AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00778

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00778.t1 MTR_2g024060 95.902 244 10 0 1 244 1 244 8.29e-178 488
MS.gene00778.t1 MTR_3g053230 64.344 244 85 1 1 242 1 244 3.01e-117 335
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00778.t1 AT1G11930 73.820 233 61 0 9 241 23 255 2.97e-130 368
MS.gene00778.t1 AT1G11930 73.191 235 61 1 9 241 23 257 1.25e-128 364
MS.gene00778.t1 AT4G26860 63.866 238 86 0 4 241 5 242 2.52e-118 338
MS.gene00778.t1 AT4G26860 61.290 248 86 1 4 241 5 252 4.83e-115 330

Find 59 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGGTTTCCTGCCAATTT+TGG 0.164565 2.3:+64568672 None:intergenic
ATATTTCTTGCAGCTAAATT+TGG 0.176206 2.3:-64568234 MS.gene00778:intron
AGGATTGGAACCGCAATATT+TGG 0.199745 2.3:-64567782 MS.gene00778:CDS
AATAAAGTTAAGCCTCTTCT+TGG 0.269719 2.3:-64569895 MS.gene00778:intron
ACAAACTTCACTTCTACATT+TGG 0.318218 2.3:+64567981 None:intergenic
GGCCACAAAATTCAAGGTTT+GGG 0.324429 2.3:+64568160 None:intergenic
AACAGCTACTTCTCTTCTTT+CGG 0.325969 2.3:+64567743 None:intergenic
AGGCCACAAAATTCAAGGTT+TGG 0.337500 2.3:+64568159 None:intergenic
GATCGCGCCATAGCCAAAAT+TGG 0.365191 2.3:-64568685 MS.gene00778:CDS
AAAATGCCACTCAATATCTT+CGG 0.403414 2.3:+64569936 None:intergenic
CGGCGCAGCGGCGTCGCTAA+AGG 0.404321 2.3:-64570139 MS.gene00778:CDS
AGATGGGAAGTACAACTGTT+AGG 0.411926 2.3:-64567802 MS.gene00778:CDS
CTCACCGAAGCAACGGTGTC+CGG 0.425929 2.3:+64569999 None:intergenic
CCCGGATTTCTTTCACGTCT+CGG 0.430118 2.3:+64570076 None:intergenic
GACGCCGGACACCGTTGCTT+CGG 0.442460 2.3:-64570003 MS.gene00778:CDS
CCAGCATGCCAATTGTCATT+AGG 0.447962 2.3:+64568139 None:intergenic
ACCGAGACGTGAAAGAAATC+CGG 0.448843 2.3:-64570077 MS.gene00778:CDS
CTTCGGTGAGAATTACGTTC+AGG 0.449926 2.3:-64569986 MS.gene00778:CDS
CGAAGTCAGTTTCTATGCTC+CGG 0.452604 2.3:-64570035 MS.gene00778:CDS
CCTAATGACAATTGGCATGC+TGG 0.454272 2.3:-64568139 MS.gene00778:CDS
TTCTTTCGGTGGATACTCTC+TGG 0.460364 2.3:+64567757 None:intergenic
AAATGCCACTCAATATCTTC+GGG 0.464259 2.3:+64569937 None:intergenic
CTCTCTACATAAGCAAGGTT+GGG 0.465215 2.3:+64569344 None:intergenic
TCATTAGGCCACAAAATTCA+AGG 0.469615 2.3:+64568154 None:intergenic
CACGTCTCGGTTCGATCTCT+CGG 0.472279 2.3:+64570089 None:intergenic
AGCACAATGTGAGCTGTCAA+TGG 0.479667 2.3:-64567938 MS.gene00778:CDS
CGCAGCGGCGTCGCTAAAGG+CGG 0.492772 2.3:-64570136 MS.gene00778:CDS
ACTCTCTACATAAGCAAGGT+TGG 0.501292 2.3:+64569343 None:intergenic
CCGAGACGTGAAAGAAATCC+GGG 0.508092 2.3:-64570076 MS.gene00778:CDS
GAAAGAAATCCGGGTGGTGG+CGG 0.512147 2.3:-64570067 MS.gene00778:CDS
GGAAGTACAACTGTTAGGAT+TGG 0.523188 2.3:-64567797 MS.gene00778:CDS
TCTTACTCGCCGCCACCACC+CGG 0.527906 2.3:+64570058 None:intergenic
AGTGAAGTTTGTGAGGCACT+TGG 0.531378 2.3:-64567970 MS.gene00778:CDS
AGCTACTTCTCTTCTTTCGG+TGG 0.531529 2.3:+64567746 None:intergenic
GAAGTCAGTTTCTATGCTCC+GGG 0.535433 2.3:-64570034 MS.gene00778:CDS
GCACAATGTGAGCTGTCAAT+GGG 0.536734 2.3:-64567937 MS.gene00778:CDS
CGTGAAAGAAATCCGGGTGG+TGG 0.546989 2.3:-64570070 MS.gene00778:CDS
CGTAATTCTCACCGAAGCAA+CGG 0.556077 2.3:+64569992 None:intergenic
GCGCCATAGCCAAAATTGGC+AGG 0.559259 2.3:-64568681 MS.gene00778:CDS
TCGATCTCTCGGCGGCGTGG+TGG 0.566044 2.3:+64570100 None:intergenic
ACAAGGTCTAGACACTGTGC+TGG 0.569524 2.3:+64568204 None:intergenic
TAAAATGACATACCAAGAAG+AGG 0.575637 2.3:+64569883 None:intergenic
TGGCTATGGCGCGATCAAGA+AGG 0.581937 2.3:+64568692 None:intergenic
TTTGTTGAAGTGAACACAAG+CGG 0.591555 2.3:-64568643 MS.gene00778:CDS
CTCTCTGGCTCCAAATATTG+CGG 0.594731 2.3:+64567772 None:intergenic
AGAGAGTGTCGACGATGAGA+AGG 0.599683 2.3:-64569327 MS.gene00778:intron
TCAATATCTTCGGGAAGCTG+AGG 0.600112 2.3:+64569946 None:intergenic
GTCCGGCGTCATACACCTCC+CGG 0.615664 2.3:+64570016 None:intergenic
CTCCGGGAGGTGTATGACGC+CGG 0.616898 2.3:-64570018 MS.gene00778:CDS
ATCATTACAGGGCGGCGCAG+CGG 0.626585 2.3:-64570151 MS.gene00778:CDS
ATGTAGAAGTGAAGTTTGTG+AGG 0.640698 2.3:-64567977 MS.gene00778:CDS
CGACACTCTCTACATAAGCA+AGG 0.641240 2.3:+64569339 None:intergenic
GGTTCGATCTCTCGGCGGCG+TGG 0.642322 2.3:+64570097 None:intergenic
AAAATGACATCATCATTACA+GGG 0.643779 2.3:-64570162 MS.gene00778:CDS
AGCTTCCCGAAGATATTGAG+TGG 0.664023 2.3:-64569942 MS.gene00778:CDS
GTCAGTTTCTATGCTCCGGG+AGG 0.684356 2.3:-64570031 MS.gene00778:CDS
GTCTCGGTTCGATCTCTCGG+CGG 0.745714 2.3:+64570092 None:intergenic
ATGACATCATCATTACAGGG+CGG 0.771534 2.3:-64570159 MS.gene00778:CDS
AGACGTGAAAGAAATCCGGG+TGG 0.791466 2.3:-64570073 MS.gene00778:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTTTTTAAAAAATACA+CGG - chr2.3:64570026-64570045 MS.gene00778:CDS 10.0%
!! AAAATGTTTAATTGTATGTT+TGG - chr2.3:64568399-64568418 MS.gene00778:intron 15.0%
!! AAAATTTCTATAAAAGAATC+GGG + chr2.3:64569457-64569476 None:intergenic 15.0%
!! CAAAATTTCTATAAAAGAAT+CGG + chr2.3:64569458-64569477 None:intergenic 15.0%
!!! ATTATTTCATAGAACATTTT+GGG + chr2.3:64569071-64569090 None:intergenic 15.0%
!!! ATTTTTGTTTCTTAATACTT+TGG - chr2.3:64568608-64568627 MS.gene00778:intron 15.0%
!!! TTGTAACAATATATTTTACA+AGG + chr2.3:64569723-64569742 None:intergenic 15.0%
!!! TTTTTTGTATTTATGGATAT+AGG - chr2.3:64568466-64568485 MS.gene00778:intron 15.0%
!! AAATTTCTATAAAAGAATCG+GGG + chr2.3:64569456-64569475 None:intergenic 20.0%
!! ATCCATAAATACAAAAAAAG+TGG + chr2.3:64568464-64568483 None:intergenic 20.0%
!! GCACAAAATAAAATTTAGTT+TGG + chr2.3:64569892-64569911 None:intergenic 20.0%
!! TAGTAAACTGATATGAAAAT+AGG - chr2.3:64569406-64569425 MS.gene00778:intron 20.0%
!! TTTACATAAAGTTTACATCT+GGG - chr2.3:64568707-64568726 MS.gene00778:intron 20.0%
!!! AAGCCATGTTAAAATATTTT+GGG + chr2.3:64569385-64569404 None:intergenic 20.0%
!!! ATAAAGGTACATTTTTTAAC+TGG - chr2.3:64568317-64568336 MS.gene00778:intron 20.0%
!!! CATTATTTCATAGAACATTT+TGG + chr2.3:64569072-64569091 None:intergenic 20.0%
!!! TAACCCAAAATATTTTAACA+TGG - chr2.3:64569379-64569398 MS.gene00778:intron 20.0%
!!! TTCCACTTTTTTTGTATTTA+TGG - chr2.3:64568459-64568478 MS.gene00778:intron 20.0%
!!! TTCTATGAAATAATGCATTT+TGG - chr2.3:64569077-64569096 MS.gene00778:intron 20.0%
!!! TTTTACATAAAGTTTACATC+TGG - chr2.3:64568706-64568725 MS.gene00778:intron 20.0%
! AACACTAATTAGACTCATAA+AGG - chr2.3:64568301-64568320 MS.gene00778:intron 25.0%
! AAGAGAAATCACAAAATGAT+AGG + chr2.3:64568788-64568807 None:intergenic 25.0%
! AAGTAGTCTATATATAGTAC+AGG - chr2.3:64568889-64568908 MS.gene00778:intron 25.0%
! AATTAGTGTTTGAACATGTT+TGG + chr2.3:64568291-64568310 None:intergenic 25.0%
! ACTTCAACAAAAACTTTCAA+TGG + chr2.3:64569255-64569274 None:intergenic 25.0%
! ATATTTCTTGCAGCTAAATT+TGG - chr2.3:64569673-64569692 MS.gene00778:intron 25.0%
! CAGTTCATCACAATAAATAT+TGG + chr2.3:64569528-64569547 None:intergenic 25.0%
! TGTTTCTTAATACTTTGGTA+GGG - chr2.3:64568613-64568632 MS.gene00778:intron 25.0%
! TTGACAATAACTTTACAGAA+GGG - chr2.3:64568919-64568938 MS.gene00778:intron 25.0%
! TTTGACAATAACTTTACAGA+AGG - chr2.3:64568918-64568937 MS.gene00778:intron 25.0%
!! ATATTGAGTGGCATTTTATT+GGG - chr2.3:64567977-64567996 MS.gene00778:CDS 25.0%
!! ATATTTTCCAAGTGTGTTTA+AGG - chr2.3:64568650-64568669 MS.gene00778:CDS 25.0%
!! ATTTGAAGTGATTTGAGTTT+AGG - chr2.3:64568086-64568105 MS.gene00778:intron 25.0%
!! CTAATTTTGTAGATTGAGAT+GGG - chr2.3:64570089-64570108 MS.gene00778:CDS 25.0%
!! GAAGCCATGTTAAAATATTT+TGG + chr2.3:64569386-64569405 None:intergenic 25.0%
!! TATCATTTTGTGATTTCTCT+TGG - chr2.3:64568787-64568806 MS.gene00778:intron 25.0%
!! TCTAATTTTGTAGATTGAGA+TGG - chr2.3:64570088-64570107 MS.gene00778:CDS 25.0%
!! TTATTTGATATTTCTGTAGC+TGG - chr2.3:64568536-64568555 MS.gene00778:intron 25.0%
!! TTGTTTCTTAATACTTTGGT+AGG - chr2.3:64568612-64568631 MS.gene00778:intron 25.0%
!!! AATGTTTTTGCAAGTGTTTT+CGG - chr2.3:64569617-64569636 MS.gene00778:intron 25.0%
!!! TCGTTATATTTGGTTTGTTA+TGG - chr2.3:64568490-64568509 MS.gene00778:intron 25.0%
!!! TTATATTTGGTTTGTTATGG+AGG - chr2.3:64568493-64568512 MS.gene00778:intron 25.0%
AAAATGCCACTCAATATCTT+CGG + chr2.3:64567974-64567993 None:intergenic 30.0%
AATAAAGTTAAGCCTCTTCT+TGG - chr2.3:64568012-64568031 MS.gene00778:intron 30.0%
ACAAACTTCACTTCTACATT+TGG + chr2.3:64569929-64569948 None:intergenic 30.0%
ACCTCATTCTTTGGTATATT+CGG - chr2.3:64569839-64569858 MS.gene00778:intron 30.0%
AGTGATAGTAGATTCTGAAT+TGG + chr2.3:64569325-64569344 None:intergenic 30.0%
ATCACTTGATAAAGATGACT+TGG - chr2.3:64569339-64569358 MS.gene00778:CDS 30.0%
GAACATGTTTGGTATCAAAA+TGG + chr2.3:64568280-64568299 None:intergenic 30.0%
GGATATAGGTTCGTTATATT+TGG - chr2.3:64568480-64568499 MS.gene00778:intron 30.0%
TAAAATGACATACCAAGAAG+AGG + chr2.3:64568027-64568046 None:intergenic 30.0%
! ACTATTTCTTCTTCTTATGG+TGG + chr2.3:64569433-64569452 None:intergenic 30.0%
! ATCTACCCCAGAAAATTTTA+AGG - chr2.3:64569798-64569817 MS.gene00778:intron 30.0%
! GATATTGAGTGGCATTTTAT+TGG - chr2.3:64567976-64567995 MS.gene00778:CDS 30.0%
! TCGTCACCTTAAAATTTTCT+GGG + chr2.3:64569807-64569826 None:intergenic 30.0%
!!! TAAAGATGACTTGGTTTTGT+TGG - chr2.3:64569348-64569367 MS.gene00778:CDS 30.0%
AAATGCCACTCAATATCTTC+GGG + chr2.3:64567973-64567992 None:intergenic 35.0%
AATTGGCTAGCAAATCTATC+AGG + chr2.3:64569308-64569327 None:intergenic 35.0%
ACAATGCTTCACCTTGATTT+CGG - chr2.3:64568249-64568268 MS.gene00778:intron 35.0%
ACCGAATATACCAAAGAATG+AGG + chr2.3:64569843-64569862 None:intergenic 35.0%
ATAAAGTTTACATCTGGGAG+TGG - chr2.3:64568712-64568731 MS.gene00778:intron 35.0%
ATGTAGAAGTGAAGTTTGTG+AGG - chr2.3:64569930-64569949 MS.gene00778:CDS 35.0%
ATTCAAGTCAGTAGTTAGTG+TGG + chr2.3:64568958-64568977 None:intergenic 35.0%
CGGTATTCATTATCTAGTCT+TGG - chr2.3:64569859-64569878 MS.gene00778:intron 35.0%
TAGATGATAAAGTGCGTGTT+TGG - chr2.3:64568202-64568221 MS.gene00778:CDS 35.0%
TCATTAGGCCACAAAATTCA+AGG + chr2.3:64569756-64569775 None:intergenic 35.0%
TGCTTGATTTAAGAGTTTGC+AGG - chr2.3:64569546-64569565 MS.gene00778:intron 35.0%
TTTGTTGAAGTGAACACAAG+CGG - chr2.3:64569264-64569283 MS.gene00778:intron 35.0%
! CGTCACCTTAAAATTTTCTG+GGG + chr2.3:64569806-64569825 None:intergenic 35.0%
! GGGACTATTTCTTCTTCTTA+TGG + chr2.3:64569436-64569455 None:intergenic 35.0%
! GTCGTCACCTTAAAATTTTC+TGG + chr2.3:64569808-64569827 None:intergenic 35.0%
! TTTTGTGGCCTAATGACAAT+TGG - chr2.3:64569760-64569779 MS.gene00778:intron 35.0%
!! AAATGGTTTTGCCGAAATCA+AGG + chr2.3:64568263-64568282 None:intergenic 35.0%
!! TGAGTTTAGGTGTTTTAAGC+TGG - chr2.3:64568099-64568118 MS.gene00778:intron 35.0%
!! TGCATTTTGACCTCATTCTT+TGG - chr2.3:64569830-64569849 MS.gene00778:intron 35.0%
!! TGTTTGGCTTGTATATGCAA+TGG - chr2.3:64568415-64568434 MS.gene00778:intron 35.0%
!!! AAGGTGAAGCATTGTGATTT+TGG + chr2.3:64568244-64568263 None:intergenic 35.0%
ACTCTCTACATAAGCAAGGT+TGG + chr2.3:64568567-64568586 None:intergenic 40.0%
AGGATTGGAACCGCAATATT+TGG - chr2.3:64570125-64570144 MS.gene00778:CDS 40.0%
AGGCCACAAAATTCAAGGTT+TGG + chr2.3:64569751-64569770 None:intergenic 40.0%
AGTGGAATATACACTGGACA+CGG - chr2.3:64568730-64568749 MS.gene00778:intron 40.0%
ATACTTTGGTAGGGAAGAGA+AGG - chr2.3:64568622-64568641 MS.gene00778:intron 40.0%
ATGACATCATCATTACAGGG+CGG - chr2.3:64567748-64567767 MS.gene00778:CDS 40.0%
CTCTCTACATAAGCAAGGTT+GGG + chr2.3:64568566-64568585 None:intergenic 40.0%
CTTGAAGCCTTAAACACACT+TGG + chr2.3:64568660-64568679 None:intergenic 40.0%
GGCCACAAAATTCAAGGTTT+GGG + chr2.3:64569750-64569769 None:intergenic 40.0%
! AGATGGGAAGTACAACTGTT+AGG - chr2.3:64570105-64570124 MS.gene00778:CDS 40.0%
! CAATGGTTTCCTGCCAATTT+TGG + chr2.3:64569238-64569257 None:intergenic 40.0%
! GGAAGTACAACTGTTAGGAT+TGG - chr2.3:64570110-64570129 MS.gene00778:CDS 40.0%
! TGCCCAAACCTTGAATTTTG+TGG - chr2.3:64569745-64569764 MS.gene00778:intron 40.0%
!! ATCACTGATTCCAGCATCAT+AGG - chr2.3:64569486-64569505 MS.gene00778:intron 40.0%
!!! TTTCCTGCCAATTTTGGCTA+TGG + chr2.3:64569232-64569251 None:intergenic 40.0%
ACACAAGCGGAGAAACATGT+AGG - chr2.3:64569277-64569296 MS.gene00778:intron 45.0%
ACCGAGACGTGAAAGAAATC+CGG - chr2.3:64567830-64567849 MS.gene00778:intron 45.0%
AGCACAATGTGAGCTGTCAA+TGG - chr2.3:64569969-64569988 MS.gene00778:CDS 45.0%
AGCTTCCCGAAGATATTGAG+TGG - chr2.3:64567965-64567984 MS.gene00778:CDS 45.0%
ATTCACGCTACCTATGATGC+TGG + chr2.3:64569499-64569518 None:intergenic 45.0%
CAGACTTTGAGCAAGCTGTA+AGG - chr2.3:64570001-64570020 MS.gene00778:CDS 45.0%
CCAGCATGCCAATTGTCATT+AGG + chr2.3:64569771-64569790 None:intergenic 45.0%
CCTAATGACAATTGGCATGC+TGG - chr2.3:64569768-64569787 MS.gene00778:intron 45.0%
CGAAGTCAGTTTCTATGCTC+CGG - chr2.3:64567872-64567891 MS.gene00778:intron 45.0%
CGACACTCTCTACATAAGCA+AGG + chr2.3:64568571-64568590 None:intergenic 45.0%
CGTAATTCTCACCGAAGCAA+CGG + chr2.3:64567918-64567937 None:intergenic 45.0%
CTTCGGTGAGAATTACGTTC+AGG - chr2.3:64567921-64567940 MS.gene00778:CDS 45.0%
GAAGTCAGTTTCTATGCTCC+GGG - chr2.3:64567873-64567892 MS.gene00778:intron 45.0%
GCACAATGTGAGCTGTCAAT+GGG - chr2.3:64569970-64569989 MS.gene00778:CDS 45.0%
GTTAGTGTGGCACACATCTA+AGG + chr2.3:64568945-64568964 None:intergenic 45.0%
TCAATATCTTCGGGAAGCTG+AGG + chr2.3:64567964-64567983 None:intergenic 45.0%
TCTGGGAGTGGAATATACAC+TGG - chr2.3:64568724-64568743 MS.gene00778:intron 45.0%
TTCTTTCGGTGGATACTCTC+TGG + chr2.3:64570153-64570172 None:intergenic 45.0%
! AGTGAAGTTTGTGAGGCACT+TGG - chr2.3:64569937-64569956 MS.gene00778:CDS 45.0%
! CTCTCTGGCTCCAAATATTG+CGG + chr2.3:64570138-64570157 None:intergenic 45.0%
ACAAGGTCTAGACACTGTGC+TGG + chr2.3:64569706-64569725 None:intergenic 50.0%
AGACGTGAAAGAAATCCGGG+TGG - chr2.3:64567834-64567853 MS.gene00778:intron 50.0%
CCCGGATTTCTTTCACGTCT+CGG + chr2.3:64567834-64567853 None:intergenic 50.0%
CCGAGACGTGAAAGAAATCC+GGG - chr2.3:64567831-64567850 MS.gene00778:intron 50.0%
GATCGCGCCATAGCCAAAAT+TGG - chr2.3:64569222-64569241 MS.gene00778:intron 50.0%
!! AGAGAGTGTCGACGATGAGA+AGG - chr2.3:64568580-64568599 MS.gene00778:intron 50.0%
CGTGAAAGAAATCCGGGTGG+TGG - chr2.3:64567837-64567856 MS.gene00778:intron 55.0%
GCGCCATAGCCAAAATTGGC+AGG - chr2.3:64569226-64569245 MS.gene00778:intron 55.0%
GTCAGTTTCTATGCTCCGGG+AGG - chr2.3:64567876-64567895 MS.gene00778:intron 55.0%
TGGCTATGGCGCGATCAAGA+AGG + chr2.3:64569218-64569237 None:intergenic 55.0%
! CACGTCTCGGTTCGATCTCT+CGG + chr2.3:64567821-64567840 None:intergenic 55.0%
! GAAAGAAATCCGGGTGGTGG+CGG - chr2.3:64567840-64567859 MS.gene00778:intron 55.0%
ATCATTACAGGGCGGCGCAG+CGG - chr2.3:64567756-64567775 MS.gene00778:CDS 60.0%
CTCACCGAAGCAACGGTGTC+CGG + chr2.3:64567911-64567930 None:intergenic 60.0%
! GTCTCGGTTCGATCTCTCGG+CGG + chr2.3:64567818-64567837 None:intergenic 60.0%
GACGCCGGACACCGTTGCTT+CGG - chr2.3:64567904-64567923 MS.gene00778:intron 65.0%
GTCCGGCGTCATACACCTCC+CGG + chr2.3:64567894-64567913 None:intergenic 65.0%
TCTTACTCGCCGCCACCACC+CGG + chr2.3:64567852-64567871 None:intergenic 65.0%
! CTCCGGGAGGTGTATGACGC+CGG - chr2.3:64567889-64567908 MS.gene00778:intron 65.0%
CGCAGCGGCGTCGCTAAAGG+CGG - chr2.3:64567771-64567790 MS.gene00778:CDS 70.0%
GGTTCGATCTCTCGGCGGCG+TGG + chr2.3:64567813-64567832 None:intergenic 70.0%
TCGATCTCTCGGCGGCGTGG+TGG + chr2.3:64567810-64567829 None:intergenic 70.0%
CGGCGCAGCGGCGTCGCTAA+AGG - chr2.3:64567768-64567787 MS.gene00778:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 64567748 64570181 64567748 ID=MS.gene00778
chr2.3 mRNA 64567748 64570181 64567748 ID=MS.gene00778.t1;Parent=MS.gene00778
chr2.3 exon 64569896 64570181 64569896 ID=MS.gene00778.t1.exon1;Parent=MS.gene00778.t1
chr2.3 CDS 64569896 64570181 64569896 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
chr2.3 exon 64569328 64569374 64569328 ID=MS.gene00778.t1.exon2;Parent=MS.gene00778.t1
chr2.3 CDS 64569328 64569374 64569328 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
chr2.3 exon 64568635 64568722 64568635 ID=MS.gene00778.t1.exon3;Parent=MS.gene00778.t1
chr2.3 CDS 64568635 64568722 64568635 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
chr2.3 exon 64568110 64568243 64568110 ID=MS.gene00778.t1.exon4;Parent=MS.gene00778.t1
chr2.3 CDS 64568110 64568243 64568110 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
chr2.3 exon 64567912 64568010 64567912 ID=MS.gene00778.t1.exon5;Parent=MS.gene00778.t1
chr2.3 CDS 64567912 64568010 64567912 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
chr2.3 exon 64567748 64567828 64567748 ID=MS.gene00778.t1.exon6;Parent=MS.gene00778.t1
chr2.3 CDS 64567748 64567828 64567748 ID=cds.MS.gene00778.t1;Parent=MS.gene00778.t1
Gene Sequence

>MS.gene00778

ATGACATCATCATTACAGGGCGGCGCAGCGGCGTCGCTAAAGGCGGTGCTCAATCGCGTCCACCACGCCGCCGAGAGATCGAACCGAGACGTGAAAGAAATCCGGGTGGTGGCGGCGAGTAAGACGAAGTCAGTTTCTATGCTCCGGGAGGTGTATGACGCCGGACACCGTTGCTTCGGTGAGAATTACGTTCAGGAAATAATTGAGAAAGCTCCTCAGCTTCCCGAAGATATTGAGTGGCATTTTATTGGGAATTTGCAGAGTAATAAAGTTAAGCCTCTTCTTGGTATGTCATTTTATTTTGATTCTGTTGAATTAATTTGATAATGTTATGTTTAATTTGAAGTGATTTGAGTTTAGGTGTTTTAAGCTGGAAGTAAATTTGATGTGTAACTACTAACTAGTGTAGAACAATCAAAACATAGACATGTGTAGAAGAACTTTACTTTGATTTTAGATGATAAAGTGCGTGTTTGGTATCGCGATAGTTTTGCCAAAATCACAATGCTTCACCTTGATTTCGGCAAAACCATTTTGATACCAAACATGTTCAAACACTAATTAGACTCATAAAGGTACATTTTTTAACTGGTAAAATTTCACTATGATAAGTGATGACATATTTTTGATATATATATATATATACTCTAAAAAATGTTTAATTGTATGTTTGGCTTGTATATGCAATGGAAACTTTGATTGTTACTTAGATTCCACTTTTTTTGTATTTATGGATATAGGTTCGTTATATTTGGTTTGTTATGGAGGAGTCTAATATGTTTTGTTTCTTATTTGATATTTCTGTAGCTGGTGTTCCCAACCTTGCTTATGTAGAGAGTGTCGACGATGAGAAGGTAAATATTTTTGTTTCTTAATACTTTGGTAGGGAAGAGAAGGTAGATATATTTTCCAAGTGTGTTTAAGGCTTCAAGCTAATGAGTACAAATAAAAATGTAAATTTTACATAAAGTTTACATCTGGGAGTGGAATATACACTGGACACGGAAAGAGTTGAAACACAATGATGAATTTTTCATCCTATCATTTTGTGATTTCTCTTGGAAAGTTAAATTGTTTATACATTTGATATTTGATGATGAAAGTAAGTTAAATTGTTTATACATTTGATATTTGATGATGAAAGTAGTCTATATATAGTACAGGTTATTTTTTGACAATAACTTTACAGAAGGGCCTTAGATGTGTGCCACACTAACTACTGACTTGAATTTACTACAACACTGTCATTAGTTATCTATTTCTTACGAATTTTGTTCTGAGAAATATAATTTTATTCAAAATGTTTTAGAAAATAGACTACCCAAAATGTTCTATGAAATAATGCATTTTGGTTTAGTGCAGTCATGATCTTAGCGATTATTTTTTTACTTTTTTTATATTGCATTGCAAATGATGCATGTTCATTTCTGATTTTAGTTCTTTTTTTCTTTGCTAACAGATAGCAAACCTTCTTGATCGCGCCATAGCCAAAATTGGCAGGAAACCATTGAAAGTTTTTGTTGAAGTGAACACAAGCGGAGAAACATGTAGGTTACACCTGATAGATTTGCTAGCCAATTCAGAATCTACTATCACTTGATAAAGATGACTTGGTTTTGTTGGAAGATTATTAACCCAAAATATTTTAACATGGCTTCTAGTAAACTGATATGAAAATAGGACCACCATAAGAAGAAGAAATAGTCCCCGATTCTTTTATAGAAATTTTGTTTATCAAATCACTGATTCCAGCATCATAGGTAGCGTGAATATGTAACCAATATTTATTGTGATGAACTGCTTGATTTAAGAGTTTGCAGGTTTAGAAAATGTGCTATAACTGTTATTCTTTTTGCTGTCTTGTGATAAAATGTTTTTGCAAGTGTTTTCGGTTTGTTTGTGATCTCAAGAATGACAATCAACTGATATTTCTTGCAGCTAAATTTGGTGTTGAACCAGCACAGTGTCTAGACCTTGTAAAATATATTGTTACAAATTGCCCAAACCTTGAATTTTGTGGCCTAATGACAATTGGCATGCTGGATTATTCATCTACCCCAGAAAATTTTAAGGTGACGACTATGCATTTTGACCTCATTCTTTGGTATATTCGGTATTCATTATCTAGTCTTGGTAATTCTCCAAACTAAATTTTATTTTGTGCATTCTAGACATTATCCAAATGTAGAAGTGAAGTTTGTGAGGCACTTGGAATATCAGAAGCACAATGTGAGCTGTCAATGGGAATGACTGCAGACTTTGAGCAAGCTGTAAGGAATAGTTTTTTTAAAAAATACACGGATTACACAATGTCGTTACATTTCTTTAACTCGAGAACACTCTAATTTTGTAGATTGAGATGGGAAGTACAACTGTTAGGATTGGAACCGCAATATTTGGAGCCAGAGAGTATCCACCGAAAGAAGAGAAGTAG
Protein sequence

>MS.gene00778.t1

MTSSLQGGAAASLKAVLNRVHHAAERSNRDVKEIRVVAASKTKSVSMLREVYDAGHRCFGENYVQEIIEKAPQLPEDIEWHFIGNLQSNKVKPLLAGVPNLAYVESVDDEKIANLLDRAIAKIGRKPLKVFVEVNTSGETSKFGVEPAQCLDLVKYIVTNCPNLEFCGLMTIGMLDYSSTPENFKTLSKCRSEVCEALGISEAQCELSMGMTADFEQAIEMGSTTVRIGTAIFGAREYPPKEEK