Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78729.t1 | XP_003614405.1 | 97.5 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 1.10E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78729.t1 | Q9C540 | 64.0 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 7.4e-79 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78729.t1 | G7JX23 | 97.5 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 8.0e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene78729 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene78729 | 0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene049887 | MS.gene78729 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene78729 | 0.807842 | 4.15E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene78729 | 0.838124 | 3.46E-57 | -1.69E-46 |
| MS.gene050901 | MS.gene78729 | 0.807633 | 4.59E-50 | -1.69E-46 |
| MS.gene051018 | MS.gene78729 | 0.819808 | 9.56E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene78729 | 0.808139 | 3.59E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene78729 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene78729 | 0.80775 | 4.34E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene78729 | 0.850702 | 1.43E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene78729 | 0.854029 | 1.62E-61 | -1.69E-46 |
| MS.gene052516 | MS.gene78729 | 0.819021 | 1.45E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene78729 | 0.81994 | 8.92E-53 | -1.69E-46 |
| MS.gene052732 | MS.gene78729 | 0.805965 | 1.03E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene78729 | 0.874977 | 4.43E-68 | -1.69E-46 |
| MS.gene053174 | MS.gene78729 | 0.829901 | 3.97E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene78729 | 0.831108 | 2.01E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene78729 | 0.812462 | 4.19E-51 | -1.69E-46 |
| MS.gene054550 | MS.gene78729 | 0.817189 | 3.75E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene78729 | 0.863897 | 1.79E-64 | -1.69E-46 |
| MS.gene055465 | MS.gene78729 | 0.827807 | 1.28E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene78729 | 0.836928 | 7.02E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene78729 | 0.834863 | 2.34E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene78729 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene78729 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene78729 | -0.854656 | 1.06E-61 | -1.69E-46 |
| MS.gene055891 | MS.gene78729 | 0.815499 | 8.96E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene78729 | 0.832365 | 9.86E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene78729 | -0.838152 | 3.41E-57 | -1.69E-46 |
| MS.gene056545 | MS.gene78729 | 0.811741 | 6.01E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene78729 | 0.814293 | 1.66E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene78729 | 0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene78729 | 0.819664 | 1.03E-52 | -1.69E-46 |
| MS.gene060194 | MS.gene78729 | 0.801264 | 9.77E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene78729 | 0.821581 | 3.74E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene78729 | 0.821837 | 3.26E-53 | -1.69E-46 |
| MS.gene060884 | MS.gene78729 | 0.806755 | 7.05E-50 | -1.69E-46 |
| MS.gene060886 | MS.gene78729 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene061176 | MS.gene78729 | 0.807281 | 5.46E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene78729 | 0.807179 | 5.74E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene78729 | 0.807052 | 6.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene028170 | PPI |
| MS.gene78729 | MS.gene08339 | PPI |
| MS.gene78729 | MS.gene95367 | PPI |
| MS.gene78729 | MS.gene34953 | PPI |
| MS.gene78729 | MS.gene95258 | PPI |
| MS.gene78729 | MS.gene82994 | PPI |
| MS.gene040901 | MS.gene78729 | PPI |
| MS.gene78729 | MS.gene026453 | PPI |
| MS.gene023278 | MS.gene78729 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78729.t1 | MTR_5g053250 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 2.23e-171 | 472 |
| MS.gene78729.t1 | MTR_5g053250 | 87.687 | 268 | 6 | 1 | 2 | 242 | 4 | 271 | 2.86e-165 | 457 |
| MS.gene78729.t1 | MTR_5g053250 | 97.826 | 184 | 4 | 0 | 59 | 242 | 1 | 184 | 7.74e-130 | 364 |
| MS.gene78729.t1 | MTR_6g017105 | 44.934 | 227 | 120 | 3 | 1 | 226 | 1 | 223 | 2.91e-60 | 190 |
| MS.gene78729.t1 | MTR_1g100643 | 41.071 | 224 | 123 | 5 | 1 | 222 | 1 | 217 | 3.19e-47 | 156 |
| MS.gene78729.t1 | MTR_1g033360 | 39.151 | 212 | 117 | 4 | 15 | 224 | 16 | 217 | 2.32e-42 | 143 |
| MS.gene78729.t1 | MTR_1g100643 | 43.636 | 165 | 91 | 2 | 59 | 222 | 1 | 164 | 1.00e-39 | 135 |
| MS.gene78729.t1 | MTR_1g033390 | 33.333 | 207 | 129 | 5 | 14 | 219 | 9 | 207 | 1.81e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78729.t1 | AT1G26100 | 63.968 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 8.48e-98 | 285 |
| MS.gene78729.t1 | AT5G38630 | 46.222 | 225 | 109 | 6 | 10 | 228 | 10 | 228 | 2.68e-62 | 195 |
| MS.gene78729.t1 | AT4G25570 | 39.437 | 213 | 123 | 4 | 9 | 220 | 8 | 215 | 2.62e-44 | 149 |
| MS.gene78729.t1 | AT4G25570 | 39.437 | 213 | 123 | 4 | 9 | 220 | 49 | 256 | 1.27e-43 | 149 |
| MS.gene78729.t1 | AT1G14730 | 30.698 | 215 | 137 | 4 | 14 | 226 | 20 | 224 | 1.99e-23 | 94.7 |
Find 61 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5.4:+42289010 | MS.gene78729:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5.4:+42288570 | MS.gene78729:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | 5.4:+42291518 | MS.gene78729:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5.4:+42289001 | MS.gene78729:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5.4:+42288922 | MS.gene78729:intron |
| TTGATTTGTGTATCACTCTT+TGG | 0.246496 | 5.4:+42289103 | MS.gene78729:CDS |
| TAATAGGCTTCTTGAACTTT+TGG | 0.266466 | 5.4:+42291295 | MS.gene78729:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5.4:+42289011 | MS.gene78729:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | 5.4:+42291354 | MS.gene78729:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5.4:+42289017 | MS.gene78729:CDS |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5.4:-42288626 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5.4:+42289074 | MS.gene78729:CDS |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5.4:+42289002 | MS.gene78729:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5.4:+42288571 | MS.gene78729:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5.4:-42288789 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5.4:-42289048 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5.4:+42291480 | MS.gene78729:CDS |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5.4:+42288760 | MS.gene78729:CDS |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | 5.4:+42291396 | MS.gene78729:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | 5.4:+42291504 | MS.gene78729:CDS |
| GTTGTAAATTCTTTAGGCTT+AGG | 0.366014 | 5.4:+42291486 | MS.gene78729:CDS |
| ATTGTATTGCAGTGGCTAAT+AGG | 0.375849 | 5.4:+42291279 | MS.gene78729:intron |
| CCTAAGTATCAAATTCTTCA+AGG | 0.384117 | 5.4:+42291552 | MS.gene78729:CDS |
| CCTTGAAGAATTTGATACTT+AGG | 0.393626 | 5.4:-42291552 | None:intergenic |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5.4:+42288625 | MS.gene78729:CDS |
| TGTATCACTCTTTGGAGCTC+AGG | 0.406685 | 5.4:+42289111 | MS.gene78729:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5.4:+42288949 | MS.gene78729:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5.4:-42291377 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | 5.4:+42291328 | MS.gene78729:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5.4:+42289040 | MS.gene78729:CDS |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5.4:+42289079 | MS.gene78729:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5.4:-42291463 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5.4:+42288948 | MS.gene78729:CDS |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5.4:-42288616 | None:intergenic |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5.4:+42288983 | MS.gene78729:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5.4:+42288941 | MS.gene78729:CDS |
| AAAAGCAAAGGGAGTAGTGA+GGG | 0.473857 | 5.4:-42288521 | None:intergenic |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5.4:+42288753 | MS.gene78729:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5.4:+42289078 | MS.gene78729:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5.4:+42288950 | MS.gene78729:CDS |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | 5.4:-42291518 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5.4:+42288984 | MS.gene78729:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | 5.4:-42291320 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5.4:+42291464 | MS.gene78729:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5.4:+42289041 | MS.gene78729:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5.4:+42289048 | MS.gene78729:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5.4:-42289084 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5.4:+42288988 | MS.gene78729:CDS |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5.4:+42291374 | MS.gene78729:CDS |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | 5.4:-42291357 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | 5.4:+42291386 | MS.gene78729:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5.4:+42288942 | MS.gene78729:CDS |
| GCCTAAAGAATTTACAACCA+TGG | 0.590393 | 5.4:-42291481 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5.4:-42288763 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5.4:-42288759 | None:intergenic |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5.4:+42288951 | MS.gene78729:CDS |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5.4:+42288985 | MS.gene78729:CDS |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5.4:-42288638 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5.4:-42288510 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | 5.4:+42291340 | MS.gene78729:CDS |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | 5.4:+42291322 | MS.gene78729:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTAAATAAATATTA+AGG | + | chr5.4:42289322-42289341 | MS.gene78729:intron | 0.0% |
| !! | TTAACTATTAATTTAAGAAT+TGG | + | chr5.4:42291021-42291040 | MS.gene78729:intron | 10.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5.4:42288694-42288713 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5.4:42288695-42288714 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTGAAATTTTTT+TGG | + | chr5.4:42289905-42289924 | MS.gene78729:intron | 10.0% |
| !!! | AAATTTTAAATGAAATTGAA+AGG | - | chr5.4:42290407-42290426 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5.4:42288732-42288751 | MS.gene78729:intron | 10.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr5.4:42290081-42290100 | MS.gene78729:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr5.4:42289707-42289726 | None:intergenic | 15.0% |
| !!! | TCTAAGATTAATTTTTACTT+GGG | + | chr5.4:42289180-42289199 | MS.gene78729:intron | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+AGG | + | chr5.4:42290021-42290040 | MS.gene78729:intron | 15.0% |
| !!! | TTCTAAGATTAATTTTTACT+TGG | + | chr5.4:42289179-42289198 | MS.gene78729:intron | 15.0% |
| !! | AAAAAATTTGAACAAAAGAG+GGG | + | chr5.4:42290516-42290535 | MS.gene78729:intron | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5.4:42288832-42288851 | MS.gene78729:intron | 20.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5.4:42288825-42288844 | MS.gene78729:intron | 20.0% |
| !! | AATATTTATTCGATCCATAT+GGG | - | chr5.4:42290248-42290267 | None:intergenic | 20.0% |
| !! | AATCGTGAAATTAAAAAGAA+TGG | - | chr5.4:42290124-42290143 | None:intergenic | 20.0% |
| !! | AATTCTATTATTATCCCATA+TGG | + | chr5.4:42290231-42290250 | MS.gene78729:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5.4:42288826-42288845 | MS.gene78729:intron | 20.0% |
| !! | CAAAAAATTTGAACAAAAGA+GGG | + | chr5.4:42290515-42290534 | MS.gene78729:intron | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr5.4:42290080-42290099 | MS.gene78729:intron | 20.0% |
| !! | CTCAAATAATGATAACTAAT+TGG | - | chr5.4:42290644-42290663 | None:intergenic | 20.0% |
| !! | CTTATGCAAATTTATTAGTT+AGG | - | chr5.4:42290618-42290637 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr5.4:42289647-42289666 | None:intergenic | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5.4:42288865-42288884 | MS.gene78729:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr5.4:42290017-42290036 | None:intergenic | 20.0% |
| !!! | AATTTTATTTCCTGATGAAT+AGG | - | chr5.4:42289309-42289328 | None:intergenic | 20.0% |
| !!! | AGAATGGTTAAATATGTTTT+TGG | - | chr5.4:42290108-42290127 | None:intergenic | 20.0% |
| !!! | ATACTTTCATGTTCTTTTTA+GGG | + | chr5.4:42289604-42289623 | MS.gene78729:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr5.4:42289989-42290008 | MS.gene78729:intron | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5.4:42288831-42288850 | None:intergenic | 20.0% |
| !!! | ATTCACAAATTAAGCTATTT+TGG | + | chr5.4:42290684-42290703 | MS.gene78729:intron | 20.0% |
| !!! | ATTTTGTATTTTCCTTCTTT+GGG | - | chr5.4:42289542-42289561 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr5.4:42289708-42289727 | None:intergenic | 20.0% |
| !!! | GTGTATAGATATTTTATGTA+TGG | + | chr5.4:42291211-42291230 | MS.gene78729:intron | 20.0% |
| !!! | TAAAAAGAACATGAAAGTAT+AGG | - | chr5.4:42289604-42289623 | None:intergenic | 20.0% |
| !!! | TAGTGTATACATAATCTTTT+GGG | + | chr5.4:42291178-42291197 | MS.gene78729:intron | 20.0% |
| !!! | TATACTTTCATGTTCTTTTT+AGG | + | chr5.4:42289603-42289622 | MS.gene78729:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr5.4:42289990-42290009 | MS.gene78729:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5.4:42288830-42288849 | None:intergenic | 20.0% |
| !!! | TTAGCTTATGAAATGATTTT+TGG | + | chr5.4:42289381-42289400 | MS.gene78729:intron | 20.0% |
| !!! | TTAGTGTATACATAATCTTT+TGG | + | chr5.4:42291177-42291196 | MS.gene78729:intron | 20.0% |
| !!! | TTGTCAAAAGTTTTTCAATT+AGG | + | chr5.4:42290286-42290305 | MS.gene78729:intron | 20.0% |
| ! | AACTCTCTATTTCATACAAA+TGG | - | chr5.4:42290741-42290760 | None:intergenic | 25.0% |
| ! | AATATGCACTAAATATGTGA+TGG | + | chr5.4:42289435-42289454 | MS.gene78729:intron | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5.4:42289040-42289059 | MS.gene78729:CDS | 25.0% |
| ! | ATCATAAGAGAAAATATACG+AGG | - | chr5.4:42290375-42290394 | None:intergenic | 25.0% |
| ! | ATGCAAATTTATTAGTTAGG+AGG | - | chr5.4:42290615-42290634 | None:intergenic | 25.0% |
| ! | ATTGTACTAACTAGCTAAAT+TGG | - | chr5.4:42289497-42289516 | None:intergenic | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5.4:42289041-42289060 | MS.gene78729:CDS | 25.0% |
| ! | CAATATTTATTCGATCCATA+TGG | - | chr5.4:42290249-42290268 | None:intergenic | 25.0% |
| ! | CCAAAAAATTTGAACAAAAG+AGG | + | chr5.4:42290514-42290533 | MS.gene78729:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr5.4:42289648-42289667 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5.4:42291068-42291087 | MS.gene78729:intron | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | + | chr5.4:42290036-42290055 | MS.gene78729:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5.4:42290049-42290068 | MS.gene78729:intron | 25.0% |
| !! | AGTGTATACATAATCTTTTG+GGG | + | chr5.4:42291179-42291198 | MS.gene78729:intron | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5.4:42288778-42288797 | MS.gene78729:CDS | 25.0% |
| !! | CATTTTGTATTTTCCTTCTT+TGG | - | chr5.4:42289543-42289562 | None:intergenic | 25.0% |
| !! | CCTCTTTTGTTCAAATTTTT+TGG | - | chr5.4:42290517-42290536 | None:intergenic | 25.0% |
| !! | TCGTCTTGTTGTAAAAATTT+AGG | + | chr5.4:42289577-42289596 | MS.gene78729:intron | 25.0% |
| !!! | ATTACATTTTTTCTCCTACA+TGG | - | chr5.4:42290570-42290589 | None:intergenic | 25.0% |
| !!! | CAAATTAAGCTATTTTGGTA+CGG | + | chr5.4:42290689-42290708 | MS.gene78729:intron | 25.0% |
| !!! | TCAAAAAGTATTTTCCATGT+AGG | + | chr5.4:42290553-42290572 | MS.gene78729:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5.4:42288677-42288696 | None:intergenic | 30.0% | |
| AACTAGCTAAATTGGAAAGT+AGG | - | chr5.4:42289489-42289508 | None:intergenic | 30.0% | |
| AGATTCTATGAGAGTTAACT+TGG | - | chr5.4:42290470-42290489 | None:intergenic | 30.0% | |
| ATGCATAATATATGCAAGGT+TGG | + | chr5.4:42291072-42291091 | MS.gene78729:intron | 30.0% | |
| CCTAAGTATCAAATTCTTCA+AGG | + | chr5.4:42291552-42291571 | MS.gene78729:CDS | 30.0% | |
| CCTTGAAGAATTTGATACTT+AGG | - | chr5.4:42291555-42291574 | None:intergenic | 30.0% | |
| GTTGTAAATTCTTTAGGCTT+AGG | + | chr5.4:42291486-42291505 | MS.gene78729:CDS | 30.0% | |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5.4:42291480-42291499 | MS.gene78729:CDS | 30.0% | |
| TTCAACATATTGTATTGCAG+TGG | + | chr5.4:42291271-42291290 | MS.gene78729:intron | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | + | chr5.4:42291577-42291596 | MS.gene78729:CDS | 30.0% |
| ! | AGACTCTTTTGTATCAGTTT+TGG | + | chr5.4:42289354-42289373 | MS.gene78729:intron | 30.0% |
| ! | TAATAGGCTTCTTGAACTTT+TGG | + | chr5.4:42291295-42291314 | MS.gene78729:CDS | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | - | chr5.4:42289679-42289698 | None:intergenic | 30.0% |
| !! | AGTCGAAGGAATATTTTAGA+GGG | - | chr5.4:42289678-42289697 | None:intergenic | 30.0% |
| !! | TTGATTTGTGTATCACTCTT+TGG | + | chr5.4:42289103-42289122 | MS.gene78729:CDS | 30.0% |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5.4:42288784-42288803 | MS.gene78729:CDS | 30.0% |
| !!! | AATTTTTTGGCAGTTTTTCG+TGG | - | chr5.4:42290504-42290523 | None:intergenic | 30.0% |
| AACAAAAGAGGGGCAAAAAT+AGG | + | chr5.4:42290526-42290545 | MS.gene78729:intron | 35.0% | |
| AATCCAGACACTACAAAGAT+TGG | + | chr5.4:42291101-42291120 | MS.gene78729:intron | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5.4:42288571-42288590 | MS.gene78729:CDS | 35.0% | |
| ATTGTATTGCAGTGGCTAAT+AGG | + | chr5.4:42291279-42291298 | MS.gene78729:intron | 35.0% | |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5.4:42289074-42289093 | MS.gene78729:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5.4:42291484-42291503 | None:intergenic | 35.0% | |
| TAACCAATCTTTGTAGTGTC+TGG | - | chr5.4:42291107-42291126 | None:intergenic | 35.0% | |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5.4:42288792-42288811 | None:intergenic | 35.0% | |
| TAGAGTTTAACTCAGTTGGT+GGG | + | chr5.4:42291045-42291064 | MS.gene78729:intron | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5.4:42288570-42288589 | MS.gene78729:CDS | 35.0% | |
| TATCTTGACACCTATTCATC+AGG | + | chr5.4:42289296-42289315 | MS.gene78729:intron | 35.0% | |
| TGGTTAGAGTTTAACTCAGT+TGG | + | chr5.4:42291041-42291060 | MS.gene78729:intron | 35.0% | |
| TTACCATGGCATGTATTTCT+TGG | + | chr5.4:42291354-42291373 | MS.gene78729:CDS | 35.0% | |
| TTAGAGTTTAACTCAGTTGG+TGG | + | chr5.4:42291044-42291063 | MS.gene78729:intron | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | - | chr5.4:42289692-42289711 | None:intergenic | 35.0% | |
| TTGGGTCAGAATTCTCTAAT+TGG | - | chr5.4:42289524-42289543 | None:intergenic | 35.0% | |
| TTTGAGTATGCGAGATTATG+CGG | + | chr5.4:42290658-42290677 | MS.gene78729:intron | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5.4:42288922-42288941 | MS.gene78729:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5.4:42289011-42289030 | MS.gene78729:CDS | 35.0% |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5.4:42288619-42288638 | None:intergenic | 35.0% |
| !!! | TTAAGCTATTTTGGTACGGT+TGG | + | chr5.4:42290693-42290712 | MS.gene78729:intron | 35.0% |
| AAAAAGCAAAGGGAGTAGTG+AGG | - | chr5.4:42288525-42288544 | None:intergenic | 40.0% | |
| AAAAGCAAAGGGAGTAGTGA+GGG | - | chr5.4:42288524-42288543 | None:intergenic | 40.0% | |
| AAATGCGAACAGTGAGGATA+AGG | + | chr5.4:42291328-42291347 | MS.gene78729:CDS | 40.0% | |
| AACAAGACGAATGCTTCTGT+TGG | - | chr5.4:42289567-42289586 | None:intergenic | 40.0% | |
| ACAAGACGAATGCTTCTGTT+GGG | - | chr5.4:42289566-42289585 | None:intergenic | 40.0% | |
| ACTCTCGCAAGAAAAAGCAA+AGG | - | chr5.4:42288536-42288555 | None:intergenic | 40.0% | |
| AGAGAATTCTGACCCAAAGA+AGG | + | chr5.4:42289527-42289546 | MS.gene78729:intron | 40.0% | |
| CCACAATCCCATCATTTACT+TGG | - | chr5.4:42289051-42289070 | None:intergenic | 40.0% | |
| CCAGAATAACAAAGCCACTA+AGG | - | chr5.4:42291521-42291540 | None:intergenic | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5.4:42288984-42289003 | MS.gene78729:CDS | 40.0% | |
| CTCTCGCAAGAAAAAGCAAA+GGG | - | chr5.4:42288535-42288554 | None:intergenic | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5.4:42291380-42291399 | None:intergenic | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5.4:42288985-42289004 | MS.gene78729:CDS | 40.0% | |
| TAAATTGGAAAGTAGGTCCG+AGG | - | chr5.4:42289482-42289501 | None:intergenic | 40.0% | |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5.4:42289079-42289098 | MS.gene78729:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5.4:42289087-42289106 | None:intergenic | 40.0% | |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5.4:42288625-42288644 | MS.gene78729:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5.4:42288629-42288648 | None:intergenic | 40.0% | |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5.4:42288983-42289002 | MS.gene78729:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | + | chr5.4:42291340-42291359 | MS.gene78729:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5.4:42291374-42291393 | MS.gene78729:CDS | 40.0% | |
| ! | AGAGTTTAACTCAGTTGGTG+GGG | + | chr5.4:42291046-42291065 | MS.gene78729:intron | 40.0% |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5.4:42289048-42289067 | MS.gene78729:CDS | 40.0% |
| ! | CTTTTTCTTGCGAGAGTTTG+TGG | + | chr5.4:42288539-42288558 | MS.gene78729:CDS | 40.0% |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5.4:42291386-42291405 | MS.gene78729:CDS | 40.0% |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5.4:42288933-42288952 | MS.gene78729:intron | 40.0% |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | + | chr5.4:42291518-42291537 | MS.gene78729:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5.4:42289017-42289036 | MS.gene78729:CDS | 40.0% |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5.4:42289010-42289029 | MS.gene78729:CDS | 40.0% |
| !! | TGAATGATTGATGACGACCT+CGG | + | chr5.4:42289462-42289481 | MS.gene78729:intron | 40.0% |
| AATCCAATGACCATGAGCAC+AGG | - | chr5.4:42288766-42288785 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | - | chr5.4:42291360-42291379 | None:intergenic | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5.4:42289078-42289097 | MS.gene78729:CDS | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5.4:42288641-42288660 | None:intergenic | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5.4:42288988-42289007 | MS.gene78729:CDS | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5.4:42288964-42288983 | MS.gene78729:CDS | 45.0% | |
| TCACTGTTCGCATTTCTCCT+CGG | - | chr5.4:42291323-42291342 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | + | chr5.4:42291504-42291523 | MS.gene78729:CDS | 45.0% | |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5.4:42291303-42291322 | MS.gene78729:CDS | 45.0% |
| !! | TGTATCACTCTTTGGAGCTC+AGG | + | chr5.4:42289111-42289130 | MS.gene78729:CDS | 45.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr5.4:42289739-42289758 | None:intergenic | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr5.4:42289738-42289757 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | - | chr5.4:42289812-42289831 | None:intergenic | 5.0% |
| !!! | TATAATATTTTGAATTTTTT+TGG | + | chr5.4:42289937-42289956 | MS.gene78729:intron | 5.0% |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5.4:42288948-42288967 | MS.gene78729:CDS | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5.4:42288762-42288781 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5.4:42288760-42288779 | MS.gene78729:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5.4:42291466-42291485 | None:intergenic | 50.0% | |
| GAGGAGAAATGCGAACAGTG+AGG | + | chr5.4:42291322-42291341 | MS.gene78729:CDS | 50.0% | |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5.4:42288513-42288532 | None:intergenic | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5.4:42288949-42288968 | MS.gene78729:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5.4:42288942-42288961 | MS.gene78729:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5.4:42288941-42288960 | MS.gene78729:CDS | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5.4:42291464-42291483 | MS.gene78729:CDS | 50.0% |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5.4:42289002-42289021 | MS.gene78729:CDS | 50.0% |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5.4:42288950-42288969 | MS.gene78729:CDS | 55.0% | |
| GCAGTAGCAACGGCTGAAAC+TGG | + | chr5.4:42291396-42291415 | MS.gene78729:CDS | 55.0% | |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5.4:42288753-42288772 | MS.gene78729:intron | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5.4:42288962-42288981 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5.4:42289001-42289020 | MS.gene78729:CDS | 55.0% |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5.4:42288951-42288970 | MS.gene78729:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42288506 | 42291614 | 42288506 | ID=MS.gene78729 |
| chr5.4 | mRNA | 42288506 | 42291614 | 42288506 | ID=MS.gene78729.t1;Parent=MS.gene78729 |
| chr5.4 | exon | 42288506 | 42288661 | 42288506 | ID=MS.gene78729.t1.exon1;Parent=MS.gene78729.t1 |
| chr5.4 | CDS | 42288506 | 42288661 | 42288506 | ID=cds.MS.gene78729.t1;Parent=MS.gene78729.t1 |
| chr5.4 | exon | 42288754 | 42288805 | 42288754 | ID=MS.gene78729.t1.exon2;Parent=MS.gene78729.t1 |
| chr5.4 | CDS | 42288754 | 42288805 | 42288754 | ID=cds.MS.gene78729.t1;Parent=MS.gene78729.t1 |
| chr5.4 | exon | 42288936 | 42289132 | 42288936 | ID=MS.gene78729.t1.exon3;Parent=MS.gene78729.t1 |
| chr5.4 | CDS | 42288936 | 42289132 | 42288936 | ID=cds.MS.gene78729.t1;Parent=MS.gene78729.t1 |
| chr5.4 | exon | 42291291 | 42291614 | 42291291 | ID=MS.gene78729.t1.exon4;Parent=MS.gene78729.t1 |
| chr5.4 | CDS | 42291291 | 42291614 | 42291291 | ID=cds.MS.gene78729.t1;Parent=MS.gene78729.t1 |
| Gene Sequence |
| Protein sequence |
