
| CATTTGCTAAGGTTCACCCT+AGG | 0.605861 | 4.3:-60712216 | MS.gene025560:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.607049 | 4.3:+60711038 | None:intergenic |
| ATGGACCTTCCTCAAAGCCA+GGG | 0.610936 | 4.3:+60710347 | None:intergenic |
| TGGATGTCATGGATCAATGA+TGG | 0.615968 | 4.3:-60710074 | MS.gene025560:CDS |
| AAAGTTACCTTCCATAACCC+TGG | 0.617417 | 4.3:-60711074 | MS.gene025560:CDS |
| AGGGATTCAATAATCCAACC+AGG | 0.617420 | 4.3:+60710256 | None:intergenic |
| TTGCATACCAGGGTTATGGA+AGG | 0.619234 | 4.3:+60711067 | None:intergenic |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.3:+60711164 | None:intergenic |
| TAGTTGAGTATATCACTGGT+GGG | 0.646961 | 4.3:-60711361 | MS.gene025560:CDS |
| ATGCAAGAAGACCCTACTTG+TGG | 0.657722 | 4.3:-60711050 | MS.gene025560:CDS |
| TGTTCTTAGAATCTGTGCAA+TGG | 0.657743 | 4.3:+60710147 | None:intergenic |
| TAGGGTCTTCTTGCATACCA+GGG | 0.661160 | 4.3:+60711057 | None:intergenic |
| AAGGAAAATTTAAGCAACGG+GGG | 0.666607 | 4.3:+60709856 | None:intergenic |
| TTGAGCAGCAACCGAACCCG+GGG | 0.669214 | 4.3:-60711445 | MS.gene025560:CDS |
| ATGTTCTTCCCAGTATCACA+TGG | 0.671872 | 4.3:-60711323 | MS.gene025560:CDS |
| CTTCCCAAATGGGAAACCAG+TGG | 0.684219 | 4.3:-60711386 | MS.gene025560:CDS |
| TAAAGCAAACAAGACTCATG+GGG | 0.692569 | 4.3:-60711418 | MS.gene025560:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.3:+60711167 | None:intergenic |
| GGGATTCAATAATCCAACCA+GGG | 0.702559 | 4.3:+60710257 | None:intergenic |
| GTTCACCCTAGGTCACCAGA+AGG | 0.709847 | 4.3:-60712205 | MS.gene025560:intron |
| ACTGGTGGGCCACAACCTGG+AGG | 0.722510 | 4.3:-60711347 | MS.gene025560:CDS |
| TAAGGAAAATTTAAGCAACG+GGG | 0.730270 | 4.3:+60709855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTAAAATTCTAGAT+TGG | - | chr4.3:60710164-60710183 | MS.gene025560:CDS | 10.0% |
| !! | AAGAAATGAAAGAAAAATAT+TGG | - | chr4.3:60710203-60710222 | MS.gene025560:CDS | 15.0% |
| !! | ATAATAATAAATTTGACGAA+TGG | - | chr4.3:60711583-60711602 | MS.gene025560:intron | 15.0% |
| !! | TATATATCTTCTTTAATGTT+GGG | - | chr4.3:60711695-60711714 | MS.gene025560:intron | 15.0% |
| !!! | AAATACTACTTTGATTATTT+TGG | - | chr4.3:60711330-60711349 | MS.gene025560:CDS | 15.0% |
| !!! | GATATAAACTTAATTTGTTA+AGG | - | chr4.3:60711656-60711675 | MS.gene025560:intron | 15.0% |
| !! | ATATATCTTCTTTAATGTTG+GGG | - | chr4.3:60711696-60711715 | MS.gene025560:intron | 20.0% |
| !! | ATCTATATTCGACTAAAAAT+TGG | - | chr4.3:60710226-60710245 | MS.gene025560:CDS | 20.0% |
| !! | CTATATATCTTCTTTAATGT+TGG | - | chr4.3:60711694-60711713 | MS.gene025560:intron | 20.0% |
| !! | CTTTGAATCAATGAATTTAA+TGG | + | chr4.3:60711911-60711930 | None:intergenic | 20.0% |
| !! | TATATAATAAGAAGTTGCAT+CGG | + | chr4.3:60710407-60710426 | None:intergenic | 20.0% |
| !! | TTCATATTAAATTGCTAACA+AGG | - | chr4.3:60710079-60710098 | MS.gene025560:CDS | 20.0% |
| !! | TTTCTCTCTTTAGTAAAAAT+TGG | + | chr4.3:60711384-60711403 | None:intergenic | 20.0% |
| !!! | AAAGTTCCTTTTAAATCTTT+AGG | - | chr4.3:60712114-60712133 | MS.gene025560:intron | 20.0% |
| !!! | ACATTGACTTTAGTAAAAAT+TGG | + | chr4.3:60711456-60711475 | None:intergenic | 20.0% |
| ! | TACAACATGAAATTCACAAT+TGG | - | chr4.3:60712027-60712046 | MS.gene025560:intron | 25.0% |
| ! | TCGACAAGTAAATATAATGT+CGG | - | chr4.3:60710470-60710489 | MS.gene025560:intron | 25.0% |
| ! | TGTTTCATTGTTTGAATCTA+AGG | - | chr4.3:60710003-60710022 | MS.gene025560:CDS | 25.0% |
| !! | ACAATTGGATTTGTTTAGAT+AGG | + | chr4.3:60711224-60711243 | None:intergenic | 25.0% |
| !! | ACTTCCAAAATCATCAATTT+TGG | + | chr4.3:60712226-60712245 | None:intergenic | 25.0% |
| !! | ATGAATGATAGTGTAATGTT+TGG | + | chr4.3:60710307-60710326 | None:intergenic | 25.0% |
| !! | TTAAAGTTTTCTTCCGAAAT+GGG | - | chr4.3:60710664-60710683 | MS.gene025560:intron | 25.0% |
| !!! | AATGAATTTAATGGCTTTGA+GGG | + | chr4.3:60711902-60711921 | None:intergenic | 25.0% |
| !!! | ACAAATCCAATTGTTTTTGT+TGG | - | chr4.3:60711230-60711249 | MS.gene025560:CDS | 25.0% |
| !!! | CATACCAAAATTGATGATTT+TGG | - | chr4.3:60712219-60712238 | MS.gene025560:CDS | 25.0% |
| !!! | CCTTTTAAATCTTTAGGAAA+GGG | - | chr4.3:60712120-60712139 | MS.gene025560:intron | 25.0% |
| !!! | TCCTTTTAAATCTTTAGGAA+AGG | - | chr4.3:60712119-60712138 | MS.gene025560:intron | 25.0% |
| ACTATAACTTGATCAAGAAC+CGG | + | chr4.3:60712258-60712277 | None:intergenic | 30.0% | |
| ATAAAGCAAACAAGACTCAT+GGG | - | chr4.3:60710717-60710736 | MS.gene025560:intron | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.3:60712033-60712052 | MS.gene025560:intron | 30.0% | |
| CAAACACTTTATAGCATCAA+TGG | - | chr4.3:60710996-60711015 | MS.gene025560:CDS | 30.0% | |
| CATTTCGGAAGAAAACTTTA+AGG | + | chr4.3:60710665-60710684 | None:intergenic | 30.0% | |
| CCCTTTCCTAAAGATTTAAA+AGG | + | chr4.3:60712123-60712142 | None:intergenic | 30.0% | |
| CGACAAGTAAATATAATGTC+GGG | - | chr4.3:60710471-60710490 | MS.gene025560:intron | 30.0% | |
| CTAACTCACATATCTACTTT+AGG | - | chr4.3:60711283-60711302 | MS.gene025560:CDS | 30.0% | |
| TCTAAACTGTCAAGATATGA+AGG | + | chr4.3:60710359-60710378 | None:intergenic | 30.0% | |
| TCTAGTCCAACAAAAACAAT+TGG | + | chr4.3:60711239-60711258 | None:intergenic | 30.0% | |
| TGATATAGAGAAGAATGAAG+TGG | - | chr4.3:60710131-60710150 | MS.gene025560:CDS | 30.0% | |
| TTCATGTTGTAGACTTTGTT+TGG | + | chr4.3:60712018-60712037 | None:intergenic | 30.0% | |
| ! | ATGCTATAAAGTGTTTGCAA+AGG | + | chr4.3:60710993-60711012 | None:intergenic | 30.0% |
| ! | ATTTTACAAGTGTCTCTAAG+TGG | - | chr4.3:60711634-60711653 | MS.gene025560:intron | 30.0% |
| ! | CAATGAATTTAATGGCTTTG+AGG | + | chr4.3:60711903-60711922 | None:intergenic | 30.0% |
| ! | CTTAAAGTTTTCTTCCGAAA+TGG | - | chr4.3:60710663-60710682 | MS.gene025560:intron | 30.0% |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.3:60712042-60712061 | MS.gene025560:intron | 35.0% | |
| ACATGGTATGCTCTAATCTT+AGG | - | chr4.3:60710900-60710919 | MS.gene025560:intron | 35.0% | |
| AGAATCAGGATTCATTGACA+TGG | + | chr4.3:60711176-60711195 | None:intergenic | 35.0% | |
| ATGTGCTTATTGAAGTTGCT+AGG | - | chr4.3:60710535-60710554 | MS.gene025560:intron | 35.0% | |
| CATAAAGCAAACAAGACTCA+TGG | - | chr4.3:60710716-60710735 | MS.gene025560:intron | 35.0% | |
| CTATAACTTGATCAAGAACC+GGG | + | chr4.3:60712257-60712276 | None:intergenic | 35.0% | |
| GCTAATTTAGTAAGAAACCC+TGG | - | chr4.3:60711772-60711791 | MS.gene025560:intron | 35.0% | |
| TAAAGCAAACAAGACTCATG+GGG | - | chr4.3:60710718-60710737 | MS.gene025560:intron | 35.0% | |
| TAGTTGAGTATATCACTGGT+GGG | - | chr4.3:60710775-60710794 | MS.gene025560:intron | 35.0% | |
| TGTTCTTAGAATCTGTGCAA+TGG | + | chr4.3:60711992-60712011 | None:intergenic | 35.0% | |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.3:60711014-60711033 | MS.gene025560:CDS | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.3:60711013-60711032 | MS.gene025560:CDS | 35.0% |
| ! | CCTATTTTCAACTCAACCAA+CGG | - | chr4.3:60711814-60711833 | MS.gene025560:intron | 35.0% |
| ! | GGATTTGTTTAGATAGGACT+CGG | + | chr4.3:60711218-60711237 | None:intergenic | 35.0% |
| ! | GTTTGGAACAAATCTGCATT+AGG | + | chr4.3:60710290-60710309 | None:intergenic | 35.0% |
| ! | TAATGTTGGGGTTTGTGTTT+TGG | - | chr4.3:60711708-60711727 | MS.gene025560:intron | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.3:60711012-60711031 | MS.gene025560:CDS | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATA+GGG | + | chr4.3:60711816-60711835 | None:intergenic | 35.0% |
| !! | GATGATTTTGGAAGTATGTG+TGG | - | chr4.3:60712231-60712250 | MS.gene025560:CDS | 35.0% |
| !! | GTTGAGTTGAAAATAGGGAA+TGG | + | chr4.3:60711811-60711830 | None:intergenic | 35.0% |
| !! | TTTCAAGTGCCATTTGGAAA+AGG | - | chr4.3:60711934-60711953 | MS.gene025560:intron | 35.0% |
| !!! | AAGCATTTTCAAGTGCCATT+TGG | - | chr4.3:60711928-60711947 | MS.gene025560:intron | 35.0% |
| !!! | ACAAGATCTTGTTGTTTTGG+AGG | + | chr4.3:60711850-60711869 | None:intergenic | 35.0% |
| !!! | GACACAAGATCTTGTTGTTT+TGG | + | chr4.3:60711853-60711872 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.3:60710975-60710994 | None:intergenic | 40.0% | |
| AAAGTTACCTTCCATAACCC+TGG | - | chr4.3:60711062-60711081 | MS.gene025560:CDS | 40.0% | |
| AATGAATCCTGATTCTCTGC+AGG | - | chr4.3:60711180-60711199 | MS.gene025560:CDS | 40.0% | |
| AGGGATTCAATAATCCAACC+AGG | + | chr4.3:60711883-60711902 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.3:60711113-60711132 | None:intergenic | 40.0% | |
| ATCTTGAGCACAAGTTCTTG+TGG | + | chr4.3:60710928-60710947 | None:intergenic | 40.0% | |
| ATGAATCCTGATTCTCTGCA+GGG | - | chr4.3:60711181-60711200 | MS.gene025560:CDS | 40.0% | |
| ATGTTCTTCCCAGTATCACA+TGG | - | chr4.3:60710813-60710832 | MS.gene025560:intron | 40.0% | |
| ATTAGAGCATACCATGTACC+AGG | + | chr4.3:60710897-60710916 | None:intergenic | 40.0% | |
| CAAACCATCAAAGTCAAACC+TGG | - | chr4.3:60710876-60710895 | MS.gene025560:intron | 40.0% | |
| CATGAACACCATGTGATACT+GGG | + | chr4.3:60710824-60710843 | None:intergenic | 40.0% | |
| CATGGTTCATTACCTCTTGT+CGG | + | chr4.3:60711158-60711177 | None:intergenic | 40.0% | |
| CTAGTTGAGTATATCACTGG+TGG | - | chr4.3:60710774-60710793 | MS.gene025560:intron | 40.0% | |
| CTTGTTTGCTTTATGTACCC+CGG | + | chr4.3:60710711-60710730 | None:intergenic | 40.0% | |
| GAAACATGCACTTCCCAAAT+GGG | - | chr4.3:60710740-60710759 | MS.gene025560:intron | 40.0% | |
| GATATACTCAACTAGACCAC+TGG | + | chr4.3:60710769-60710788 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGATGTCA+TGG | - | chr4.3:60712051-60712070 | MS.gene025560:intron | 40.0% | |
| GGGATTCAATAATCCAACCA+GGG | + | chr4.3:60711882-60711901 | None:intergenic | 40.0% | |
| GGTCTAGTTGAGTATATCAC+TGG | - | chr4.3:60710771-60710790 | MS.gene025560:intron | 40.0% | |
| TAGAGTTGAGCATTACCTTC+TGG | + | chr4.3:60709949-60709968 | None:intergenic | 40.0% | |
| TCAAAGTCAAACCTGGTACA+TGG | - | chr4.3:60710883-60710902 | MS.gene025560:intron | 40.0% | |
| TGGATGTCATGGATCAATGA+TGG | - | chr4.3:60712062-60712081 | MS.gene025560:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.3:60711022-60711041 | MS.gene025560:CDS | 40.0% | |
| TTGTTTGCTTTATGTACCCC+GGG | + | chr4.3:60710710-60710729 | None:intergenic | 40.0% | |
| ! | ATAAGAAGTTGCATCGGTGT+CGG | + | chr4.3:60710401-60710420 | None:intergenic | 40.0% |
| ! | GACTTTGATGGTTTGTGAGA+TGG | + | chr4.3:60710871-60710890 | None:intergenic | 40.0% |
| ! | TGTACCAGGTTTGACTTTGA+TGG | + | chr4.3:60710883-60710902 | None:intergenic | 40.0% |
| !! | CCGTTGGTTGAGTTGAAAAT+AGG | + | chr4.3:60711817-60711836 | None:intergenic | 40.0% |
| !! | GTGCTGTTCTGATTTTGCTT+TGG | - | chr4.3:60710632-60710651 | MS.gene025560:intron | 40.0% |
| ATGCAAGAAGACCCTACTTG+TGG | - | chr4.3:60711086-60711105 | MS.gene025560:CDS | 45.0% | |
| CACATGGTGTTCATGCTGTT+AGG | - | chr4.3:60710829-60710848 | MS.gene025560:intron | 45.0% | |
| CATTACCTTCTGGTGACCTA+GGG | + | chr4.3:60709939-60709958 | None:intergenic | 45.0% | |
| CCAAAAGTGGACCACAAGTA+GGG | + | chr4.3:60711100-60711119 | None:intergenic | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | + | chr4.3:60711076-60711095 | None:intergenic | 45.0% | |
| GCATGAACACCATGTGATAC+TGG | + | chr4.3:60710825-60710844 | None:intergenic | 45.0% | |
| GCTGCTCAAAGTTCCCATTT+CGG | + | chr4.3:60710680-60710699 | None:intergenic | 45.0% | |
| GGAAACATGCACTTCCCAAA+TGG | - | chr4.3:60710739-60710758 | MS.gene025560:intron | 45.0% | |
| TAGGGTCTTCTTGCATACCA+GGG | + | chr4.3:60711082-60711101 | None:intergenic | 45.0% | |
| TCAATAATCCAACCAGGGAG+AGG | + | chr4.3:60711877-60711896 | None:intergenic | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4.3:60711152-60711171 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.3:60711101-60711120 | None:intergenic | 45.0% | |
| TTGCATACCAGGGTTATGGA+AGG | + | chr4.3:60711072-60711091 | None:intergenic | 45.0% | |
| ! | CATTTGCTAAGGTTCACCCT+AGG | - | chr4.3:60709920-60709939 | MS.gene025560:CDS | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4.3:60711946-60711965 | None:intergenic | 45.0% |
| ! | TGCTGCTTCAGCATTTGCTA+AGG | - | chr4.3:60709909-60709928 | MS.gene025560:CDS | 45.0% |
| !! | AGACCACTGGTTTCCCATTT+GGG | + | chr4.3:60710756-60710775 | None:intergenic | 45.0% |
| !! | AGTAAGAAACCCTGGCTTTG+AGG | - | chr4.3:60711780-60711799 | MS.gene025560:intron | 45.0% |
| !! | AGTGGAACTTGTTGCAGGAA+GGG | - | chr4.3:60711960-60711979 | MS.gene025560:intron | 45.0% |
| !! | TAGACCACTGGTTTCCCATT+TGG | + | chr4.3:60710757-60710776 | None:intergenic | 45.0% |
| !! | TTTTGGAAGTATGTGTGGCC+CGG | - | chr4.3:60712236-60712255 | MS.gene025560:CDS | 45.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.3:60710801-60710820 | None:intergenic | 50.0% | |
| AATGGACCTTCCTCAAAGCC+AGG | + | chr4.3:60711793-60711812 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.3:60710960-60710979 | MS.gene025560:intron | 50.0% | |
| ATGGACCTTCCTCAAAGCCA+GGG | + | chr4.3:60711792-60711811 | None:intergenic | 50.0% | |
| CTTCCCAAATGGGAAACCAG+TGG | - | chr4.3:60710750-60710769 | MS.gene025560:intron | 50.0% | |
| GAGAAGAATGAAGTGGCGCT+AGG | - | chr4.3:60710138-60710157 | MS.gene025560:CDS | 50.0% | |
| GCATTACCTTCTGGTGACCT+AGG | + | chr4.3:60709940-60709959 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4.3:60711942-60711961 | MS.gene025560:intron | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.3:60710972-60710991 | None:intergenic | 50.0% | |
| GGTGTTCATGCTGTTAGGCT+TGG | - | chr4.3:60710834-60710853 | MS.gene025560:intron | 50.0% | |
| GTAGGGTCTTCTTGCATACC+AGG | + | chr4.3:60711083-60711102 | None:intergenic | 50.0% | |
| TGCTTTATGTACCCCGGGTT+CGG | + | chr4.3:60710705-60710724 | None:intergenic | 50.0% | |
| TTCTCTGCAGGGCATGCAAT+TGG | - | chr4.3:60711192-60711211 | MS.gene025560:CDS | 50.0% | |
| ! | CCCTACTTGTGGTCCACTTT+TGG | - | chr4.3:60711097-60711116 | MS.gene025560:CDS | 50.0% |
| ! | TGGAGGAAGTATGACACCGT+TGG | + | chr4.3:60711833-60711852 | None:intergenic | 50.0% |
| !! | AGAAACCCTGGCTTTGAGGA+AGG | - | chr4.3:60711784-60711803 | MS.gene025560:intron | 50.0% |
| !! | CAGTGGAACTTGTTGCAGGA+AGG | - | chr4.3:60711959-60711978 | MS.gene025560:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.3:60710807-60710826 | None:intergenic | 55.0% | |
| CTTTGAGCAGCAACCGAACC+CGG | - | chr4.3:60710689-60710708 | MS.gene025560:intron | 55.0% | |
| GATCTTGTGTCTCCTCTCCC+TGG | - | chr4.3:60711862-60711881 | MS.gene025560:intron | 55.0% | |
| GTTCACCCTAGGTCACCAGA+AGG | - | chr4.3:60709931-60709950 | MS.gene025560:CDS | 55.0% | |
| TGCATGCCCTGCAGAGAATC+AGG | + | chr4.3:60711190-60711209 | None:intergenic | 55.0% | |
| TTGTGTCTCCTCTCCCTGGT+TGG | - | chr4.3:60711866-60711885 | MS.gene025560:intron | 55.0% | |
| TTTGAGCAGCAACCGAACCC+GGG | - | chr4.3:60710690-60710709 | MS.gene025560:intron | 55.0% | |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.3:60711148-60711167 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.3:60711149-60711168 | None:intergenic | 55.0% |
| !! | GGAGCAGTGGAACTTGTTGC+AGG | - | chr4.3:60711955-60711974 | MS.gene025560:intron | 55.0% |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4.3:60711143-60711162 | MS.gene025560:CDS | 60.0% | |
| TTGAGCAGCAACCGAACCCG+GGG | - | chr4.3:60710691-60710710 | MS.gene025560:intron | 60.0% | |
| ! | ATCACTGGTGGGCCACAACC+TGG | - | chr4.3:60710786-60710805 | MS.gene025560:intron | 60.0% |
| ! | ACTGGTGGGCCACAACCTGG+AGG | - | chr4.3:60710789-60710808 | MS.gene025560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 60709865 | 60712293 | 60709865 | ID=MS.gene025560 |
| chr4.3 | mRNA | 60709865 | 60712293 | 60709865 | ID=MS.gene025560.t1;Parent=MS.gene025560 |
| chr4.3 | exon | 60712206 | 60712293 | 60712206 | ID=MS.gene025560.t1.exon1;Parent=MS.gene025560.t1 |
| chr4.3 | CDS | 60712206 | 60712293 | 60712206 | ID=cds.MS.gene025560.t1;Parent=MS.gene025560.t1 |
| chr4.3 | exon | 60710994 | 60711488 | 60710994 | ID=MS.gene025560.t1.exon2;Parent=MS.gene025560.t1 |
| chr4.3 | CDS | 60710994 | 60711488 | 60710994 | ID=cds.MS.gene025560.t1;Parent=MS.gene025560.t1 |
| chr4.3 | exon | 60709865 | 60710385 | 60709865 | ID=MS.gene025560.t1.exon3;Parent=MS.gene025560.t1 |
| chr4.3 | CDS | 60709865 | 60710385 | 60709865 | ID=cds.MS.gene025560.t1;Parent=MS.gene025560.t1 |
| Gene Sequence |
| Protein sequence |
