Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60267.t1 | AAB41813.1 | 100 | 374 | 0 | 0 | 1 | 374 | 1 | 374 | 7.10E-213 | 749.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60267.t1 | Q43557 | 100.0 | 374 | 0 | 0 | 1 | 374 | 1 | 374 | 5.1e-213 | 749.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050767 | MS.gene60267 | 0.829049 | 6.40E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene60267 | 0.828817 | 7.28E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene60267 | 0.811944 | 5.43E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene60267 | 0.820762 | 5.78E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene60267 | 0.839919 | 1.19E-57 | -1.69E-46 |
| MS.gene054802 | MS.gene60267 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene054803 | MS.gene60267 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene60267 | 0.801225 | 9.96E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene60267 | 0.814436 | 1.54E-51 | -1.69E-46 |
| MS.gene059228 | MS.gene60267 | 0.832028 | 1.19E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene60267 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene060005 | MS.gene60267 | 0.834578 | 2.76E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60267 | MS.gene46636 | PPI |
| MS.gene60267 | MS.gene025564 | PPI |
| MS.gene025560 | MS.gene60267 | PPI |
| MS.gene60267 | MS.gene92701 | PPI |
| MS.gene60267 | MS.gene73994 | PPI |
| MS.gene60267 | MS.gene025561 | PPI |
| MS.gene60267 | MS.gene73511 | PPI |
| MS.gene60267 | MS.gene73510 | PPI |
| MS.gene60267 | MS.gene73995 | PPI |
| MS.gene60267 | MS.gene73993 | PPI |
| MS.gene60267 | MS.gene91871 | PPI |
| MS.gene60267 | MS.gene74384 | PPI |
| MS.gene60267 | MS.gene73512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60267.t1 | MTR_1g011800 | 98.391 | 373 | 6 | 0 | 3 | 375 | 4 | 376 | 0.0 | 756 |
| MS.gene60267.t1 | MTR_2g103170 | 67.027 | 370 | 116 | 2 | 11 | 375 | 1 | 369 | 0.0 | 514 |
| MS.gene60267.t1 | MTR_0045s0110 | 56.325 | 332 | 143 | 2 | 36 | 367 | 32 | 361 | 1.07e-132 | 384 |
| MS.gene60267.t1 | MTR_4g039680 | 52.676 | 355 | 164 | 4 | 15 | 367 | 9 | 361 | 2.55e-131 | 380 |
| MS.gene60267.t1 | MTR_4g039720 | 52.394 | 355 | 165 | 3 | 15 | 367 | 13 | 365 | 1.60e-130 | 379 |
| MS.gene60267.t1 | MTR_4g039740 | 52.394 | 355 | 165 | 3 | 15 | 367 | 9 | 361 | 2.71e-129 | 375 |
| MS.gene60267.t1 | MTR_2g019600 | 46.797 | 359 | 185 | 3 | 13 | 369 | 11 | 365 | 1.93e-120 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60267.t1 | AT5G11420 | 74.722 | 360 | 90 | 1 | 16 | 375 | 8 | 366 | 0.0 | 574 |
| MS.gene60267.t1 | AT5G25460 | 74.444 | 360 | 88 | 2 | 19 | 375 | 11 | 369 | 0.0 | 568 |
| MS.gene60267.t1 | AT4G32460 | 74.510 | 357 | 90 | 1 | 19 | 375 | 10 | 365 | 0.0 | 561 |
| MS.gene60267.t1 | AT4G32460 | 74.510 | 357 | 90 | 1 | 19 | 375 | 10 | 365 | 0.0 | 561 |
| MS.gene60267.t1 | AT4G32460 | 76.687 | 326 | 75 | 1 | 50 | 375 | 1 | 325 | 0.0 | 530 |
| MS.gene60267.t1 | AT4G32460 | 76.687 | 326 | 75 | 1 | 50 | 375 | 1 | 325 | 0.0 | 530 |
| MS.gene60267.t1 | AT1G80240 | 63.793 | 348 | 125 | 1 | 27 | 374 | 21 | 367 | 2.04e-165 | 467 |
| MS.gene60267.t1 | AT3G08030 | 55.224 | 335 | 149 | 1 | 33 | 367 | 26 | 359 | 1.94e-132 | 384 |
| MS.gene60267.t1 | AT2G41810 | 50.543 | 368 | 173 | 3 | 11 | 370 | 1 | 367 | 1.23e-128 | 374 |
| MS.gene60267.t1 | AT2G41800 | 51.754 | 342 | 164 | 1 | 32 | 373 | 30 | 370 | 2.06e-127 | 371 |
| MS.gene60267.t1 | AT3G08030 | 55.660 | 318 | 140 | 1 | 50 | 367 | 1 | 317 | 3.17e-126 | 366 |
| MS.gene60267.t1 | AT1G29980 | 50.000 | 346 | 163 | 3 | 33 | 369 | 38 | 382 | 1.04e-120 | 355 |
| MS.gene60267.t1 | AT1G29980 | 49.855 | 345 | 163 | 3 | 34 | 369 | 3 | 346 | 2.75e-120 | 353 |
| MS.gene60267.t1 | AT2G34510 | 48.246 | 342 | 171 | 2 | 33 | 369 | 38 | 378 | 1.67e-116 | 344 |
| MS.gene60267.t1 | AT2G34510 | 48.630 | 292 | 145 | 1 | 83 | 369 | 1 | 292 | 1.69e-102 | 305 |
| MS.gene60267.t1 | AT5G14150 | 27.957 | 372 | 227 | 13 | 13 | 367 | 8 | 355 | 1.77e-36 | 136 |
| MS.gene60267.t1 | AT5G14150 | 27.957 | 372 | 227 | 13 | 13 | 367 | 8 | 355 | 1.77e-36 | 136 |
Find 80 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTGTTGCTCCTGATTT+TGG | 0.209026 | 1.1:-8773943 | MS.gene60267:CDS |
| CCTTTACCTTTGGATGAATA+AGG | 0.215858 | 1.1:+8771020 | None:intergenic |
| TTATTGATTCTGTTGCTCTT+AGG | 0.255935 | 1.1:-8773786 | MS.gene60267:CDS |
| GATGATCTTTCTTCTCTTTG+TGG | 0.265277 | 1.1:-8770909 | MS.gene60267:CDS |
| AAACCTGATATTTCCCATTC+TGG | 0.280562 | 1.1:+8774150 | None:intergenic |
| GGTTGGGATCCAATTGCTTA+TGG | 0.285735 | 1.1:-8773886 | MS.gene60267:CDS |
| TGAATGGTCATCTTCTATAT+TGG | 0.308808 | 1.1:+8771289 | None:intergenic |
| CAAAGAATAAAAGTGATTAA+AGG | 0.309159 | 1.1:-8774027 | MS.gene60267:CDS |
| CCAAAACCATCAGAGCTAAA+AGG | 0.348443 | 1.1:-8774204 | MS.gene60267:CDS |
| TGCTGGTAAAGACACAATTA+AGG | 0.351879 | 1.1:-8771045 | MS.gene60267:CDS |
| TTTGAATCCACCTTTACCTT+TGG | 0.354730 | 1.1:+8771010 | None:intergenic |
| CACTTAAGTTTGTAGCTGTT+GGG | 0.356396 | 1.1:-8770980 | MS.gene60267:CDS |
| CACTTACTATTAGAAGCTTT+AGG | 0.364523 | 1.1:+8773751 | None:intergenic |
| GAATGGTCATCTTCTATATT+GGG | 0.367423 | 1.1:+8771290 | None:intergenic |
| ATCACTCCATATGATGTGTT+AGG | 0.384394 | 1.1:+8771320 | None:intergenic |
| CTCACTGCATATGCACCTTC+TGG | 0.384872 | 1.1:+8774075 | None:intergenic |
| GTCTCCCTCTCACTCATTGA+TGG | 0.401514 | 1.1:-8776542 | MS.gene60267:intron |
| ATACCAGAATGGGAAATATC+AGG | 0.401676 | 1.1:-8774153 | MS.gene60267:CDS |
| GCTTTAAAACCATAAGCAAT+TGG | 0.419076 | 1.1:+8773877 | None:intergenic |
| CTAAAAGGAACAGTGGTAAC+TGG | 0.422716 | 1.1:-8774189 | MS.gene60267:CDS |
| GCACTTAAGTTTGTAGCTGT+TGG | 0.424811 | 1.1:-8770981 | MS.gene60267:CDS |
| CTTGTATACAATGTTTGTAT+AGG | 0.425750 | 1.1:+8773913 | None:intergenic |
| AACTTGACATCATCAATAAC+AGG | 0.428308 | 1.1:+8770885 | None:intergenic |
| TGAATATGATGTTGTTGAAA+TGG | 0.433098 | 1.1:-8773854 | MS.gene60267:CDS |
| ATATTCCCTAACACATCATA+TGG | 0.435096 | 1.1:-8771326 | MS.gene60267:CDS |
| AAGGATTCTACCATCCATCC+TGG | 0.450439 | 1.1:+8771260 | None:intergenic |
| TGTACAGGACTAGTGGCAAA+TGG | 0.453001 | 1.1:-8774243 | MS.gene60267:intron |
| TTAGTAGAATACATAAAATC+AGG | 0.457389 | 1.1:-8774129 | MS.gene60267:CDS |
| CTTAGCGTGCGTAAACCATA+AGG | 0.460821 | 1.1:-8770861 | None:intergenic |
| TCCATCCTGGGAGGGGTGAA+TGG | 0.464160 | 1.1:+8771273 | None:intergenic |
| CAAGTTGCTAGAACAATTCC+AGG | 0.464538 | 1.1:-8771143 | MS.gene60267:CDS |
| ATAGGAATAACACCAAAATC+AGG | 0.482295 | 1.1:+8773931 | None:intergenic |
| CATAAACAAGAACACATTCA+TGG | 0.495034 | 1.1:+8776592 | None:intergenic |
| TCTACTGCTCTTGTGCCTTG+TGG | 0.498859 | 1.1:+8771197 | None:intergenic |
| CCTTATTCATCCAAAGGTAA+AGG | 0.506212 | 1.1:-8771020 | MS.gene60267:CDS |
| ATTGTATACAAGTAGTGGTT+GGG | 0.508907 | 1.1:-8773902 | MS.gene60267:CDS |
| TCAATAAGAGGTCCACAAGC+AGG | 0.514610 | 1.1:+8773802 | None:intergenic |
| CAATGAGTGAGAGGGAGACA+TGG | 0.518955 | 1.1:+8776546 | None:intergenic |
| TCACTCCATATGATGTGTTA+GGG | 0.524767 | 1.1:+8771321 | None:intergenic |
| GTACAGGACTAGTGGCAAAT+GGG | 0.532908 | 1.1:-8774242 | MS.gene60267:intron |
| TCTACCATCCATCCTGGGAG+GGG | 0.534305 | 1.1:+8771266 | None:intergenic |
| AAGGTTCCTTATTCATCCAA+AGG | 0.534346 | 1.1:-8771026 | MS.gene60267:CDS |
| TAGCTGTTGGGACAAGAACA+AGG | 0.536783 | 1.1:-8770968 | MS.gene60267:CDS |
| CATTGTATACAAGTAGTGGT+TGG | 0.537679 | 1.1:-8773903 | MS.gene60267:CDS |
| AGAGCAACAGAATCAATAAG+AGG | 0.543262 | 1.1:+8773790 | None:intergenic |
| TGAGAGGGAGACATGGAAAG+TGG | 0.555486 | 1.1:+8776553 | None:intergenic |
| GATGTGTTAGGGAATATATA+AGG | 0.557138 | 1.1:+8771332 | None:intergenic |
| TTACTATTAGAAGCTTTAGG+AGG | 0.557212 | 1.1:+8773754 | None:intergenic |
| GAAATGGTTATTCATAATCC+TGG | 0.558117 | 1.1:-8773838 | MS.gene60267:CDS |
| CTGAGAAATGACCTGAGTCT+AGG | 0.559607 | 1.1:+8771222 | None:intergenic |
| ACCATTCACCCCTCCCAGGA+TGG | 0.561579 | 1.1:-8771274 | MS.gene60267:CDS |
| TTCACCCCTCCCAGGATGGA+TGG | 0.564481 | 1.1:-8771270 | MS.gene60267:CDS |
| TTCTACCATCCATCCTGGGA+GGG | 0.568707 | 1.1:+8771265 | None:intergenic |
| TGGTCATCTTCTATATTGGG+TGG | 0.571757 | 1.1:+8771293 | None:intergenic |
| CACAAGAGCAGTAGAACTAG+TGG | 0.572866 | 1.1:-8771189 | MS.gene60267:CDS |
| AGGATTCTACCATCCATCCT+GGG | 0.576477 | 1.1:+8771261 | None:intergenic |
| TATTCATCCAAAGGTAAAGG+TGG | 0.579509 | 1.1:-8771017 | MS.gene60267:CDS |
| CAAACATTGTATACAAGTAG+TGG | 0.588966 | 1.1:-8773907 | MS.gene60267:CDS |
| GATGACCATTCACCCCTCCC+AGG | 0.591765 | 1.1:-8771278 | MS.gene60267:CDS |
| GGTCATCTTCTATATTGGGT+GGG | 0.591855 | 1.1:+8771294 | None:intergenic |
| AGAGCAGTAGAACTAGTGGC+AGG | 0.596449 | 1.1:-8771185 | MS.gene60267:CDS |
| GGTGCATATGCAGTGAGACT+AGG | 0.601052 | 1.1:-8774069 | MS.gene60267:CDS |
| ACTTACCATCAATGAGTGAG+AGG | 0.604105 | 1.1:+8776537 | None:intergenic |
| GCAGGATCTTCTTCAACACC+AGG | 0.604121 | 1.1:+8773820 | None:intergenic |
| TGATATTTGTACAGGACTAG+TGG | 0.607209 | 1.1:-8774250 | MS.gene60267:intron |
| GCAGTAAAATACCTAGACTC+AGG | 0.607558 | 1.1:-8771233 | MS.gene60267:CDS |
| GTTGAAGAAGATCCTGCTTG+TGG | 0.629496 | 1.1:-8773814 | MS.gene60267:CDS |
| CTTACCATCAATGAGTGAGA+GGG | 0.634839 | 1.1:+8776538 | None:intergenic |
| GAAAGTGGAACAGAAGAGCA+AGG | 0.650552 | 1.1:+8776568 | None:intergenic |
| ATCAGAGCTAAAAGGAACAG+TGG | 0.653099 | 1.1:-8774196 | MS.gene60267:CDS |
| GATGCAAGTAATTCATGTGA+AGG | 0.655767 | 1.1:-8771089 | MS.gene60267:CDS |
| CATCACCAACTGAAAATGAG+AGG | 0.658666 | 1.1:+8771108 | None:intergenic |
| AACTGAAAATGAGAGGACAT+AGG | 0.664170 | 1.1:+8771115 | None:intergenic |
| GGTCATTTCTCAGTTCCACA+AGG | 0.665974 | 1.1:-8771212 | MS.gene60267:CDS |
| ATGTTACTAGTTGTACCAGA+AGG | 0.668517 | 1.1:-8774090 | MS.gene60267:CDS |
| AAAGGAACAGTGGTAACTGG+AGG | 0.683482 | 1.1:-8774186 | MS.gene60267:CDS |
| ATTCTACCATCCATCCTGGG+AGG | 0.697643 | 1.1:+8771264 | None:intergenic |
| TAAAGGTGGATTCAAACGTG+CGG | 0.707257 | 1.1:-8771003 | MS.gene60267:CDS |
| AGCTGTTGGGACAAGAACAA+GGG | 0.708580 | 1.1:-8770967 | MS.gene60267:CDS |
| AAACAAGAACACATTCATGG+TGG | 0.732804 | 1.1:+8776595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAGGATATAATAA+TGG | - | chr1.1:8775518-8775537 | MS.gene60267:intron | 10.0% |
| !!! | ATAAAACAGTTTTATATTAT+TGG | - | chr1.1:8772586-8772605 | MS.gene60267:intron | 10.0% |
| !!! | ATTTTGAGAAAAATAAAAAA+CGG | - | chr1.1:8775584-8775603 | MS.gene60267:intron | 10.0% |
| !!! | TTGTTTTTTTTTTTAAGTTT+TGG | - | chr1.1:8773073-8773092 | MS.gene60267:intron | 10.0% |
| !! | AAAAATACAAATAATTTGAC+TGG | + | chr1.1:8772051-8772070 | None:intergenic | 15.0% |
| !! | AAACATAATAAATGTTGTAT+TGG | - | chr1.1:8775543-8775562 | MS.gene60267:intron | 15.0% |
| !! | ATATTAATGTATATATACAC+AGG | - | chr1.1:8775281-8775300 | MS.gene60267:intron | 15.0% |
| !! | GTATTTAAAAATAGAAATGA+TGG | - | chr1.1:8771722-8771741 | MS.gene60267:intron | 15.0% |
| !! | TAATACTCATAAATCTATTT+AGG | - | chr1.1:8773803-8773822 | MS.gene60267:CDS | 15.0% |
| !! | TATTAATGTATATATACACA+GGG | - | chr1.1:8775282-8775301 | MS.gene60267:intron | 15.0% |
| !! | TGAAATTATTGCAAAAATTA+CGG | + | chr1.1:8771626-8771645 | None:intergenic | 15.0% |
| !!! | AGACATTATTCTATTTTTAA+GGG | + | chr1.1:8775832-8775851 | None:intergenic | 15.0% |
| !!! | CTAATTTGATTTTTTTTGAA+AGG | - | chr1.1:8772818-8772837 | MS.gene60267:intron | 15.0% |
| !!! | GTATTATTCAATAACTTTTA+TGG | - | chr1.1:8773482-8773501 | MS.gene60267:intron | 15.0% |
| !!! | TAAGTGTTTAAGTTAAAATA+AGG | - | chr1.1:8773901-8773920 | MS.gene60267:CDS | 15.0% |
| !!! | TACTACTTTTATGTAAAAAT+TGG | + | chr1.1:8771930-8771949 | None:intergenic | 15.0% |
| !!! | TAGACATTATTCTATTTTTA+AGG | + | chr1.1:8775833-8775852 | None:intergenic | 15.0% |
| !!! | TATGGTTTGTATTTTTATTT+TGG | + | chr1.1:8771330-8771349 | None:intergenic | 15.0% |
| !!! | TTTAATAAAAGTACCTATTA+AGG | - | chr1.1:8774591-8774610 | MS.gene60267:intron | 15.0% |
| !!! | TTTTAGAAACTATAAAAAAG+TGG | - | chr1.1:8772278-8772297 | MS.gene60267:intron | 15.0% |
| !!! | TTTTATTACTTTTTTAAACG+TGG | - | chr1.1:8774832-8774851 | MS.gene60267:intron | 15.0% |
| !! | AAAAGTAGTAGAATTTGTAT+TGG | - | chr1.1:8771940-8771959 | MS.gene60267:intron | 20.0% |
| !! | ACAAATTATATCTAACATAG+AGG | - | chr1.1:8772614-8772633 | MS.gene60267:intron | 20.0% |
| !! | ACAGAGAACATATTAAAAAA+TGG | - | chr1.1:8776112-8776131 | MS.gene60267:intron | 20.0% |
| !! | ACCTAAAGATAATTAATCTA+GGG | + | chr1.1:8775019-8775038 | None:intergenic | 20.0% |
| !! | AGATAATAATAATAATGCCT+TGG | + | chr1.1:8772196-8772215 | None:intergenic | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr1.1:8772330-8772349 | None:intergenic | 20.0% |
| !! | CAAAATTAAATGCATATCAA+TGG | - | chr1.1:8775855-8775874 | MS.gene60267:intron | 20.0% |
| !! | CAAAGAATAAAAGTGATTAA+AGG | - | chr1.1:8773456-8773475 | MS.gene60267:intron | 20.0% |
| !! | CAAATATCATACATCAATTT+AGG | + | chr1.1:8773222-8773241 | None:intergenic | 20.0% |
| !! | GAAGCTAGTTAAATATATAT+TGG | - | chr1.1:8775201-8775220 | MS.gene60267:intron | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | - | chr1.1:8775506-8775525 | MS.gene60267:intron | 20.0% |
| !! | TTAGTAGAATACATAAAATC+AGG | - | chr1.1:8773354-8773373 | MS.gene60267:intron | 20.0% |
| !!! | AAATAGAAATGATGGTTTTT+TGG | - | chr1.1:8771730-8771749 | MS.gene60267:intron | 20.0% |
| !!! | AAGTGTAGTACTTATTTTTT+TGG | - | chr1.1:8773854-8773873 | MS.gene60267:CDS | 20.0% |
| !!! | ATACATGTAATTTTAGACTT+TGG | - | chr1.1:8775887-8775906 | MS.gene60267:intron | 20.0% |
| !!! | ATGTTCTTTATTAGTCATTT+TGG | - | chr1.1:8771129-8771148 | MS.gene60267:CDS | 20.0% |
| !!! | ATTTTTTAATATGTTCTCTG+TGG | + | chr1.1:8776113-8776132 | None:intergenic | 20.0% |
| !!! | CATATTTAAGTACTTTTCAT+TGG | + | chr1.1:8774654-8774673 | None:intergenic | 20.0% |
| !!! | GACATTATTCTATTTTTAAG+GGG | + | chr1.1:8775831-8775850 | None:intergenic | 20.0% |
| !!! | GATTTTTGTCATTGTAATTT+TGG | + | chr1.1:8771260-8771279 | None:intergenic | 20.0% |
| !!! | GTTTTCTAGTTATATATCTA+GGG | + | chr1.1:8771466-8771485 | None:intergenic | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr1.1:8774173-8774192 | MS.gene60267:CDS | 20.0% |
| !!! | TAAATGAATATGTGTCTTTT+GGG | - | chr1.1:8772659-8772678 | MS.gene60267:intron | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | - | chr1.1:8774712-8774731 | MS.gene60267:intron | 20.0% |
| !!! | TATTACTTTTTTATGCAAGT+GGG | - | chr1.1:8774753-8774772 | MS.gene60267:intron | 20.0% |
| !!! | TGTTTTCTAGTTATATATCT+AGG | + | chr1.1:8771467-8771486 | None:intergenic | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | - | chr1.1:8772492-8772511 | MS.gene60267:intron | 20.0% |
| !!! | TTATTACTTTTTTATGCAAG+TGG | - | chr1.1:8774752-8774771 | MS.gene60267:intron | 20.0% |
| !!! | TTATTCAATAACTTTTATGG+TGG | - | chr1.1:8773485-8773504 | MS.gene60267:intron | 20.0% |
| !!! | TTGAATATAATTGATTCTGA+CGG | - | chr1.1:8774082-8774101 | MS.gene60267:CDS | 20.0% |
| !!! | TTTTCTAGTTATATATCTAG+GGG | + | chr1.1:8771465-8771484 | None:intergenic | 20.0% |
| !!! | TTTTTAAGTTTTGGCAAATA+GGG | - | chr1.1:8773082-8773101 | MS.gene60267:intron | 20.0% |
| !!! | TTTTTTAAGTTTTGGCAAAT+AGG | - | chr1.1:8773081-8773100 | MS.gene60267:intron | 20.0% |
| ! | AAAATATATGTATGTGTGTG+TGG | + | chr1.1:8770989-8771008 | None:intergenic | 25.0% |
| ! | AAACGACTAATATTAAGAGA+CGG | + | chr1.1:8775374-8775393 | None:intergenic | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | - | chr1.1:8774264-8774283 | MS.gene60267:intron | 25.0% |
| ! | AAAGTCAAATATGTAGGTAT+TGG | - | chr1.1:8773968-8773987 | MS.gene60267:CDS | 25.0% |
| ! | AAGCTAAAGTTGAAAATGTT+TGG | - | chr1.1:8771349-8771368 | MS.gene60267:CDS | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr1.1:8774232-8774251 | MS.gene60267:CDS | 25.0% |
| ! | AGCTAAAGTTGAAAATGTTT+GGG | - | chr1.1:8771350-8771369 | MS.gene60267:CDS | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | - | chr1.1:8773366-8773385 | MS.gene60267:intron | 25.0% |
| ! | ATACTAAATGTGCACTAATT+TGG | - | chr1.1:8775985-8776004 | MS.gene60267:intron | 25.0% |
| ! | ATATTAGATTACATTTGACC+TGG | - | chr1.1:8771970-8771989 | MS.gene60267:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr1.1:8775475-8775494 | None:intergenic | 25.0% |
| ! | CTAAACATCTTAAACAATGT+TGG | - | chr1.1:8771021-8771040 | MS.gene60267:CDS | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr1.1:8772316-8772335 | None:intergenic | 25.0% |
| ! | CTCTTAATATTAGTCGTTTA+AGG | - | chr1.1:8775375-8775394 | MS.gene60267:intron | 25.0% |
| ! | CTTGTATACAATGTTTGTAT+AGG | + | chr1.1:8773573-8773592 | None:intergenic | 25.0% |
| ! | GAACAAATCTACAACAATAA+TGG | + | chr1.1:8771559-8771578 | None:intergenic | 25.0% |
| ! | GACCTAAAGATAATTAATCT+AGG | + | chr1.1:8775020-8775039 | None:intergenic | 25.0% |
| ! | GAGAACATATTAAAAAATGG+TGG | - | chr1.1:8776115-8776134 | MS.gene60267:intron | 25.0% |
| ! | GGGCAATAAAAGAAAATAAT+AGG | - | chr1.1:8774284-8774303 | MS.gene60267:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr1.1:8774739-8774758 | None:intergenic | 25.0% |
| ! | GTTTCATATGTAAAGATAGT+GGG | + | chr1.1:8774678-8774697 | None:intergenic | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | - | chr1.1:8774263-8774282 | MS.gene60267:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr1.1:8774249-8774268 | MS.gene60267:intron | 25.0% |
| ! | TAACCATAGTATATAGTACT+AGG | + | chr1.1:8771672-8771691 | None:intergenic | 25.0% |
| ! | TAAGTTAAGTATAGACCAAA+TGG | + | chr1.1:8774042-8774061 | None:intergenic | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr1.1:8774794-8774813 | MS.gene60267:intron | 25.0% |
| ! | TATTAGATTACATTTGACCT+GGG | - | chr1.1:8771971-8771990 | MS.gene60267:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr1.1:8775476-8775495 | None:intergenic | 25.0% |
| ! | TCCCTAGATTAATTATCTTT+AGG | - | chr1.1:8775015-8775034 | MS.gene60267:intron | 25.0% |
| ! | TCCTTAATCTTGATTGAAAT+AGG | + | chr1.1:8773168-8773187 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr1.1:8772317-8772336 | None:intergenic | 25.0% |
| ! | TCTATAATATGATTGTCTGT+CGG | - | chr1.1:8772999-8773018 | MS.gene60267:intron | 25.0% |
| ! | TGAATATGATGTTGTTGAAA+TGG | - | chr1.1:8773629-8773648 | MS.gene60267:intron | 25.0% |
| ! | TGTTTCATATGTAAAGATAG+TGG | + | chr1.1:8774679-8774698 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATACAATG+TGG | - | chr1.1:8772089-8772108 | MS.gene60267:intron | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr1.1:8774793-8774812 | MS.gene60267:intron | 25.0% |
| ! | TTGATGTATGATATTTGTAC+AGG | - | chr1.1:8773225-8773244 | MS.gene60267:intron | 25.0% |
| ! | TTGTTCTAGTACATAGTATT+TGG | - | chr1.1:8771573-8771592 | MS.gene60267:intron | 25.0% |
| !! | ATCATACATCAATTTAGGTT+AGG | + | chr1.1:8773217-8773236 | None:intergenic | 25.0% |
| !! | ATTTAACTAGCTTCCTTAAT+AGG | + | chr1.1:8775195-8775214 | None:intergenic | 25.0% |
| !! | CTACATATTTGACTTTAAAG+TGG | + | chr1.1:8773964-8773983 | None:intergenic | 25.0% |
| !! | GTAAATGAATATGTGTCTTT+TGG | - | chr1.1:8772658-8772677 | MS.gene60267:intron | 25.0% |
| !! | TAAAATTTTTGTAGAAGTGG+TGG | - | chr1.1:8772241-8772260 | MS.gene60267:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr1.1:8774129-8774148 | MS.gene60267:CDS | 25.0% |
| !! | TGGTAAAATTTTTGTAGAAG+TGG | - | chr1.1:8772238-8772257 | MS.gene60267:intron | 25.0% |
| !! | TTTAAGATGTGTTTGTAGTT+TGG | - | chr1.1:8771227-8771246 | MS.gene60267:CDS | 25.0% |
| !!! | AATGTTGGTTAGTATCATTT+TGG | - | chr1.1:8771036-8771055 | MS.gene60267:CDS | 25.0% |
| !!! | ACATTTTCAACTTTAGCTTA+TGG | + | chr1.1:8771348-8771367 | None:intergenic | 25.0% |
| !!! | AGGGAGTATTAAACTTTTAT+TGG | - | chr1.1:8775625-8775644 | MS.gene60267:intron | 25.0% |
| !!! | ATTAGTTGTGTTGATTTTGA+TGG | - | chr1.1:8775423-8775442 | MS.gene60267:intron | 25.0% |
| !!! | CACTTTAAAGTCAAATATGT+AGG | - | chr1.1:8773962-8773981 | MS.gene60267:CDS | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | - | chr1.1:8774711-8774730 | MS.gene60267:intron | 25.0% |
| !!! | TAGGTATTTTACTGCTTTTA+AGG | + | chr1.1:8776245-8776264 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTTTGGCAAATAG+GGG | - | chr1.1:8773083-8773102 | MS.gene60267:intron | 25.0% |
| !!! | TTTTAGAAAAGTTAGAAGCT+AGG | - | chr1.1:8774346-8774365 | MS.gene60267:intron | 25.0% |
| !!! | TTTTTGGCTAGAATTGTTTT+TGG | - | chr1.1:8774439-8774458 | MS.gene60267:intron | 25.0% |
| AACGGTAAATTATTGTGAGA+CGG | - | chr1.1:8775602-8775621 | MS.gene60267:intron | 30.0% | |
| AACTTGACATCATCAATAAC+AGG | + | chr1.1:8776601-8776620 | None:intergenic | 30.0% | |
| AAGGAACAGACAACTATATA+AGG | + | chr1.1:8774886-8774905 | None:intergenic | 30.0% | |
| ACTTAACTTAAGTGTGTGTT+TGG | - | chr1.1:8774052-8774071 | MS.gene60267:CDS | 30.0% | |
| AGCTGGATTAATACCTATTA+AGG | - | chr1.1:8775179-8775198 | MS.gene60267:intron | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | - | chr1.1:8775395-8775414 | MS.gene60267:intron | 30.0% | |
| AGTTAGTGGAGTAGTTAAAT+TGG | - | chr1.1:8775486-8775505 | MS.gene60267:intron | 30.0% | |
| ATAGGAATAACACCAAAATC+AGG | + | chr1.1:8773555-8773574 | None:intergenic | 30.0% | |
| ATATCAGACACTAAAACCAA+TGG | - | chr1.1:8775249-8775268 | MS.gene60267:intron | 30.0% | |
| ATATTCCCTAACACATCATA+TGG | - | chr1.1:8776157-8776176 | MS.gene60267:intron | 30.0% | |
| ATTGTATACAAGTAGTGGTT+GGG | - | chr1.1:8773581-8773600 | MS.gene60267:intron | 30.0% | |
| ATTGTTCACATGTGAAGATT+TGG | + | chr1.1:8775048-8775067 | None:intergenic | 30.0% | |
| CAAAAACTCAATACCAGAAT+GGG | - | chr1.1:8773320-8773339 | MS.gene60267:intron | 30.0% | |
| CAAACATTGTATACAAGTAG+TGG | - | chr1.1:8773576-8773595 | MS.gene60267:intron | 30.0% | |
| CACTTACTATTAGAAGCTTT+AGG | + | chr1.1:8773735-8773754 | None:intergenic | 30.0% | |
| CATAAACAAGAACACATTCA+TGG | + | chr1.1:8770894-8770913 | None:intergenic | 30.0% | |
| CCAATTATTGTCATTGGAAA+AGG | + | chr1.1:8773041-8773060 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr1.1:8775472-8775491 | MS.gene60267:intron | 30.0% | |
| GAAATGGTTATTCATAATCC+TGG | - | chr1.1:8773645-8773664 | MS.gene60267:intron | 30.0% | |
| GAATGGTCATCTTCTATATT+GGG | + | chr1.1:8776196-8776215 | None:intergenic | 30.0% | |
| GATGTGTTAGGGAATATATA+AGG | + | chr1.1:8776154-8776173 | None:intergenic | 30.0% | |
| GCCTATTTCAATCAAGATTA+AGG | - | chr1.1:8773164-8773183 | MS.gene60267:intron | 30.0% | |
| GTAATAAAACGTGTACTACT+TGG | + | chr1.1:8774821-8774840 | None:intergenic | 30.0% | |
| GTGATTTGATTGGATATACA+TGG | - | chr1.1:8772636-8772655 | MS.gene60267:intron | 30.0% | |
| TAACATAGAGGTGATTTGAT+TGG | - | chr1.1:8772626-8772645 | MS.gene60267:intron | 30.0% | |
| TATAGTTGTCTGTTCCTTAA+CGG | - | chr1.1:8774888-8774907 | MS.gene60267:intron | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr1.1:8772529-8772548 | MS.gene60267:intron | 30.0% | |
| TGAATGGTCATCTTCTATAT+TGG | + | chr1.1:8776197-8776216 | None:intergenic | 30.0% | |
| TGCAATCCAATTATTGTCAT+TGG | + | chr1.1:8773047-8773066 | None:intergenic | 30.0% | |
| TTATATATCTAGGGGAAACA+AGG | + | chr1.1:8771457-8771476 | None:intergenic | 30.0% | |
| ! | CCTTTTCCAATGACAATAAT+TGG | - | chr1.1:8773038-8773057 | MS.gene60267:intron | 30.0% |
| ! | GTAGTAGAATTTGTATTGGT+TGG | - | chr1.1:8771944-8771963 | MS.gene60267:intron | 30.0% |
| !! | AAAAATGGTGGATTTGAAGA+AGG | - | chr1.1:8776127-8776146 | MS.gene60267:intron | 30.0% |
| !! | AGTACATGTGTTACTTTGTA+GGG | - | chr1.1:8771395-8771414 | MS.gene60267:intron | 30.0% |
| !! | ATTGGTTTGTAGCTAGTTAA+AGG | + | chr1.1:8771912-8771931 | None:intergenic | 30.0% |
| !! | GCTTTAAAACCATAAGCAAT+TGG | + | chr1.1:8773609-8773628 | None:intergenic | 30.0% |
| !! | TTACTATTAGAAGCTTTAGG+AGG | + | chr1.1:8773732-8773751 | None:intergenic | 30.0% |
| !! | TTATTGATTCTGTTGCTCTT+AGG | - | chr1.1:8773697-8773716 | MS.gene60267:intron | 30.0% |
| !! | TTGGTTCTAAAATGTATGAG+AGG | - | chr1.1:8771055-8771074 | MS.gene60267:CDS | 30.0% |
| AAACAAGAACACATTCATGG+TGG | + | chr1.1:8770891-8770910 | None:intergenic | 35.0% | |
| AAACCTGATATTTCCCATTC+TGG | + | chr1.1:8773336-8773355 | None:intergenic | 35.0% | |
| AAATAAGTGATGTGTCACGT+GGG | + | chr1.1:8774564-8774583 | None:intergenic | 35.0% | |
| AACTGAAAATGAGAGGACAT+AGG | + | chr1.1:8776371-8776390 | None:intergenic | 35.0% | |
| AAGGTTCCTTATTCATCCAA+AGG | - | chr1.1:8776457-8776476 | MS.gene60267:intron | 35.0% | |
| ACTTATCACAAATGTCTCAG+AGG | - | chr1.1:8771878-8771897 | MS.gene60267:intron | 35.0% | |
| ACTTGCCTTTAGCAAAGAAA+AGG | - | chr1.1:8775784-8775803 | MS.gene60267:intron | 35.0% | |
| AGAGCAACAGAATCAATAAG+AGG | + | chr1.1:8773696-8773715 | None:intergenic | 35.0% | |
| ATACCAGAATGGGAAATATC+AGG | - | chr1.1:8773330-8773349 | MS.gene60267:intron | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr1.1:8772312-8772331 | None:intergenic | 35.0% | |
| ATAGTTGTCTGTTCCTTAAC+GGG | - | chr1.1:8774889-8774908 | MS.gene60267:intron | 35.0% | |
| ATCACTCCATATGATGTGTT+AGG | + | chr1.1:8776166-8776185 | None:intergenic | 35.0% | |
| ATGGTCTGAAAAATCACATG+GGG | - | chr1.1:8771792-8771811 | MS.gene60267:intron | 35.0% | |
| ATGTTACTAGTTGTACCAGA+AGG | - | chr1.1:8773393-8773412 | MS.gene60267:intron | 35.0% | |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr1.1:8774425-8774444 | None:intergenic | 35.0% | |
| CAACATCATTTGCACTATGT+TGG | - | chr1.1:8776020-8776039 | MS.gene60267:intron | 35.0% | |
| CACTTAAGTTTGTAGCTGTT+GGG | - | chr1.1:8776503-8776522 | MS.gene60267:intron | 35.0% | |
| CATACCCAAAGAATATGAGA+GGG | + | chr1.1:8771757-8771776 | None:intergenic | 35.0% | |
| CATTGTATACAAGTAGTGGT+TGG | - | chr1.1:8773580-8773599 | MS.gene60267:intron | 35.0% | |
| CCAATGGCAATACACTAATA+AGG | - | chr1.1:8774625-8774644 | MS.gene60267:intron | 35.0% | |
| CCATTTAAGGAGTCTTTGTT+AGG | + | chr1.1:8774539-8774558 | None:intergenic | 35.0% | |
| CCTAACAAAGACTCCTTAAA+TGG | - | chr1.1:8774536-8774555 | MS.gene60267:intron | 35.0% | |
| CCTTATTAGTGTATTGCCAT+TGG | + | chr1.1:8774628-8774647 | None:intergenic | 35.0% | |
| CCTTATTCATCCAAAGGTAA+AGG | - | chr1.1:8776463-8776482 | MS.gene60267:intron | 35.0% | |
| CCTTTACCTTTGGATGAATA+AGG | + | chr1.1:8776466-8776485 | None:intergenic | 35.0% | |
| CTACAAAGTAACACATGTAC+TGG | + | chr1.1:8771396-8771415 | None:intergenic | 35.0% | |
| CTAGACATGATCTAATACCA+AGG | - | chr1.1:8772176-8772195 | MS.gene60267:intron | 35.0% | |
| CTTGCCTTTAGCAAAGAAAA+GGG | - | chr1.1:8775785-8775804 | MS.gene60267:intron | 35.0% | |
| GACTAATATTAAGAGACGGA+GGG | + | chr1.1:8775370-8775389 | None:intergenic | 35.0% | |
| GATGATCTTTCTTCTCTTTG+TGG | - | chr1.1:8776574-8776593 | MS.gene60267:CDS | 35.0% | |
| GATGCAAGTAATTCATGTGA+AGG | - | chr1.1:8776394-8776413 | MS.gene60267:intron | 35.0% | |
| GATGGTCTGAAAAATCACAT+GGG | - | chr1.1:8771791-8771810 | MS.gene60267:intron | 35.0% | |
| GCAAAAACTCAATACCAGAA+TGG | - | chr1.1:8773319-8773338 | MS.gene60267:intron | 35.0% | |
| GCACCTAGTACTATATACTA+TGG | - | chr1.1:8771666-8771685 | MS.gene60267:intron | 35.0% | |
| GGACAAAGAATGAAAGATAG+TGG | + | chr1.1:8772006-8772025 | None:intergenic | 35.0% | |
| GTAAATTATTGTGAGACGGA+GGG | - | chr1.1:8775606-8775625 | MS.gene60267:intron | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr1.1:8772528-8772547 | MS.gene60267:intron | 35.0% | |
| GTCATACATGAACTAAATCG+AGG | - | chr1.1:8775937-8775956 | MS.gene60267:intron | 35.0% | |
| TAAATAAGTGATGTGTCACG+TGG | + | chr1.1:8774565-8774584 | None:intergenic | 35.0% | |
| TATTCATCCAAAGGTAAAGG+TGG | - | chr1.1:8776466-8776485 | MS.gene60267:intron | 35.0% | |
| TCACTCCATATGATGTGTTA+GGG | + | chr1.1:8776165-8776184 | None:intergenic | 35.0% | |
| TCATACCCAAAGAATATGAG+AGG | + | chr1.1:8771758-8771777 | None:intergenic | 35.0% | |
| TCATTGCATTGTGTGTCATA+CGG | - | chr1.1:8775734-8775753 | MS.gene60267:intron | 35.0% | |
| TGATATTTGTACAGGACTAG+TGG | - | chr1.1:8773233-8773252 | MS.gene60267:intron | 35.0% | |
| TGATGGTCTGAAAAATCACA+TGG | - | chr1.1:8771790-8771809 | MS.gene60267:intron | 35.0% | |
| TGCTGGTAAAGACACAATTA+AGG | - | chr1.1:8776438-8776457 | MS.gene60267:intron | 35.0% | |
| TTAATATACAGCCACACCAT+TGG | + | chr1.1:8775268-8775287 | None:intergenic | 35.0% | |
| TTGTAGATGCAAGAACCATT+TGG | - | chr1.1:8774024-8774043 | MS.gene60267:CDS | 35.0% | |
| TTGTTAGGAAACTACCATTG+TGG | + | chr1.1:8774524-8774543 | None:intergenic | 35.0% | |
| TTTGAATCCACCTTTACCTT+TGG | + | chr1.1:8776476-8776495 | None:intergenic | 35.0% | |
| ! | AAGTAACACATGTACTGGTA+AGG | + | chr1.1:8771391-8771410 | None:intergenic | 35.0% |
| ! | AATTTTTCTTCCTCCAATGG+AGG | - | chr1.1:8774917-8774936 | MS.gene60267:intron | 35.0% |
| ! | AGATCCCTTTTCTTTGCTAA+AGG | + | chr1.1:8775792-8775811 | None:intergenic | 35.0% |
| ! | ATAGGTTTAGCTTAGCTTGA+TGG | - | chr1.1:8772218-8772237 | MS.gene60267:intron | 35.0% |
| ! | ATATCTGTTGCTCCTGATTT+TGG | - | chr1.1:8773540-8773559 | MS.gene60267:intron | 35.0% |
| ! | ATGATTGTTGAAGCTTTTGC+TGG | - | chr1.1:8776421-8776440 | MS.gene60267:intron | 35.0% |
| ! | ATTTTTCTTCCTCCAATGGA+GGG | - | chr1.1:8774918-8774937 | MS.gene60267:intron | 35.0% |
| ! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr1.1:8774914-8774933 | MS.gene60267:intron | 35.0% |
| ! | GCACTGTAGAGAATTGTTTT+TGG | - | chr1.1:8774461-8774480 | MS.gene60267:intron | 35.0% |
| ! | TATGTCCTCTCATTTTCAGT+TGG | - | chr1.1:8776370-8776389 | MS.gene60267:intron | 35.0% |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr1.1:8774423-8774442 | MS.gene60267:intron | 35.0% |
| !! | CAGTACATGTGTTACTTTGT+AGG | - | chr1.1:8771394-8771413 | MS.gene60267:intron | 35.0% |
| !! | GAATGAAAGATAGTGGAAAG+TGG | + | chr1.1:8771999-8772018 | None:intergenic | 35.0% |
| !! | TATGATTGTCTGTCGGTTTA+TGG | - | chr1.1:8773006-8773025 | MS.gene60267:intron | 35.0% |
| !! | TGAATATGTGTCTTTTGGGT+AGG | - | chr1.1:8772663-8772682 | MS.gene60267:intron | 35.0% |
| !!! | GTAGAGAATTGTTTTTGGCT+GGG | - | chr1.1:8774466-8774485 | MS.gene60267:intron | 35.0% |
| !!! | TGTAGAGAATTGTTTTTGGC+TGG | - | chr1.1:8774465-8774484 | MS.gene60267:intron | 35.0% |
| AATAAGTGATGTGTCACGTG+GGG | + | chr1.1:8774563-8774582 | None:intergenic | 40.0% | |
| ACTTACCATCAATGAGTGAG+AGG | + | chr1.1:8770949-8770968 | None:intergenic | 40.0% | |
| AGACACTAAAACCAATGGTG+TGG | - | chr1.1:8775254-8775273 | MS.gene60267:intron | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr1.1:8774362-8774381 | MS.gene60267:intron | 40.0% | |
| ATATAAGGACTCTCTCTCCT+GGG | + | chr1.1:8774871-8774890 | None:intergenic | 40.0% | |
| ATCAGAGCTAAAAGGAACAG+TGG | - | chr1.1:8773287-8773306 | MS.gene60267:intron | 40.0% | |
| ATTTGTGATAAGTCACGTGG+TGG | + | chr1.1:8771871-8771890 | None:intergenic | 40.0% | |
| CAAGTTGCTAGAACAATTCC+AGG | - | chr1.1:8776340-8776359 | MS.gene60267:intron | 40.0% | |
| CACACACTATGTGCTAAAGT+TGG | + | chr1.1:8775915-8775934 | None:intergenic | 40.0% | |
| CACATGTGAAGATTTGGCAA+TGG | + | chr1.1:8775042-8775061 | None:intergenic | 40.0% | |
| CATCACCAACTGAAAATGAG+AGG | + | chr1.1:8776378-8776397 | None:intergenic | 40.0% | |
| CCAAAACCATCAGAGCTAAA+AGG | - | chr1.1:8773279-8773298 | MS.gene60267:intron | 40.0% | |
| CCACTGTAGGAAATCAAATC+AGG | + | chr1.1:8772027-8772046 | None:intergenic | 40.0% | |
| CGACTAATATTAAGAGACGG+AGG | + | chr1.1:8775371-8775390 | None:intergenic | 40.0% | |
| CTAAAAGGAACAGTGGTAAC+TGG | - | chr1.1:8773294-8773313 | MS.gene60267:intron | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr1.1:8774430-8774449 | None:intergenic | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr1.1:8772533-8772552 | MS.gene60267:intron | 40.0% | |
| CTTACCATCAATGAGTGAGA+GGG | + | chr1.1:8770948-8770967 | None:intergenic | 40.0% | |
| GAAAAATTGAGTCCCCGTTA+AGG | + | chr1.1:8774905-8774924 | None:intergenic | 40.0% | |
| GACATTTGTGATAAGTCACG+TGG | + | chr1.1:8771874-8771893 | None:intergenic | 40.0% | |
| GCACTTAAGTTTGTAGCTGT+TGG | - | chr1.1:8776502-8776521 | MS.gene60267:intron | 40.0% | |
| GCAGTAAAATACCTAGACTC+AGG | - | chr1.1:8776250-8776269 | MS.gene60267:intron | 40.0% | |
| GGAGTCATTGAGTCCTTAAT+AGG | + | chr1.1:8774607-8774626 | None:intergenic | 40.0% | |
| GGAGTGGTCCTTGTTAAATA+AGG | - | chr1.1:8774951-8774970 | MS.gene60267:intron | 40.0% | |
| GGTAAATTATTGTGAGACGG+AGG | - | chr1.1:8775605-8775624 | MS.gene60267:intron | 40.0% | |
| GGTCATCTTCTATATTGGGT+GGG | + | chr1.1:8776192-8776211 | None:intergenic | 40.0% | |
| GTGTCATACGGAAATCAGTT+AGG | - | chr1.1:8775746-8775765 | MS.gene60267:intron | 40.0% | |
| TAAGGACTCAATGACTCCAA+TGG | - | chr1.1:8774609-8774628 | MS.gene60267:intron | 40.0% | |
| TAATCTAGGGATAGTGCGTT+TGG | + | chr1.1:8775006-8775025 | None:intergenic | 40.0% | |
| TAATTTGACTGGACCACTGT+AGG | + | chr1.1:8772040-8772059 | None:intergenic | 40.0% | |
| TACCATTGTGGATGCTCTTA+GGG | + | chr1.1:8774512-8774531 | None:intergenic | 40.0% | |
| TAGTTGTCTGTTCCTTAACG+GGG | - | chr1.1:8774890-8774909 | MS.gene60267:intron | 40.0% | |
| TATATAAGGACTCTCTCTCC+TGG | + | chr1.1:8774872-8774891 | None:intergenic | 40.0% | |
| TGGACCCTCTCATATTCTTT+GGG | - | chr1.1:8771750-8771769 | MS.gene60267:intron | 40.0% | |
| TGGTCATCTTCTATATTGGG+TGG | + | chr1.1:8776193-8776212 | None:intergenic | 40.0% | |
| TTGGACCCTCTCATATTCTT+TGG | - | chr1.1:8771749-8771768 | MS.gene60267:intron | 40.0% | |
| ! | CCTGATTTGATTTCCTACAG+TGG | - | chr1.1:8772024-8772043 | MS.gene60267:intron | 40.0% |
| ! | GCAAATGGGAATTTTGAGCT+TGG | - | chr1.1:8773255-8773274 | MS.gene60267:intron | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr1.1:8774376-8774395 | MS.gene60267:intron | 40.0% |
| ! | TAAAGGTGGATTCAAACGTG+CGG | - | chr1.1:8776480-8776499 | MS.gene60267:intron | 40.0% |
| ! | TATGAAAAGAGCACGCATGA+TGG | - | chr1.1:8771773-8771792 | MS.gene60267:intron | 40.0% |
| ! | TGACTTAGAGCATCTCCAAT+GGG | + | chr1.1:8774981-8775000 | None:intergenic | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr1.1:8774379-8774398 | MS.gene60267:intron | 40.0% |
| !! | TGTGTTACTTTGTAGGGACT+TGG | - | chr1.1:8771401-8771420 | MS.gene60267:intron | 40.0% |
| !!! | ACTGTTCCTTTTAGCTCTGA+TGG | + | chr1.1:8773288-8773307 | None:intergenic | 40.0% |
| !!! | CCTTTTAGCTCTGATGGTTT+TGG | + | chr1.1:8773282-8773301 | None:intergenic | 40.0% |
| AAAGGAACAGTGGTAACTGG+AGG | - | chr1.1:8773297-8773316 | MS.gene60267:intron | 45.0% | |
| AAGGATTCTACCATCCATCC+TGG | + | chr1.1:8776226-8776245 | None:intergenic | 45.0% | |
| AGCACACAGTAGAACATAGC+TGG | - | chr1.1:8775162-8775181 | MS.gene60267:intron | 45.0% | |
| AGCTGTTGGGACAAGAACAA+GGG | - | chr1.1:8776516-8776535 | MS.gene60267:intron | 45.0% | |
| AGGATTCTACCATCCATCCT+GGG | + | chr1.1:8776225-8776244 | None:intergenic | 45.0% | |
| CACAAGAGCAGTAGAACTAG+TGG | - | chr1.1:8776294-8776313 | MS.gene60267:intron | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | - | chr1.1:8772515-8772534 | MS.gene60267:intron | 45.0% | |
| CTACCATTGTGGATGCTCTT+AGG | + | chr1.1:8774513-8774532 | None:intergenic | 45.0% | |
| CTGAGAAATGACCTGAGTCT+AGG | + | chr1.1:8776264-8776283 | None:intergenic | 45.0% | |
| GAAAGTGGAACAGAAGAGCA+AGG | + | chr1.1:8770918-8770937 | None:intergenic | 45.0% | |
| GGTCATTTCTCAGTTCCACA+AGG | - | chr1.1:8776271-8776290 | MS.gene60267:intron | 45.0% | |
| GGTTGGGATCCAATTGCTTA+TGG | - | chr1.1:8773597-8773616 | MS.gene60267:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr1.1:8772537-8772556 | MS.gene60267:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr1.1:8772556-8772537 | None:intergenic | 45.0% | |
| GTTAAATAAGGACCCCCCAT+TGG | - | chr1.1:8774963-8774982 | MS.gene60267:intron | 45.0% | |
| GTTGAAGAAGATCCTGCTTG+TGG | - | chr1.1:8773669-8773688 | MS.gene60267:intron | 45.0% | |
| TAGCTGTTGGGACAAGAACA+AGG | - | chr1.1:8776515-8776534 | MS.gene60267:intron | 45.0% | |
| TCAATAAGAGGTCCACAAGC+AGG | + | chr1.1:8773684-8773703 | None:intergenic | 45.0% | |
| TCTCTCTCCTGGGTAACTAA+CGG | + | chr1.1:8774861-8774880 | None:intergenic | 45.0% | |
| ! | ACTTAGAGCATCTCCAATGG+GGG | + | chr1.1:8774979-8774998 | None:intergenic | 45.0% |
| ! | CTGACTTAGAGCATCTCCAA+TGG | + | chr1.1:8774982-8775001 | None:intergenic | 45.0% |
| ! | GACTTAGAGCATCTCCAATG+GGG | + | chr1.1:8774980-8774999 | None:intergenic | 45.0% |
| ! | GTACAGGACTAGTGGCAAAT+GGG | - | chr1.1:8773241-8773260 | MS.gene60267:intron | 45.0% |
| ! | TGGGGGGTCCTTATTTAACA+AGG | + | chr1.1:8774962-8774981 | None:intergenic | 45.0% |
| ! | TGTACAGGACTAGTGGCAAA+TGG | - | chr1.1:8773240-8773259 | MS.gene60267:intron | 45.0% |
| !! | ATTATTATTATTATCTATAT+AGG | - | chr1.1:8772200-8772219 | MS.gene60267:intron | 5.0% |
| AACATCCTACCTACCTGCTC+TGG | + | chr1.1:8775308-8775327 | None:intergenic | 50.0% | |
| AAGAGACGGAGGGAGTAGTA+TGG | + | chr1.1:8775360-8775379 | None:intergenic | 50.0% | |
| AGAGCAGTAGAACTAGTGGC+AGG | - | chr1.1:8776298-8776317 | MS.gene60267:intron | 50.0% | |
| ATTCTACCATCCATCCTGGG+AGG | + | chr1.1:8776222-8776241 | None:intergenic | 50.0% | |
| CAATGAGTGAGAGGGAGACA+TGG | + | chr1.1:8770940-8770959 | None:intergenic | 50.0% | |
| CTCACTGCATATGCACCTTC+TGG | + | chr1.1:8773411-8773430 | None:intergenic | 50.0% | |
| CTCTCTCCTGGGTAACTAAC+GGG | + | chr1.1:8774860-8774879 | None:intergenic | 50.0% | |
| GCAGGATCTTCTTCAACACC+AGG | + | chr1.1:8773666-8773685 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr1.1:8772536-8772555 | MS.gene60267:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr1.1:8772555-8772536 | None:intergenic | 50.0% | |
| GGTGCATATGCAGTGAGACT+AGG | - | chr1.1:8773414-8773433 | MS.gene60267:intron | 50.0% | |
| GTCTCCCTCTCACTCATTGA+TGG | - | chr1.1:8770941-8770960 | MS.gene60267:CDS | 50.0% | |
| TATATACACAGGGCCAGAGC+AGG | - | chr1.1:8775292-8775311 | MS.gene60267:intron | 50.0% | |
| TCTACTGCTCTTGTGCCTTG+TGG | + | chr1.1:8776289-8776308 | None:intergenic | 50.0% | |
| TGAGAGGGAGACATGGAAAG+TGG | + | chr1.1:8770933-8770952 | None:intergenic | 50.0% | |
| TGTCACGTGGGGTCCATTTA+AGG | + | chr1.1:8774552-8774571 | None:intergenic | 50.0% | |
| TTCTACCATCCATCCTGGGA+GGG | + | chr1.1:8776221-8776240 | None:intergenic | 50.0% | |
| ! | CTTAGAGCATCTCCAATGGG+GGG | + | chr1.1:8774978-8774997 | None:intergenic | 50.0% |
| ! | GAGAGGACATAGGTTTTGCC+TGG | + | chr1.1:8776361-8776380 | None:intergenic | 50.0% |
| ACAAGGACCACTCCCTGTGA+AGG | + | chr1.1:8774945-8774964 | None:intergenic | 55.0% | |
| ACATGGGGCTGTATGCCAAC+TGG | - | chr1.1:8771807-8771826 | MS.gene60267:intron | 55.0% | |
| ATGGGGCTGTATGCCAACTG+GGG | - | chr1.1:8771809-8771828 | MS.gene60267:intron | 55.0% | |
| CACTCATCAACTCCCCCAGT+TGG | + | chr1.1:8771825-8771844 | None:intergenic | 55.0% | |
| CATGGGGCTGTATGCCAACT+GGG | - | chr1.1:8771808-8771827 | MS.gene60267:intron | 55.0% | |
| CCAATGGAGGGTCCTTCACA+GGG | - | chr1.1:8774930-8774949 | MS.gene60267:intron | 55.0% | |
| GGATGCTCTTAGGGCCTGTT+TGG | + | chr1.1:8774503-8774522 | None:intergenic | 55.0% | |
| GGGCAGAAGCTGAACCAAAC+AGG | - | chr1.1:8774486-8774505 | MS.gene60267:intron | 55.0% | |
| GTGGAACCCGTTAGTTACCC+AGG | - | chr1.1:8774851-8774870 | MS.gene60267:intron | 55.0% | |
| TCCAATGGAGGGTCCTTCAC+AGG | - | chr1.1:8774929-8774948 | MS.gene60267:intron | 55.0% | |
| TCTACCATCCATCCTGGGAG+GGG | + | chr1.1:8776220-8776239 | None:intergenic | 55.0% | |
| TGTGAAGGACCCTCCATTGG+AGG | + | chr1.1:8774930-8774949 | None:intergenic | 55.0% | |
| !! | GATAGTGGAAAGTGGAGCCC+AGG | + | chr1.1:8771991-8772010 | None:intergenic | 55.0% |
| !! | GGCCCTAAGAGCATCCACAA+TGG | - | chr1.1:8774507-8774526 | MS.gene60267:intron | 55.0% |
| ACCATTCACCCCTCCCAGGA+TGG | - | chr1.1:8776209-8776228 | MS.gene60267:intron | 60.0% | |
| CCCTGTGAAGGACCCTCCAT+TGG | + | chr1.1:8774933-8774952 | None:intergenic | 60.0% | |
| GATGACCATTCACCCCTCCC+AGG | - | chr1.1:8776205-8776224 | MS.gene60267:intron | 60.0% | |
| TACACAGGGCCAGAGCAGGT+AGG | - | chr1.1:8775296-8775315 | MS.gene60267:intron | 60.0% | |
| TCCATCCTGGGAGGGGTGAA+TGG | + | chr1.1:8776213-8776232 | None:intergenic | 60.0% | |
| TGGGGCTGTATGCCAACTGG+GGG | - | chr1.1:8771810-8771829 | MS.gene60267:intron | 60.0% | |
| TTCACCCCTCCCAGGATGGA+TGG | - | chr1.1:8776213-8776232 | MS.gene60267:intron | 60.0% | |
| CAGGGCCAGAGCAGGTAGGT+AGG | - | chr1.1:8775300-8775319 | MS.gene60267:intron | 65.0% | |
| GGAGGGTCCTTCACAGGGAG+TGG | - | chr1.1:8774935-8774954 | MS.gene60267:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 8770863 | 8776642 | 8770863 | ID=MS.gene60267 |
| chr1.1 | mRNA | 8770863 | 8776642 | 8770863 | ID=MS.gene60267.t1;Parent=MS.gene60267 |
| chr1.1 | exon | 8776543 | 8776642 | 8776543 | ID=MS.gene60267.t1.exon1;Parent=MS.gene60267.t1 |
| chr1.1 | CDS | 8776543 | 8776642 | 8776543 | ID=cds.MS.gene60267.t1;Parent=MS.gene60267.t1 |
| chr1.1 | exon | 8773758 | 8774258 | 8773758 | ID=MS.gene60267.t1.exon2;Parent=MS.gene60267.t1 |
| chr1.1 | CDS | 8773758 | 8774258 | 8773758 | ID=cds.MS.gene60267.t1;Parent=MS.gene60267.t1 |
| chr1.1 | exon | 8770863 | 8771389 | 8770863 | ID=MS.gene60267.t1.exon3;Parent=MS.gene60267.t1 |
| chr1.1 | CDS | 8770863 | 8771389 | 8770863 | ID=cds.MS.gene60267.t1;Parent=MS.gene60267.t1 |
| Gene Sequence |
| Protein sequence |
