Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025564.t1 | XP_003605789.2 | 96.5 | 367 | 13 | 0 | 1 | 367 | 4 | 370 | 1.80E-208 | 734.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025564.t1 | G7JTL9 | 96.5 | 367 | 13 | 0 | 1 | 367 | 1 | 367 | 1.3e-208 | 734.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene60267 | MS.gene025564 | PPI |
MS.gene025564 | MS.gene015971 | PPI |
MS.gene51556 | MS.gene025564 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025564.t1 | MTR_4g039680 | 96.458 | 367 | 13 | 0 | 1 | 367 | 1 | 367 | 0.0 | 733 |
MS.gene025564.t1 | MTR_4g039720 | 88.154 | 363 | 43 | 0 | 5 | 367 | 9 | 371 | 0.0 | 677 |
MS.gene025564.t1 | MTR_4g039740 | 87.193 | 367 | 47 | 0 | 1 | 367 | 1 | 367 | 0.0 | 677 |
MS.gene025564.t1 | MTR_0045s0110 | 80.109 | 367 | 73 | 0 | 1 | 367 | 1 | 367 | 0.0 | 608 |
MS.gene025564.t1 | MTR_1g011800 | 53.636 | 330 | 151 | 2 | 34 | 361 | 39 | 368 | 3.29e-128 | 373 |
MS.gene025564.t1 | MTR_2g103170 | 47.904 | 334 | 168 | 2 | 34 | 361 | 28 | 361 | 1.77e-110 | 327 |
MS.gene025564.t1 | MTR_2g019600 | 42.598 | 331 | 189 | 1 | 34 | 363 | 35 | 365 | 7.50e-95 | 288 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025564.t1 | AT3G08030 | 67.647 | 340 | 109 | 1 | 29 | 367 | 26 | 365 | 4.39e-175 | 491 |
MS.gene025564.t1 | AT3G08030 | 68.421 | 323 | 101 | 1 | 46 | 367 | 1 | 323 | 1.25e-168 | 473 |
MS.gene025564.t1 | AT2G41800 | 60.241 | 332 | 131 | 1 | 34 | 364 | 36 | 367 | 6.50e-150 | 428 |
MS.gene025564.t1 | AT2G41810 | 57.778 | 360 | 145 | 3 | 11 | 363 | 7 | 366 | 9.63e-150 | 427 |
MS.gene025564.t1 | AT5G25460 | 52.778 | 360 | 167 | 2 | 3 | 361 | 4 | 361 | 1.51e-134 | 389 |
MS.gene025564.t1 | AT5G11420 | 55.319 | 329 | 146 | 1 | 34 | 361 | 30 | 358 | 1.85e-133 | 386 |
MS.gene025564.t1 | AT4G32460 | 54.407 | 329 | 149 | 1 | 34 | 361 | 29 | 357 | 4.81e-132 | 382 |
MS.gene025564.t1 | AT4G32460 | 54.407 | 329 | 149 | 1 | 34 | 361 | 29 | 357 | 4.81e-132 | 382 |
MS.gene025564.t1 | AT4G32460 | 54.890 | 317 | 142 | 1 | 46 | 361 | 1 | 317 | 1.46e-129 | 374 |
MS.gene025564.t1 | AT4G32460 | 54.890 | 317 | 142 | 1 | 46 | 361 | 1 | 317 | 1.46e-129 | 374 |
MS.gene025564.t1 | AT1G80240 | 50.152 | 329 | 163 | 1 | 34 | 361 | 32 | 360 | 2.63e-113 | 335 |
MS.gene025564.t1 | AT1G29980 | 41.765 | 340 | 188 | 2 | 34 | 363 | 7 | 346 | 4.20e-95 | 288 |
MS.gene025564.t1 | AT1G29980 | 41.765 | 340 | 188 | 2 | 34 | 363 | 43 | 382 | 1.26e-94 | 288 |
MS.gene025564.t1 | AT2G34510 | 42.262 | 336 | 188 | 2 | 34 | 363 | 43 | 378 | 4.58e-93 | 284 |
MS.gene025564.t1 | AT2G34510 | 43.493 | 292 | 159 | 2 | 78 | 363 | 1 | 292 | 7.73e-83 | 255 |
MS.gene025564.t1 | AT5G14150 | 26.316 | 380 | 233 | 13 | 9 | 367 | 8 | 361 | 6.60e-30 | 118 |
MS.gene025564.t1 | AT5G14150 | 26.316 | 380 | 233 | 13 | 9 | 367 | 8 | 361 | 6.60e-30 | 118 |
Find 104 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATACAAGGATTGATGATTT+TGG | 0.100468 | 4.3:-60757218 | MS.gene025564:CDS |
CCATTTGTTGTGTTGAAAAT+AGG | 0.110995 | 4.3:+60757623 | None:intergenic |
CTTTGAATCAATGAATTTAA+TGG | 0.135571 | 4.3:+60757529 | None:intergenic |
GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4.3:-60757678 | MS.gene025564:intron |
CTTAAAGTTTACTTTCAAAA+TGG | 0.174907 | 4.3:-60759413 | MS.gene025564:intron |
TTCATATTGTAGACTTTGTT+TGG | 0.243986 | 4.3:+60757422 | None:intergenic |
TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4.3:-60758979 | MS.gene025564:CDS |
CATTTGTTGTGTTGAAAATA+GGG | 0.280881 | 4.3:+60757624 | None:intergenic |
GCATGAACTCCATGTGATAC+TGG | 0.289540 | 4.3:+60759254 | None:intergenic |
CTTCTTGAACACCAGGGTTA+TGG | 0.309644 | 4.3:+60759003 | None:intergenic |
CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4.3:-60759176 | MS.gene025564:CDS |
AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4.3:-60757323 | MS.gene025564:CDS |
AATGAATTTAATGGCTTTGA+GGG | 0.333087 | 4.3:+60757538 | None:intergenic |
TAGACCGTTGATTTCCCATT+TGG | 0.339085 | 4.3:+60759322 | None:intergenic |
CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.3:-60759063 | MS.gene025564:CDS |
AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4.3:-60757509 | MS.gene025564:CDS |
TCCTTTATGAATCGTGAGTT+TGG | 0.357169 | 4.3:+60759374 | None:intergenic |
ATTCTAGTTGTGTCTGAAAC+TGG | 0.357364 | 4.3:+60757263 | None:intergenic |
ATCTCAGTGCCTCCACAATC+TGG | 0.371493 | 4.3:-60759116 | MS.gene025564:CDS |
GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4.3:+60757587 | None:intergenic |
TCATATTGTAGACTTTGTTT+GGG | 0.392187 | 4.3:+60757423 | None:intergenic |
TTCCAAGTGCCATTTGGAAA+TGG | 0.398171 | 4.3:-60757503 | MS.gene025564:CDS |
TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4.3:-60757571 | MS.gene025564:CDS |
TTAAAGTTTACTTTCAAAAT+GGG | 0.399296 | 4.3:-60759412 | MS.gene025564:intron |
TACCTTGATGGTTTGGGAGA+TGG | 0.400648 | 4.3:+60759208 | None:intergenic |
GCCAAACTCACGATTCATAA+AGG | 0.406787 | 4.3:-60759375 | MS.gene025564:CDS |
GGAGCAGTGGAGCTTGTTGC+AGG | 0.407672 | 4.3:-60757482 | MS.gene025564:CDS |
TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.3:-60759054 | MS.gene025564:CDS |
CAATGAATTTAATGGCTTTG+AGG | 0.411192 | 4.3:+60757537 | None:intergenic |
AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4.3:+60760547 | None:intergenic |
CTCCATTTCCAAATGGCACT+TGG | 0.418379 | 4.3:+60757501 | None:intergenic |
ACAATTGGAGATGGAAGAAA+TGG | 0.425275 | 4.3:-60757395 | MS.gene025564:CDS |
ATAAAGGAAACAAGACTCAT+TGG | 0.425904 | 4.3:-60759359 | MS.gene025564:CDS |
TACAATATGAAATTCACAAT+TGG | 0.427534 | 4.3:-60757410 | MS.gene025564:CDS |
CAAACACTTTATAGCCTCAA+TGG | 0.432645 | 4.3:-60759080 | MS.gene025564:CDS |
AGACCGTTGATTTCCCATTT+GGG | 0.446383 | 4.3:+60759323 | None:intergenic |
CATTGTTCATTACCTCTTGT+CGG | 0.452200 | 4.3:+60758921 | None:intergenic |
GGAAACATGCTCTTCCCAAA+TGG | 0.452234 | 4.3:-60759337 | MS.gene025564:CDS |
ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4.3:+60757590 | None:intergenic |
CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4.3:-60757317 | MS.gene025564:CDS |
AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.3:+60759278 | None:intergenic |
AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4.3:+60757155 | None:intergenic |
TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.3:+60758930 | None:intergenic |
GAAACATGCTCTTCCCAAAT+GGG | 0.472359 | 4.3:-60759336 | MS.gene025564:CDS |
ATCTCTGGAGGGCCACAACC+TGG | 0.481932 | 4.3:-60759290 | MS.gene025564:CDS |
TCATTACCTCTTGTCGGCAT+CGG | 0.487489 | 4.3:+60758927 | None:intergenic |
TAAAGGAAACAAGACTCATT+GGG | 0.502085 | 4.3:-60759358 | MS.gene025564:CDS |
ATGAAATTCACAATTGGAGA+TGG | 0.505665 | 4.3:-60757404 | MS.gene025564:CDS |
GGTCTAGTAGAATATATCTC+TGG | 0.505702 | 4.3:-60759305 | MS.gene025564:CDS |
CTCTAATATTAGGAGCATCT+AGG | 0.508622 | 4.3:-60759166 | MS.gene025564:CDS |
AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4.3:+60757647 | None:intergenic |
TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4.3:-60757318 | MS.gene025564:CDS |
TCAAGGTAAAACCTGGTCAA+TGG | 0.511526 | 4.3:-60759193 | MS.gene025564:CDS |
AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4.3:-60757477 | MS.gene025564:CDS |
TCCACTGCTCCATTTCCAAA+TGG | 0.515434 | 4.3:+60757494 | None:intergenic |
AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4.3:-60757654 | MS.gene025564:CDS |
TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4.3:+60757563 | None:intergenic |
ATAGTTCTTTCTATCATACA+AGG | 0.521613 | 4.3:-60757232 | MS.gene025564:CDS |
AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4.3:+60757557 | None:intergenic |
GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4.3:-60757665 | MS.gene025564:CDS |
GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4.3:-60759242 | MS.gene025564:CDS |
CTTGATGGTTTGGGAGATGG+AGG | 0.530795 | 4.3:+60759211 | None:intergenic |
CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4.3:+60757317 | None:intergenic |
AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.3:-60759062 | MS.gene025564:CDS |
GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4.3:-60757575 | MS.gene025564:CDS |
ACTATAACTTGATCAAGGAC+AGG | 0.546115 | 4.3:+60757182 | None:intergenic |
CATGAACTCCATGTGATACT+GGG | 0.548593 | 4.3:+60759255 | None:intergenic |
ACAGCAACAGCATCCAAAAG+TGG | 0.554446 | 4.3:+60758966 | None:intergenic |
ACTGGGAAGAACATGCCTCC+AGG | 0.554594 | 4.3:+60759272 | None:intergenic |
CAAACCATCAAGGTAAAACC+TGG | 0.555483 | 4.3:-60759200 | MS.gene025564:CDS |
TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.3:+60758931 | None:intergenic |
CTCCATCTCCCAAACCATCA+AGG | 0.556000 | 4.3:-60759210 | MS.gene025564:CDS |
GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4.3:+60757629 | None:intergenic |
GTGATACTATAACTTGATCA+AGG | 0.568071 | 4.3:+60757177 | None:intergenic |
AGGCTATAAAGTGTTTGCAA+TGG | 0.572839 | 4.3:+60759086 | None:intergenic |
GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 4.3:+60758996 | None:intergenic |
AGGAAAGGGAACATTCAAAA+CGG | 0.577711 | 4.3:-60757303 | MS.gene025564:CDS |
ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4.3:+60759182 | None:intergenic |
TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.3:-60759064 | MS.gene025564:CDS |
TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.3:-60758933 | MS.gene025564:intron |
ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4.3:+60760548 | None:intergenic |
GATGGAAGAAATGGTTGTCA+TGG | 0.592806 | 4.3:-60757386 | MS.gene025564:CDS |
CTAGTAGAATATATCTCTGG+AGG | 0.595095 | 4.3:-60759302 | MS.gene025564:CDS |
CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4.3:-60757478 | MS.gene025564:CDS |
TGTTCTTAGAATTTGTGCAA+TGG | 0.605383 | 4.3:+60757448 | None:intergenic |
ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4.3:+60757648 | None:intergenic |
AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4.3:-60757653 | MS.gene025564:CDS |
GCCATTTGGAAATGGAGCAG+TGG | 0.618905 | 4.3:-60757495 | MS.gene025564:CDS |
AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.3:+60759066 | None:intergenic |
TGGTTGTCATGGATCAATGA+TGG | 0.622229 | 4.3:-60757375 | MS.gene025564:CDS |
CTTCCCAAATGGGAAATCAA+CGG | 0.627636 | 4.3:-60759326 | MS.gene025564:CDS |
AATGGAACATCTCCAGATTG+TGG | 0.633301 | 4.3:+60759104 | None:intergenic |
TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4.3:+60758978 | None:intergenic |
AAAGTTACATTCCATAACCC+TGG | 0.644128 | 4.3:-60759014 | MS.gene025564:CDS |
CTATAACTTGATCAAGGACA+GGG | 0.647070 | 4.3:+60757183 | None:intergenic |
GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 4.3:-60758990 | MS.gene025564:CDS |
CATACGCTAATGTTCATCCC+AGG | 0.652732 | 4.3:-60760565 | MS.gene025564:CDS |
GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4.3:-60760554 | MS.gene025564:intron |
GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4.3:+60757558 | None:intergenic |
TAGTAGAATATATCTCTGGA+GGG | 0.660581 | 4.3:-60759301 | MS.gene025564:CDS |
ATGTTCTTCCCAGTATCACA+TGG | 0.682236 | 4.3:-60759263 | MS.gene025564:CDS |
GGAACATCTCCAGATTGTGG+AGG | 0.689801 | 4.3:+60759107 | None:intergenic |
TCTGGAGGGCCACAACCTGG+AGG | 0.701197 | 4.3:-60759287 | MS.gene025564:CDS |
TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 4.3:+60758997 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTATAATATTTTGTTG+GGG | + | chr4.3:60758298-60758317 | None:intergenic | 10.0% |
!!! | ATCTAAATCTTTTTTTTTAT+AGG | + | chr4.3:60757972-60757991 | None:intergenic | 10.0% |
!!! | GTAAAAAAATATTTTTTTGA+GGG | + | chr4.3:60759437-60759456 | None:intergenic | 10.0% |
!!! | TCTAAATCTTTTTTTTTATA+GGG | + | chr4.3:60757971-60757990 | None:intergenic | 10.0% |
!!! | TGTAAAAAAATATTTTTTTG+AGG | + | chr4.3:60759438-60759457 | None:intergenic | 10.0% |
!! | AAAACAAAAAACATAAAGAT+TGG | + | chr4.3:60758348-60758367 | None:intergenic | 15.0% |
!! | AAATATAATATTTCATGTAG+AGG | + | chr4.3:60759028-60759047 | None:intergenic | 15.0% |
!! | AGTGATATGTAAAAAAAAAT+TGG | + | chr4.3:60759183-60759202 | None:intergenic | 15.0% |
!! | ATATGTAAAAAAAAATTGGA+GGG | + | chr4.3:60759179-60759198 | None:intergenic | 15.0% |
!! | TTAAAGTTTACTTTCAAAAT+GGG | - | chr4.3:60758374-60758393 | MS.gene025564:intron | 15.0% |
!! | TTTAGTTACAAAAATAATTC+AGG | + | chr4.3:60759392-60759411 | None:intergenic | 15.0% |
!!! | AAAAATAATTCAGGTTTAAA+AGG | + | chr4.3:60759383-60759402 | None:intergenic | 15.0% |
!!! | ATTAACCTATTTACTTTTTT+TGG | - | chr4.3:60760018-60760037 | MS.gene025564:intron | 15.0% |
!!! | ATTTTGAAAGTAAACTTTAA+GGG | + | chr4.3:60758374-60758393 | None:intergenic | 15.0% |
!!! | CTTAATTACCTTTTTATATA+AGG | - | chr4.3:60759982-60760001 | MS.gene025564:intron | 15.0% |
!!! | CTTGATAATTTTTTGAAAAT+TGG | + | chr4.3:60760072-60760091 | None:intergenic | 15.0% |
!!! | TAATTCAGTTATTTTTTTGA+GGG | + | chr4.3:60759961-60759980 | None:intergenic | 15.0% |
!!! | TATTTTCTCAAAATTACTAT+TGG | - | chr4.3:60757505-60757524 | MS.gene025564:CDS | 15.0% |
!!! | TTAACCTATTTACTTTTTTT+GGG | - | chr4.3:60760019-60760038 | MS.gene025564:intron | 15.0% |
!!! | TTAATTCAGTTATTTTTTTG+AGG | + | chr4.3:60759962-60759981 | None:intergenic | 15.0% |
!! | CTTAAAGTTTACTTTCAAAA+TGG | - | chr4.3:60758373-60758392 | MS.gene025564:intron | 20.0% |
!! | CTTTGAATCAATGAATTTAA+TGG | + | chr4.3:60760260-60760279 | None:intergenic | 20.0% |
!! | GATATGTAAAAAAAAATTGG+AGG | + | chr4.3:60759180-60759199 | None:intergenic | 20.0% |
!! | GTATTCATTACAACAAAATA+GGG | - | chr4.3:60757897-60757916 | MS.gene025564:intron | 20.0% |
!! | TACAATATGAAATTCACAAT+TGG | - | chr4.3:60760376-60760395 | MS.gene025564:intron | 20.0% |
!! | TACTAGTAACAAATATGAAT+TGG | + | chr4.3:60757279-60757298 | None:intergenic | 20.0% |
!! | TGTATTCATTACAACAAAAT+AGG | - | chr4.3:60757896-60757915 | MS.gene025564:intron | 20.0% |
!!! | AAGAGAATATTTCTACTTTT+TGG | + | chr4.3:60757828-60757847 | None:intergenic | 20.0% |
!!! | CATTTTGAAAGTAAACTTTA+AGG | + | chr4.3:60758375-60758394 | None:intergenic | 20.0% |
!!! | TTTTGAAAGTAAACTTTAAG+GGG | + | chr4.3:60758373-60758392 | None:intergenic | 20.0% |
!!! | TTTTTTATAAGGACTAAAAC+CGG | - | chr4.3:60758235-60758254 | MS.gene025564:intron | 20.0% |
!!! | TTTTTTGAGGGAAATAATTA+AGG | + | chr4.3:60759425-60759444 | None:intergenic | 20.0% |
! | AAAGTTCCTTTCAAATCTTT+AGG | - | chr4.3:60760463-60760482 | MS.gene025564:intron | 25.0% |
! | AAATGTAGTCAAATTTGTGA+CGG | + | chr4.3:60757477-60757496 | None:intergenic | 25.0% |
! | AATACTGTTGAAGATTATGA+TGG | - | chr4.3:60759125-60759144 | MS.gene025564:CDS | 25.0% |
! | ACCAAATTATCTGCAAATAT+AGG | + | chr4.3:60760112-60760131 | None:intergenic | 25.0% |
! | ACTTCCCAAAAAAAGTAAAT+AGG | + | chr4.3:60760026-60760045 | None:intergenic | 25.0% |
! | ATACTGTTGAAGATTATGAT+GGG | - | chr4.3:60759126-60759145 | MS.gene025564:CDS | 25.0% |
! | ATAGTTCTTTCTATCATACA+AGG | - | chr4.3:60760554-60760573 | MS.gene025564:intron | 25.0% |
! | TAATGTTGAATTGTTGTGAT+TGG | - | chr4.3:60758939-60758958 | MS.gene025564:CDS | 25.0% |
! | TATGTCTTGAATATTATGCT+TGG | + | chr4.3:60757713-60757732 | None:intergenic | 25.0% |
! | TGAATAGAGTGTATTAACAT+TGG | - | chr4.3:60759090-60759109 | MS.gene025564:CDS | 25.0% |
! | TTCATATTGTAGACTTTGTT+TGG | + | chr4.3:60760367-60760386 | None:intergenic | 25.0% |
! | TTGTAAGTTTAGCAAAATCA+TGG | - | chr4.3:60757599-60757618 | MS.gene025564:CDS | 25.0% |
! | TTGTAGCTCCTTATATAAAA+AGG | + | chr4.3:60759993-60760012 | None:intergenic | 25.0% |
!! | ATTTCAAATTCCTTCACTTT+TGG | - | chr4.3:60758108-60758127 | MS.gene025564:intron | 25.0% |
!! | ATTTCATATTCTTCCACTTT+TGG | + | chr4.3:60758189-60758208 | None:intergenic | 25.0% |
!! | TCATATTGTAGACTTTGTTT+GGG | + | chr4.3:60760366-60760385 | None:intergenic | 25.0% |
!! | TGAAGGAATTTGAAATTACA+GGG | + | chr4.3:60758104-60758123 | None:intergenic | 25.0% |
!! | TTTGAAAGTAAACTTTAAGG+GGG | + | chr4.3:60758372-60758391 | None:intergenic | 25.0% |
!!! | AATGAATTTAATGGCTTTGA+GGG | + | chr4.3:60760251-60760270 | None:intergenic | 25.0% |
!!! | CATTTGTTGTGTTGAAAATA+GGG | + | chr4.3:60760165-60760184 | None:intergenic | 25.0% |
!!! | TTTTTTATAGGGACTAAAAC+CGG | + | chr4.3:60757960-60757979 | None:intergenic | 25.0% |
AATGTCCATTTATCTGCAAA+AGG | - | chr4.3:60758884-60758903 | MS.gene025564:intron | 30.0% | |
ATAAAGGAAACAAGACTCAT+TGG | - | chr4.3:60758427-60758446 | MS.gene025564:intron | 30.0% | |
ATACATGGCATGTAAAATGA+GGG | + | chr4.3:60758135-60758154 | None:intergenic | 30.0% | |
ATATTAACAGAATCACCGAA+AGG | + | chr4.3:60757744-60757763 | None:intergenic | 30.0% | |
ATGAAATTCACAATTGGAGA+TGG | - | chr4.3:60760382-60760401 | MS.gene025564:intron | 30.0% | |
CAATGGTATGCTCTAATATT+AGG | - | chr4.3:60758610-60758629 | MS.gene025564:intron | 30.0% | |
CATAAAGATTGGATCAGAAA+AGG | + | chr4.3:60758337-60758356 | None:intergenic | 30.0% | |
CCTGTAATATTAGTGAATTC+CGG | + | chr4.3:60758257-60758276 | None:intergenic | 30.0% | |
CGGAATTCACTAATATTACA+GGG | - | chr4.3:60758255-60758274 | MS.gene025564:intron | 30.0% | |
CTTGAATATTATGCTTGGAT+CGG | + | chr4.3:60757708-60757727 | None:intergenic | 30.0% | |
GCCTATATTTGCAGATAATT+TGG | - | chr4.3:60760108-60760127 | MS.gene025564:intron | 30.0% | |
GTGATACTATAACTTGATCA+AGG | + | chr4.3:60760612-60760631 | None:intergenic | 30.0% | |
GTGGAAGAATATGAAATTAC+AGG | - | chr4.3:60758192-60758211 | MS.gene025564:intron | 30.0% | |
TAAAGGAAACAAGACTCATT+GGG | - | chr4.3:60758428-60758447 | MS.gene025564:intron | 30.0% | |
TAAGTTTAGCAAAATCATGG+TGG | - | chr4.3:60757602-60757621 | MS.gene025564:CDS | 30.0% | |
TAGTAGAATATATCTCTGGA+GGG | - | chr4.3:60758485-60758504 | MS.gene025564:intron | 30.0% | |
TGTTCTTAGAATTTGTGCAA+TGG | + | chr4.3:60760341-60760360 | None:intergenic | 30.0% | |
! | ATTTCAGATTCTTCCACTTT+TGG | - | chr4.3:60758004-60758023 | MS.gene025564:intron | 30.0% |
! | CAATGAATTTAATGGCTTTG+AGG | + | chr4.3:60760252-60760271 | None:intergenic | 30.0% |
! | CCTATTTTCAACACAACAAA+TGG | - | chr4.3:60760163-60760182 | MS.gene025564:intron | 30.0% |
! | CCTTTCAAATCTTTAGGAAA+GGG | - | chr4.3:60760469-60760488 | MS.gene025564:intron | 30.0% |
! | CTCAGTGTGATTTTTCTAAT+GGG | - | chr4.3:60757764-60757783 | MS.gene025564:intron | 30.0% |
! | GTGAAGGAATTTGAAATTAC+AGG | + | chr4.3:60758105-60758124 | None:intergenic | 30.0% |
! | TCCTTTCAAATCTTTAGGAA+AGG | - | chr4.3:60760468-60760487 | MS.gene025564:intron | 30.0% |
! | TCTCAGTGTGATTTTTCTAA+TGG | - | chr4.3:60757763-60757782 | MS.gene025564:intron | 30.0% |
! | TGGAAGAATCTGAAATTACA+GGG | + | chr4.3:60758000-60758019 | None:intergenic | 30.0% |
!! | ACAAGTTGATTTGTTGAGAT+TGG | + | chr4.3:60758916-60758935 | None:intergenic | 30.0% |
!! | CATACAAGGATTGATGATTT+TGG | - | chr4.3:60760568-60760587 | MS.gene025564:CDS | 30.0% |
!! | CCATTTGTTGTGTTGAAAAT+AGG | + | chr4.3:60760166-60760185 | None:intergenic | 30.0% |
!! | TCATGTTAACTTGTGTCTTA+AGG | - | chr4.3:60757787-60757806 | MS.gene025564:intron | 30.0% |
AAAGTTACATTCCATAACCC+TGG | - | chr4.3:60758772-60758791 | MS.gene025564:intron | 35.0% | |
AAATTACAGGGACCAAAAGT+GGG | + | chr4.3:60758092-60758111 | None:intergenic | 35.0% | |
AAGCAATAACATCACCATTG+AGG | + | chr4.3:60758723-60758742 | None:intergenic | 35.0% | |
AATATTACAGGGACGAAAAG+AGG | - | chr4.3:60758266-60758285 | MS.gene025564:intron | 35.0% | |
ACAATTGGAGATGGAAGAAA+TGG | - | chr4.3:60760391-60760410 | MS.gene025564:intron | 35.0% | |
ACACTTCATATCAGACATGT+TGG | - | chr4.3:60757431-60757450 | MS.gene025564:CDS | 35.0% | |
ACTATAACTTGATCAAGGAC+AGG | + | chr4.3:60760607-60760626 | None:intergenic | 35.0% | |
AGGAAAGGGAACATTCAAAA+CGG | - | chr4.3:60760483-60760502 | MS.gene025564:intron | 35.0% | |
CAAACACTTTATAGCCTCAA+TGG | - | chr4.3:60758706-60758725 | MS.gene025564:intron | 35.0% | |
CATACATGGCATGTAAAATG+AGG | + | chr4.3:60758136-60758155 | None:intergenic | 35.0% | |
CATTGTTCATTACCTCTTGT+CGG | + | chr4.3:60758868-60758887 | None:intergenic | 35.0% | |
CCACTTTCAAAAACATGAGT+GGG | + | chr4.3:60757382-60757401 | None:intergenic | 35.0% | |
CCCTTTCCTAAAGATTTGAA+AGG | + | chr4.3:60760472-60760491 | None:intergenic | 35.0% | |
CCGGAATTCACTAATATTAC+AGG | - | chr4.3:60758254-60758273 | MS.gene025564:intron | 35.0% | |
CTAGTAGAATATATCTCTGG+AGG | - | chr4.3:60758484-60758503 | MS.gene025564:intron | 35.0% | |
CTATAACTTGATCAAGGACA+GGG | + | chr4.3:60760606-60760625 | None:intergenic | 35.0% | |
GATAATTTGGTAAGAAACCC+TGG | - | chr4.3:60760121-60760140 | MS.gene025564:intron | 35.0% | |
GGTCTAGTAGAATATATCTC+TGG | - | chr4.3:60758481-60758500 | MS.gene025564:intron | 35.0% | |
GTTGTGTTGAAAATAGGGAA+TGG | + | chr4.3:60760160-60760179 | None:intergenic | 35.0% | |
TAGAGTTGAACATTACCTTC+TGG | + | chr4.3:60757250-60757269 | None:intergenic | 35.0% | |
TCCTTTATGAATCGTGAGTT+TGG | + | chr4.3:60758415-60758434 | None:intergenic | 35.0% | |
! | AAGAATTTCCAAGTGCCATT+TGG | - | chr4.3:60760277-60760296 | MS.gene025564:intron | 35.0% |
! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.3:60758724-60758743 | MS.gene025564:intron | 35.0% |
! | AGGCTATAAAGTGTTTGCAA+TGG | + | chr4.3:60758703-60758722 | None:intergenic | 35.0% |
! | ATTCTAGTTGTGTCTGAAAC+TGG | + | chr4.3:60760526-60760545 | None:intergenic | 35.0% |
! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.3:60758723-60758742 | MS.gene025564:intron | 35.0% |
! | CTAGACCTTTTGCAGATAAA+TGG | + | chr4.3:60758892-60758911 | None:intergenic | 35.0% |
! | GATGATTTTGGATCTATGTG+TGG | - | chr4.3:60760580-60760599 | MS.gene025564:CDS | 35.0% |
! | GTGGAAGAATCTGAAATTAC+AGG | + | chr4.3:60758001-60758020 | None:intergenic | 35.0% |
! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.3:60758722-60758741 | MS.gene025564:intron | 35.0% |
!! | AGGTTTTACCTTGATGGTTT+GGG | + | chr4.3:60758587-60758606 | None:intergenic | 35.0% |
!! | CCACTCATGTTTTTGAAAGT+GGG | - | chr4.3:60757380-60757399 | MS.gene025564:CDS | 35.0% |
!! | CTCTAATATTAGGAGCATCT+AGG | - | chr4.3:60758620-60758639 | MS.gene025564:intron | 35.0% |
AAATGAGGGACCAAAAGTGA+AGG | + | chr4.3:60758121-60758140 | None:intergenic | 40.0% | |
AAGAAAGGATGGACCAAAAG+TGG | + | chr4.3:60758020-60758039 | None:intergenic | 40.0% | |
AATATTCCAGGGACGAAAAG+AGG | + | chr4.3:60757929-60757948 | None:intergenic | 40.0% | |
AATGGAACATCTCCAGATTG+TGG | + | chr4.3:60758685-60758704 | None:intergenic | 40.0% | |
AATTCTGCTGACGTGAAGAA+AGG | + | chr4.3:60758035-60758054 | None:intergenic | 40.0% | |
AGACATATGTGTGCTCCTTT+CGG | - | chr4.3:60757726-60757745 | MS.gene025564:intron | 40.0% | |
ATGTTCTTCCCAGTATCACA+TGG | - | chr4.3:60758523-60758542 | MS.gene025564:intron | 40.0% | |
ATTAGAGCATACCATTGACC+AGG | + | chr4.3:60758607-60758626 | None:intergenic | 40.0% | |
CAAACCATCAAGGTAAAACC+TGG | - | chr4.3:60758586-60758605 | MS.gene025564:intron | 40.0% | |
CATGAACTCCATGTGATACT+GGG | + | chr4.3:60758534-60758553 | None:intergenic | 40.0% | |
CCCACTTTCAAAAACATGAG+TGG | + | chr4.3:60757383-60757402 | None:intergenic | 40.0% | |
CCTGGAATATTAGCGAATTC+CGG | - | chr4.3:60757938-60757957 | MS.gene025564:intron | 40.0% | |
CGGAATTCGCTAATATTCCA+GGG | + | chr4.3:60757940-60757959 | None:intergenic | 40.0% | |
CTTCCCAAATGGGAAATCAA+CGG | - | chr4.3:60758460-60758479 | MS.gene025564:intron | 40.0% | |
GAAACATGCTCTTCCCAAAT+GGG | - | chr4.3:60758450-60758469 | MS.gene025564:intron | 40.0% | |
GAAATTACAGGGACCAAAAG+TGG | + | chr4.3:60758093-60758112 | None:intergenic | 40.0% | |
GAATATTATGCTTGGATCGG+AGG | + | chr4.3:60757705-60757724 | None:intergenic | 40.0% | |
GATGGAAGAAATGGTTGTCA+TGG | - | chr4.3:60760400-60760419 | MS.gene025564:intron | 40.0% | |
GCCAAACTCACGATTCATAA+AGG | - | chr4.3:60758411-60758430 | MS.gene025564:intron | 40.0% | |
GTAAAATGAGGGACCAAAAG+TGG | - | chr4.3:60758173-60758192 | MS.gene025564:intron | 40.0% | |
GTCAGCAAAATCTGCATACA+TGG | + | chr4.3:60758150-60758169 | None:intergenic | 40.0% | |
GTTCAAGAAGATCCTACTTG+TGG | - | chr4.3:60758796-60758815 | MS.gene025564:intron | 40.0% | |
TAGGATCTTCTTGAACACCA+GGG | + | chr4.3:60758792-60758811 | None:intergenic | 40.0% | |
TCAAGGTAAAACCTGGTCAA+TGG | - | chr4.3:60758593-60758612 | MS.gene025564:intron | 40.0% | |
TGGTTGTCATGGATCAATGA+TGG | - | chr4.3:60760411-60760430 | MS.gene025564:intron | 40.0% | |
TGTTATTGCTTGGGGATTCA+AGG | - | chr4.3:60758732-60758751 | MS.gene025564:intron | 40.0% | |
TTGCTGACGTGGTAAAATGA+GGG | - | chr4.3:60758162-60758181 | MS.gene025564:intron | 40.0% | |
TTTGCTGACGTGGTAAAATG+AGG | - | chr4.3:60758161-60758180 | MS.gene025564:intron | 40.0% | |
! | GACACAAGATCTTGTTGCTT+TGG | + | chr4.3:60760202-60760221 | None:intergenic | 40.0% |
! | GGGAGGAATCTGAAATTACA+GGG | + | chr4.3:60758072-60758091 | None:intergenic | 40.0% |
! | TGGGAGGAATCTGAAATTAC+AGG | + | chr4.3:60758073-60758092 | None:intergenic | 40.0% |
! | TTAATACCTCTTTTCGTCCC+TGG | - | chr4.3:60757920-60757939 | MS.gene025564:intron | 40.0% |
! | TTGACCAGGTTTTACCTTGA+TGG | + | chr4.3:60758593-60758612 | None:intergenic | 40.0% |
! | TTTCAGATTCCTCCCACTTT+TGG | - | chr4.3:60758077-60758096 | MS.gene025564:intron | 40.0% |
!! | ACAAGATCTTGTTGCTTTGG+AGG | + | chr4.3:60760199-60760218 | None:intergenic | 40.0% |
!! | ACAGTGAATCACTGTCGTTT+TGG | + | chr4.3:60757666-60757685 | None:intergenic | 40.0% |
!! | AGACCGTTGATTTCCCATTT+GGG | + | chr4.3:60758466-60758485 | None:intergenic | 40.0% |
!! | CAGGTTTTACCTTGATGGTT+TGG | + | chr4.3:60758588-60758607 | None:intergenic | 40.0% |
!! | CCCACTCATGTTTTTGAAAG+TGG | - | chr4.3:60757379-60757398 | MS.gene025564:CDS | 40.0% |
!! | TAGACCGTTGATTTCCCATT+TGG | + | chr4.3:60758467-60758486 | None:intergenic | 40.0% |
!! | TTCCAAGTGCCATTTGGAAA+TGG | - | chr4.3:60760283-60760302 | MS.gene025564:intron | 40.0% |
AACATTACCTTCTGGTGACC+TGG | + | chr4.3:60757242-60757261 | None:intergenic | 45.0% | |
ACAGCAACAGCATCCAAAAG+TGG | + | chr4.3:60758823-60758842 | None:intergenic | 45.0% | |
ACATTACCTTCTGGTGACCT+GGG | + | chr4.3:60757241-60757260 | None:intergenic | 45.0% | |
AGACATGTCAGTGTTGTGTC+TGG | - | chr4.3:60757531-60757550 | MS.gene025564:CDS | 45.0% | |
AGGGATTCAATAATCCAGCC+AGG | + | chr4.3:60760232-60760251 | None:intergenic | 45.0% | |
CATACGCTAATGTTCATCCC+AGG | - | chr4.3:60757221-60757240 | MS.gene025564:CDS | 45.0% | |
CCGGAATTCGCTAATATTCC+AGG | + | chr4.3:60757941-60757960 | None:intergenic | 45.0% | |
CTCCATTTCCAAATGGCACT+TGG | + | chr4.3:60760288-60760307 | None:intergenic | 45.0% | |
CTTCTTGAACACCAGGGTTA+TGG | + | chr4.3:60758786-60758805 | None:intergenic | 45.0% | |
GCATGAACTCCATGTGATAC+TGG | + | chr4.3:60758535-60758554 | None:intergenic | 45.0% | |
GGAAACATGCTCTTCCCAAA+TGG | - | chr4.3:60758449-60758468 | MS.gene025564:intron | 45.0% | |
GGAGTTCATGCAGTTAGACT+TGG | - | chr4.3:60758544-60758563 | MS.gene025564:intron | 45.0% | |
GGGATTCAATAATCCAGCCA+GGG | + | chr4.3:60760231-60760250 | None:intergenic | 45.0% | |
GTAGGATCTTCTTGAACACC+AGG | + | chr4.3:60758793-60758812 | None:intergenic | 45.0% | |
TCATTACCTCTTGTCGGCAT+CGG | + | chr4.3:60758862-60758881 | None:intergenic | 45.0% | |
TCCAAAAGTGGACCACAAGT+AGG | + | chr4.3:60758811-60758830 | None:intergenic | 45.0% | |
TCCACTGCTCCATTTCCAAA+TGG | + | chr4.3:60760295-60760314 | None:intergenic | 45.0% | |
! | ATGAAGTGTTCGTGCTACAG+AGG | + | chr4.3:60757420-60757439 | None:intergenic | 45.0% |
! | GTATGCAGATTTTGCTGACG+TGG | - | chr4.3:60758151-60758170 | MS.gene025564:intron | 45.0% |
! | TACCTTGATGGTTTGGGAGA+TGG | + | chr4.3:60758581-60758600 | None:intergenic | 45.0% |
! | TCCTACTTGTGGTCCACTTT+TGG | - | chr4.3:60758807-60758826 | MS.gene025564:intron | 45.0% |
!! | AAGAAACCCTGGCTTTGAAG+AGG | - | chr4.3:60760132-60760151 | MS.gene025564:intron | 45.0% |
!! | AGAAACCCTGGCTTTGAAGA+GGG | - | chr4.3:60760133-60760152 | MS.gene025564:intron | 45.0% |
!! | AATAAAATAATAAACAATTA+AGG | - | chr4.3:60759315-60759334 | MS.gene025564:CDS | 5.0% |
!! | ATAAAATAATAAACAATTAA+GGG | - | chr4.3:60759316-60759335 | MS.gene025564:CDS | 5.0% |
!!! | TAAAATTATAATATTTTGTT+GGG | + | chr4.3:60758299-60758318 | None:intergenic | 5.0% |
!!! | TAAATCTTTTTTTTTTTATA+AGG | - | chr4.3:60758224-60758243 | MS.gene025564:intron | 5.0% |
!!! | TTAAAATTATAATATTTTGT+TGG | + | chr4.3:60758300-60758319 | None:intergenic | 5.0% |
AAGAACATGCCTCCAGGTTG+TGG | + | chr4.3:60758511-60758530 | None:intergenic | 50.0% | |
AATGGACCCTCTTCAAAGCC+AGG | + | chr4.3:60760142-60760161 | None:intergenic | 50.0% | |
ATCTCAGTGCCTCCACAATC+TGG | - | chr4.3:60758670-60758689 | MS.gene025564:intron | 50.0% | |
ATGGACCCTCTTCAAAGCCA+GGG | + | chr4.3:60760141-60760160 | None:intergenic | 50.0% | |
CTCCATCTCCCAAACCATCA+AGG | - | chr4.3:60758576-60758595 | MS.gene025564:intron | 50.0% | |
CTGCTGACGTGAAGAAAGGA+TGG | + | chr4.3:60758031-60758050 | None:intergenic | 50.0% | |
GCCATTTGGAAATGGAGCAG+TGG | - | chr4.3:60760291-60760310 | MS.gene025564:intron | 50.0% | |
GGAACATCTCCAGATTGTGG+AGG | + | chr4.3:60758682-60758701 | None:intergenic | 50.0% | |
TCAATAATCCAGCCAGGGAG+TGG | + | chr4.3:60760226-60760245 | None:intergenic | 50.0% | |
TTACAGGGACCAAAAGTGGG+AGG | + | chr4.3:60758089-60758108 | None:intergenic | 50.0% | |
! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4.3:60758578-60758597 | None:intergenic | 50.0% |
!! | AGTGGAGCTTGTTGCAGGTA+GGG | - | chr4.3:60760309-60760328 | MS.gene025564:intron | 50.0% |
ACTGGGAAGAACATGCCTCC+AGG | + | chr4.3:60758517-60758536 | None:intergenic | 55.0% | |
GATCTTGTGTCACCACTCCC+TGG | - | chr4.3:60760211-60760230 | MS.gene025564:intron | 55.0% | |
GTTCATCCCAGGTCACCAGA+AGG | - | chr4.3:60757232-60757251 | MS.gene025564:CDS | 55.0% | |
! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.3:60758858-60758877 | None:intergenic | 55.0% |
! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.3:60758859-60758878 | None:intergenic | 55.0% |
!! | CAGTGGAGCTTGTTGCAGGT+AGG | - | chr4.3:60760308-60760327 | MS.gene025564:intron | 55.0% |
TACCCTCCGATGCCGACAAG+AGG | - | chr4.3:60758853-60758872 | MS.gene025564:intron | 60.0% | |
TTGTGTCACCACTCCCTGGC+TGG | - | chr4.3:60760215-60760234 | MS.gene025564:intron | 60.0% | |
! | ATCTCTGGAGGGCCACAACC+TGG | - | chr4.3:60758496-60758515 | MS.gene025564:intron | 60.0% |
!! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.3:60760304-60760323 | MS.gene025564:intron | 60.0% |
TCTGGAGGGCCACAACCTGG+AGG | - | chr4.3:60758499-60758518 | MS.gene025564:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 60757166 | 60760642 | 60757166 | ID=MS.gene025564 |
chr4.3 | mRNA | 60757166 | 60760642 | 60757166 | ID=MS.gene025564.t1;Parent=MS.gene025564 |
chr4.3 | exon | 60760555 | 60760642 | 60760555 | ID=MS.gene025564.t1.exon1;Parent=MS.gene025564.t1 |
chr4.3 | CDS | 60760555 | 60760642 | 60760555 | ID=cds.MS.gene025564.t1;Parent=MS.gene025564.t1 |
chr4.3 | exon | 60758934 | 60759428 | 60758934 | ID=MS.gene025564.t1.exon2;Parent=MS.gene025564.t1 |
chr4.3 | CDS | 60758934 | 60759428 | 60758934 | ID=cds.MS.gene025564.t1;Parent=MS.gene025564.t1 |
chr4.3 | exon | 60757166 | 60757686 | 60757166 | ID=MS.gene025564.t1.exon3;Parent=MS.gene025564.t1 |
chr4.3 | CDS | 60757166 | 60757686 | 60757166 | ID=cds.MS.gene025564.t1;Parent=MS.gene025564.t1 |
Gene Sequence |
Protein sequence |