AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026453

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026453.t1 MTR_1g033390 89.573 211 22 0 1 211 1 211 4.22e-136 380
MS.gene026453.t1 MTR_1g033360 43.216 199 112 1 10 208 16 213 6.12e-56 177
MS.gene026453.t1 MTR_1g100643 39.048 210 125 1 1 207 5 214 5.19e-55 175
MS.gene026453.t1 MTR_6g017105 37.436 195 118 1 14 204 19 213 6.34e-42 142
MS.gene026453.t1 MTR_1g100643 39.130 161 95 1 50 207 1 161 9.57e-40 134
MS.gene026453.t1 MTR_5g053250 35.762 151 92 2 45 191 56 205 1.30e-27 105
MS.gene026453.t1 MTR_5g053250 35.616 146 89 2 50 191 1 145 1.32e-25 98.6
MS.gene026453.t1 MTR_5g053250 29.032 217 118 5 10 191 17 232 7.66e-22 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026453.t1 AT1G14730 50.000 202 100 1 9 210 20 220 3.31e-73 221
MS.gene026453.t1 AT4G25570 36.449 214 133 1 1 211 5 218 4.28e-53 171
MS.gene026453.t1 AT4G25570 36.449 214 133 1 1 211 46 259 3.52e-52 169
MS.gene026453.t1 AT5G38630 37.811 201 118 2 15 208 17 217 5.69e-45 149
MS.gene026453.t1 AT1G26100 33.523 176 105 4 10 183 15 180 1.18e-24 97.4

Find 46 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGCTTGTTTGGTTTGC+AGG 0.140094 1.1:-18384694 MS.gene026453:intron
TTAAAATTTAACAGCTATTA+TGG 0.166099 1.1:-18384886 MS.gene026453:intron
TTGGTTACATTCTTGGTTCC+TGG 0.272137 1.1:-18383773 MS.gene026453:CDS
CCGCATCTTTACAGTCTTCA+TGG 0.276421 1.1:-18384735 MS.gene026453:CDS
GCAATATGTGCTGCATTAAC+AGG 0.288180 1.1:-18383680 MS.gene026453:CDS
GGTCTTTCAATTCTATTGTT+TGG 0.306287 1.1:-18383587 MS.gene026453:CDS
CTTCACCAGCAAGGAAAATA+AGG 0.306596 1.1:+18385863 None:intergenic
CCTTCATACTCATACTTGTT+TGG 0.309677 1.1:-18386076 MS.gene026453:CDS
AGGCTTAGGAACATCATTAA+AGG 0.317240 1.1:+18385883 None:intergenic
ATTGTCACCTTCTGCTTGTT+TGG 0.329434 1.1:-18384702 MS.gene026453:CDS
TCAGGTTTGGCTCATTTGTT+TGG 0.341278 1.1:-18386107 MS.gene026453:CDS
GTCTTTGTGCGGGTACCGTT+TGG 0.366595 1.1:+18384859 None:intergenic
ACATCAGACAGAAACTAATT+TGG 0.367590 1.1:-18383621 MS.gene026453:CDS
ACTAATTTGGTCACCTTCAC+TGG 0.396568 1.1:-18383608 MS.gene026453:CDS
CTTGTTGCATCTTGTGCTCC+AGG 0.406946 1.1:+18383755 None:intergenic
TATCAGGAAGCTTGTTCATA+TGG 0.419940 1.1:-18384835 MS.gene026453:CDS
TACAGTCTTCATGGATGGAT+TGG 0.420550 1.1:-18384726 MS.gene026453:CDS
TGCCATTGTAATGTCAGGTT+TGG 0.435462 1.1:-18386120 MS.gene026453:CDS
TGCTGCATTAACAGGGTTGA+TGG 0.454100 1.1:-18383672 MS.gene026453:CDS
TACCCGCACAAAGACATATC+AGG 0.463004 1.1:-18384851 MS.gene026453:CDS
ATTGACTATGCTTCCGTGGA+TGG 0.467721 1.1:-18386032 MS.gene026453:CDS
GCGGAATATTTAGCATATCA+TGG 0.474457 1.1:+18384754 None:intergenic
ATGAGTGCCATTGTAATGTC+AGG 0.479739 1.1:-18386125 MS.gene026453:CDS
GGCTTAGGAACATCATTAAA+GGG 0.482631 1.1:+18385884 None:intergenic
CAGCAAGGAAAATAAGGCTT+AGG 0.494373 1.1:+18385869 None:intergenic
ATCTTTACAGTCTTCATGGA+TGG 0.510201 1.1:-18384731 MS.gene026453:CDS
CAAGAGCTAGAGTGCTTCCA+TGG 0.524373 1.1:-18383736 MS.gene026453:CDS
AGCTATTATGGCATTCCAAA+CGG 0.526255 1.1:-18384874 MS.gene026453:CDS
CTTCCTGATATGTCTTTGTG+CGG 0.537316 1.1:+18384848 None:intergenic
GGCTGGTTTCTTGAAACTGA+GGG 0.543574 1.1:-18383645 MS.gene026453:CDS
CCAAACAAGTATGAGTATGA+AGG 0.550105 1.1:+18386076 None:intergenic
ACAGGGTTGATGGAGAAGGC+TGG 0.560279 1.1:-18383662 MS.gene026453:CDS
GTGCTTCCATGGCACAAAGT+TGG 0.562421 1.1:-18383725 MS.gene026453:CDS
TTACCACCAACTTTGTGCCA+TGG 0.569979 1.1:+18383719 None:intergenic
TTCCTGATATGTCTTTGTGC+GGG 0.571362 1.1:+18384849 None:intergenic
CTTCCATGGCACAAAGTTGG+TGG 0.575822 1.1:-18383722 MS.gene026453:CDS
TAGAATTGAAAGACCAGTGA+AGG 0.581454 1.1:+18383595 None:intergenic
TGCATATACCTTCACCAGCA+AGG 0.583434 1.1:+18385854 None:intergenic
ATTAACAGGGTTGATGGAGA+AGG 0.597536 1.1:-18383666 MS.gene026453:CDS
AGGCTGGTTTCTTGAAACTG+AGG 0.602429 1.1:-18383646 MS.gene026453:CDS
AGGGATTGACTATGCTTCCG+TGG 0.627678 1.1:-18386036 MS.gene026453:CDS
CTGCAAACCAAACAAGCAGA+AGG 0.637468 1.1:+18384695 None:intergenic
CCATGAAGACTGTAAAGATG+CGG 0.657005 1.1:+18384735 None:intergenic
AGCCAAACCTGACATTACAA+TGG 0.660651 1.1:+18386118 None:intergenic
CAATATGTGCTGCATTAACA+GGG 0.682347 1.1:-18383679 MS.gene026453:CDS
GAAGACGCGAAATCCATCCA+CGG 0.694348 1.1:+18386019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAATCAATTTAATTAA+GGG + chr1.1:18384083-18384102 None:intergenic 10.0%
!! TTAGAAAATCAATTTAATTA+AGG + chr1.1:18384084-18384103 None:intergenic 10.0%
!!! CAAATTTTAGAATTTAAATT+GGG + chr1.1:18385097-18385116 None:intergenic 10.0%
!!! TCAAATTTTAGAATTTAAAT+TGG + chr1.1:18385098-18385117 None:intergenic 10.0%
!! AATATATCTCAATTTATTCA+TGG - chr1.1:18384758-18384777 MS.gene026453:CDS 15.0%
!! ATATATCTCAATTTATTCAT+GGG - chr1.1:18384759-18384778 MS.gene026453:CDS 15.0%
!! TAAAAAAACTATCATTATCT+TGG - chr1.1:18385681-18385700 MS.gene026453:intron 15.0%
!! TTAAAATTTAACAGCTATTA+TGG - chr1.1:18384792-18384811 MS.gene026453:CDS 15.0%
!! TTTATTCAATAAAAGATTGA+GGG + chr1.1:18384293-18384312 None:intergenic 15.0%
!!! AAAAACAATCAAATAGTTTT+AGG - chr1.1:18385220-18385239 MS.gene026453:intron 15.0%
!!! GATATATTGACTTTAATAAT+AGG - chr1.1:18385841-18385860 MS.gene026453:intron 15.0%
!!! TCATATATAAATGCTTTTTT+AGG - chr1.1:18385022-18385041 MS.gene026453:intron 15.0%
!!! TTTTATTCAATAAAAGATTG+AGG + chr1.1:18384294-18384313 None:intergenic 15.0%
!!! TTTTTTAGGTAAAAATAGTT+TGG - chr1.1:18385036-18385055 MS.gene026453:intron 15.0%
!! AATATCTTGATTGTTATCTT+GGG - chr1.1:18385513-18385532 MS.gene026453:intron 20.0%
!! ATTCCATCGAATAAAATAAT+AGG - chr1.1:18384373-18384392 MS.gene026453:intron 20.0%
!! TAAGTGTATGTTTAGATTAA+CGG + chr1.1:18384711-18384730 None:intergenic 20.0%
!! TAATATCTTGATTGTTATCT+TGG - chr1.1:18385512-18385531 MS.gene026453:intron 20.0%
!! TGAGATCCTTTAAATTTAAA+AGG - chr1.1:18384424-18384443 MS.gene026453:intron 20.0%
!!! AAATAGTTTTAGGATATGTT+CGG - chr1.1:18385230-18385249 MS.gene026453:intron 20.0%
!!! ATATAAGCTTTTGAATAAGA+CGG - chr1.1:18385481-18385500 MS.gene026453:intron 20.0%
!!! ATATTTCAATGTGTTTTTTG+AGG - chr1.1:18385119-18385138 MS.gene026453:intron 20.0%
!!! TAACTTTTACTAAAATCGTA+AGG + chr1.1:18384637-18384656 None:intergenic 20.0%
!!! TGAGTTTTATACTTTAGAAA+TGG + chr1.1:18384348-18384367 None:intergenic 20.0%
!!! TGGTAAAGTACTATTTTTTA+TGG - chr1.1:18385976-18385995 MS.gene026453:intron 20.0%
!!! TGTTTTCTAGAAAGAAAAAA+GGG + chr1.1:18384032-18384051 None:intergenic 20.0%
!!! TTGTTTTCTAGAAAGAAAAA+AGG + chr1.1:18384033-18384052 None:intergenic 20.0%
!!! TTTAATGTTTTATTGTTTGC+AGG - chr1.1:18383767-18383786 MS.gene026453:CDS 20.0%
! ATAAGATTTCATTTGCATAG+AGG + chr1.1:18384197-18384216 None:intergenic 25.0%
! TATGTAACATGTGACAATAA+AGG + chr1.1:18383716-18383735 None:intergenic 25.0%
! TTGAAATTTCAACTATGTTG+AGG + chr1.1:18385624-18385643 None:intergenic 25.0%
!! ATATTGTTGATTAATTGCAG+TGG - chr1.1:18385873-18385892 MS.gene026453:CDS 25.0%
!! GTCTTATTCAAAAGCTTATA+TGG + chr1.1:18385482-18385501 None:intergenic 25.0%
!! TATTGTTGATTAATTGCAGT+GGG - chr1.1:18385874-18385893 MS.gene026453:CDS 25.0%
!! TTGTGTTATTGTTTGCAAAA+TGG + chr1.1:18385748-18385767 None:intergenic 25.0%
!!! AAAGAAAGTGTTAAAAAGAG+TGG - chr1.1:18384400-18384419 MS.gene026453:intron 25.0%
!!! ACACCTATTATTTTATTCGA+TGG + chr1.1:18384379-18384398 None:intergenic 25.0%
!!! AGTCTAAAGTGTTTTTGAAT+TGG + chr1.1:18385801-18385820 None:intergenic 25.0%
!!! CTCTTTGAAACATACTTTAA+TGG + chr1.1:18383918-18383937 None:intergenic 25.0%
!!! GAAGTGCCTTTTAAATTTAA+AGG + chr1.1:18384433-18384452 None:intergenic 25.0%
!!! GTGTTTTTTGAGGTTTTATA+GGG - chr1.1:18385129-18385148 MS.gene026453:intron 25.0%
!!! GTTTTCTAGAAAGAAAAAAG+GGG + chr1.1:18384031-18384050 None:intergenic 25.0%
!!! TGTGTTTTTTGAGGTTTTAT+AGG - chr1.1:18385128-18385147 MS.gene026453:intron 25.0%
!!! TTTTCTAGAAAGAAAAAAGG+GGG + chr1.1:18384030-18384049 None:intergenic 25.0%
AAAAAAGAAACAGCGATTTG+GGG + chr1.1:18385552-18385571 None:intergenic 30.0%
ACATCAGACAGAAACTAATT+TGG - chr1.1:18386057-18386076 MS.gene026453:CDS 30.0%
AGAAAAAAGAAACAGCGATT+TGG + chr1.1:18385554-18385573 None:intergenic 30.0%
AGCTTATATGGAAAACTACA+TGG + chr1.1:18385470-18385489 None:intergenic 30.0%
CACTTCATATAAACATACAC+CGG + chr1.1:18384251-18384270 None:intergenic 30.0%
GAAAAAAGAAACAGCGATTT+GGG + chr1.1:18385553-18385572 None:intergenic 30.0%
GGTCTTTCAATTCTATTGTT+TGG - chr1.1:18386091-18386110 MS.gene026453:CDS 30.0%
GGTTGTTTACAGAAAATTGA+AGG - chr1.1:18385251-18385270 MS.gene026453:intron 30.0%
TCTAAACACTAGAAATGTCA+TGG + chr1.1:18384583-18384602 None:intergenic 30.0%
TCTCAATTTATTCATGGGTT+TGG - chr1.1:18384764-18384783 MS.gene026453:CDS 30.0%
TGAATATATCTCTCTTCACA+TGG + chr1.1:18384455-18384474 None:intergenic 30.0%
! TATAGGGTTTTCATGCAATT+CGG - chr1.1:18385145-18385164 MS.gene026453:intron 30.0%
! TCTAAAATCCAAACTGCATA+GGG - chr1.1:18385170-18385189 MS.gene026453:intron 30.0%
! TTGATTGTTATCTTGGGTTT+TGG - chr1.1:18385519-18385538 MS.gene026453:intron 30.0%
! TTTCTAGAAAGAAAAAAGGG+GGG + chr1.1:18384029-18384048 None:intergenic 30.0%
!! ACAGAAAATTGAAGGTGTTT+AGG - chr1.1:18385259-18385278 MS.gene026453:intron 30.0%
!! CACTTGATTGCTATTGTTTT+TGG - chr1.1:18384871-18384890 MS.gene026453:CDS 30.0%
!! TTCTAAAATCCAAACTGCAT+AGG - chr1.1:18385169-18385188 MS.gene026453:intron 30.0%
!!! TGTCATGGACACATTTTTTA+TGG + chr1.1:18384568-18384587 None:intergenic 30.0%
!!! TTTTGGATTGGTTACATTCT+TGG - chr1.1:18385898-18385917 MS.gene026453:intron 30.0%
AAACATACACTTAGTAGTCG+TGG - chr1.1:18384718-18384737 MS.gene026453:CDS 35.0%
AAATGATATGTGGTGGTTTG+AGG - chr1.1:18385598-18385617 MS.gene026453:intron 35.0%
AATATATCATGCATGAACGC+TGG + chr1.1:18385829-18385848 None:intergenic 35.0%
AGCTATTATGGCATTCCAAA+CGG - chr1.1:18384804-18384823 MS.gene026453:CDS 35.0%
AGGCTTAGGAACATCATTAA+AGG + chr1.1:18383798-18383817 None:intergenic 35.0%
AGGGTTATGCAAATGATATG+TGG - chr1.1:18385588-18385607 MS.gene026453:intron 35.0%
ATCTTTACAGTCTTCATGGA+TGG - chr1.1:18384947-18384966 MS.gene026453:intron 35.0%
CAATATGTGCTGCATTAACA+GGG - chr1.1:18385999-18386018 MS.gene026453:intron 35.0%
CCAAACAAGTATGAGTATGA+AGG + chr1.1:18383605-18383624 None:intergenic 35.0%
CCTTCATACTCATACTTGTT+TGG - chr1.1:18383602-18383621 MS.gene026453:CDS 35.0%
GCGGAATATTTAGCATATCA+TGG + chr1.1:18384927-18384946 None:intergenic 35.0%
GGCTTAGGAACATCATTAAA+GGG + chr1.1:18383797-18383816 None:intergenic 35.0%
GTTATGCAAATGATATGTGG+TGG - chr1.1:18385591-18385610 MS.gene026453:intron 35.0%
TAGAATTGAAAGACCAGTGA+AGG + chr1.1:18386086-18386105 None:intergenic 35.0%
TAGATTAACGGTGACTTTGA+AGG + chr1.1:18384699-18384718 None:intergenic 35.0%
TATGGTCGAAATCATCTCAA+TGG + chr1.1:18384550-18384569 None:intergenic 35.0%
TCTCAATGGACACTTTCATT+TGG + chr1.1:18384536-18384555 None:intergenic 35.0%
! CACTCTTTTACTCATCATCT+TGG - chr1.1:18385438-18385457 MS.gene026453:intron 35.0%
! TATCAGGAAGCTTGTTCATA+TGG - chr1.1:18384843-18384862 MS.gene026453:CDS 35.0%
!! GATTAATTGCAGTGGGTTTT+TGG - chr1.1:18385881-18385900 MS.gene026453:CDS 35.0%
!!! GCTATTGTTTTTGGCATAGT+TGG - chr1.1:18384880-18384899 MS.gene026453:intron 35.0%
ACTAATTTGGTCACCTTCAC+TGG - chr1.1:18386070-18386089 MS.gene026453:CDS 40.0%
AGCCAAACCTGACATTACAA+TGG + chr1.1:18383563-18383582 None:intergenic 40.0%
ATTGTCACCTTCTGCTTGTT+TGG - chr1.1:18384976-18384995 MS.gene026453:intron 40.0%
CAGCAAGGAAAATAAGGCTT+AGG + chr1.1:18383812-18383831 None:intergenic 40.0%
CCATGAAGACTGTAAAGATG+CGG + chr1.1:18384946-18384965 None:intergenic 40.0%
CTTCACCAGCAAGGAAAATA+AGG + chr1.1:18383818-18383837 None:intergenic 40.0%
CTTCCTGATATGTCTTTGTG+CGG + chr1.1:18384833-18384852 None:intergenic 40.0%
GCAATATGTGCTGCATTAAC+AGG - chr1.1:18385998-18386017 MS.gene026453:intron 40.0%
TACAGTCTTCATGGATGGAT+TGG - chr1.1:18384952-18384971 MS.gene026453:intron 40.0%
TAGTAAGATATGACTCCGAG+AGG + chr1.1:18383861-18383880 None:intergenic 40.0%
TGCCATTGTAATGTCAGGTT+TGG - chr1.1:18383558-18383577 MS.gene026453:CDS 40.0%
TTCCTGATATGTCTTTGTGC+GGG + chr1.1:18384832-18384851 None:intergenic 40.0%
TTGGTTACATTCTTGGTTCC+TGG - chr1.1:18385905-18385924 MS.gene026453:intron 40.0%
TTTGTCCCATGTGAACTAAC+CGG - chr1.1:18384229-18384248 MS.gene026453:intron 40.0%
! ACGGTGACTTTGAAGGAAAT+AGG + chr1.1:18384692-18384711 None:intergenic 40.0%
! ATACACCGGTTAGTTCACAT+GGG + chr1.1:18384237-18384256 None:intergenic 40.0%
! ATGAGTGCCATTGTAATGTC+AGG - chr1.1:18383553-18383572 MS.gene026453:CDS 40.0%
! CGGTGACTTTGAAGGAAATA+GGG + chr1.1:18384691-18384710 None:intergenic 40.0%
! GGTTGTTACATTTTCGCGAA+GGG - chr1.1:18383623-18383642 MS.gene026453:CDS 40.0%
! TCAGGTTTGGCTCATTTGTT+TGG - chr1.1:18383571-18383590 MS.gene026453:CDS 40.0%
! TGGTTGTTACATTTTCGCGA+AGG - chr1.1:18383622-18383641 MS.gene026453:CDS 40.0%
!! ATTAACAGGGTTGATGGAGA+AGG - chr1.1:18386012-18386031 MS.gene026453:intron 40.0%
!! ATTGCAGTGGGTTTTTGGAT+TGG - chr1.1:18385886-18385905 MS.gene026453:CDS 40.0%
!! CTTATTTTCCTTGCTGGTGA+AGG - chr1.1:18383816-18383835 MS.gene026453:intron 40.0%
!!! CTAAGCCTTATTTTCCTTGC+TGG - chr1.1:18383810-18383829 MS.gene026453:intron 40.0%
ATATAAGTCCCACCGCTTCT+TGG - chr1.1:18384317-18384336 MS.gene026453:intron 45.0%
ATTGACTATGCTTCCGTGGA+TGG - chr1.1:18383646-18383665 MS.gene026453:CDS 45.0%
CCGCATCTTTACAGTCTTCA+TGG - chr1.1:18384943-18384962 MS.gene026453:intron 45.0%
CTGCAAACCAAACAAGCAGA+AGG + chr1.1:18384986-18385005 None:intergenic 45.0%
GAAATGGATCACCCAAGAAG+CGG + chr1.1:18384332-18384351 None:intergenic 45.0%
TAAGATATGACTCCGAGAGG+AGG + chr1.1:18383858-18383877 None:intergenic 45.0%
TACCCGCACAAAGACATATC+AGG - chr1.1:18384827-18384846 MS.gene026453:CDS 45.0%
TATAAGTCCCACCGCTTCTT+GGG - chr1.1:18384318-18384337 MS.gene026453:intron 45.0%
TGCATATACCTTCACCAGCA+AGG + chr1.1:18383827-18383846 None:intergenic 45.0%
TGCTGCATTAACAGGGTTGA+TGG - chr1.1:18386006-18386025 MS.gene026453:intron 45.0%
TTACCACCAACTTTGTGCCA+TGG + chr1.1:18385962-18385981 None:intergenic 45.0%
! CATACACCGGTTAGTTCACA+TGG + chr1.1:18384238-18384257 None:intergenic 45.0%
!! AGGCTGGTTTCTTGAAACTG+AGG - chr1.1:18386032-18386051 MS.gene026453:CDS 45.0%
!! CTTCTGCTTGTTTGGTTTGC+AGG - chr1.1:18384984-18385003 MS.gene026453:intron 45.0%
!! GGCTGGTTTCTTGAAACTGA+GGG - chr1.1:18386033-18386052 MS.gene026453:CDS 45.0%
!! ATTAAAATAATTAATATACA+TGG - chr1.1:18384126-18384145 MS.gene026453:intron 5.0%
!! TTTCTTTATTAAATTTATTA+GGG - chr1.1:18385569-18385588 MS.gene026453:intron 5.0%
!!! TTTTCTTTATTAAATTTATT+AGG - chr1.1:18385568-18385587 MS.gene026453:intron 5.0%
AGGGATTGACTATGCTTCCG+TGG - chr1.1:18383642-18383661 MS.gene026453:CDS 50.0%
CTTCCATGGCACAAAGTTGG+TGG - chr1.1:18385956-18385975 MS.gene026453:intron 50.0%
CTTGTTGCATCTTGTGCTCC+AGG + chr1.1:18385926-18385945 None:intergenic 50.0%
GAAGACGCGAAATCCATCCA+CGG + chr1.1:18383662-18383681 None:intergenic 50.0%
GCGTGAGAAGCTCATATGGT+AGG - chr1.1:18385194-18385213 MS.gene026453:intron 50.0%
GGGCACGCGAGAAACTTATA+GGG + chr1.1:18385077-18385096 None:intergenic 50.0%
GTGCTTCCATGGCACAAAGT+TGG - chr1.1:18385953-18385972 MS.gene026453:intron 50.0%
TGGGCACGCGAGAAACTTAT+AGG + chr1.1:18385078-18385097 None:intergenic 50.0%
! CAAGAGCTAGAGTGCTTCCA+TGG - chr1.1:18385942-18385961 MS.gene026453:intron 50.0%
ATGGATCACCCAAGAAGCGG+TGG + chr1.1:18384329-18384348 None:intergenic 55.0%
TGCACTGCACTTCCTCCTCT+CGG - chr1.1:18383843-18383862 MS.gene026453:intron 55.0%
TGGATCACCCAAGAAGCGGT+GGG + chr1.1:18384328-18384347 None:intergenic 55.0%
! GTCTTTGTGCGGGTACCGTT+TGG + chr1.1:18384822-18384841 None:intergenic 55.0%
!! ACAGGGTTGATGGAGAAGGC+TGG - chr1.1:18386016-18386035 MS.gene026453:CDS 55.0%
CTCACGCGCCCTATGCAGTT+TGG + chr1.1:18385181-18385200 None:intergenic 60.0%
GGGCGCGTGAGAAGCTCATA+TGG - chr1.1:18385190-18385209 MS.gene026453:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 18383553 18386147 18383553 ID=MS.gene026453
chr1.1 mRNA 18383553 18386147 18383553 ID=MS.gene026453.t1;Parent=MS.gene026453
chr1.1 exon 18386016 18386147 18386016 ID=MS.gene026453.t1.exon1;Parent=MS.gene026453.t1
chr1.1 CDS 18386016 18386147 18386016 ID=cds.MS.gene026453.t1;Parent=MS.gene026453.t1
chr1.1 exon 18385863 18385911 18385863 ID=MS.gene026453.t1.exon2;Parent=MS.gene026453.t1
chr1.1 CDS 18385863 18385911 18385863 ID=cds.MS.gene026453.t1;Parent=MS.gene026453.t1
chr1.1 exon 18384695 18384894 18384695 ID=MS.gene026453.t1.exon3;Parent=MS.gene026453.t1
chr1.1 CDS 18384695 18384894 18384695 ID=cds.MS.gene026453.t1;Parent=MS.gene026453.t1
chr1.1 exon 18383553 18383807 18383553 ID=MS.gene026453.t1.exon4;Parent=MS.gene026453.t1
chr1.1 CDS 18383553 18383807 18383553 ID=cds.MS.gene026453.t1;Parent=MS.gene026453.t1
Gene Sequence

>MS.gene026453

ATGAGTGCCATTGTAATGTCAGGTTTGGCTCATTTGTTTGGAATCTTGTCCTTCATACTCATACTTGTTTGGTTGTTACATTTTCGCGAAGGGATTGACTATGCTTCCGTGGATGGATTTCGCGTCTTCAATGTAAATTAATTTCATGTTTTTTTGAATTCCTTTATTGTCACATGTTACATAATCTATGATGTAAAACTTGCGTTTATTTATCTTTAATGTTTTATTGTTTGCAGGTACACCCTTTAATGATGTTCCTAAGCCTTATTTTCCTTGCTGGTGAAGGTATATGCACTGCACTTCCTCCTCTCGGAGTCATATCTTACTAGAATGCTAGTTATCTACATCATGATATATACACACCATTAAAGTATGTTTCAAAGAGTTATTTTTTTAATAGTTTATTTAGACTTTATCTTATGACATAAACACTTTATCAAGTATCAAGAGCTAATAAAAATAATTACACATATCCCCCCTTTTTTCTTTCTAGAAAACAATTACACATAGCGCTTATATTCAATAAGCCCTTAATTAAATTGATTTTCTAAAAACAATGTGAATTTATGATTTATTAAAATAATTAATATACATGGTCGTTTTTAACTTTAGACATTGCACTTATGCAAGAATTACTATATCCTCTATGCAAATGAAATCTTATATTTAGCATTATTTTGTCCCATGTGAACTAACCGGTGTATGTTTATATGAAGTGCTCAAAAGACTATTTTTAACCCTCAATCTTTTATTGAATAAAATTAATATAAGTCCCACCGCTTCTTGGGTGATCCATTTCTAAAGTATAAAACTCACATTAATTCCATCGAATAAAATAATAGGTGTTAAAGAAAGTGTTAAAAAGAGTGGTTGAGATCCTTTAAATTTAAAAGGCACTTCCATGTGAAGAGAGATATATTCATAAAATAAAATAATAATATTTTAAAAATAATATTATTTATATATGAATTTATCTCTCTCCAAATGAAAGTGTCCATTGAGATGATTTCGACCATAAAAAATGTGTCCATGACATTTCTAGTGTTTAGATTGATGATGAGTTTGATAGAATAAAAGTTCACCTTACGATTTTAGTAAAAGTTACATTTTGCAATTTCAACGAAACACAATGTCACCCTATTTCCTTCAAAGTCACCGTTAATCTAAACATACACTTAGTAGTCGTGGTGTTGTCTTGAAAAACAAATATATCTCAATTTATTCATGGGTTTGGTTTTGTTAAAATTTAACAGCTATTATGGCATTCCAAACGGTACCCGCACAAAGACATATCAGGAAGCTTGTTCATATGGCACTACACTTGATTGCTATTGTTTTTGGCATAGTTGGTTTGTGTGCAGTTTTCAAGTTCCATGATATGCTAAATATTCCGCATCTTTACAGTCTTCATGGATGGATTGGTATTGTCACCTTCTGCTTGTTTGGTTTGCAGGTATACTTCATATCAATCATATATAAATGCTTTTTTAGGTAAAAATAGTTTGGTCGTTACTTTTTTCACCCTATAAGTTTCTCGCGTGCCCAATTTAAATTCTAAAATTTGAAATATTTCAATGTGTTTTTTGAGGTTTTATAGGGTTTTCATGCAATTCGGATTCTAAAATCCAAACTGCATAGGGCGCGTGAGAAGCTCATATGGTAGGAAAAAAAACAATCAAATAGTTTTAGGATATGTTCGGTTGTTTACAGAAAATTGAAGGTGTTTAGGCTTTATTTTGATAAATAGCTTATCTCACAATTTCTTATCATGATAAAAACATATGTATACGATGTTTTTATAGTAAGAGAAAAAATAAAGTGAAATTGTTTTTTTATAAGCTATAAACTGTTTTCATAAGTATTGTTGCTTACTTGCTTTGCACGACACTCTTTTACTCATCATCTTGGTTTATTCCATGTAGTTTTCCATATAAGCTTTTGAATAAGACGGTTGTTGCATAATATCTTGATTGTTATCTTGGGTTTTGGTCTAGTTCCCCAAATCGCTGTTTCTTTTTTCTTTATTAAATTTATTAGGGTTATGCAAATGATATGTGGTGGTTTGAGGCCTCAACATAGTTGAAATTTCAATAATATCACATGATGCTTTTGCACTATAATTTTGACTTAAAAAAACTATCATTATCTTGGAGAACTAATAAGCTCAAATCAACTTATGAATTATGTCATAACCATTTTGCAAACAATAACACAAAATTTATGTCAGTAGATAAACTCAAATAAGCCAATTCAAAAACACTTTAGACTATTTTCCAGCGTTCATGCATGATATATTGACTTTAATAATAGGTTGAAGTTCATATTGTTGATTAATTGCAGTGGGTTTTTGGATTGGTTACATTCTTGGTTCCTGGAGCACAAGATGCAACAAGAGCTAGAGTGCTTCCATGGCACAAAGTTGGTGGTAAAGTACTATTTTTTATGGCAATATGTGCTGCATTAACAGGGTTGATGGAGAAGGCTGGTTTCTTGAAACTGAGGGCACATCAGACAGAAACTAATTTGGTCACCTTCACTGGTCTTTCAATTCTATTGTTTGGTGTTTTTGTCTACGTGTCTATTAGTGTTCGTTAA
Protein sequence

>MS.gene026453.t1

MSAIVMSGLAHLFGILSFILILVWLLHFREGIDYASVDGFRVFNVHPLMMFLSLIFLAGEAIMAFQTVPAQRHIRKLVHMALHLIAIVFGIVGLCAVFKFHDMLNIPHLYSLHGWIGIVTFCLFGLQWVFGLVTFLVPGAQDATRARVLPWHKVGGKVLFFMAICAALTGLMEKAGFLKLRAHQTETNLVTFTGLSILLFGVFVYVSISVR