AlfalfaGEDB | MS.gene02624

M. sativa cultivar XinJiangDaYe / MS.gene02624

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02624.t1	XP_013461346.2	96.1	712	22	1	1	706	1	712	0.00E+00	1234.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02624.t1	Q9LRV2	52.5	671	319	0	36	706	26	696	4.0e-173	609.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02624.t1	A0A396J2R9	96.1	712	22	1	1	706	1	712	0.0e+00	1234.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene02624	MS.gene08252	PPI
MS.gene02624	MS.gene023392	PPI
MS.gene02624	MS.gene44296	PPI
MS.gene02624	MS.gene016662	PPI
MS.gene02624	MS.gene45754	PPI
MS.gene02624	MS.gene056174	PPI
MS.gene027719	MS.gene02624	PPI
MS.gene29173	MS.gene02624	PPI
MS.gene86216	MS.gene02624	PPI
MS.gene95256	MS.gene02624	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02624.t1	MTR_3g088820	96.132	698	21	2	15	706	1	698	0.0	1389
MS.gene02624.t1	MTR_7g076020	30.901	644	377	6	96	705	26	635	9.76e-105	338
MS.gene02624.t1	MTR_7g076020	26.437	522	341	8	78	594	140	623	2.18e-51	192
MS.gene02624.t1	MTR_7g076020	28.910	422	261	7	69	489	239	622	2.34e-47	180
MS.gene02624.t1	MTR_7g100810	30.046	659	423	5	54	705	43	670	1.96e-104	337
MS.gene02624.t1	MTR_7g037430	30.665	662	389	6	81	705	151	779	6.78e-101	331
MS.gene02624.t1	MTR_7g037430	28.759	532	340	5	106	633	75	571	2.34e-76	264
MS.gene02624.t1	MTR_7g037430	27.224	562	393	8	32	582	203	759	5.09e-67	238
MS.gene02624.t1	MTR_7g037430	30.786	471	287	8	153	619	21	456	9.49e-65	231
MS.gene02624.t1	MTR_5g008840	29.453	713	446	8	42	702	8	715	4.53e-100	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02624.t1	AT3G26540	51.403	677	329	0	30	706	20	696	0.0	719
MS.gene02624.t1	AT3G53360	30.917	676	423	6	36	701	27	668	4.73e-105	338
MS.gene02624.t1	AT3G53360	30.917	676	423	6	36	701	27	668	4.73e-105	338
MS.gene02624.t1	AT4G35130	29.805	614	386	9	98	706	58	631	1.76e-95	313
MS.gene02624.t1	AT2G33680	30.265	641	404	9	70	701	12	618	2.16e-93	306
MS.gene02624.t1	AT2G33680	30.265	641	404	9	70	701	12	618	2.16e-93	306
MS.gene02624.t1	AT2G33680	30.265	641	404	9	70	701	12	618	2.16e-93	306
MS.gene02624.t1	AT5G16860	29.800	651	426	11	77	704	34	676	2.27e-93	309
MS.gene02624.t1	AT4G21300	30.116	601	386	4	107	705	174	742	3.23e-93	308
MS.gene02624.t1	AT4G21300	24.585	602	406	8	77	669	41	603	2.17e-59	215

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Find 180 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGCAAGTATACTTT+TGG	0.294834	3.3:+74851709	MS.gene02624:CDS
AAATGCCTCAACGAGATGGT+GGG	0.638391	3.3:+74850594	MS.gene02624:CDS
AAATGGGCGTAGAGAGAGTG+AGG	0.461437	3.3:-74850410	None:intergenic
AAATGTGTCTGCTGGCCTTT+TGG	0.249634	3.3:+74851438	MS.gene02624:CDS
AACAAAGAAATCGTCTCATC+TGG	0.411351	3.3:-74850659	None:intergenic
AACCTTATGGGCTGAGGCGA+TGG	0.458173	3.3:-74850459	None:intergenic
AAGCTTCAAGTGCACGGTTG+CGG	0.472307	3.3:-74850526	None:intergenic
AAGTGCACGCATACTAGAAC+AGG	0.462895	3.3:-74851047	None:intergenic
AAGTGTGGTGAATTGGAGAA+TGG	0.522289	3.3:+74851160	MS.gene02624:CDS
AATACTTATTCGCTACGCCT+CGG	0.552790	3.3:+74851754	MS.gene02624:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGGATTTATCATTAGACA+TGG	+	chr3.3:74851787-74851806	MS.gene02624:CDS	30.0%
GATATACCCGATTCTTTAAA+TGG	+	chr3.3:74851338-74851357	MS.gene02624:CDS	30.0%
GTTGATGTTTATGCTAAATG+TGG	+	chr3.3:74850842-74850861	MS.gene02624:CDS	30.0%
TGATTGGATTACTTCATCTT+GGG	-	chr3.3:74850318-74850337	None:intergenic	30.0%
TTCAGATAGATAGTGTAATC+AGG	+	chr3.3:74851812-74851831	MS.gene02624:CDS	30.0%
TTGACATGTATGGTAAATGT+GGG	+	chr3.3:74851542-74851561	MS.gene02624:CDS	30.0%
TTGATTGGATTACTTCATCT+TGG	-	chr3.3:74850319-74850338	None:intergenic	30.0%
TTTACCATACATGTCAAGAA+TGG	-	chr3.3:74851539-74851558	None:intergenic	30.0%
TTTCTTTCAATGAATAAGGC+TGG	+	chr3.3:74850680-74850699	MS.gene02624:CDS	30.0%
AACAAAGAAATCGTCTCATC+TGG	-	chr3.3:74850662-74850681	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	74850203	74852323	74850203	ID=MS.gene02624
chr3.3	mRNA	74850203	74852323	74850203	ID=MS.gene02624.t1;Parent=MS.gene02624
chr3.3	exon	74850203	74852323	74850203	ID=MS.gene02624.t1.exon1;Parent=MS.gene02624.t1
chr3.3	CDS	74850203	74852323	74850203	ID=cds.MS.gene02624.t1;Parent=MS.gene02624.t1

Gene Sequence

>MS.gene02624

ATGAGCGATCGCCGATTACCCATCCGTTCCTATGGCCGTAAAATGTCGCTGCTTCTGCGCCGAACCAACTCCCCCACCACGAACCACCACCCACCCACCACCATCACCGTCACCCAAGATGAAGTAATCCAATCAATCCTCAACTGTCTAAAATCTGGCCACATCCAAAAAGCCGCATCCATTCTCTTCGACTTCCCACTACCCTTCCCTCACTCTCTCTACGCCCATTTCTTCCGTCACTGTCGCTCTCCAAAATCCATCGCCTCAGCCCATAAGGTTGAGTTCCACTTAGTCGCCACCACTCGCAATCCACCTATATTCCTCCGCAACCGTGCACTTGAAGCTTATGCGAAATGCTCCTCTCTTCATGATGCACAGGAACTGTTTGATGAAATGCCTCAACGAGATGGTGGGTCATGGAATGCTTTGATTACTGCTTATTCTCGATTGCGGTATCCAGATGAGACGATTTCTTTGTTTCTTTCAATGAATAAGGCTGGTGTTCGTGCCAATAACATCACATTTGCCAGTGTTCTTGGGTCGTGTGCTGATGTTTATGAGCTTTCTCTTTCACAGCAGGTTCACGGGCTTGTTGTGAAATTTGGTTTTTTGAGCAATGTGATAATTGGGAGTGCTCTTGTTGATGTTTATGCTAAATGTGGGATTATGCTTTATGCTCGCAGGATGTTTCATGAAATTCCTCGTCCAAATGCTGTTACTTGGAATGTTATTGTAAGGCGGTATCTTGATGTTGGTGATGCAAAGGAAGCTGTCTTGTTGTTCACACGCATGTTTTCTGATGGAGTTAAGCCGTTGAATTTTACATTCTCTAATGCTCTTGTTGCCTGTTCTAGTATGCGTGCACTTGAGGAGGGGATGCAAATTCATGGGGTTGTTGTGAAACAGGGACTTCATGAGGATAATGTTGTTTCGAGCTCGCTAATCAATATGTATTTCAAGTGTGGTGAATTGGAGAATGGTTCTCGGGTTTTTCATCAGCTTGGTTCGAAAGATTTAGTGTGTTGGACTTGCATTGTGTCAGGGTATGCAATGAGTGGGAAAACTTGGGACGCAAGAAAGCTTTTTGATCAGATGCCTGTACGAAATGTGATATCGTGGAATGCTATGTTGGCTGGATATACCCGATTCTTTAAATGGTCTGAGGCATTAGATTTTGTTTGTTTGATGCTTGACACTGTAAAGGACTTGGACCATGTCACTCTTGGTTTGATGATAAATGTGTCTGCTGGCCTTTTGGATCATGAAATGGGGAAACAGCTTCATGGATTTGTCTATCGACATGGTTTCCACTCGAACCTTATGGTTGGCAATGCCATTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGTGCCCGAGTTTGGTTTAACCTGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTATTGGCTAGTTGTGGCCTTCATCATTCAAGCGAAGCAACACTAACAATGTTTTCAGAGATGCAATGGGAGGCAAAACCAAGCAAGTATACTTTTGGAACCCTTTTAGCAGCATGTGCAAATACTTATTCGCTACGCCTCGGCAAGCAAATTCATGGATTTATCATTAGACATGGATTTCAGATAGATAGTGTAATCAGGACTGCTTTGATTTACATGTACTGTAAATGCTACTGTCTTGAGTATGCTGTTGAGATTCTGAAAGGGGCGGTTTCCAGGGACGTGATAATGTGGAATACCTTAATTTTGGGATGTTGTCACAATCATAGGGGAAGAGATGCACTTGAACTTTTTGGGATAATGGAAGCAGAAGGCATCAAGCCAGACCGTGTGACCTTTGAGGGCATTCTTCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACTCAATGCTTCGAGTCTATGAGCAATGAATACGGTGTCCTGCCTCGGTTGGAGCATTATGGCTGCATGATTGAACTCTATAGTCGGCATGGATACATGGATGAGCTCGAGAGTTTTATGAAAACAATGACAATAGAGCCTACACTTCCCATGTTGGAACGAGCCCTTGATGCTTGTCAGAAAAATGACTCCCCAAGACTGGGAAAATGGATTGCAAAAAAAATTCATGAATTTGAATATTGA

Protein sequence

>MS.gene02624.t1

MSDRRLPIRSYGRKMSLLLRRTNSPTTNHHPPTTITVTQDEVIQSILNCLKSGHIQKAASILFDFPLPFPHSLYAHFFRHCRSPKSIASAHKVEFHLVATTRNPPIFLRNRALEAYAKCSSLHDAQELFDEMPQRDGGSWNALITAYSRLRYPDETISLFLSMNKAGVRANNITFASVLGSCADVYELSLSQQVHGLVVKFGFLSNVIIGSALVDVYAKCGIMLYARRMFHEIPRPNAVTWNVIVRRYLDVGDAKEAVLLFTRMFSDGVKPLNFTFSNALVACSSMRALEEGMQIHGVVVKQGLHEDNVVSSSLINMYFKCGELENGSRVFHQLGSKDLVCWTCIVSGYAMSGKTWDARKLFDQMPVRNVISWNAMLAGYTRFFKWSEALDFVCLMLDTVKDLDHVTLGLMINVSAGLLDHEMGKQLHGFVYRHGFHSNLMVGNAILDMYGKCGNLNSARVWFNLMSNWRDRVSWNALLASCGLHHSSEATLTMFSEMQWEAKPSKYTFGTLLAACANTYSLRLGKQIHGFIIRHGFQIDSVIRTALIYMYCKCYCLEYAVEILKGAVSRDVIMWNTLILGCCHNHRGRDALELFGIMEAEGIKPDRVTFEGILLACVEEGLVEFGTQCFESMSNEYGVLPRLEHYGCMIELYSRHGYMDELESFMKTMTIEPTLPMLERALDACQKNDSPRLGKWIAKKIHEFEY