AlfalfaGEDB | MS.gene29173

M. sativa cultivar XinJiangDaYe / MS.gene29173

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0005575 GO:0006810 GO:0008144 GO:0008150 GO:0015399 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042626 GO:0043167 GO:0043168 GO:0051179 GO:0051234 GO:0055085 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00005.30 PF00664.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29173.t1	AES96084.2	98.4	496	8	0	1	496	31	526	5.90E-276	959.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29173.t1	Q8RY46	80.0	495	99	0	1	495	205	699	4.0e-228	792.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29173.t1	G7JYX4	98.4	496	8	0	1	496	31	526	4.3e-276	959.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene29173	0.801984	6.96E-49	-1.69E-46
MS.gene049351	MS.gene29173	0.818407	1.99E-52	-1.69E-46
MS.gene049356	MS.gene29173	0.892106	2.16E-74	-1.69E-46
MS.gene049369	MS.gene29173	0.881499	2.28E-70	-1.69E-46
MS.gene049396	MS.gene29173	0.833638	4.75E-56	-1.69E-46
MS.gene049427	MS.gene29173	0.86664	2.46E-65	-1.69E-46
MS.gene049488	MS.gene29173	0.800615	1.33E-48	-1.69E-46
MS.gene049491	MS.gene29173	0.829138	6.09E-55	-1.69E-46
MS.gene049609	MS.gene29173	0.837318	5.58E-57	-1.69E-46
MS.gene049661	MS.gene29173	0.860576	1.88E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene29173	MS.gene009632	PPI
MS.gene29173	MS.gene052919	PPI
MS.gene29173	MS.gene013716	PPI
MS.gene29173	MS.gene02624	PPI
MS.gene29173	MS.gene044461	PPI
MS.gene29173	MS.gene017262	PPI
MS.gene29173	MS.gene033048	PPI
MS.gene29173	MS.gene017260	PPI
MS.gene29173	MS.gene02511	PPI
MS.gene29173	MS.gene26232	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29173.t1	MTR_5g033080	98.387	496	8	0	1	496	31	526	0.0	1001
MS.gene29173.t1	MTR_5g033080	98.387	496	8	0	1	496	206	701	0.0	1001
MS.gene29173.t1	MTR_7g033710	63.692	493	178	1	3	495	177	668	0.0	672
MS.gene29173.t1	MTR_4g109720	38.767	503	288	4	3	496	139	630	4.57e-110	340
MS.gene29173.t1	MTR_6g008820	35.673	513	297	12	3	495	429	928	4.96e-82	273
MS.gene29173.t1	MTR_6g008820	49.412	255	121	4	240	491	16	265	2.34e-65	228
MS.gene29173.t1	MTR_4g124000	35.673	513	291	12	3	494	785	1279	1.06e-81	276
MS.gene29173.t1	MTR_4g124000	35.685	496	299	9	6	491	131	616	8.80e-78	265
MS.gene29173.t1	MTR_6g008820	35.673	513	297	12	3	495	537	1036	3.30e-81	273
MS.gene29173.t1	MTR_6g008820	51.598	219	98	4	276	491	160	373	7.12e-57	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29173.t1	AT1G70610	80.000	495	99	0	1	495	24	518	0.0	831
MS.gene29173.t1	AT1G70610	80.000	495	99	0	1	495	205	699	0.0	830
MS.gene29173.t1	AT5G39040	35.642	491	310	2	3	491	148	634	9.48e-95	300
MS.gene29173.t1	AT1G27940	38.259	494	288	8	6	491	124	608	6.26e-89	296
MS.gene29173.t1	AT1G27940	33.531	507	302	10	3	491	753	1242	4.60e-76	260
MS.gene29173.t1	AT1G28010	38.990	495	283	11	6	491	125	609	6.06e-87	291
MS.gene29173.t1	AT1G28010	34.531	501	305	8	3	491	755	1244	6.27e-75	257
MS.gene29173.t1	AT2G47000	35.211	497	304	8	3	489	791	1279	2.07e-81	275
MS.gene29173.t1	AT2G47000	34.686	493	312	6	6	493	137	624	4.92e-75	257
MS.gene29173.t1	AT2G47000	35.211	497	304	8	3	489	791	1279	2.07e-81	275

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Find 114 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGCTGCATATGGATTT+TGG	0.200298	5.3:-22240696	MS.gene29173:CDS
AAATCAGGAGGATGTTGTGT+GGG	0.659647	5.3:-22238286	MS.gene29173:CDS
AACTCTACCTGACCGCTTGT+AGG	0.455681	5.3:+22239560	None:intergenic
AAGACTTGGATGTCATGTGG+TGG	0.696777	5.3:-22238476	MS.gene29173:CDS
AAGTTGAACCTGAAGAAGAA+GGG	0.586276	5.3:+22241702	None:intergenic
AATCCTGTCAGCAGCTTGTA+TGG	0.397259	5.3:+22237627	None:intergenic
AATGAAGTTGCAGAGTTTAA+CGG	0.412167	5.3:-22239964	MS.gene29173:CDS
AATGGTTAATTTATTCAACC+TGG	0.566088	5.3:-22240378	MS.gene29173:CDS
AATTTATTCAACCTGGTGGG+TGG	0.425512	5.3:-22240371	MS.gene29173:CDS
ACAAAGACTTGGATGTCATG+TGG	0.727907	5.3:-22238479	MS.gene29173:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTATGATCTGCTTTAC+AGG	-	chr5.3:22241405-22241424	MS.gene29173:intron	30.0%
AATGAAGTTGCAGAGTTTAA+CGG	-	chr5.3:22239098-22239117	MS.gene29173:intron	30.0%
ATGTACCTGTTACAATTGAA+TGG	+	chr5.3:22239282-22239301	None:intergenic	30.0%
ATGTATGTTATTGTTATGGG+AGG	-	chr5.3:22239625-22239644	MS.gene29173:intron	30.0%
ATTATTGAAGGATCAACTAG+AGG	+	chr5.3:22239853-22239872	None:intergenic	30.0%
CAAATCCTAGAGTTGTATAT+AGG	+	chr5.3:22238917-22238936	None:intergenic	30.0%
CATGTATTACTGGAACTATT+TGG	-	chr5.3:22241758-22241777	MS.gene29173:intron	30.0%
CCTTATTCTAGATTCTTTAC+TGG	-	chr5.3:22240285-22240304	MS.gene29173:CDS	30.0%
CTAGAAGCAATTTCTTACAA+TGG	+	chr5.3:22239351-22239370	None:intergenic	30.0%
GGCAATAGTTATTCTCTTAA+TGG	+	chr5.3:22241698-22241717	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	22237130	22241954	22237130	ID=MS.gene29173
chr5.3	mRNA	22237130	22241954	22237130	ID=MS.gene29173.t1;Parent=MS.gene29173
chr5.3	exon	22241946	22241954	22241946	ID=MS.gene29173.t1.exon1;Parent=MS.gene29173.t1
chr5.3	CDS	22241946	22241954	22241946	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22241711	22241755	22241711	ID=MS.gene29173.t1.exon2;Parent=MS.gene29173.t1
chr5.3	CDS	22241711	22241755	22241711	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22241487	22241609	22241487	ID=MS.gene29173.t1.exon3;Parent=MS.gene29173.t1
chr5.3	CDS	22241487	22241609	22241487	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22241299	22241402	22241299	ID=MS.gene29173.t1.exon4;Parent=MS.gene29173.t1
chr5.3	CDS	22241299	22241402	22241299	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22241015	22241069	22241015	ID=MS.gene29173.t1.exon5;Parent=MS.gene29173.t1
chr5.3	CDS	22241015	22241069	22241015	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22240854	22240924	22240854	ID=MS.gene29173.t1.exon6;Parent=MS.gene29173.t1
chr5.3	CDS	22240854	22240924	22240854	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22240660	22240762	22240660	ID=MS.gene29173.t1.exon7;Parent=MS.gene29173.t1
chr5.3	CDS	22240660	22240762	22240660	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22240275	22240485	22240275	ID=MS.gene29173.t1.exon8;Parent=MS.gene29173.t1
chr5.3	CDS	22240275	22240485	22240275	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22239914	22239987	22239914	ID=MS.gene29173.t1.exon9;Parent=MS.gene29173.t1
chr5.3	CDS	22239914	22239987	22239914	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22239732	22239788	22239732	ID=MS.gene29173.t1.exon10;Parent=MS.gene29173.t1
chr5.3	CDS	22239732	22239788	22239732	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22239568	22239642	22239568	ID=MS.gene29173.t1.exon11;Parent=MS.gene29173.t1
chr5.3	CDS	22239568	22239642	22239568	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22238449	22238523	22238449	ID=MS.gene29173.t1.exon12;Parent=MS.gene29173.t1
chr5.3	CDS	22238449	22238523	22238449	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22238089	22238370	22238089	ID=MS.gene29173.t1.exon13;Parent=MS.gene29173.t1
chr5.3	CDS	22238089	22238370	22238089	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22237736	22237800	22237736	ID=MS.gene29173.t1.exon14;Parent=MS.gene29173.t1
chr5.3	CDS	22237736	22237800	22237736	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22237597	22237657	22237597	ID=MS.gene29173.t1.exon15;Parent=MS.gene29173.t1
chr5.3	CDS	22237597	22237657	22237597	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1
chr5.3	exon	22237130	22237210	22237130	ID=MS.gene29173.t1.exon16;Parent=MS.gene29173.t1
chr5.3	CDS	22237130	22237210	22237130	ID=cds.MS.gene29173.t1;Parent=MS.gene29173.t1

Gene Sequence

>MS.gene29173

ATGATTCTGGTGAGTGTTCTGTCGATATTTGTTGTTGTTAATTTAGATGGTTGATAATCATATCAAATGGATTCGATTACCATAAGGAATTAAGAATTATAGCTATCAAATTAAGACTATTGTACTTGAGCAAAGGCCATTCTATAGACTCCTGTGCCCAATACCCATTGAACTTGACATAAATAATTTATATGTGCAGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGTTCAACTTCACTTAATAACTGATTTCTCTTGTTGCGTTTATTATTTTATTTTCTTCTTTTGGTGTATGGTTTAACTCATTTGGTAGTGCCCTTATTGTAGGATATATCATTTTTTGACAATGAAACAGTAGGTGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAATTTGATACTGCGCAATGTCCTTCAGGTTGATTTATTTACATAATAAAGCTAATAGAAGTTATCCCACACAATGGAGGCTTTAATTGGAGTATTTTTTTCGTCTTCATAGGGAGGAGGTTCATTGATCTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACGCTGGTGATATGCTCCATATTAGCAGCGGTCATGTTACGTTATGGATGGTAATTCTTTGTTGATTTAATTCAAATTTGTCATTTAACAACTTGATATTGCATTTCTTTCTAGTAGCTTACAGTTGACTAGTGCAAAGCTTTGTCCGATACAATGTGTTTTTCGAAATATTCATATATTGCATACTAAAAATGAAAAGTTGGTGTTTTTAAGTTCCTTTCCTGGCTCTTACATCTTTTCCTGTCACCGGTGTTAATTTGATTATATATTTTTGCATAGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCGAATAATGTAGAATAAGATGCCTTATACTATAATAATTTGTTTTATTTTTTCCCGAATTGTCACCATGATAACAATTTTCTCAATATTAAATCATAGGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTTCGAGTTTACGGAACCGAAGAAGAAGAAAGCGGAAGGTAATAATGCTATTGTAAATATAACATCTGTTATCTATACGTTCCCATTGTTTATGTTGTAATCACATATCTTGTCCATCTCTATCTACAGGTACAAATGGTGGCTGGAAAAATTAGCTGACATAAGCTTGCGACAAAGCGCTGCATATGGATTTTGGAATTTTAGCTTCAACACTCTTTATCATTCAACTCAGGTATGACTAAGGGTTTTGAAAGACATGGCATTTTCTGTTGTTTATTTGCTTTTTCCTTTTCAACCTATGATCTTACATATTGAATAAAAAATTTCTAGAATTAATAATCAATAATTTTTTCTTTTAAACTTCTGTACTTGACTTTTGCTTTTATTGAAACATCTAATGTTGTAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTATCGGGTCATATTACAGCAGAGAAACTTACGAAGTTTATACTATATAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGGGATAATGTATCCAATTTAATGCAATCAGTTGGAGCTAGTGAAAAGGTGTTCAACTTGATGGATCTCTCACCTAGCAGCCAATTTATAACAGAAGGCAAGCATTTTTAAGAGCTATGTTCAATTCAGCTATTTCATTAGTAAAAATAAACATGTTGATTTAATCCTTTTCATGTTTCATTTGATTTTACTAAGTTAACACCTATATACAACTCTAGGATTTGCTTCTATTCTCCCTCGTCCACCAGTAGTATCATATAATATAACTTAATAAATAATAGAAAAGATAAAGCTCATATGATAGACAAGACGAATTACCACATAACATTTTGTCCGTGTTGTATTTCAAATATATTTGAAAGTTGGATGTAATTTTTGTTACAGGAATGAAGTTGCAGAGTTTAACGGGGCATATTGAGTTTGTAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTAAACCTCATAAAACTAATATCTTCACTTGACTCATAGTGTTGAAAGCTTGTATATCCGATACTCGTTTTTTAAATCATCGTTTTTTATACAAGCTCAGTTAATGACCCATTCAATTGTAACAGGTACATGTAGTGCAACGTGTAAACTTTGTTGTCAATCCTAGTGAGGTGGTTGCCATTGTAAGAAATTGCTTCTAGTCTCTTCAATTCGTTCCTTCCCTGCATTATGGTTAATAGGCTGATCTGCTGGTTCTTTTCATTTGGCATAGGTTGGTCTTAGTGGTAGCGGGAAAAGCACTTTGGTGAATCTATTACTCCGTCTCTACGAGCCTACAAGCGGTCAGGTAGAGTTTGTTTATTTCGTTAAAACTGATATTGGACTAAGATAATTTTAGTTAAAAATATTGAATTTTAATGAAAAGTCTAAGTGGGGAATAAAGCAACTTTTTTTGATGTATGTTATTGTTATGGGAGGAGGGGTTCTCTCGTTTTGCCAAATATATGCAAGCGGTCAAAAAGAATTATCCTCTATCTTTCGCAAAAATGACCGTTTTCTCTTCCATTGGATGTTTCATATCGCATGAGTGTGTTAACCTCTATAGTTGAACCAGAAGTTCAAAGTACGAGATGATCTTTATCTTTGCTTCTTTTTAATAGTCTTAATTACACTTTTGATCCCTCTAGTTGATCCTTCAATAATTTTTTTGGCGATCTTGGTCTCAATTTTTATATTGCTACAATTAAGTTCCCCTATCCCTTTCTATTAATTAAAAACTGTTAAACTTCACGTAATTTATTGAAATTTTCATAAAGTTAAATTGATTACATGGCTCTAAACATTCTTCACTTAATTATTTGAAATCTTAAATCCATCAACAAACCTCAATTATTTTAATTTTAATGAAAAATGGGACTTCTAGGATTTTATGTGAAACAAAATTGACAGCAGGACAATATATGCTTAATTTTAAAAATTGAGATATTGAAATAGCTCAAAAAATGAATGAAAGACCAAAATCGCACATATCCTAAACGAGAGACCAAAAATACAATTAAACACTTTTAATGATCAGGTTAGAGAACTTCATGTGTTCTGAATCCAGGTGCTTATACCTTATTCTAGATTCTTTACTGGTAATTAATTGATTTTCTCGAACTTGATTGTATTACTTTCGCGTAAAATCAACTTTGGCTGATTATATTTAGTTTTGTACTATTTGTTTTTGTAATTTGAACTTGTTAAGCTTAAATCAGTGTTTTCCACCATTTCAGACATTGATCTAAGATTTCTCTCTCATAATTAGATATACAGTACATATGTCATGCGGGTAATAGTTTTAGGGAAGATACCATTTCATCTTGAATATTCAGAAATTGTTTTATTGCAGATTTTGATAGACGGTGTCCCTCACAAAGACTTGGATGTCATGTGGTGGAGAGAGAGGATCGGATATGTGGGACAGGTACTTAGGAAAACTAACAGGAACAAAATTCATTGAATCGACATAGCTCCTTTCTTACGGAAATTTTTATTTGTACAGGAACCAAAGTTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGCGATGTAAATCAGGAGGATGTTGTGTGGGCTGCAAAGCAGGCCTATGCTCATGACTTTATCTCAGCACTTCCTAGTGGTTATGAAACACTTGTTGATGACGATCTCTTAAGTGGTGGACAAAAGCAACGAATTGCTATCGCTAGGGCCATTCTTAGGGACCCGAAAATATTGATTCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAACATAATGTGAAGGTATGATTATGGAAGATGATAATTACTAGAAGCCAGATGAAAATTAGAGACACTGAATGTGAAGTGTGATAAACTATATAACACCGGTCCTTCAGATTGAAGGCAGGTCCGGTGTTCGACATGAGTCAATATCTGACACCGACATAACATTGACACATGCGATTACATAAAATAAATTCCATTGTTATAAATTATTACCGGTTTCTACTTGTCAGTGTCGTGTTTGTGCTTTCATAGGTGATAAATAATAAGTGAGGATATTGATGCTTCAGTTTCCATTACATGTAGGGTGTTCTTCGATCGGTTAGAAGTGATTCTTCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGTGATACTTTTGTTCAGTGTCAATTAAATGGTACTGATATTTTGGTATTAGTTTTGAAATGTATGATCTGCTTTACAGGCTTTCTACCATACAAGCTGCTGACAGGATTATTGTGATGGATAAGGGTCAAATAGTTGAGGTTGGTGATTTGATGATTTACTTTGAATGCCCTAATTATTTTTACAAATGTTCCTTTTTAAACGTTAGTATCCTTTATATACTCATGACTTGTTTTTCTATCCATTGACACTGTAAAGTTGAGCTACAAGGTTTAACATTTCTCTGCACTATTTTAAATACAAACTTGACTCCTTAAATTTCTCTGCTGGATCATGATGGATATACACCATTAAGAGAATAACTATTGCCACACAGAACATATGAATAGAATAAGACTTTTTTAAATTCGCATGTATTACTGGAACTATTTGGGTTTCATGTGTTTGAATGAAAAACTACATTTATTCATGTATTTTTCTATTATCTGTTCTTTGCCTTAACCTGAAACATTTGTCTGCCTCTCAGAATGGAAGTCACAGGGAACTTCTCTTGAAAGATGGTTTATATGCTCGATTGACTAGAAAACAGGCTGATACCATGGAATGA

Protein sequence

>MS.gene29173.t1

MILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGWYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEESGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQVIAVLFGGMSILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDLSPSSQFITEGMKLQSLTGHIEFVNVSFHYPSRPTVHVVQRVNFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVNQEDVVWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSSRRSVIVIAHRLSTIQAADRIIVMDKGQIVENGSHRELLLKDGLYARLTRKQADTME