AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025743

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025743.t1 MTR_5g011250 98.286 350 6 0 3 352 7 356 0.0 706
MS.gene025743.t1 MTR_3g072810 45.266 338 167 6 3 338 5 326 8.15e-96 288
MS.gene025743.t1 MTR_5g059130 42.638 326 169 5 23 338 14 331 1.47e-84 259
MS.gene025743.t1 MTR_3g072820 41.369 336 185 5 3 338 6 329 1.07e-83 257
MS.gene025743.t1 MTR_4g015790 38.710 341 196 4 3 333 13 350 1.39e-83 258
MS.gene025743.t1 MTR_7g068650 37.048 332 205 3 3 333 14 342 5.49e-79 246
MS.gene025743.t1 MTR_5g059140 40.798 326 172 9 3 322 5 315 4.10e-75 235
MS.gene025743.t1 MTR_3g070860 37.349 332 199 5 3 333 14 337 1.83e-74 234
MS.gene025743.t1 MTR_5g082750 37.952 332 197 5 3 333 13 336 1.26e-73 232
MS.gene025743.t1 MTR_3g063180 34.218 339 202 7 3 334 9 333 5.26e-73 230
MS.gene025743.t1 MTR_7g062580 35.191 341 202 7 15 352 31 355 1.70e-69 222
MS.gene025743.t1 MTR_7g062570 34.211 342 208 7 13 352 29 355 1.69e-67 216
MS.gene025743.t1 MTR_7g062550 34.639 332 198 7 15 343 36 351 1.92e-65 211
MS.gene025743.t1 MTR_5g055820 35.588 340 202 7 4 341 13 337 2.06e-65 211
MS.gene025743.t1 MTR_7g062600 34.513 339 202 8 15 349 27 349 1.40e-64 209
MS.gene025743.t1 MTR_5g055900 34.365 323 196 6 4 325 13 320 2.24e-62 203
MS.gene025743.t1 MTR_8g064200 36.000 325 189 7 4 325 23 331 3.56e-62 202
MS.gene025743.t1 MTR_8g064200 36.000 325 189 7 4 325 18 326 3.69e-62 202
MS.gene025743.t1 MTR_5g055680 34.311 341 204 7 4 341 13 336 8.83e-62 201
MS.gene025743.t1 MTR_7g063730 33.431 341 208 7 15 352 40 364 1.69e-60 199
MS.gene025743.t1 MTR_5g048550 33.431 341 211 6 4 343 13 338 2.35e-60 197
MS.gene025743.t1 MTR_0328s0030 35.103 339 204 6 4 341 11 334 4.43e-60 197
MS.gene025743.t1 MTR_8g074070 35.739 291 171 6 42 327 51 330 7.41e-60 196
MS.gene025743.t1 MTR_8g074050 35.889 287 176 5 42 327 51 330 1.12e-59 196
MS.gene025743.t1 MTR_4g116010 34.426 305 183 8 22 322 28 319 3.51e-59 194
MS.gene025743.t1 MTR_5g048850 34.365 323 196 6 4 325 13 320 6.84e-59 194
MS.gene025743.t1 MTR_5g048470 33.146 356 212 8 4 348 18 358 1.23e-58 193
MS.gene025743.t1 MTR_3g091350 34.824 313 193 4 10 322 30 331 1.59e-58 193
MS.gene025743.t1 MTR_3g117420 34.495 287 180 5 42 327 51 330 3.82e-58 192
MS.gene025743.t1 MTR_7g102820 33.618 351 201 9 15 348 38 373 8.78e-58 192
MS.gene025743.t1 MTR_0009s0050 33.531 337 206 7 4 339 13 332 2.02e-57 190
MS.gene025743.t1 MTR_0009s0050 33.531 337 206 7 4 339 13 332 2.35e-57 190
MS.gene025743.t1 MTR_5g055690 33.138 341 213 6 4 343 13 339 2.76e-57 190
MS.gene025743.t1 MTR_5g032870 35.354 297 179 5 43 334 38 326 6.11e-57 189
MS.gene025743.t1 MTR_5g055800 33.333 339 209 6 4 341 13 335 9.11e-57 188
MS.gene025743.t1 MTR_5g048740 33.923 339 209 6 4 341 11 335 9.54e-57 188
MS.gene025743.t1 MTR_5g065010 34.043 329 199 8 10 335 11 324 2.80e-56 187
MS.gene025743.t1 MTR_0009s0480 34.056 323 197 6 4 325 12 319 3.66e-56 187
MS.gene025743.t1 MTR_2g437380 31.176 340 220 6 4 341 17 344 1.37e-55 186
MS.gene025743.t1 MTR_3g092890 36.538 312 175 10 10 315 8 302 2.34e-55 184
MS.gene025743.t1 MTR_7g045650 35.273 275 160 6 15 286 36 295 2.38e-55 184
MS.gene025743.t1 MTR_3g117485 31.889 323 212 5 4 325 13 328 2.44e-55 185
MS.gene025743.t1 MTR_5g048570 32.344 337 208 7 4 339 13 330 2.82e-55 184
MS.gene025743.t1 MTR_2g072890 31.667 360 215 9 4 349 17 359 4.89e-55 184
MS.gene025743.t1 MTR_1g033810 35.759 316 188 7 12 325 20 322 7.46e-55 184
MS.gene025743.t1 MTR_8g074070 35.395 291 153 8 42 327 51 311 8.85e-55 183
MS.gene025743.t1 MTR_3g091360 33.230 322 202 5 3 322 14 324 2.20e-54 182
MS.gene025743.t1 MTR_3g026150 31.034 348 222 8 4 348 24 356 3.87e-54 182
MS.gene025743.t1 MTR_1g062110 32.121 330 215 5 4 330 27 350 4.86e-54 182
MS.gene025743.t1 MTR_8g024120 33.333 318 197 7 9 325 12 315 1.03e-53 180
MS.gene025743.t1 MTR_2g072910 33.642 324 199 7 4 325 17 326 2.13e-53 180
MS.gene025743.t1 MTR_3g117485 35.039 254 160 4 73 325 7 256 6.72e-53 176
MS.gene025743.t1 MTR_5g032880 34.237 295 177 7 43 334 38 318 6.64e-52 182
MS.gene025743.t1 MTR_5g032880 33.333 318 195 6 43 351 376 685 2.09e-51 181
MS.gene025743.t1 MTR_8g075830 33.750 320 192 7 21 338 27 328 4.58e-51 174
MS.gene025743.t1 MTR_8g075890 34.062 320 191 8 21 338 27 328 8.74e-51 173
MS.gene025743.t1 MTR_3g088565 32.886 298 181 7 43 334 3 287 6.19e-50 169
MS.gene025743.t1 MTR_1g070120 29.674 337 218 9 10 342 10 331 7.71e-49 167
MS.gene025743.t1 MTR_1g070135 28.448 348 226 9 1 342 1 331 1.41e-48 167
MS.gene025743.t1 MTR_2g069190 33.234 337 206 9 4 336 33 354 2.01e-48 167
MS.gene025743.t1 MTR_3g058610 32.733 333 193 9 15 342 21 327 1.85e-47 164
MS.gene025743.t1 MTR_4g093840 30.063 316 206 6 14 325 34 338 3.09e-47 164
MS.gene025743.t1 MTR_8g009160 30.357 336 215 7 4 336 28 347 3.42e-47 164
MS.gene025743.t1 MTR_5g022020 31.692 325 201 11 19 338 20 328 6.62e-47 163
MS.gene025743.t1 MTR_2g437380 32.959 267 171 4 88 352 1 261 2.33e-46 159
MS.gene025743.t1 MTR_1g070085 31.232 349 217 9 10 348 9 344 3.02e-46 160
MS.gene025743.t1 MTR_1g070085 31.232 349 217 9 10 348 9 344 3.02e-46 160
MS.gene025743.t1 MTR_8g008930 32.993 294 186 5 43 333 60 345 4.30e-46 161
MS.gene025743.t1 MTR_3g096500 30.259 347 220 8 5 342 35 368 6.58e-46 161
MS.gene025743.t1 MTR_7g105070 32.659 346 206 11 1 337 22 349 8.78e-46 160
MS.gene025743.t1 MTR_1g034140 33.555 301 171 7 42 327 26 312 1.12e-45 159
MS.gene025743.t1 MTR_7g081710 29.697 330 218 8 6 334 16 332 1.43e-45 159
MS.gene025743.t1 MTR_1g102070 31.884 345 201 10 13 342 36 361 4.46e-45 159
MS.gene025743.t1 MTR_3g026150 33.730 252 160 4 98 348 8 253 4.89e-45 155
MS.gene025743.t1 MTR_5g048850 31.868 273 171 5 4 275 13 271 7.03e-45 155
MS.gene025743.t1 MTR_8g028435 33.220 295 185 7 43 334 60 345 1.13e-44 157
MS.gene025743.t1 MTR_4g087100 32.110 327 196 9 39 348 22 339 1.39e-44 156
MS.gene025743.t1 MTR_7g029655 33.036 336 190 10 4 325 28 342 1.85e-44 157
MS.gene025743.t1 MTR_1g034120 28.863 343 210 9 12 334 1 329 4.26e-44 155
MS.gene025743.t1 MTR_1g081840 29.942 344 208 8 14 343 32 356 4.82e-44 155
MS.gene025743.t1 MTR_8g009110 29.762 336 218 8 4 336 28 348 5.13e-44 155
MS.gene025743.t1 MTR_2g069210 30.539 334 215 7 4 334 29 348 9.07e-44 155
MS.gene025743.t1 MTR_6g464620 31.686 344 211 9 9 342 37 366 1.70e-43 154
MS.gene025743.t1 MTR_2g069090 31.454 337 213 9 4 336 33 355 1.84e-43 154
MS.gene025743.t1 MTR_8g009090 31.849 292 187 6 43 331 60 342 2.09e-43 154
MS.gene025743.t1 MTR_2g025120 31.119 286 183 5 44 328 5 277 2.15e-43 152
MS.gene025743.t1 MTR_5g085330 32.542 295 182 6 44 334 6 287 2.64e-43 152
MS.gene025743.t1 MTR_2g068840 32.229 332 195 10 4 325 22 333 2.96e-43 153
MS.gene025743.t1 MTR_2g069010 27.988 343 225 9 4 338 33 361 6.34e-43 153
MS.gene025743.t1 MTR_4g117880 32.313 294 188 7 43 333 60 345 8.62e-43 152
MS.gene025743.t1 MTR_3g088745 30.702 342 210 9 13 343 14 339 1.25e-42 152
MS.gene025743.t1 MTR_4g087090 32.333 300 174 8 43 325 30 317 1.27e-42 151
MS.gene025743.t1 MTR_1g034060 28.571 343 211 9 12 334 1 329 1.29e-42 151
MS.gene025743.t1 MTR_3g045230 29.885 348 222 10 4 347 18 347 1.38e-42 151
MS.gene025743.t1 MTR_0009s0480 31.365 271 171 5 4 273 12 268 1.49e-42 149
MS.gene025743.t1 MTR_4g087110 32.166 314 187 11 39 334 22 327 1.56e-42 151
MS.gene025743.t1 MTR_1g032140 32.012 328 197 7 4 325 30 337 1.58e-42 151
MS.gene025743.t1 MTR_1g093120 30.205 341 214 9 4 336 29 353 1.86e-42 151
MS.gene025743.t1 MTR_3g083370 31.186 295 188 6 42 335 3 283 2.14e-42 150
MS.gene025743.t1 MTR_2g069020 30.588 340 217 10 4 338 31 356 2.26e-42 151
MS.gene025743.t1 MTR_1g093140 28.406 345 222 10 4 336 30 361 3.17e-42 151
MS.gene025743.t1 MTR_2g069020 30.588 340 217 10 4 338 31 356 3.65e-42 151
MS.gene025743.t1 MTR_8g009080 33.224 304 184 9 43 340 94 384 4.47e-42 151
MS.gene025743.t1 MTR_3g026150 31.136 273 171 7 4 273 24 282 5.26e-42 148
MS.gene025743.t1 MTR_3g043900 30.460 348 219 10 4 347 18 346 5.98e-42 150
MS.gene025743.t1 MTR_8g009170 30.000 340 219 8 4 340 28 351 8.26e-42 149
MS.gene025743.t1 MTR_2g068950 28.779 344 221 9 4 338 27 355 1.06e-41 149
MS.gene025743.t1 MTR_4g087120 31.707 328 195 11 39 345 22 341 1.12e-41 149
MS.gene025743.t1 MTR_1g093110 29.118 340 222 8 4 336 30 357 1.13e-41 149
MS.gene025743.t1 MTR_8g041620 30.000 330 207 9 4 325 33 346 2.63e-41 149
MS.gene025743.t1 MTR_5g055690 30.996 271 173 5 4 273 13 270 2.99e-41 145
MS.gene025743.t1 MTR_8g033380 30.484 351 201 8 12 343 30 356 3.68e-41 148
MS.gene025743.t1 MTR_2g102570 32.997 297 180 7 43 334 52 334 4.59e-41 148
MS.gene025743.t1 MTR_0009s0050 35.146 239 146 5 102 339 4 234 5.33e-41 144
MS.gene025743.t1 MTR_0009s0050 35.146 239 146 5 102 339 4 234 7.27e-41 144
MS.gene025743.t1 MTR_1g070080 29.180 305 194 5 10 309 9 296 8.79e-41 146
MS.gene025743.t1 MTR_2g068960 29.070 344 220 9 4 338 27 355 1.05e-40 147
MS.gene025743.t1 MTR_7g062560 28.863 343 215 10 4 343 27 343 1.30e-40 146
MS.gene025743.t1 MTR_1g062110 30.037 273 183 4 4 273 27 294 1.33e-40 145
MS.gene025743.t1 MTR_4g087140 29.846 325 200 11 43 349 26 340 2.63e-40 145
MS.gene025743.t1 MTR_4g115990 30.605 281 166 5 43 322 46 298 6.25e-40 144
MS.gene025743.t1 MTR_4g087130 33.945 327 188 11 39 345 22 340 2.06e-39 143
MS.gene025743.t1 MTR_2g069060 30.435 299 181 6 36 325 42 322 3.22e-39 142
MS.gene025743.t1 MTR_1g032250 30.618 356 206 10 4 346 37 364 6.37e-39 142
MS.gene025743.t1 MTR_7g102720 31.615 291 184 9 61 347 49 328 7.99e-39 141
MS.gene025743.t1 MTR_7g016090 28.529 333 218 9 2 332 5 319 8.70e-39 141
MS.gene025743.t1 MTR_7g016090 28.529 333 218 9 2 332 3 317 9.54e-39 140
MS.gene025743.t1 MTR_8g093930 27.933 358 229 7 2 351 13 349 1.87e-38 140
MS.gene025743.t1 MTR_0056s0160 35.885 209 129 3 118 325 1 205 2.38e-38 137
MS.gene025743.t1 MTR_2g069300 28.319 339 217 10 4 334 19 339 2.81e-38 140
MS.gene025743.t1 MTR_1g011580 28.060 335 215 8 7 334 22 337 3.05e-38 140
MS.gene025743.t1 MTR_1g032220 29.799 349 218 9 4 346 37 364 3.32e-38 140
MS.gene025743.t1 MTR_1g070135 27.899 276 180 7 1 273 1 260 3.88e-38 138
MS.gene025743.t1 MTR_6g015950 29.518 332 207 11 13 341 14 321 5.28e-38 139
MS.gene025743.t1 MTR_1g043810 28.783 337 221 9 4 336 20 341 6.72e-38 139
MS.gene025743.t1 MTR_8g041600 28.529 333 208 10 4 325 33 346 1.17e-37 139
MS.gene025743.t1 MTR_2g072910 30.909 275 175 6 4 276 17 278 1.55e-37 136
MS.gene025743.t1 MTR_0032s0040 32.530 332 200 9 4 325 28 345 2.73e-37 138
MS.gene025743.t1 MTR_5g005570 30.255 314 186 10 42 352 36 319 2.97e-37 137
MS.gene025743.t1 MTR_8g062600 28.824 340 223 8 4 338 33 358 3.93e-37 137
MS.gene025743.t1 MTR_1g048940 25.697 323 221 9 11 330 20 326 5.88e-37 136
MS.gene025743.t1 MTR_7g451860 32.222 270 171 6 42 309 40 299 1.74e-36 135
MS.gene025743.t1 MTR_7g047670 32.222 270 171 6 42 309 40 299 1.74e-36 135
MS.gene025743.t1 MTR_1g043760 28.783 337 215 9 4 334 20 337 1.90e-36 135
MS.gene025743.t1 MTR_1g043775 28.869 336 220 9 4 335 20 340 2.64e-36 135
MS.gene025743.t1 MTR_4g024660 27.566 341 226 8 4 338 33 358 1.33e-35 133
MS.gene025743.t1 MTR_1g043770 29.878 328 204 10 4 325 20 327 2.01e-35 132
MS.gene025743.t1 MTR_7g078010 30.000 340 216 8 4 335 33 358 3.19e-35 132
MS.gene025743.t1 MTR_2g068800 29.966 297 162 8 4 291 22 281 3.24e-35 130
MS.gene025743.t1 MTR_1g070185 29.446 343 212 10 4 340 34 352 3.33e-35 132
MS.gene025743.t1 MTR_8g063070 27.566 341 226 9 4 338 33 358 3.57e-35 132
MS.gene025743.t1 MTR_2g083030 29.560 318 197 9 28 338 18 315 4.77e-35 131
MS.gene025743.t1 MTR_7g016080 29.808 312 194 8 13 322 14 302 7.07e-35 130
MS.gene025743.t1 MTR_6g092620 30.496 282 172 9 43 317 3 267 7.27e-35 129
MS.gene025743.t1 MTR_7g056347 28.280 343 222 10 4 337 33 360 3.73e-33 127
MS.gene025743.t1 MTR_8g469400 28.324 346 204 10 4 338 33 345 5.95e-33 126
MS.gene025743.t1 MTR_1g070100 30.000 260 167 6 99 348 8 262 4.58e-32 121
MS.gene025743.t1 MTR_8g006930 29.326 341 216 10 4 336 33 356 4.70e-32 124
MS.gene025743.t1 MTR_1g070085 30.000 260 167 6 99 348 12 266 4.77e-32 121
MS.gene025743.t1 MTR_4g123020 27.632 304 185 8 43 333 20 301 1.53e-31 121
MS.gene025743.t1 MTR_2g083000 28.873 284 182 11 29 309 22 288 3.62e-31 120
MS.gene025743.t1 MTR_8g009080 33.906 233 139 7 43 272 94 314 8.78e-31 119
MS.gene025743.t1 MTR_2g019370 27.815 302 191 8 43 333 28 313 8.94e-31 119
MS.gene025743.t1 MTR_2g025120 30.303 231 148 4 44 273 5 223 1.07e-30 116
MS.gene025743.t1 MTR_8g093980 27.640 322 208 8 13 326 36 340 1.07e-30 120
MS.gene025743.t1 MTR_3g083370 30.901 233 148 4 42 273 3 223 1.88e-30 116
MS.gene025743.t1 MTR_8g009150 27.597 308 190 8 33 336 50 328 2.40e-30 118
MS.gene025743.t1 MTR_8g009080 33.043 230 139 6 43 269 94 311 2.59e-30 118
MS.gene025743.t1 MTR_4g074130 28.428 299 190 8 42 336 39 317 6.39e-30 117
MS.gene025743.t1 MTR_8g009120 28.803 309 193 8 33 336 50 336 1.04e-29 117
MS.gene025743.t1 MTR_0009s0050 41.429 140 78 3 201 339 16 152 1.74e-29 112
MS.gene025743.t1 MTR_2g069060 28.682 258 157 6 25 273 9 248 2.82e-29 113
MS.gene025743.t1 MTR_8g009170 29.259 270 175 6 4 272 28 282 2.98e-29 114
MS.gene025743.t1 MTR_7g056393 28.834 326 209 9 4 322 33 342 3.55e-29 116
MS.gene025743.t1 MTR_1g027290 28.060 335 213 9 12 334 1 319 7.71e-29 114
MS.gene025743.t1 MTR_3g040410 28.929 280 187 7 41 319 4 272 1.85e-28 112
MS.gene025743.t1 MTR_8g041600 28.000 275 177 9 4 273 33 291 2.14e-28 112
MS.gene025743.t1 MTR_2g070870 26.923 286 185 8 42 321 27 294 8.40e-28 111
MS.gene025743.t1 MTR_4g119410 27.729 339 224 9 4 336 33 356 8.45e-28 112
MS.gene025743.t1 MTR_1g086550 28.395 324 193 11 31 333 8 313 1.79e-27 110
MS.gene025743.t1 MTR_7g056353 28.517 263 174 5 81 338 79 332 3.43e-27 112
MS.gene025743.t1 MTR_1g043770 30.147 272 168 9 4 272 20 272 3.76e-27 108
MS.gene025743.t1 MTR_2g033270 27.907 301 197 6 40 333 11 298 5.69e-27 108
MS.gene025743.t1 MTR_8g461330 27.027 296 180 9 42 321 26 301 8.25e-27 108
MS.gene025743.t1 MTR_1g043810 27.509 269 181 6 4 272 20 274 1.01e-26 108
MS.gene025743.t1 MTR_0009s0400 43.590 117 64 2 210 325 1 116 1.40e-26 103
MS.gene025743.t1 MTR_4g100600 28.896 308 197 11 42 338 8 304 4.34e-26 106
MS.gene025743.t1 MTR_1g043775 27.509 269 181 6 4 272 20 274 1.10e-25 105
MS.gene025743.t1 MTR_8g009180 31.878 229 137 6 121 334 51 275 2.34e-25 103
MS.gene025743.t1 MTR_4g100590 28.383 303 199 9 45 338 6 299 2.89e-25 104
MS.gene025743.t1 MTR_1g027310 29.831 295 160 10 42 334 48 297 5.99e-25 103
MS.gene025743.t1 MTR_7g078010 28.148 270 180 6 4 273 33 288 9.70e-24 99.8
MS.gene025743.t1 MTR_4g132770 41.071 112 64 2 209 319 28 138 3.57e-23 94.7
MS.gene025743.t1 MTR_8g102600 26.959 319 208 10 38 338 3 314 2.43e-22 96.3
MS.gene025743.t1 MTR_4g096840 26.042 288 188 8 43 321 29 300 5.08e-21 92.8
MS.gene025743.t1 MTR_3g464530 27.465 284 160 11 43 309 34 288 2.61e-20 90.5
MS.gene025743.t1 MTR_8g030880 26.045 311 210 9 44 347 6 303 2.84e-20 90.5
MS.gene025743.t1 MTR_1g070110 28.390 236 129 7 88 319 1 200 4.85e-20 88.2
MS.gene025743.t1 MTR_6g088665 27.915 283 178 9 66 327 38 315 1.34e-19 89.0
MS.gene025743.t1 MTR_6g088665 27.562 283 178 9 66 327 38 314 1.73e-19 88.6
MS.gene025743.t1 MTR_0009s0410 29.747 158 100 3 4 161 12 158 1.83e-19 84.7
MS.gene025743.t1 MTR_4g021380 25.685 292 196 9 64 346 32 311 2.49e-19 87.8
MS.gene025743.t1 MTR_5g025090 25.773 291 192 8 43 330 5 274 5.88e-18 83.6
MS.gene025743.t1 MTR_7g077670 24.161 298 184 7 68 347 30 303 1.12e-17 83.2
MS.gene025743.t1 MTR_4g100590 28.400 250 162 8 98 338 11 252 2.38e-17 81.3
MS.gene025743.t1 MTR_5g027230 25.926 297 196 10 40 333 3 278 2.93e-17 81.6
MS.gene025743.t1 MTR_2g072930 28.846 156 100 4 4 158 17 162 3.84e-17 78.6
MS.gene025743.t1 MTR_3g108520 26.936 297 181 12 64 344 32 308 4.52e-17 81.3
MS.gene025743.t1 MTR_7g090520 26.774 310 201 13 43 343 10 302 3.07e-16 79.0
MS.gene025743.t1 MTR_4g011690 25.000 316 211 9 41 346 7 306 4.36e-16 78.2
MS.gene025743.t1 MTR_5g025050 24.915 293 198 8 43 333 5 277 5.64e-16 77.8
MS.gene025743.t1 MTR_4g011720 25.890 309 214 9 42 346 8 305 7.44e-16 77.8
MS.gene025743.t1 MTR_8g102600 25.279 269 178 8 88 338 1 264 2.98e-14 72.4
MS.gene025743.t1 MTR_1g043840 27.624 181 115 4 158 325 38 215 3.50e-14 73.2
MS.gene025743.t1 MTR_4g100600 28.774 212 136 8 42 247 8 210 1.84e-13 69.3
MS.gene025743.t1 MTR_4g021360 22.535 284 211 7 64 344 29 306 2.45e-13 70.5
MS.gene025743.t1 MTR_2g068850 27.451 153 101 3 4 156 22 164 3.65e-13 68.6
MS.gene025743.t1 MTR_1g032240 34.454 119 55 3 186 303 50 146 1.13e-12 66.2
MS.gene025743.t1 MTR_4g132765 26.866 201 135 3 42 242 3 191 8.71e-12 67.0
MS.gene025743.t1 MTR_4g094900 29.670 182 114 5 65 237 37 213 1.44e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025743.t1 AT4G22880 79.942 344 68 1 3 345 6 349 0.0 572
MS.gene025743.t1 AT4G22880 79.942 344 68 1 3 345 6 349 0.0 572
MS.gene025743.t1 AT4G22880 79.942 344 68 1 3 345 6 349 0.0 572
MS.gene025743.t1 AT5G08640 43.068 339 177 6 3 338 5 330 3.48e-92 279
MS.gene025743.t1 AT5G08640 43.068 339 177 6 3 338 5 330 3.48e-92 279
MS.gene025743.t1 AT3G11180 37.952 332 197 5 3 333 55 378 1.10e-76 241
MS.gene025743.t1 AT3G11180 37.952 332 197 5 3 333 55 378 1.58e-76 241
MS.gene025743.t1 AT5G05600 38.253 332 196 5 3 333 26 349 5.85e-76 239
MS.gene025743.t1 AT2G38240 37.048 332 195 6 4 333 12 331 1.43e-74 234
MS.gene025743.t1 AT5G63590 42.808 292 158 5 43 333 14 297 1.98e-71 225
MS.gene025743.t1 AT3G55970 37.202 336 199 6 3 333 13 341 6.77e-70 223
MS.gene025743.t1 AT4G16330 34.891 321 189 6 31 348 55 358 9.30e-70 223
MS.gene025743.t1 AT1G49390 38.870 301 175 6 43 341 45 338 2.20e-65 211
MS.gene025743.t1 AT4G22870 85.714 105 15 0 241 345 1 105 3.66e-63 197
MS.gene025743.t1 AT5G20400 39.789 284 164 5 43 325 45 322 7.86e-62 201
MS.gene025743.t1 AT1G17020 34.985 323 199 6 12 333 26 338 4.14e-61 200
MS.gene025743.t1 AT1G49390 39.015 264 155 4 79 341 1 259 8.31e-60 194
MS.gene025743.t1 AT5G43935 35.197 304 160 7 42 340 18 289 8.80e-60 194
MS.gene025743.t1 AT4G10500 33.746 323 194 9 4 321 6 313 2.61e-59 195
MS.gene025743.t1 AT5G54000 37.544 285 171 5 42 325 45 323 2.81e-59 195
MS.gene025743.t1 AT3G21420 34.405 311 195 5 42 349 54 358 1.66e-58 193
MS.gene025743.t1 AT5G63600 35.135 296 178 6 43 338 33 314 2.53e-58 192
MS.gene025743.t1 AT4G22870 84.848 99 15 0 247 345 48 146 2.54e-58 186
MS.gene025743.t1 AT5G20550 38.328 287 169 6 43 327 45 325 2.89e-58 192
MS.gene025743.t1 AT1G55290 33.718 347 209 10 4 347 26 354 3.76e-58 192
MS.gene025743.t1 AT5G63600 35.017 297 178 7 43 338 33 315 2.59e-57 189
MS.gene025743.t1 AT5G63595 38.722 266 134 7 44 309 26 262 2.67e-57 187
MS.gene025743.t1 AT3G13610 33.526 346 210 10 4 347 27 354 7.14e-57 189
MS.gene025743.t1 AT4G10490 33.531 337 199 11 7 334 6 326 1.75e-56 187
MS.gene025743.t1 AT4G16330 36.398 261 154 5 91 348 1 252 2.92e-56 184
MS.gene025743.t1 AT5G05600 35.294 272 168 4 3 273 26 290 1.11e-55 184
MS.gene025743.t1 AT1G78550 33.544 316 197 6 11 325 25 328 8.08e-55 184
MS.gene025743.t1 AT3G55970 36.232 276 165 5 3 273 13 282 1.02e-54 182
MS.gene025743.t1 AT5G54000 38.776 245 144 4 79 322 1 240 3.75e-54 179
MS.gene025743.t1 AT3G51240 33.036 336 206 9 9 340 9 329 1.44e-53 180
MS.gene025743.t1 AT1G17010 33.016 315 200 6 12 325 26 330 4.49e-53 179
MS.gene025743.t1 AT4G25300 32.000 325 209 6 12 335 25 338 1.04e-52 178
MS.gene025743.t1 AT4G25310 36.996 273 163 5 64 335 71 335 3.28e-52 177
MS.gene025743.t1 AT2G36690 31.250 336 218 7 4 336 21 346 1.15e-51 176
MS.gene025743.t1 AT2G36690 31.250 336 218 7 4 336 21 346 1.15e-51 176
MS.gene025743.t1 AT5G24530 32.000 325 200 9 13 333 13 320 1.07e-49 170
MS.gene025743.t1 AT2G44800 31.627 332 214 8 6 336 18 337 7.54e-49 168
MS.gene025743.t1 AT5G07200 35.220 318 173 8 15 318 37 335 9.53e-49 168
MS.gene025743.t1 AT1G03410 32.515 326 205 8 4 325 20 334 1.95e-47 164
MS.gene025743.t1 AT3G60290 30.702 342 223 9 7 347 19 347 3.11e-47 164
MS.gene025743.t1 AT1G78550 35.060 251 156 4 76 325 6 250 5.16e-47 161
MS.gene025743.t1 AT1G03410 32.515 326 205 8 4 325 57 371 6.09e-47 164
MS.gene025743.t1 AT5G07480 34.237 295 179 9 43 330 44 330 2.03e-46 161
MS.gene025743.t1 AT3G19000 34.810 316 179 10 21 322 15 317 5.08e-46 160
MS.gene025743.t1 AT4G25420 32.267 344 200 9 13 342 38 362 1.27e-45 160
MS.gene025743.t1 AT5G63580 41.126 231 127 5 43 273 19 240 8.77e-45 154
MS.gene025743.t1 AT1G60980 32.059 340 203 8 15 342 36 359 1.06e-44 157
MS.gene025743.t1 AT5G63580 41.485 229 125 5 43 271 19 238 1.38e-44 154
MS.gene025743.t1 AT1G15550 30.746 335 209 12 9 337 24 341 3.32e-44 155
MS.gene025743.t1 AT1G77330 33.663 303 171 11 43 334 3 286 9.26e-44 153
MS.gene025743.t1 AT1G06640 32.530 332 198 10 4 325 26 341 1.01e-43 155
MS.gene025743.t1 AT1G06620 31.672 341 214 8 4 341 27 351 1.85e-43 154
MS.gene025743.t1 AT3G12900 30.636 346 220 10 4 347 22 349 3.01e-43 153
MS.gene025743.t1 AT5G51810 31.977 344 197 10 13 342 40 360 3.33e-43 154
MS.gene025743.t1 AT3G19010 32.203 295 183 6 42 325 27 315 7.10e-43 152
MS.gene025743.t1 AT3G19010 32.203 295 183 6 42 325 27 315 7.10e-43 152
MS.gene025743.t1 AT1G06650 31.498 327 208 8 4 325 26 341 2.69e-42 151
MS.gene025743.t1 AT2G30840 30.588 340 222 9 4 340 21 349 1.01e-41 149
MS.gene025743.t1 AT1G05010 32.971 276 170 6 44 317 5 267 1.63e-41 148
MS.gene025743.t1 AT5G59530 29.882 338 212 8 4 333 24 344 4.65e-41 147
MS.gene025743.t1 AT5G43440 32.517 286 180 7 43 325 62 337 4.70e-41 147
MS.gene025743.t1 AT1G80330 30.744 309 192 7 42 341 48 343 5.25e-41 147
MS.gene025743.t1 AT1G12010 30.272 294 189 6 42 334 6 284 6.33e-41 146
MS.gene025743.t1 AT1G80340 31.611 329 200 9 14 337 26 334 6.42e-41 147
MS.gene025743.t1 AT1G03400 30.000 330 198 9 4 325 20 324 9.59e-41 146
MS.gene025743.t1 AT3G51240 34.783 253 154 6 91 340 1 245 1.62e-40 144
MS.gene025743.t1 AT1G44090 31.818 330 196 9 14 332 42 353 5.39e-40 145
MS.gene025743.t1 AT5G43450 30.330 333 215 8 4 333 24 342 7.69e-40 144
MS.gene025743.t1 AT1G06645 30.091 329 207 7 4 325 39 351 2.09e-39 144
MS.gene025743.t1 AT3G19000 32.727 275 159 9 21 281 15 277 3.40e-39 140
MS.gene025743.t1 AT3G61400 30.372 349 206 10 1 332 22 350 3.58e-39 143
MS.gene025743.t1 AT1G62380 30.612 294 188 8 42 334 6 284 4.07e-39 141
MS.gene025743.t1 AT2G30830 27.647 340 228 7 4 340 21 345 4.71e-39 142
MS.gene025743.t1 AT5G59540 29.697 330 208 9 4 325 25 338 5.85e-39 142
MS.gene025743.t1 AT4G21690 29.712 313 190 8 3 306 17 308 2.37e-38 140
MS.gene025743.t1 AT1G04350 28.571 329 210 8 4 325 22 332 6.27e-38 139
MS.gene025743.t1 AT1G04380 31.488 289 176 9 43 325 45 317 1.11e-37 138
MS.gene025743.t1 AT2G30840 30.294 340 217 10 4 340 21 343 1.63e-37 138
MS.gene025743.t1 AT4G21200 30.640 297 184 9 42 335 41 318 1.23e-36 135
MS.gene025743.t1 AT5G12270 28.895 353 220 10 2 346 23 352 1.86e-36 135
MS.gene025743.t1 AT4G25310 32.601 273 147 5 64 335 71 307 3.29e-36 134
MS.gene025743.t1 AT2G19590 30.249 281 173 8 42 317 10 272 1.10e-35 132
MS.gene025743.t1 AT1G03400 27.654 358 198 10 4 325 20 352 4.82e-35 132
MS.gene025743.t1 AT1G06620 32.593 270 167 6 4 272 27 282 2.25e-34 128
MS.gene025743.t1 AT1G06640 31.915 282 171 7 4 279 26 292 5.09e-34 128
MS.gene025743.t1 AT1G06640 32.246 276 166 7 4 273 26 286 7.95e-34 126
MS.gene025743.t1 AT2G25450 28.696 345 221 11 4 341 21 347 1.66e-33 127
MS.gene025743.t1 AT3G19010 29.153 295 162 6 42 325 27 285 4.46e-33 125
MS.gene025743.t1 AT1G06650 30.996 271 176 5 4 273 26 286 6.09e-33 125
MS.gene025743.t1 AT3G19010 30.040 253 161 5 42 283 27 274 5.10e-32 122
MS.gene025743.t1 AT2G34555 29.766 299 184 9 43 333 27 307 1.73e-31 121
MS.gene025743.t1 AT1G30040 27.946 297 193 7 43 333 31 312 2.61e-31 121
MS.gene025743.t1 AT4G25420 30.769 273 159 7 13 273 38 292 5.05e-31 119
MS.gene025743.t1 AT5G43440 32.900 231 144 6 43 272 62 282 9.75e-31 118
MS.gene025743.t1 AT5G07480 35.023 217 128 7 121 330 11 221 2.13e-30 116
MS.gene025743.t1 AT3G61400 30.314 287 166 8 1 273 22 288 2.97e-30 117
MS.gene025743.t1 AT2G19590 30.864 243 148 7 80 317 30 257 1.52e-29 115
MS.gene025743.t1 AT5G43450 30.741 270 172 7 4 272 24 279 1.64e-29 115
MS.gene025743.t1 AT2G30840 30.000 270 177 7 4 272 21 279 1.91e-29 115
MS.gene025743.t1 AT5G51810 30.515 272 163 7 13 276 40 293 2.90e-29 114
MS.gene025743.t1 AT3G49620 32.414 290 176 11 65 339 63 347 4.42e-29 115
MS.gene025743.t1 AT5G59540 28.364 275 177 7 4 273 25 284 3.74e-28 111
MS.gene025743.t1 AT3G49630 29.467 319 196 11 43 338 9 321 9.92e-28 111
MS.gene025743.t1 AT1G04380 31.224 237 143 8 43 275 45 265 1.18e-27 109
MS.gene025743.t1 AT3G49630 31.034 290 178 10 65 338 34 317 1.42e-27 110
MS.gene025743.t1 AT1G78440 26.073 303 194 9 43 333 18 302 1.46e-27 110
MS.gene025743.t1 AT1G50960 27.857 280 189 6 24 303 25 291 2.50e-26 107
MS.gene025743.t1 AT1G02400 29.861 288 177 11 59 333 34 309 5.41e-26 106
MS.gene025743.t1 AT4G25300 33.155 187 120 4 161 346 72 254 8.63e-26 104
MS.gene025743.t1 AT3G50210 27.607 326 199 13 43 338 8 326 8.93e-26 105
MS.gene025743.t1 AT3G50210 27.607 326 199 13 43 338 8 326 8.93e-26 105
MS.gene025743.t1 AT3G50210 27.607 326 199 13 43 338 8 326 8.93e-26 105
MS.gene025743.t1 AT3G46500 27.687 307 199 9 36 326 2 301 8.91e-23 97.4
MS.gene025743.t1 AT1G14130 28.866 291 185 8 40 327 6 277 2.87e-22 95.9
MS.gene025743.t1 AT1G47990 25.347 288 182 9 43 317 15 282 2.00e-21 93.6
MS.gene025743.t1 AT3G47190 26.786 280 169 9 43 306 32 291 4.75e-20 90.1
MS.gene025743.t1 AT4G23340 28.475 295 173 11 69 347 30 302 5.84e-20 89.7
MS.gene025743.t1 AT1G30040 26.027 219 151 5 61 273 40 253 9.80e-19 85.1
MS.gene025743.t1 AT1G14120 26.433 314 181 10 43 335 8 292 1.81e-18 85.1
MS.gene025743.t1 AT1G14120 26.433 314 181 10 43 335 8 292 1.81e-18 85.1
MS.gene025743.t1 AT1G14120 26.433 314 181 10 43 335 8 292 1.81e-18 85.1
MS.gene025743.t1 AT3G46500 26.573 286 188 8 36 305 2 281 6.99e-18 83.2
MS.gene025743.t1 AT3G49630 32.292 192 118 7 154 338 62 248 8.33e-18 82.4
MS.gene025743.t1 AT3G50210 30.964 197 120 7 154 338 52 244 4.60e-17 80.1
MS.gene025743.t1 AT4G03070 27.097 310 190 11 42 335 13 302 7.80e-16 77.8
MS.gene025743.t1 AT4G23340 31.551 187 117 7 167 347 3 184 9.88e-16 75.5
MS.gene025743.t1 AT1G80320 26.000 300 186 9 43 327 9 287 1.34e-15 77.0
MS.gene025743.t1 AT1G35190 26.403 303 191 9 45 327 14 304 1.81e-15 76.6
MS.gene025743.t1 AT3G46490 25.773 291 192 9 66 337 34 319 6.29e-15 75.1
MS.gene025743.t1 AT1G52820 25.725 276 177 7 62 327 32 289 2.95e-14 73.2
MS.gene025743.t1 AT1G02400 27.391 230 144 9 59 276 34 252 8.58e-14 71.2
MS.gene025743.t1 AT3G46500 27.232 224 145 7 117 326 8 227 7.38e-13 68.2
MS.gene025743.t1 AT3G46500 27.232 224 145 7 117 326 8 227 7.38e-13 68.2
MS.gene025743.t1 AT4G16765 26.882 186 124 5 161 338 59 240 8.17e-13 67.8
MS.gene025743.t1 AT4G16765 26.882 186 124 5 161 338 59 240 8.17e-13 67.8
MS.gene025743.t1 AT4G16765 26.882 186 124 5 161 338 59 240 8.17e-13 67.8
MS.gene025743.t1 AT5G51310 23.741 278 180 9 66 324 22 286 2.62e-12 67.4
MS.gene025743.t1 AT3G46490 25.098 255 168 8 66 300 34 285 4.07e-12 66.6
MS.gene025743.t1 AT4G03050 37.273 110 66 3 223 330 274 382 9.36e-12 66.2
MS.gene025743.t1 AT4G03050 37.273 110 66 3 223 330 274 382 9.36e-12 66.2

Find 60 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTCTCACATATTCTTT+TGG 0.172725 5.3:-4841593 None:intergenic
AGCTCTGGCTGAGGGCAAAT+TGG 0.266598 5.3:-4843173 None:intergenic
ATGTTTGTTAACTCTTCTTT+TGG 0.313451 5.3:-4841611 None:intergenic
TATGCAAATGATCAAAGTTC+AGG 0.328389 5.3:+4841872 MS.gene025743:CDS
TCATCGTGGATTGGTGAATA+AGG 0.330905 5.3:+4843382 MS.gene025743:CDS
GCAAACCTGGGACCATATTA+TGG 0.336556 5.3:-4843247 None:intergenic
GATTCAATTCTCATGCATAT+TGG 0.346090 5.3:+4843314 MS.gene025743:CDS
TCAGGGAAGATTCAAGGTTA+TGG 0.360224 5.3:+4841890 MS.gene025743:CDS
ATAAACGTGATTTGTCTATA+TGG 0.368270 5.3:+4841987 MS.gene025743:CDS
TCTTCAGATGAAATAGTTAG+AGG 0.369970 5.3:+4841704 MS.gene025743:CDS
TAAGTGAACTTACATCTGTA+TGG 0.386015 5.3:-4843214 None:intergenic
TACATTCCTCCTCCATAATA+TGG 0.386987 5.3:+4843235 MS.gene025743:CDS
AGTCCTAGCTAGCAAGATAA+TGG 0.387543 5.3:+4843052 MS.gene025743:CDS
GTGCGAGGTGGAAACCTTGC+TGG 0.390975 5.3:-4843497 None:intergenic
TAAGAAAGCTGCAGAGGAAT+GGG 0.406966 5.3:+4841745 MS.gene025743:CDS
ATGCTAGTGGTCAACTTGAA+TGG 0.413046 5.3:+4841930 MS.gene025743:CDS
CTTCCATTATCTTGCTAGCT+AGG 0.422131 5.3:-4843055 None:intergenic
GTATAATCAGCAGGTGTCTT+AGG 0.424548 5.3:-4842010 None:intergenic
GTTATCTCTTGAACTAGGAT+TGG 0.435827 5.3:+4843079 MS.gene025743:CDS
GCTCTGGCTGAGGGCAAATT+GGG 0.441246 5.3:-4843172 None:intergenic
TGCTAGTGGTCAACTTGAAT+GGG 0.464985 5.3:+4841931 MS.gene025743:CDS
ATTGATCGTTTGAAGAAAGC+TGG 0.467515 5.3:+4841809 MS.gene025743:CDS
AGGTCTATTGTTGGAACTTG+AGG 0.468565 5.3:-4841668 None:intergenic
CAAAGTTCAGGGAAGATTCA+AGG 0.478666 5.3:+4841884 MS.gene025743:CDS
GACAAATCACGTTTATCCTC+TGG 0.481341 5.3:-4841980 None:intergenic
CTCCTCCATAATATGGTCCC+AGG 0.491984 5.3:+4843242 MS.gene025743:CDS
TCATAGAAAAGTTGCAAACC+TGG 0.502750 5.3:-4843260 None:intergenic
AAACATAGGTAACATCTTTG+AGG 0.506272 5.3:+4841628 MS.gene025743:CDS
ATGCAAATGATCAAAGTTCA+GGG 0.522708 5.3:+4841873 MS.gene025743:CDS
TCAACTCCAAGTGCTAGCTC+TGG 0.523457 5.3:-4843188 None:intergenic
ATATGCATGAGAATTGAATC+AGG 0.524018 5.3:-4843311 None:intergenic
TTAAGAAAGCTGCAGAGGAA+TGG 0.526405 5.3:+4841744 MS.gene025743:CDS
TCACTTACAAGTTCAGGAAG+TGG 0.529612 5.3:-4843467 None:intergenic
TCTCTTGAACTAGGATTGGA+AGG 0.540412 5.3:+4843083 MS.gene025743:CDS
CCAAGTGCTAGCTCTGGCTG+AGG 0.541831 5.3:-4843182 None:intergenic
GAAGTGTTATCTCTTGAACT+AGG 0.543050 5.3:+4843074 MS.gene025743:CDS
TATTCACCAATCCACGATGA+AGG 0.544265 5.3:-4843379 None:intergenic
ATTACTAACGTATAATCAGC+AGG 0.548828 5.3:-4842019 None:intergenic
AACTAGGATTGGAAGGAGGA+AGG 0.567524 5.3:+4843090 MS.gene025743:CDS
CCTCAGCCAGAGCTAGCACT+TGG 0.570476 5.3:+4843182 MS.gene025743:CDS
AAAGAAGAGTTAACAAACAT+AGG 0.572842 5.3:+4841614 MS.gene025743:CDS
CTGGGACCATATTATGGAGG+AGG 0.581004 5.3:-4843241 None:intergenic
AAGTATCCTTCATCGTGGAT+TGG 0.581851 5.3:+4843373 MS.gene025743:CDS
AAGTGAACTTACATCTGTAT+GGG 0.583824 5.3:-4843213 None:intergenic
CATAGAAAAGTTGCAAACCT+GGG 0.593454 5.3:-4843259 None:intergenic
GTTGAAAGCTTAGCCTTGAG+TGG 0.594566 5.3:+4841557 MS.gene025743:CDS
GAAGCTTAAGAAAGCTGCAG+AGG 0.604993 5.3:+4841739 MS.gene025743:CDS
GATTGATGCTATACCACTCA+AGG 0.616412 5.3:-4841570 None:intergenic
ACAATTGAGATACTTAGCAA+TGG 0.617144 5.3:+4843341 MS.gene025743:CDS
CAAGTGCTAGCTCTGGCTGA+GGG 0.640524 5.3:-4843181 None:intergenic
AAATTAGCTAACAATGCTAG+TGG 0.642740 5.3:+4841917 MS.gene025743:CDS
GGTTACAAGTGAATATGCAA+AGG 0.645291 5.3:+4843022 MS.gene025743:CDS
TGCTGAGCAAAAGTGCGAGG+TGG 0.649651 5.3:-4843509 None:intergenic
TAAGATCATCAGATATACCA+TGG 0.652279 5.3:-4841787 None:intergenic
AAGAAAGCTGCAGAGGAATG+GGG 0.653446 5.3:+4841746 MS.gene025743:CDS
TACAAAAGTATCCTTCATCG+TGG 0.668677 5.3:+4843368 MS.gene025743:CDS
CTTGAACTAGGATTGGAAGG+AGG 0.674989 5.3:+4843086 MS.gene025743:CDS
AACCTGGGACCATATTATGG+AGG 0.688079 5.3:-4843244 None:intergenic
GTGATGCATCTAGTGAACCA+TGG 0.722158 5.3:+4841770 MS.gene025743:CDS
ATATGCTGAGCAAAAGTGCG+AGG 0.769261 5.3:-4843512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAAATAATGAAA+TGG - chr5.3:4842769-4842788 None:intergenic 10.0%
!! AAATTTATTGATATTACAAT+TGG + chr5.3:4842917-4842936 MS.gene025743:intron 10.0%
!! TACCAAATTATAAATAAATA+AGG - chr5.3:4842234-4842253 None:intergenic 10.0%
!!! TTCCTTATTTATTTATAATT+TGG + chr5.3:4842229-4842248 MS.gene025743:intron 10.0%
!! AAAACATGCAAAAAATAATA+AGG - chr5.3:4842967-4842986 None:intergenic 15.0%
!! TTAAATTGATAAGAGAAAAA+AGG - chr5.3:4842627-4842646 None:intergenic 15.0%
!!! ACAAAAAACTTATTTTTACA+TGG - chr5.3:4842819-4842838 None:intergenic 15.0%
!!! TTCTATTTTAATATTGAGTT+TGG + chr5.3:4842501-4842520 MS.gene025743:intron 15.0%
!!! TTCTTTTATTAGATTCTAAA+GGG + chr5.3:4842582-4842601 MS.gene025743:intron 15.0%
!!! TTTCTTTTATTAGATTCTAA+AGG + chr5.3:4842581-4842600 MS.gene025743:intron 15.0%
!! AAAAAAACCAAAGAATGAAT+TGG - chr5.3:4842079-4842098 None:intergenic 20.0%
!! CAAAAAATGGAATATTTAGA+AGG - chr5.3:4842863-4842882 None:intergenic 20.0%
!! CACAAAGAAGAAAAATATAA+GGG + chr5.3:4842383-4842402 MS.gene025743:intron 20.0%
!! TCACAAAGAAGAAAAATATA+AGG + chr5.3:4842382-4842401 MS.gene025743:intron 20.0%
!!! ACAATTATGATTTTTGACTT+GGG - chr5.3:4842162-4842181 None:intergenic 20.0%
!!! ATATTCATCACAAACTTTTT+AGG + chr5.3:4843531-4843550 MS.gene025743:CDS 20.0%
!!! TAATTTTCCAATTCATTCTT+TGG + chr5.3:4842069-4842088 MS.gene025743:intron 20.0%
!!! TACAATTATGATTTTTGACT+TGG - chr5.3:4842163-4842182 None:intergenic 20.0%
! AAAGAAGAGTTAACAAACAT+AGG + chr5.3:4841614-4841633 MS.gene025743:CDS 25.0%
! AGGAAAAAGTTAGAATATCT+TGG + chr5.3:4843402-4843421 MS.gene025743:CDS 25.0%
! ATTGATAAGAGAAAAAAGGT+TGG - chr5.3:4842623-4842642 None:intergenic 25.0%
! GGAAAAAGTTAGAATATCTT+GGG + chr5.3:4843403-4843422 MS.gene025743:CDS 25.0%
! TAATGGTCAAACACAAAAAA+TGG - chr5.3:4842876-4842895 None:intergenic 25.0%
! TCAAGTCAAAAAGTTACTAA+TGG + chr5.3:4842475-4842494 MS.gene025743:intron 25.0%
! TTTGAGGAAGAAAAAAAAGA+AGG + chr5.3:4841644-4841663 MS.gene025743:CDS 25.0%
!! AATCGTAAAATTGCGATTTT+TGG - chr5.3:4842134-4842153 None:intergenic 25.0%
!! ATAAACGTGATTTGTCTATA+TGG + chr5.3:4841987-4842006 MS.gene025743:CDS 25.0%
!! ATCGTAAAATTGCGATTTTT+GGG - chr5.3:4842133-4842152 None:intergenic 25.0%
!! TATTTCTCTTTTTCTTCAAC+AGG - chr5.3:4841854-4841873 None:intergenic 25.0%
!! TTCAGAATAATTTTCTCCTT+AGG - chr5.3:4843446-4843465 None:intergenic 25.0%
!! TTTTAATATTGAGTTTGGCT+TGG + chr5.3:4842506-4842525 MS.gene025743:intron 25.0%
!! TTTTATGAAAGCTATGCAAA+AGG - chr5.3:4842900-4842919 None:intergenic 25.0%
!! TTTTCTTCTTTGTGATGATT+TGG - chr5.3:4842377-4842396 None:intergenic 25.0%
!!! AATGTCATTTGTGTTTTACT+TGG - chr5.3:4842729-4842748 None:intergenic 25.0%
!!! ATACATGTGTTTTTGAAATC+TGG - chr5.3:4842668-4842687 None:intergenic 25.0%
!!! ATGTTTGTTAACTCTTCTTT+TGG - chr5.3:4841614-4841633 None:intergenic 25.0%
!!! ATTTCTTTTAGGTCTATTGT+TGG - chr5.3:4841680-4841699 None:intergenic 25.0%
!!! CTGAAGAGTTTATTTCTTTT+AGG - chr5.3:4841691-4841710 None:intergenic 25.0%
!!! TACATGTGTTTTTGAAATCT+GGG - chr5.3:4842667-4842686 None:intergenic 25.0%
AAACATAGGTAACATCTTTG+AGG + chr5.3:4841628-4841647 MS.gene025743:CDS 30.0%
AAACCACTCAAAAAAAGATG+AGG - chr5.3:4842196-4842215 None:intergenic 30.0%
AAATTAGCTAACAATGCTAG+TGG + chr5.3:4841917-4841936 MS.gene025743:CDS 30.0%
AACCACTCAAAAAAAGATGA+GGG - chr5.3:4842195-4842214 None:intergenic 30.0%
AAGTGAACTTACATCTGTAT+GGG - chr5.3:4843216-4843235 None:intergenic 30.0%
ACAATTGAGATACTTAGCAA+TGG + chr5.3:4843341-4843360 MS.gene025743:CDS 30.0%
ATATGCATGAGAATTGAATC+AGG - chr5.3:4843314-4843333 None:intergenic 30.0%
ATGCAAATGATCAAAGTTCA+GGG + chr5.3:4841873-4841892 MS.gene025743:CDS 30.0%
ATTACTAACGTATAATCAGC+AGG - chr5.3:4842022-4842041 None:intergenic 30.0%
GATTCAATTCTCATGCATAT+TGG + chr5.3:4843314-4843333 MS.gene025743:CDS 30.0%
TAAGATCATCAGATATACCA+TGG - chr5.3:4841790-4841809 None:intergenic 30.0%
TAAGTGAACTTACATCTGTA+TGG - chr5.3:4843217-4843236 None:intergenic 30.0%
TATGCAAATGATCAAAGTTC+AGG + chr5.3:4841872-4841891 MS.gene025743:CDS 30.0%
TCTTCAGATGAAATAGTTAG+AGG + chr5.3:4841704-4841723 MS.gene025743:CDS 30.0%
! AGAATAATTTTCTCCTTAGG+TGG - chr5.3:4843443-4843462 None:intergenic 30.0%
! TTGGTCTCACATATTCTTTT+GGG - chr5.3:4841595-4841614 None:intergenic 30.0%
! TTTGGTCTCACATATTCTTT+TGG - chr5.3:4841596-4841615 None:intergenic 30.0%
!! TCATCACAAACTTTTTAGGA+AGG + chr5.3:4843535-4843554 MS.gene025743:CDS 30.0%
!! TCTTTTTCACTTACAAGTTC+AGG - chr5.3:4843476-4843495 None:intergenic 30.0%
AAAGCTATGCAAAAGGCTAA+TGG - chr5.3:4842893-4842912 None:intergenic 35.0%
ATTGATCGTTTGAAGAAAGC+TGG + chr5.3:4841809-4841828 MS.gene025743:CDS 35.0%
CAATATATGACGCTACATGA+AGG + chr5.3:4842331-4842350 MS.gene025743:intron 35.0%
CATAGAAAAGTTGCAAACCT+GGG - chr5.3:4843262-4843281 None:intergenic 35.0%
GGTTACAAGTGAATATGCAA+AGG + chr5.3:4843022-4843041 MS.gene025743:CDS 35.0%
GTTATCTCTTGAACTAGGAT+TGG + chr5.3:4843079-4843098 MS.gene025743:CDS 35.0%
TAAGTGAAAAAGAACCAGCA+AGG + chr5.3:4843483-4843502 MS.gene025743:CDS 35.0%
TACATTCCTCCTCCATAATA+TGG + chr5.3:4843235-4843254 MS.gene025743:CDS 35.0%
TCATAGAAAAGTTGCAAACC+TGG - chr5.3:4843263-4843282 None:intergenic 35.0%
TTATTGACATAGTACCCAGT+TGG + chr5.3:4842296-4842315 MS.gene025743:intron 35.0%
! AACTTTTCTATGAGGGCAAA+TGG + chr5.3:4843270-4843289 MS.gene025743:CDS 35.0%
! ACTTTTCTATGAGGGCAAAT+GGG + chr5.3:4843271-4843290 MS.gene025743:CDS 35.0%
! AGGTTTGCAACTTTTCTATG+AGG + chr5.3:4843262-4843281 MS.gene025743:CDS 35.0%
! CTTTCATTGCATTTTTCCAG+AGG + chr5.3:4841964-4841983 MS.gene025743:CDS 35.0%
! GAAGTGTTATCTCTTGAACT+AGG + chr5.3:4843074-4843093 MS.gene025743:CDS 35.0%
! GGTTTGCAACTTTTCTATGA+GGG + chr5.3:4843263-4843282 MS.gene025743:CDS 35.0%
!! CAAACTTTTTAGGAAGGATG+AGG + chr5.3:4843541-4843560 MS.gene025743:CDS 35.0%
!! TACAAAAGTATCCTTCATCG+TGG + chr5.3:4843368-4843387 MS.gene025743:CDS 35.0%
AAGTATCCTTCATCGTGGAT+TGG + chr5.3:4843373-4843392 MS.gene025743:CDS 40.0%
AGAAAAAGAAGCTGGTGGAA+TGG + chr5.3:4843115-4843134 MS.gene025743:CDS 40.0%
AGGTCTATTGTTGGAACTTG+AGG - chr5.3:4841671-4841690 None:intergenic 40.0%
AGGTTAGAAAAAGAAGCTGG+TGG + chr5.3:4843110-4843129 MS.gene025743:CDS 40.0%
AGTCCTAGCTAGCAAGATAA+TGG + chr5.3:4843052-4843071 MS.gene025743:CDS 40.0%
ATGCTAGTGGTCAACTTGAA+TGG + chr5.3:4841930-4841949 MS.gene025743:CDS 40.0%
CAAAGTTCAGGGAAGATTCA+AGG + chr5.3:4841884-4841903 MS.gene025743:CDS 40.0%
CTTCCATTATCTTGCTAGCT+AGG - chr5.3:4843058-4843077 None:intergenic 40.0%
GACAAATCACGTTTATCCTC+TGG - chr5.3:4841983-4842002 None:intergenic 40.0%
GATTGATGCTATACCACTCA+AGG - chr5.3:4841573-4841592 None:intergenic 40.0%
GGAAGGTTAGAAAAAGAAGC+TGG + chr5.3:4843107-4843126 MS.gene025743:CDS 40.0%
GTATAATCAGCAGGTGTCTT+AGG - chr5.3:4842013-4842032 None:intergenic 40.0%
TAAGAAAGCTGCAGAGGAAT+GGG + chr5.3:4841745-4841764 MS.gene025743:CDS 40.0%
TATTCACCAATCCACGATGA+AGG - chr5.3:4843382-4843401 None:intergenic 40.0%
TCACTTACAAGTTCAGGAAG+TGG - chr5.3:4843470-4843489 None:intergenic 40.0%
TCAGGGAAGATTCAAGGTTA+TGG + chr5.3:4841890-4841909 MS.gene025743:CDS 40.0%
TCTCTTGAACTAGGATTGGA+AGG + chr5.3:4843083-4843102 MS.gene025743:CDS 40.0%
TGCTAGTGGTCAACTTGAAT+GGG + chr5.3:4841931-4841950 MS.gene025743:CDS 40.0%
TTAAGAAAGCTGCAGAGGAA+TGG + chr5.3:4841744-4841763 MS.gene025743:CDS 40.0%
! AGTGTTTTGTGAACCACCTA+AGG + chr5.3:4843427-4843446 MS.gene025743:CDS 40.0%
!! ACTTTTTAGGAAGGATGAGG+AGG + chr5.3:4843544-4843563 MS.gene025743:CDS 40.0%
!! TCATCGTGGATTGGTGAATA+AGG + chr5.3:4843382-4843401 MS.gene025743:CDS 40.0%
!!! GACCCTCATCTTTTTTTGAG+TGG + chr5.3:4842190-4842209 MS.gene025743:intron 40.0%
AACCTGGGACCATATTATGG+AGG - chr5.3:4843247-4843266 None:intergenic 45.0%
AACTAGGATTGGAAGGAGGA+AGG + chr5.3:4843090-4843109 MS.gene025743:CDS 45.0%
AAGAAAGCTGCAGAGGAATG+GGG + chr5.3:4841746-4841765 MS.gene025743:CDS 45.0%
CGTCATATATTGACCGACAC+TGG - chr5.3:4842323-4842342 None:intergenic 45.0%
CTTGAACTAGGATTGGAAGG+AGG + chr5.3:4843086-4843105 MS.gene025743:CDS 45.0%
GAAGCTTAAGAAAGCTGCAG+AGG + chr5.3:4841739-4841758 MS.gene025743:CDS 45.0%
GCAAACCTGGGACCATATTA+TGG - chr5.3:4843250-4843269 None:intergenic 45.0%
GTGATGCATCTAGTGAACCA+TGG + chr5.3:4841770-4841789 MS.gene025743:CDS 45.0%
! ATATGCTGAGCAAAAGTGCG+AGG - chr5.3:4843515-4843534 None:intergenic 45.0%
! TTTGGTGTATGCATGCAGTG+AGG + chr5.3:4843001-4843020 MS.gene025743:intron 45.0%
!! GTTGAAAGCTTAGCCTTGAG+TGG + chr5.3:4841557-4841576 MS.gene025743:CDS 45.0%
!!! TTTTATCAAAATAATTTTTT+TGG + chr5.3:4842983-4843002 MS.gene025743:intron 5.0%
CTCCTCCATAATATGGTCCC+AGG + chr5.3:4843242-4843261 MS.gene025743:CDS 50.0%
CTGGGACCATATTATGGAGG+AGG - chr5.3:4843244-4843263 None:intergenic 50.0%
TCAACTCCAAGTGCTAGCTC+TGG - chr5.3:4843191-4843210 None:intergenic 50.0%
GCTCTGGCTGAGGGCAAATT+GGG - chr5.3:4843175-4843194 None:intergenic 55.0%
GTACCCAGTTGGACCAGTGT+CGG + chr5.3:4842307-4842326 MS.gene025743:intron 55.0%
TGACCGACACTGGTCCAACT+GGG - chr5.3:4842313-4842332 None:intergenic 55.0%
TTGACCGACACTGGTCCAAC+TGG - chr5.3:4842314-4842333 None:intergenic 55.0%
! AGCTCTGGCTGAGGGCAAAT+TGG - chr5.3:4843176-4843195 None:intergenic 55.0%
! TGCTGAGCAAAAGTGCGAGG+TGG - chr5.3:4843512-4843531 None:intergenic 55.0%
!! CAAGTGCTAGCTCTGGCTGA+GGG - chr5.3:4843184-4843203 None:intergenic 55.0%
CCTCAGCCAGAGCTAGCACT+TGG + chr5.3:4843182-4843201 MS.gene025743:CDS 60.0%
GTGCGAGGTGGAAACCTTGC+TGG - chr5.3:4843500-4843519 None:intergenic 60.0%
!! CCAAGTGCTAGCTCTGGCTG+AGG - chr5.3:4843185-4843204 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 4841548 4843592 4841548 ID=MS.gene025743
chr5.3 mRNA 4841548 4843592 4841548 ID=MS.gene025743.t1;Parent=MS.gene025743
chr5.3 exon 4841548 4842032 4841548 ID=MS.gene025743.t1.exon1;Parent=MS.gene025743.t1
chr5.3 CDS 4841548 4842032 4841548 ID=cds.MS.gene025743.t1;Parent=MS.gene025743.t1
chr5.3 exon 4843019 4843592 4843019 ID=MS.gene025743.t1.exon2;Parent=MS.gene025743.t1
chr5.3 CDS 4843019 4843592 4843019 ID=cds.MS.gene025743.t1;Parent=MS.gene025743.t1
Gene Sequence

>MS.gene025743

ATGGGAAGAGTTGAAAGCTTAGCCTTGAGTGGTATAGCATCAATCCCAAAAGAATATGTGAGACCAAAAGAAGAGTTAACAAACATAGGTAACATCTTTGAGGAAGAAAAAAAAGAAGGTCCTCAAGTTCCAACAATAGACCTAAAAGAAATAAACTCTTCAGATGAAATAGTTAGAGGAAAATGTAGAGAGAAGCTTAAGAAAGCTGCAGAGGAATGGGGTGTGATGCATCTAGTGAACCATGGTATATCTGATGATCTTATTGATCGTTTGAAGAAAGCTGGTGAAACATTTTTTGAGCTTCCTGTTGAAGAAAAAGAGAAATATGCAAATGATCAAAGTTCAGGGAAGATTCAAGGTTATGGAAGTAAATTAGCTAACAATGCTAGTGGTCAACTTGAATGGGAAGATTATTTCTTTCATTGCATTTTTCCAGAGGATAAACGTGATTTGTCTATATGGCCTAAGACACCTGCTGATTATACGTTAGTAATTTCTTCTGTGTATACTTTCTCTTCTCATAATTTTCCAATTCATTCTTTGGTTTTTTTTTATTTTAAAAAAACTTAATTGTAGTTTTGACCCAAAAATCGCAATTTTACGATTTTTGACCCAAGTCAAAAATCATAATTGTATGATTTTGACCCTCATCTTTTTTTGAGTGGTTTTGATCTCTTATATTTCCTTATTTATTTATAATTTGGTAGTCTCTCAATTTTCATCGAAATTAATGTTGCTGTAGCATCAATTATTGACATAGTACCCAGTTGGACCAGTGTCGGTCAATATATGACGCTACATGAAGGTAAGTTTGAGAGAGAGACTACCAAATCATCACAAAGAAGAAAAATATAAGGGACTACAATCGCTCAAAAAATAGTAGAGTGTCACAATCGCACAATTGTAATCAGAGCGCAAAAATCACAATCAAGTCAAAAAGTTACTAATGGTGTTTCTATTTTAATATTGAGTTTGGCTTGGTAAAAAAATTTATTGTACAAGTTATGTTTAAAATATGAAATTAATATATTGATTTCTTTTATTAGATTCTAAAGGGAAAAATAAAATAGAACCAACCTTTTTTCTCTTATCAATTTAAATTAGTGAGATATATAACCCAGATTTCAAAAACACATGTATGTCTGTTTCTTTTCTTAATTCTCACTTAGTTATTGTATCCAAGTAAAACACAAATGACATTGATTATATTTTGATTAACCATTTCATTATTTTTTTTCTTTCTAGAAATGCTTAAATATGTCTTTACTCCATGTAAAAATAAGTTTTTTGTTTTTTTGTTTTTGTTTTTAGACCTTCTAAATATTCCATTTTTTGTGTTTGACCATTAGCCTTTTGCATAGCTTTCATAAAATTTATTGATATTACAATTGGTATATATGTAATTTTCATTTTAATCCTTATTATTTTTTGCATGTTTTATCAAAATAATTTTTTTGGTGTATGCATGCAGTGAGGTTACAAGTGAATATGCAAAGGAATTAAGAGTCCTAGCTAGCAAGATAATGGAAGTGTTATCTCTTGAACTAGGATTGGAAGGAGGAAGGTTAGAAAAAGAAGCTGGTGGAATGGAAGAGCTTTTACTTCAAATGAAAATTAATTACTACCCAATTTGCCCTCAGCCAGAGCTAGCACTTGGAGTTGAAGCCCATACAGATGTAAGTTCACTTACATTCCTCCTCCATAATATGGTCCCAGGTTTGCAACTTTTCTATGAGGGCAAATGGGTCACTGCAAAATGTGTACCTGATTCAATTCTCATGCATATTGGTGACACAATTGAGATACTTAGCAATGGAAAGTACAAAAGTATCCTTCATCGTGGATTGGTGAATAAGGAAAAAGTTAGAATATCTTGGGCAGTGTTTTGTGAACCACCTAAGGAGAAAATTATTCTGAAGCCACTTCCTGAACTTGTAAGTGAAAAAGAACCAGCAAGGTTTCCACCTCGCACTTTTGCTCAGCATATTCATCACAAACTTTTTAGGAAGGATGAGGAGGAGAAGAAAGATGATCCCAAAAAATGA
Protein sequence

>MS.gene025743.t1

MGRVESLALSGIASIPKEYVRPKEELTNIGNIFEEEKKEGPQVPTIDLKEINSSDEIVRGKCREKLKKAAEEWGVMHLVNHGISDDLIDRLKKAGETFFELPVEEKEKYANDQSSGKIQGYGSKLANNASGQLEWEDYFFHCIFPEDKRDLSIWPKTPADYTEVTSEYAKELRVLASKIMEVLSLELGLEGGRLEKEAGGMEELLLQMKINYYPICPQPELALGVEAHTDVSSLTFLLHNMVPGLQLFYEGKWVTAKCVPDSILMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPELVSEKEPARFPPRTFAQHIHHKLFRKDEEEKKDDPKK