Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026999.t1 | XP_013459848.1 | 99.1 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 2.50E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026999.t1 | O94903 | 48.0 | 225 | 105 | 7 | 2 | 215 | 9 | 232 | 1.2e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026999.t1 | A0A072UVQ6 | 99.1 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 1.8e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002999 | MS.gene026999 | PPI |
| MS.gene00778 | MS.gene026999 | PPI |
| MS.gene02348 | MS.gene026999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026999.t1 | MTR_3g053230 | 99.070 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 4.25e-161 | 444 |
| MS.gene026999.t1 | MTR_2g024060 | 64.019 | 214 | 77 | 0 | 2 | 215 | 5 | 218 | 4.41e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026999.t1 | AT4G26860 | 76.056 | 213 | 51 | 0 | 3 | 215 | 7 | 219 | 2.80e-123 | 349 |
| MS.gene026999.t1 | AT4G26860 | 72.646 | 223 | 51 | 1 | 3 | 215 | 7 | 229 | 5.25e-120 | 341 |
| MS.gene026999.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 1 | 215 | 16 | 232 | 4.91e-115 | 328 |
| MS.gene026999.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 1 | 215 | 16 | 232 | 6.00e-115 | 328 |
Find 68 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGAAATGGGTTTGGTTT+TGG | 0.202191 | 3.4:+50058900 | None:intergenic |
| CCCTCAACCATGGCCAAATT+TGG | 0.203865 | 3.4:+50057325 | None:intergenic |
| TGTAGGCGGAGTTCCAAATT+TGG | 0.251833 | 3.4:-50057338 | MS.gene026999:intron |
| GAGCTTTCTCAACGATTTCT+TGG | 0.267769 | 3.4:+50058827 | None:intergenic |
| CTCAACTCCGCAGAACTTTC+GGG | 0.271171 | 3.4:-50055770 | MS.gene026999:intron |
| GACGCAGGTCATAGAGTCTT+TGG | 0.284655 | 3.4:-50058862 | MS.gene026999:CDS |
| AAGCATACTCAGAAGTGTTT+TGG | 0.293617 | 3.4:+50057875 | None:intergenic |
| CTTCAGTCCTGCAATTTGAT+AGG | 0.293960 | 3.4:+50055556 | None:intergenic |
| CCTCAACTCCGCAGAACTTT+CGG | 0.295923 | 3.4:-50055771 | MS.gene026999:CDS |
| CGGATCTTTCCGCTGCTTGT+TGG | 0.298445 | 3.4:+50058959 | None:intergenic |
| AAGAAATCGTCTGAGGGTTT+TGG | 0.327681 | 3.4:-50056972 | MS.gene026999:CDS |
| GGAAGGATCAACACCTGATT+TGG | 0.347839 | 3.4:+50055882 | None:intergenic |
| AATATTGTTGCAGCCAAATC+AGG | 0.353422 | 3.4:-50055895 | MS.gene026999:intron |
| GATATCCAGTGGCACTTCAT+TGG | 0.369697 | 3.4:-50057918 | MS.gene026999:CDS |
| AAGCCAGAGAATTCTAAGTT+TGG | 0.370526 | 3.4:+50055820 | None:intergenic |
| TCCAAATTTGGCCATGGTTG+AGG | 0.377384 | 3.4:-50057326 | MS.gene026999:CDS |
| GATCCAAACCCGATCGAGTT+CGG | 0.378479 | 3.4:-50058936 | MS.gene026999:CDS |
| CCAAATTTGGCCATGGTTGA+GGG | 0.387342 | 3.4:-50057325 | MS.gene026999:CDS |
| GACCCGAACTCGATCGGGTT+TGG | 0.389360 | 3.4:+50058933 | None:intergenic |
| ACGCAGGTCATAGAGTCTTT+GGG | 0.391806 | 3.4:-50058861 | MS.gene026999:CDS |
| ATCCAAACCCGATCGAGTTC+GGG | 0.394346 | 3.4:-50058935 | MS.gene026999:CDS |
| CCCTCAGACGATTTCTTCCC+AGG | 0.401232 | 3.4:+50056978 | None:intergenic |
| TGTAGACCCTATCAAATTGC+AGG | 0.402948 | 3.4:-50055563 | MS.gene026999:intron |
| AGTTTGCAAGGCACTTGAAA+TGG | 0.408160 | 3.4:-50055535 | MS.gene026999:CDS |
| TTTGGCCATGGTTGAGGGAG+TGG | 0.425743 | 3.4:-50057320 | MS.gene026999:CDS |
| GAGTTGGCGAATCATAGAAA+TGG | 0.426278 | 3.4:+50058888 | None:intergenic |
| GGAGCAATGTGAACTGTCAA+TGG | 0.426611 | 3.4:-50055508 | MS.gene026999:CDS |
| AACTCGATCGGGTTTGGATC+CGG | 0.434921 | 3.4:+50058939 | None:intergenic |
| TGACCGTATGGTTTCAAACC+TGG | 0.441164 | 3.4:-50056996 | MS.gene026999:CDS |
| GCGAATCATAGAAATGGGTT+TGG | 0.446886 | 3.4:+50058894 | None:intergenic |
| GGCAAATAACCTTGACCGTA+TGG | 0.454246 | 3.4:-50057008 | MS.gene026999:CDS |
| ATATCCAGTGGCACTTCATT+GGG | 0.458508 | 3.4:-50057917 | MS.gene026999:CDS |
| TGTCCAAACTTAGAATTCTC+TGG | 0.463779 | 3.4:-50055823 | MS.gene026999:CDS |
| TTCTCTGGCTTAATGACAAT+AGG | 0.469053 | 3.4:-50055808 | MS.gene026999:CDS |
| AGTTGGCGAATCATAGAAAT+GGG | 0.472698 | 3.4:+50058889 | None:intergenic |
| GAACTGTCAATGGGCATGTC+TGG | 0.485338 | 3.4:-50055498 | MS.gene026999:CDS |
| TTCAGTCCTGCAATTTGATA+GGG | 0.493507 | 3.4:+50055557 | None:intergenic |
| TTTCCGCTGCTTGTTGGACA+CGG | 0.495324 | 3.4:+50058965 | None:intergenic |
| CAACAAGCAGCGGAAAGATC+CGG | 0.499909 | 3.4:-50058958 | MS.gene026999:CDS |
| GCAACGACCCGAACTCGATC+GGG | 0.502938 | 3.4:+50058928 | None:intergenic |
| TGCGGAGTTGAGGTATAGTC+TGG | 0.506981 | 3.4:+50055781 | None:intergenic |
| CGGAGTTCCAAATTTGGCCA+TGG | 0.516134 | 3.4:-50057332 | MS.gene026999:CDS |
| TGCAACGACCCGAACTCGAT+CGG | 0.532215 | 3.4:+50058927 | None:intergenic |
| TTCCCAGGTTTGAAACCATA+CGG | 0.534502 | 3.4:+50056993 | None:intergenic |
| GAACATACATTCTTCTCCAC+TGG | 0.540706 | 3.4:+50056937 | None:intergenic |
| AATCGTTGAGAAAGCTCCTC+AGG | 0.548191 | 3.4:-50058821 | MS.gene026999:intron |
| CCGAAAGTTCTGCGGAGTTG+AGG | 0.549382 | 3.4:+50055771 | None:intergenic |
| GAGCAATGTGAACTGTCAAT+GGG | 0.553747 | 3.4:-50055507 | MS.gene026999:CDS |
| GACCGTATGGTTTCAAACCT+GGG | 0.557992 | 3.4:-50056995 | MS.gene026999:CDS |
| AATGCCCAATGAAGTGCCAC+TGG | 0.571037 | 3.4:+50057913 | None:intergenic |
| CGCAGGTCATAGAGTCTTTG+GGG | 0.571253 | 3.4:-50058860 | MS.gene026999:CDS |
| CAAGGCACTTGAAATGGACG+AGG | 0.572444 | 3.4:-50055529 | MS.gene026999:CDS |
| GGTTTGAAACCATACGGTCA+AGG | 0.578649 | 3.4:+50056999 | None:intergenic |
| TTGCAGGACTGAAGTTTGCA+AGG | 0.579031 | 3.4:-50055547 | MS.gene026999:CDS |
| TACTGATCGGAAAGCTAAGA+CGG | 0.579948 | 3.4:+50058993 | None:intergenic |
| TATGACCTGCGTCATAGAGT+TGG | 0.585309 | 3.4:+50058872 | None:intergenic |
| ATTCGCCAACTCTATGACGC+AGG | 0.587190 | 3.4:-50058877 | MS.gene026999:CDS |
| GCAAGATCAACACAATCGGA+AGG | 0.593111 | 3.4:+50055865 | None:intergenic |
| CCTGGGAAGAAATCGTCTGA+GGG | 0.593514 | 3.4:-50056978 | MS.gene026999:CDS |
| ACCTGGGAAGAAATCGTCTG+AGG | 0.602661 | 3.4:-50056979 | MS.gene026999:CDS |
| ATTGTCCACTCCCTCAACCA+TGG | 0.626574 | 3.4:+50057315 | None:intergenic |
| TGAGGGAGTGGACAATCAGA+AGG | 0.626680 | 3.4:-50057308 | MS.gene026999:intron |
| AAGTGCCACTGGATATCTTG+CGG | 0.630043 | 3.4:+50057924 | None:intergenic |
| GCTCCGTGTCCAACAAGCAG+CGG | 0.649023 | 3.4:-50058968 | MS.gene026999:CDS |
| AGCTTCCGCAAGATATCCAG+TGG | 0.660486 | 3.4:-50057929 | MS.gene026999:CDS |
| GGACACGGAGCATTACTGAT+CGG | 0.662757 | 3.4:+50058980 | None:intergenic |
| TTGGTGCAAGTAAACACCAG+TGG | 0.682384 | 3.4:-50056953 | MS.gene026999:CDS |
| ACTATTACCCGAAAGTTCTG+CGG | 0.684747 | 3.4:+50055763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATAATTATAATTT+AGG | - | chr3.4:50057306-50057325 | MS.gene026999:intron | 0.0% |
| !!! | TTTACAAATAATTTTTAAGT+AGG | - | chr3.4:50056063-50056082 | MS.gene026999:intron | 10.0% |
| !! | AATAGAAAAGTAAAACAATA+TGG | + | chr3.4:50058475-50058494 | None:intergenic | 15.0% |
| !! | ATAACCAAAAAAATATAACA+AGG | + | chr3.4:50057607-50057626 | None:intergenic | 15.0% |
| !! | ATATTGTATTATTGATAGAA+AGG | + | chr3.4:50057968-50057987 | None:intergenic | 15.0% |
| !! | ATCATATAAAGTATAAACAT+CGG | + | chr3.4:50057023-50057042 | None:intergenic | 15.0% |
| !! | TATTGTATTATTGATAGAAA+GGG | + | chr3.4:50057967-50057986 | None:intergenic | 15.0% |
| !! | TTAACAAGTTTATCTATTTA+AGG | + | chr3.4:50058568-50058587 | None:intergenic | 15.0% |
| !!! | AAATCCTTGTTATATTTTTT+TGG | - | chr3.4:50057600-50057619 | MS.gene026999:intron | 15.0% |
| !!! | CATTTATTCTAAGTTATTTT+AGG | + | chr3.4:50056922-50056941 | None:intergenic | 15.0% |
| !!! | TTGTCAATTTCTTAATTTTA+GGG | - | chr3.4:50056359-50056378 | MS.gene026999:intron | 15.0% |
| !!! | TTTACTTTTCTATTATGTAT+TGG | - | chr3.4:50058481-50058500 | MS.gene026999:intron | 15.0% |
| !!! | TTTGTCAATTTCTTAATTTT+AGG | - | chr3.4:50056358-50056377 | MS.gene026999:intron | 15.0% |
| !! | AACATCCTTCATATTTATAA+AGG | - | chr3.4:50057047-50057066 | MS.gene026999:intron | 20.0% |
| !! | AATGATTATGATATTTCAGA+AGG | - | chr3.4:50057772-50057791 | MS.gene026999:intron | 20.0% |
| !! | CATAACTAACTACAATTTAA+TGG | + | chr3.4:50055759-50055778 | None:intergenic | 20.0% |
| !! | TAACTCCTTTATAAATATGA+AGG | + | chr3.4:50057055-50057074 | None:intergenic | 20.0% |
| !! | TATTTATAAAGGAGTTATCT+TGG | - | chr3.4:50057058-50057077 | MS.gene026999:intron | 20.0% |
| !! | TTTAATTATATTCCGACTTA+TGG | + | chr3.4:50058176-50058195 | None:intergenic | 20.0% |
| !!! | ATTTAGTATTTTCTGTTGAT+AGG | - | chr3.4:50057329-50057348 | MS.gene026999:CDS | 20.0% |
| !!! | ATTTTTTAGAATCATTTCGT+GGG | - | chr3.4:50058830-50058849 | MS.gene026999:CDS | 20.0% |
| !!! | GTCATTTTTAAAATGATTAC+CGG | - | chr3.4:50056240-50056259 | MS.gene026999:intron | 20.0% |
| !!! | TATTTTTTAGAATCATTTCG+TGG | - | chr3.4:50058829-50058848 | MS.gene026999:CDS | 20.0% |
| !!! | TTTAAAATGCAATATGAAGA+AGG | + | chr3.4:50055715-50055734 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTCTGTTGATA+GGG | - | chr3.4:50057330-50057349 | MS.gene026999:CDS | 20.0% |
| !!! | TTTTTTTTTGTAGTTTCACT+AGG | - | chr3.4:50056727-50056746 | MS.gene026999:intron | 20.0% |
| ! | ACACCTATTTATAACAGAAT+TGG | + | chr3.4:50057819-50057838 | None:intergenic | 25.0% |
| ! | ATAATATGAACTCAAGAAAC+AGG | + | chr3.4:50058790-50058809 | None:intergenic | 25.0% |
| ! | ATAATTTCAGGGACAAATTT+GGG | - | chr3.4:50056400-50056419 | MS.gene026999:intron | 25.0% |
| ! | GTTAACGTTTACCTAATATA+AGG | + | chr3.4:50057117-50057136 | None:intergenic | 25.0% |
| ! | TAAAGGTTTGTCAAATGATA+TGG | + | chr3.4:50057432-50057451 | None:intergenic | 25.0% |
| ! | TATAATTTCAGGGACAAATT+TGG | - | chr3.4:50056399-50056418 | MS.gene026999:intron | 25.0% |
| ! | TGACCAATTCTGTTATAAAT+AGG | - | chr3.4:50057813-50057832 | MS.gene026999:intron | 25.0% |
| ! | TTATTCCAAAGTTATTGTAG+TGG | - | chr3.4:50058352-50058371 | MS.gene026999:intron | 25.0% |
| ! | TTCGTTATCATCCTTATATT+AGG | - | chr3.4:50057103-50057122 | MS.gene026999:intron | 25.0% |
| !! | AGTGATTATGTTAGTTTCTA+AGG | - | chr3.4:50058238-50058257 | MS.gene026999:intron | 25.0% |
| !! | AGTTCTAATAATTTGGTCTT+TGG | - | chr3.4:50056528-50056547 | MS.gene026999:intron | 25.0% |
| !! | ATTCCTTTTAGATAACTAGT+TGG | - | chr3.4:50057356-50057375 | MS.gene026999:intron | 25.0% |
| !! | GCTGTAAAGTTCTAATAATT+TGG | - | chr3.4:50056521-50056540 | MS.gene026999:intron | 25.0% |
| !! | GTTCTAATAATTTGGTCTTT+GGG | - | chr3.4:50056529-50056548 | MS.gene026999:intron | 25.0% |
| !!! | ACAATAACTTTGGAATAAGA+GGG | + | chr3.4:50058350-50058369 | None:intergenic | 25.0% |
| !!! | CTAAACTCAAAAGTATTCTA+AGG | + | chr3.4:50056772-50056791 | None:intergenic | 25.0% |
| !!! | TACAATAACTTTGGAATAAG+AGG | + | chr3.4:50058351-50058370 | None:intergenic | 25.0% |
| !!! | TAGTTATATTCTAAAGCATG+TGG | - | chr3.4:50058747-50058766 | MS.gene026999:intron | 25.0% |
| !!! | TATGCTTTAATTTGATCTTC+AGG | - | chr3.4:50057272-50057291 | MS.gene026999:intron | 25.0% |
| !!! | TATTTTTTTGGTTATTTGCG+AGG | - | chr3.4:50057612-50057631 | MS.gene026999:intron | 25.0% |
| !!! | TCTTTTAGCAATATTTTGAG+TGG | - | chr3.4:50056009-50056028 | MS.gene026999:intron | 25.0% |
| AAAAAAAGTTTGAGTACCTG+AGG | + | chr3.4:50055689-50055708 | None:intergenic | 30.0% | |
| AAAAGCCACTACAATAACTT+TGG | + | chr3.4:50058360-50058379 | None:intergenic | 30.0% | |
| AAGTCACAACATACACAATA+AGG | + | chr3.4:50058041-50058060 | None:intergenic | 30.0% | |
| ACTCCAACTAGTTATCTAAA+AGG | + | chr3.4:50057362-50057381 | None:intergenic | 30.0% | |
| AGCTTATTGAAATCACAGTT+TGG | + | chr3.4:50057386-50057405 | None:intergenic | 30.0% | |
| AGTCACAACATACACAATAA+GGG | + | chr3.4:50058040-50058059 | None:intergenic | 30.0% | |
| ATAAATAGGTGTGAAAAGAG+AGG | - | chr3.4:50057827-50057846 | MS.gene026999:intron | 30.0% | |
| ATGAATGTAATCACATGAGT+TGG | + | chr3.4:50056218-50056237 | None:intergenic | 30.0% | |
| ATTCATTGCAGATAATGACA+TGG | - | chr3.4:50058391-50058410 | MS.gene026999:intron | 30.0% | |
| CACTAGGATGTTCAATAAAA+AGG | - | chr3.4:50056743-50056762 | MS.gene026999:intron | 30.0% | |
| CATATTGGATCCAAATAGTA+TGG | + | chr3.4:50057668-50057687 | None:intergenic | 30.0% | |
| CATGTTATCATATGAATGCT+TGG | - | chr3.4:50055931-50055950 | MS.gene026999:intron | 30.0% | |
| CCTACATAATAAAACATGCA+AGG | + | chr3.4:50057139-50057158 | None:intergenic | 30.0% | |
| CGCTAGCAAATATAATTTCA+GGG | - | chr3.4:50056389-50056408 | MS.gene026999:intron | 30.0% | |
| CTTATCCATTAGATACTCTA+TGG | + | chr3.4:50056884-50056903 | None:intergenic | 30.0% | |
| GAAGTACAAGAACACTTTAA+AGG | + | chr3.4:50057449-50057468 | None:intergenic | 30.0% | |
| GTAATCATAGATATAGCTGT+CGG | + | chr3.4:50055836-50055855 | None:intergenic | 30.0% | |
| TAAATAGGTGTGAAAAGAGA+GGG | - | chr3.4:50057828-50057847 | MS.gene026999:intron | 30.0% | |
| TAATTTCAGGGACAAATTTG+GGG | - | chr3.4:50056401-50056420 | MS.gene026999:intron | 30.0% | |
| TAGGATGTTCAATAAAAAGG+TGG | - | chr3.4:50056746-50056765 | MS.gene026999:intron | 30.0% | |
| TAGTTCAACAGCTATTAGAT+TGG | - | chr3.4:50058434-50058453 | MS.gene026999:intron | 30.0% | |
| TATGATATTTCAGAAGGCTA+CGG | - | chr3.4:50057778-50057797 | MS.gene026999:intron | 30.0% | |
| TCGCTAGCAAATATAATTTC+AGG | - | chr3.4:50056388-50056407 | MS.gene026999:intron | 30.0% | |
| TCTGATGTAATTCCATAAGT+CGG | - | chr3.4:50058161-50058180 | MS.gene026999:intron | 30.0% | |
| TGCAAAAAACAAGTTTATCC+CGG | + | chr3.4:50056981-50057000 | None:intergenic | 30.0% | |
| TTATTATCTGTGTTGTGTGT+TGG | - | chr3.4:50055883-50055902 | MS.gene026999:CDS | 30.0% | |
| TTCCTGACACTAAATTAAGA+AGG | + | chr3.4:50058114-50058133 | None:intergenic | 30.0% | |
| TTTGTCTAGCAAAAAAAGAG+AGG | + | chr3.4:50058206-50058225 | None:intergenic | 30.0% | |
| ! | AAACTCCATAGAGTATCTAA+TGG | - | chr3.4:50056876-50056895 | MS.gene026999:intron | 30.0% |
| ! | AAGAAGTTGAAATCAGCTTT+TGG | + | chr3.4:50056851-50056870 | None:intergenic | 30.0% |
| ! | AATGGATAAGTGCTTGATTT+TGG | - | chr3.4:50056894-50056913 | MS.gene026999:intron | 30.0% |
| ! | ACTGTAATGTCTATTTGCTA+AGG | - | chr3.4:50058887-50058906 | MS.gene026999:CDS | 30.0% |
| ! | AGAAGTTGAAATCAGCTTTT+GGG | + | chr3.4:50056850-50056869 | None:intergenic | 30.0% |
| ! | CAGAGATTTATCTCTTTTTG+AGG | - | chr3.4:50057895-50057914 | MS.gene026999:CDS | 30.0% |
| ! | TATCTTCTCCTCTTAATTTG+AGG | - | chr3.4:50057985-50058004 | MS.gene026999:intron | 30.0% |
| ! | TTTTGCAAGATCAACACAAT+CGG | + | chr3.4:50058633-50058652 | None:intergenic | 30.0% |
| !! | AATAACTTTGGAATAAGAGG+GGG | + | chr3.4:50058348-50058367 | None:intergenic | 30.0% |
| !! | ATTATCTAGACAGTTCTAAG+TGG | - | chr3.4:50056955-50056974 | MS.gene026999:CDS | 30.0% |
| !! | CAATAACTTTGGAATAAGAG+GGG | + | chr3.4:50058349-50058368 | None:intergenic | 30.0% |
| !! | CCTTGCATGTTTTATTATGT+AGG | - | chr3.4:50057136-50057155 | MS.gene026999:intron | 30.0% |
| !! | TGCATGTTTTATTATGTAGG+CGG | - | chr3.4:50057139-50057158 | MS.gene026999:intron | 30.0% |
| !!! | TGTGTTATTTTTGTTCTGTC+TGG | - | chr3.4:50056499-50056518 | MS.gene026999:intron | 30.0% |
| AAGCCAGAGAATTCTAAGTT+TGG | + | chr3.4:50058674-50058693 | None:intergenic | 35.0% | |
| AATATTGTTGCAGCCAAATC+AGG | - | chr3.4:50058596-50058615 | MS.gene026999:intron | 35.0% | |
| ACGAAAAACTTGTATGCATG+AGG | - | chr3.4:50056111-50056130 | MS.gene026999:intron | 35.0% | |
| AGCCTTCTTAATTTAGTGTC+AGG | - | chr3.4:50058109-50058128 | MS.gene026999:intron | 35.0% | |
| AGTATAAACATCGGAAACAG+TGG | + | chr3.4:50057014-50057033 | None:intergenic | 35.0% | |
| AGTTGGCGAATCATAGAAAT+GGG | + | chr3.4:50055605-50055624 | None:intergenic | 35.0% | |
| ATGATATTTCAGAAGGCTAC+GGG | - | chr3.4:50057779-50057798 | MS.gene026999:intron | 35.0% | |
| CTAGTAAAATTGAGGAAGGA+GGG | - | chr3.4:50057748-50057767 | MS.gene026999:intron | 35.0% | |
| CTATGCTCTTAGAACTGTAA+AGG | - | chr3.4:50057863-50057882 | MS.gene026999:intron | 35.0% | |
| CTCTTAGAACTGTAAAGGTT+GGG | - | chr3.4:50057868-50057887 | MS.gene026999:intron | 35.0% | |
| GACACTAAATTAAGAAGGCT+CGG | + | chr3.4:50058109-50058128 | None:intergenic | 35.0% | |
| GAGTGATGCTAGTAAAATTG+AGG | - | chr3.4:50057740-50057759 | MS.gene026999:intron | 35.0% | |
| GATAGGAACCTCAAATTAAG+AGG | + | chr3.4:50057996-50058015 | None:intergenic | 35.0% | |
| GATGCTAGTAAAATTGAGGA+AGG | - | chr3.4:50057744-50057763 | MS.gene026999:intron | 35.0% | |
| GGAATTAACTAATGGCCTTT+GGG | + | chr3.4:50057701-50057720 | None:intergenic | 35.0% | |
| GTGCATTGTTTGTCAGAATA+CGG | - | chr3.4:50058532-50058551 | MS.gene026999:intron | 35.0% | |
| TAAAGGAGTTATCTTGGTTG+AGG | - | chr3.4:50057064-50057083 | MS.gene026999:intron | 35.0% | |
| TGGATCCAATATGTGAATGT+GGG | - | chr3.4:50057675-50057694 | MS.gene026999:intron | 35.0% | |
| TGTCCAAACTTAGAATTCTC+TGG | - | chr3.4:50058668-50058687 | MS.gene026999:intron | 35.0% | |
| TGTTCTTGTACTTCTGTAAC+TGG | - | chr3.4:50057455-50057474 | MS.gene026999:intron | 35.0% | |
| TTATCTTGGTTGAGGTTGTT+TGG | - | chr3.4:50057072-50057091 | MS.gene026999:intron | 35.0% | |
| TTCAGTCCTGCAATTTGATA+GGG | + | chr3.4:50058937-50058956 | None:intergenic | 35.0% | |
| TTGGATCCAATATGTGAATG+TGG | - | chr3.4:50057674-50057693 | MS.gene026999:intron | 35.0% | |
| TTGTCAAATGATATGGCAAG+TGG | + | chr3.4:50057425-50057444 | None:intergenic | 35.0% | |
| ! | TCTGCATCACTGTAATTTTG+TGG | - | chr3.4:50058068-50058087 | MS.gene026999:intron | 35.0% |
| ! | TTCATATCTCTAAGAGCTAC+TGG | + | chr3.4:50057231-50057250 | None:intergenic | 35.0% |
| ! | TTCTCTGGCTTAATGACAAT+AGG | - | chr3.4:50058683-50058702 | MS.gene026999:intron | 35.0% |
| !! | ATAACTTTGGAATAAGAGGG+GGG | + | chr3.4:50058347-50058366 | None:intergenic | 35.0% |
| !! | CATAGAAATGGGTTTGGTTT+TGG | + | chr3.4:50055594-50055613 | None:intergenic | 35.0% |
| !! | CTTTACAGTTCTAAGAGCAT+AGG | + | chr3.4:50057865-50057884 | None:intergenic | 35.0% |
| !! | TTGAAGGAGTTTTAACCAAG+AGG | + | chr3.4:50058277-50058296 | None:intergenic | 35.0% |
| !!! | AAGCATACTCAGAAGTGTTT+TGG | + | chr3.4:50056619-50056638 | None:intergenic | 35.0% |
| ACTATTACCCGAAAGTTCTG+CGG | + | chr3.4:50058731-50058750 | None:intergenic | 40.0% | |
| AGATACGCAGAGTATGTGAT+AGG | + | chr3.4:50058013-50058032 | None:intergenic | 40.0% | |
| ATATCCAGTGGCACTTCATT+GGG | - | chr3.4:50056574-50056593 | MS.gene026999:intron | 40.0% | |
| ATTCCCTCAAGCCTATTATG+TGG | - | chr3.4:50057716-50057735 | MS.gene026999:intron | 40.0% | |
| CTAAGAGCTACTGGTAATAC+TGG | + | chr3.4:50057222-50057241 | None:intergenic | 40.0% | |
| CTTCAGTCCTGCAATTTGAT+AGG | + | chr3.4:50058938-50058957 | None:intergenic | 40.0% | |
| GAACATACATTCTTCTCCAC+TGG | + | chr3.4:50057557-50057576 | None:intergenic | 40.0% | |
| GAGCAATGTGAACTGTCAAT+GGG | - | chr3.4:50058984-50059003 | MS.gene026999:CDS | 40.0% | |
| GAGCTTTCTCAACGATTTCT+TGG | + | chr3.4:50055667-50055686 | None:intergenic | 40.0% | |
| GAGTTGGCGAATCATAGAAA+TGG | + | chr3.4:50055606-50055625 | None:intergenic | 40.0% | |
| GCACGAACATTTCTGATTGA+AGG | - | chr3.4:50056150-50056169 | MS.gene026999:intron | 40.0% | |
| GCTAGTAAAATTGAGGAAGG+AGG | - | chr3.4:50057747-50057766 | MS.gene026999:intron | 40.0% | |
| GCTCTTAGAACTGTAAAGGT+TGG | - | chr3.4:50057867-50057886 | MS.gene026999:intron | 40.0% | |
| GGCTTGAGGGAATTAACTAA+TGG | + | chr3.4:50057709-50057728 | None:intergenic | 40.0% | |
| GGGAATTAACTAATGGCCTT+TGG | + | chr3.4:50057702-50057721 | None:intergenic | 40.0% | |
| GTCACTAATGGAAGTGATGA+TGG | - | chr3.4:50056298-50056317 | MS.gene026999:intron | 40.0% | |
| GTCTAGCAAAAAAAGAGAGG+TGG | + | chr3.4:50058203-50058222 | None:intergenic | 40.0% | |
| TACTGATCGGAAAGCTAAGA+CGG | + | chr3.4:50055501-50055520 | None:intergenic | 40.0% | |
| TATGAAACACAGACACTCCT+CGG | - | chr3.4:50055775-50055794 | MS.gene026999:CDS | 40.0% | |
| TGTAGACCCTATCAAATTGC+AGG | - | chr3.4:50058928-50058947 | MS.gene026999:CDS | 40.0% | |
| TTCCCTCAAGCCTATTATGT+GGG | - | chr3.4:50057717-50057736 | MS.gene026999:intron | 40.0% | |
| ! | AAGAAATCGTCTGAGGGTTT+TGG | - | chr3.4:50057519-50057538 | MS.gene026999:intron | 40.0% |
| ! | AGTTTGCAAGGCACTTGAAA+TGG | - | chr3.4:50058956-50058975 | MS.gene026999:CDS | 40.0% |
| ! | GCGAATCATAGAAATGGGTT+TGG | + | chr3.4:50055600-50055619 | None:intergenic | 40.0% |
| ! | TTCCCAGGTTTGAAACCATA+CGG | + | chr3.4:50057501-50057520 | None:intergenic | 40.0% |
| !! | AGGAGTTTTAACCAAGAGGT+CGG | + | chr3.4:50058273-50058292 | None:intergenic | 40.0% |
| !! | TTTTGAGGAGCAATAGCTCT+GGG | - | chr3.4:50057910-50057929 | MS.gene026999:CDS | 40.0% |
| !! | TTTTTGAGGAGCAATAGCTC+TGG | - | chr3.4:50057909-50057928 | MS.gene026999:CDS | 40.0% |
| AATCGTTGAGAAAGCTCCTC+AGG | - | chr3.4:50055670-50055689 | MS.gene026999:intron | 45.0% | |
| ACGCAGGTCATAGAGTCTTT+GGG | - | chr3.4:50055630-50055649 | MS.gene026999:intron | 45.0% | |
| AGCATCACTCCCCACATAAT+AGG | + | chr3.4:50057730-50057749 | None:intergenic | 45.0% | |
| ATATGTGAATGTGGGCCCAA+AGG | - | chr3.4:50057683-50057702 | MS.gene026999:intron | 45.0% | |
| CAACGTGTCAGTGTCAAGTT+CGG | - | chr3.4:50056266-50056285 | MS.gene026999:intron | 45.0% | |
| CCAAATTTGGCCATGGTTGA+GGG | - | chr3.4:50057166-50057185 | MS.gene026999:intron | 45.0% | |
| CGAAGCTGAGCCATACTATT+TGG | - | chr3.4:50057655-50057674 | MS.gene026999:intron | 45.0% | |
| CTTGTACTTCTGTAACTGGC+AGG | - | chr3.4:50057459-50057478 | MS.gene026999:intron | 45.0% | |
| GAATCATTTCGTGGGTTTCG+TGG | - | chr3.4:50058838-50058857 | MS.gene026999:CDS | 45.0% | |
| GACATTACAGTTCAGCATCG+AGG | + | chr3.4:50058878-50058897 | None:intergenic | 45.0% | |
| GACCGTATGGTTTCAAACCT+GGG | - | chr3.4:50057496-50057515 | MS.gene026999:intron | 45.0% | |
| GATATCCAGTGGCACTTCAT+TGG | - | chr3.4:50056573-50056592 | MS.gene026999:intron | 45.0% | |
| GATGAGCTGAGCAATGTTGA+AGG | + | chr3.4:50058293-50058312 | None:intergenic | 45.0% | |
| GCAAGATCAACACAATCGGA+AGG | + | chr3.4:50058629-50058648 | None:intergenic | 45.0% | |
| GGAAGGATCAACACCTGATT+TGG | + | chr3.4:50058612-50058631 | None:intergenic | 45.0% | |
| GGAGCAATGTGAACTGTCAA+TGG | - | chr3.4:50058983-50059002 | MS.gene026999:CDS | 45.0% | |
| GGCAAATAACCTTGACCGTA+TGG | - | chr3.4:50057483-50057502 | MS.gene026999:intron | 45.0% | |
| TATGACCTGCGTCATAGAGT+TGG | + | chr3.4:50055622-50055641 | None:intergenic | 45.0% | |
| TCCAAATTTGGCCATGGTTG+AGG | - | chr3.4:50057165-50057184 | MS.gene026999:intron | 45.0% | |
| TCCCCACATAATAGGCTTGA+GGG | + | chr3.4:50057722-50057741 | None:intergenic | 45.0% | |
| TCCCTCAAGCCTATTATGTG+GGG | - | chr3.4:50057718-50057737 | MS.gene026999:intron | 45.0% | |
| TGACACGTGTGTCAAAAACC+AGG | + | chr3.4:50056180-50056199 | None:intergenic | 45.0% | |
| TGACCGTATGGTTTCAAACC+TGG | - | chr3.4:50057495-50057514 | MS.gene026999:intron | 45.0% | |
| TGTAGGCGGAGTTCCAAATT+TGG | - | chr3.4:50057153-50057172 | MS.gene026999:intron | 45.0% | |
| TTGCAGGACTGAAGTTTGCA+AGG | - | chr3.4:50058944-50058963 | MS.gene026999:CDS | 45.0% | |
| TTGGGCCCACATTCACATAT+TGG | + | chr3.4:50057683-50057702 | None:intergenic | 45.0% | |
| TTGGTGCAAGTAAACACCAG+TGG | - | chr3.4:50057538-50057557 | MS.gene026999:intron | 45.0% | |
| ! | AAGTGCCACTGGATATCTTG+CGG | + | chr3.4:50056570-50056589 | None:intergenic | 45.0% |
| ! | GGTTTGAAACCATACGGTCA+AGG | + | chr3.4:50057495-50057514 | None:intergenic | 45.0% |
| ! | TTTCTGATTGAAGGTGTGCC+TGG | - | chr3.4:50056159-50056178 | MS.gene026999:intron | 45.0% |
| ! | TTTGAGGAGCAATAGCTCTG+GGG | - | chr3.4:50057911-50057930 | MS.gene026999:CDS | 45.0% |
| !! | ACATGAGTTGGTGTTGTGTC+AGG | + | chr3.4:50056206-50056225 | None:intergenic | 45.0% |
| !! | GGAGTTTTAACCAAGAGGTC+GGG | + | chr3.4:50058272-50058291 | None:intergenic | 45.0% |
| !! | GGGCACGTCATTGTTTCTAT+AGG | + | chr3.4:50056830-50056849 | None:intergenic | 45.0% |
| !! | TCTAGACAGTTCTAAGTGGC+CGG | - | chr3.4:50056959-50056978 | MS.gene026999:CDS | 45.0% |
| AACTCGATCGGGTTTGGATC+CGG | + | chr3.4:50055555-50055574 | None:intergenic | 50.0% | |
| ACACAGACACTCCTCGGATT+AGG | - | chr3.4:50055781-50055800 | MS.gene026999:CDS | 50.0% | |
| ACCTGGGAAGAAATCGTCTG+AGG | - | chr3.4:50057512-50057531 | MS.gene026999:intron | 50.0% | |
| AGCTTCCGCAAGATATCCAG+TGG | - | chr3.4:50056562-50056581 | MS.gene026999:intron | 50.0% | |
| ATCAACCGAGCTGCCTACTT+AGG | - | chr3.4:50058310-50058329 | MS.gene026999:intron | 50.0% | |
| ATCCAAACCCGATCGAGTTC+GGG | - | chr3.4:50055556-50055575 | MS.gene026999:CDS | 50.0% | |
| ATTCGCCAACTCTATGACGC+AGG | - | chr3.4:50055614-50055633 | MS.gene026999:intron | 50.0% | |
| ATTGTCCACTCCCTCAACCA+TGG | + | chr3.4:50057179-50057198 | None:intergenic | 50.0% | |
| CAACAAGCAGCGGAAAGATC+CGG | - | chr3.4:50055533-50055552 | MS.gene026999:CDS | 50.0% | |
| CCCTCAACCATGGCCAAATT+TGG | + | chr3.4:50057169-50057188 | None:intergenic | 50.0% | |
| CCTCAACTCCGCAGAACTTT+CGG | - | chr3.4:50058720-50058739 | MS.gene026999:intron | 50.0% | |
| CCTGGGAAGAAATCGTCTGA+GGG | - | chr3.4:50057513-50057532 | MS.gene026999:intron | 50.0% | |
| CGCAGGTCATAGAGTCTTTG+GGG | - | chr3.4:50055631-50055650 | MS.gene026999:intron | 50.0% | |
| CGGAGTTCCAAATTTGGCCA+TGG | - | chr3.4:50057159-50057178 | MS.gene026999:intron | 50.0% | |
| CGGTGTGCGTATGTCACTAA+TGG | - | chr3.4:50056286-50056305 | MS.gene026999:intron | 50.0% | |
| CTCAACTCCGCAGAACTTTC+GGG | - | chr3.4:50058721-50058740 | MS.gene026999:intron | 50.0% | |
| CTCCCCACATAATAGGCTTG+AGG | + | chr3.4:50057723-50057742 | None:intergenic | 50.0% | |
| GAACTGTCAATGGGCATGTC+TGG | - | chr3.4:50058993-50059012 | MS.gene026999:CDS | 50.0% | |
| GAAGCACAGAGACACAGACA+CGG | + | chr3.4:50055912-50055931 | None:intergenic | 50.0% | |
| GACGCAGGTCATAGAGTCTT+TGG | - | chr3.4:50055629-50055648 | MS.gene026999:intron | 50.0% | |
| GATCCAAACCCGATCGAGTT+CGG | - | chr3.4:50055555-50055574 | MS.gene026999:CDS | 50.0% | |
| GTACTTCTGTAACTGGCAGG+TGG | - | chr3.4:50057462-50057481 | MS.gene026999:intron | 50.0% | |
| TGACACTGACACGTTGACAC+CGG | + | chr3.4:50056262-50056281 | None:intergenic | 50.0% | |
| TGAGGGAGTGGACAATCAGA+AGG | - | chr3.4:50057183-50057202 | MS.gene026999:intron | 50.0% | |
| TGAGTCCTAAGTAGGCAGCT+CGG | + | chr3.4:50058318-50058337 | None:intergenic | 50.0% | |
| TGCGGAGTTGAGGTATAGTC+TGG | + | chr3.4:50058713-50058732 | None:intergenic | 50.0% | |
| ! | AATGCCCAATGAAGTGCCAC+TGG | + | chr3.4:50056581-50056600 | None:intergenic | 50.0% |
| ! | CAAGGCACTTGAAATGGACG+AGG | - | chr3.4:50058962-50058981 | MS.gene026999:CDS | 50.0% |
| ! | CGAGGTTTTCGTACATCCTC+GGG | - | chr3.4:50057630-50057649 | MS.gene026999:intron | 50.0% |
| ! | GCGAGGTTTTCGTACATCCT+CGG | - | chr3.4:50057629-50057648 | MS.gene026999:intron | 50.0% |
| ! | GGAAGGTGTGAGTCCTAAGT+AGG | + | chr3.4:50058326-50058345 | None:intergenic | 50.0% |
| ! | GGACACGGAGCATTACTGAT+CGG | + | chr3.4:50055514-50055533 | None:intergenic | 50.0% |
| ! | TTTCCGCTGCTTGTTGGACA+CGG | + | chr3.4:50055529-50055548 | None:intergenic | 50.0% |
| !! | CTAGACAGTTCTAAGTGGCC+GGG | - | chr3.4:50056960-50056979 | MS.gene026999:CDS | 50.0% |
| !! | CTTTGGAATAAGAGGGGGGA+AGG | + | chr3.4:50058343-50058362 | None:intergenic | 50.0% |
| CCCTCAGACGATTTCTTCCC+AGG | + | chr3.4:50057516-50057535 | None:intergenic | 55.0% | |
| CCGAAAGTTCTGCGGAGTTG+AGG | + | chr3.4:50058723-50058742 | None:intergenic | 55.0% | |
| CGGATCTTTCCGCTGCTTGT+TGG | + | chr3.4:50055535-50055554 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCACGGTGT+CGG | - | chr3.4:50055797-50055816 | MS.gene026999:CDS | 55.0% | |
| GGTTAGAACTCCCGACCTCT+TGG | - | chr3.4:50058259-50058278 | MS.gene026999:intron | 55.0% | |
| TGCAACGACCCGAACTCGAT+CGG | + | chr3.4:50055567-50055586 | None:intergenic | 55.0% | |
| TTTGGCCATGGTTGAGGGAG+TGG | - | chr3.4:50057171-50057190 | MS.gene026999:intron | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCA+CGG | - | chr3.4:50055791-50055810 | MS.gene026999:CDS | 55.0% |
| ACCGTGACACGCCTAATCCG+AGG | + | chr3.4:50055795-50055814 | None:intergenic | 60.0% | |
| GACCCGAACTCGATCGGGTT+TGG | + | chr3.4:50055561-50055580 | None:intergenic | 60.0% | |
| GCAACGACCCGAACTCGATC+GGG | + | chr3.4:50055566-50055585 | None:intergenic | 60.0% | |
| GCTCCGTGTCCAACAAGCAG+CGG | - | chr3.4:50055523-50055542 | MS.gene026999:CDS | 60.0% | |
| ATGGCTCAGCTTCGTGCCCG+AGG | + | chr3.4:50057649-50057668 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50055482 | 50059031 | 50055482 | ID=MS.gene026999 |
| chr3.4 | mRNA | 50055482 | 50059031 | 50055482 | ID=MS.gene026999.t1;Parent=MS.gene026999 |
| chr3.4 | exon | 50058822 | 50059031 | 50058822 | ID=MS.gene026999.t1.exon1;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50058822 | 50059031 | 50058822 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| chr3.4 | exon | 50057883 | 50057949 | 50057883 | ID=MS.gene026999.t1.exon2;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50057883 | 50057949 | 50057883 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| chr3.4 | exon | 50057309 | 50057355 | 50057309 | ID=MS.gene026999.t1.exon3;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50057309 | 50057355 | 50057309 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| chr3.4 | exon | 50056945 | 50057032 | 50056945 | ID=MS.gene026999.t1.exon4;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50056945 | 50057032 | 50056945 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| chr3.4 | exon | 50055771 | 50055904 | 50055771 | ID=MS.gene026999.t1.exon5;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50055771 | 50055904 | 50055771 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| chr3.4 | exon | 50055482 | 50055580 | 50055482 | ID=MS.gene026999.t1.exon6;Parent=MS.gene026999.t1 |
| chr3.4 | CDS | 50055482 | 50055580 | 50055482 | ID=cds.MS.gene026999.t1;Parent=MS.gene026999.t1 |
| Gene Sequence |
| Protein sequence |
