AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027021

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027021.t1 MTR_8g043650 85.654 237 34 0 1 237 1 237 1.19e-153 426
MS.gene027021.t1 MTR_3g052920 91.284 218 19 0 1 218 1 218 6.19e-150 417
MS.gene027021.t1 MTR_1g105920 89.450 218 23 0 1 218 1 218 2.23e-147 410
MS.gene027021.t1 MTR_2g030740 88.186 237 28 0 1 237 1 237 7.04e-147 409
MS.gene027021.t1 MTR_1g105910 85.654 237 34 0 1 237 1 237 4.96e-145 404
MS.gene027021.t1 MTR_1g012570 84.388 237 37 0 1 237 1 237 4.84e-139 389
MS.gene027021.t1 MTR_3g052870 82.648 219 19 1 1 219 1 200 6.28e-130 365
MS.gene027021.t1 MTR_1g105905 77.727 220 49 0 18 237 1 220 1.07e-128 363
MS.gene027021.t1 MTR_1g106070 86.339 183 25 0 1 183 1 183 8.87e-119 336
MS.gene027021.t1 MTR_0121s0080 70.464 237 69 1 1 237 1 236 1.58e-118 337
MS.gene027021.t1 MTR_1g108510 72.766 235 46 3 1 225 1 227 3.23e-118 337
MS.gene027021.t1 MTR_3g030770 71.489 235 49 3 1 225 1 227 8.09e-117 333
MS.gene027021.t1 MTR_1g075600 69.778 225 68 0 1 225 1 225 7.92e-115 328
MS.gene027021.t1 MTR_2g085280 65.678 236 81 0 1 236 1 236 2.56e-114 327
MS.gene027021.t1 MTR_2g085250 65.678 236 81 0 1 236 1 236 6.85e-114 326
MS.gene027021.t1 MTR_5g055100 64.557 237 84 0 1 237 1 237 2.11e-113 325
MS.gene027021.t1 MTR_2g093190 70.638 235 51 3 1 225 1 227 2.61e-112 322
MS.gene027021.t1 MTR_1g077360 68.000 225 72 0 1 225 1 225 4.06e-112 321
MS.gene027021.t1 MTR_1g108580 71.622 222 53 2 1 220 1 214 2.13e-110 317
MS.gene027021.t1 MTR_5g045560 66.667 237 79 0 1 237 1 237 5.97e-107 308
MS.gene027021.t1 MTR_5g053390 66.222 225 76 0 1 225 1 225 8.34e-106 305
MS.gene027021.t1 MTR_7g062350 67.290 214 69 1 24 237 36 248 1.90e-101 295
MS.gene027021.t1 MTR_0121s0100 76.515 132 31 0 1 132 1 132 3.98e-68 206
MS.gene027021.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 2.88e-66 201
MS.gene027021.t1 MTR_1g075570 62.360 178 53 1 18 195 1 164 1.68e-65 200
MS.gene027021.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 6.08e-63 196
MS.gene027021.t1 MTR_3g067910 70.588 102 30 0 21 122 2 103 7.30e-47 151
MS.gene027021.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 4.00e-40 136
MS.gene027021.t1 MTR_2g105290 38.728 173 96 2 5 174 8 173 1.48e-39 135
MS.gene027021.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 4.63e-34 120
MS.gene027021.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 4.63e-34 120
MS.gene027021.t1 MTR_1g108500 43.931 173 53 4 8 158 94 244 1.02e-31 119
MS.gene027021.t1 MTR_4g127140 37.500 184 95 4 5 175 8 184 1.37e-30 112
MS.gene027021.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 2.22e-27 100
MS.gene027021.t1 MTR_3g067915 53.191 94 44 0 33 126 3 96 1.12e-25 96.7
MS.gene027021.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.22e-24 96.7
MS.gene027021.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 2.52e-24 95.9
MS.gene027021.t1 MTR_8g046350 40.909 132 66 3 9 135 2 126 1.23e-23 93.6
MS.gene027021.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.36e-23 94.7
MS.gene027021.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.76e-23 93.2
MS.gene027021.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.97e-23 93.6
MS.gene027021.t1 MTR_8g051580 46.535 101 52 1 9 109 2 100 2.11e-23 93.2
MS.gene027021.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 2.24e-23 92.8
MS.gene027021.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 8.97e-21 85.9
MS.gene027021.t1 MTR_4g093970 34.545 165 85 3 10 153 29 191 7.79e-20 85.5
MS.gene027021.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 3.73e-19 83.2
MS.gene027021.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 6.59e-19 82.8
MS.gene027021.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.53e-18 80.5
MS.gene027021.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 3.16e-18 80.1
MS.gene027021.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 3.99e-18 80.9
MS.gene027021.t1 MTR_3g102570 37.795 127 71 4 9 129 2 126 4.93e-18 81.6
MS.gene027021.t1 MTR_8g022970 33.333 171 101 3 8 172 17 180 9.67e-18 78.6
MS.gene027021.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.44e-17 79.0
MS.gene027021.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.24e-17 79.0
MS.gene027021.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.38e-17 78.2
MS.gene027021.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 4.15e-17 78.2
MS.gene027021.t1 MTR_5g032520 28.638 213 128 6 9 201 2 210 6.49e-17 77.0
MS.gene027021.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.20e-16 75.5
MS.gene027021.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.31e-16 76.3
MS.gene027021.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.31e-16 76.6
MS.gene027021.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.31e-16 76.6
MS.gene027021.t1 MTR_8g033220 31.395 172 89 5 10 179 3 147 1.63e-16 75.9
MS.gene027021.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.75e-16 75.9
MS.gene027021.t1 MTR_8g033220 31.395 172 89 5 10 179 3 147 1.85e-16 75.9
MS.gene027021.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.55e-16 75.9
MS.gene027021.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 5.11e-16 75.1
MS.gene027021.t1 MTR_3g437790 33.813 139 83 4 26 159 30 164 6.82e-16 73.6
MS.gene027021.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 7.98e-16 75.9
MS.gene027021.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 8.57e-16 69.7
MS.gene027021.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.09e-15 74.3
MS.gene027021.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.27e-15 73.9
MS.gene027021.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.45e-15 73.6
MS.gene027021.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.52e-15 73.6
MS.gene027021.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.55e-15 73.6
MS.gene027021.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 3.00e-15 72.4
MS.gene027021.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.22e-15 72.4
MS.gene027021.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.51e-15 69.3
MS.gene027021.t1 MTR_5g021270 35.714 126 71 2 9 134 2 117 5.58e-15 72.0
MS.gene027021.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.95e-15 72.0
MS.gene027021.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.89e-14 70.9
MS.gene027021.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene027021.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.17e-14 70.1
MS.gene027021.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.52e-14 68.9
MS.gene027021.t1 MTR_3g109930 31.973 147 96 2 27 172 20 163 3.62e-14 68.6
MS.gene027021.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 4.86e-14 69.7
MS.gene027021.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 5.70e-14 69.3
MS.gene027021.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.75e-14 68.2
MS.gene027021.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.08e-14 69.3
MS.gene027021.t1 MTR_4g109810 50.877 57 28 0 9 65 2 58 9.58e-14 68.9
MS.gene027021.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.02e-13 67.8
MS.gene027021.t1 MTR_4g108720 28.144 167 102 8 9 163 2 162 2.75e-12 65.9
MS.gene027021.t1 MTR_4g093030 47.541 61 32 0 9 69 2 62 2.95e-12 63.2
MS.gene027021.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.04e-11 61.2
MS.gene027021.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.19e-11 61.2
MS.gene027021.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.26e-11 61.2
MS.gene027021.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.35e-11 61.6
MS.gene027021.t1 MTR_4g051538 32.867 143 85 2 5 147 5 136 3.96e-11 61.2
MS.gene027021.t1 MTR_1g041615 36.449 107 59 2 20 125 17 115 4.08e-11 59.3
MS.gene027021.t1 MTR_2g045020 29.630 162 88 7 7 159 21 165 8.06e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027021.t1 AT5G60440 53.723 188 80 3 5 189 3 186 6.59e-62 196
MS.gene027021.t1 AT2G24840 49.080 163 72 4 6 162 60 217 8.75e-44 148
MS.gene027021.t1 AT1G01530 42.188 192 99 4 4 192 2 184 3.48e-41 141
MS.gene027021.t1 AT1G65360 41.053 190 103 5 5 192 3 185 5.92e-41 140
MS.gene027021.t1 AT4G36590 46.341 164 78 4 5 160 3 164 4.46e-39 135
MS.gene027021.t1 AT2G34440 36.970 165 94 3 9 169 2 160 1.33e-28 106
MS.gene027021.t1 AT3G66656 43.697 119 63 1 9 123 2 120 1.02e-25 99.4
MS.gene027021.t1 AT3G04100 34.356 163 101 4 2 159 7 168 3.14e-25 99.0
MS.gene027021.t1 AT1G72350 56.164 73 30 1 9 81 43 113 1.10e-21 90.1
MS.gene027021.t1 AT1G28460 28.571 161 111 2 5 163 4 162 4.87e-20 84.7
MS.gene027021.t1 AT4G22950 50.649 77 38 0 10 86 3 79 1.05e-19 83.6
MS.gene027021.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.57e-19 83.6
MS.gene027021.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.57e-19 83.6
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.99e-19 83.2
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.81e-19 83.2
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.88e-19 83.2
MS.gene027021.t1 AT4G18960 31.535 241 133 10 5 226 15 242 4.30e-19 83.6
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 12 97 4.69e-19 83.2
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.27e-19 83.2
MS.gene027021.t1 AT2G45660 52.941 68 32 0 10 77 3 70 8.33e-19 80.9
MS.gene027021.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.03e-18 82.8
MS.gene027021.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.10e-18 82.8
MS.gene027021.t1 AT2G45660 52.941 68 32 0 10 77 3 70 2.80e-18 80.5
MS.gene027021.t1 AT1G29962 28.743 167 103 4 5 165 4 160 1.37e-17 78.2
MS.gene027021.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.78e-17 79.0
MS.gene027021.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.78e-17 79.0
MS.gene027021.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.67e-17 77.0
MS.gene027021.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.13e-17 78.6
MS.gene027021.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.16e-17 78.6
MS.gene027021.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.54e-17 75.9
MS.gene027021.t1 AT3G61120 51.471 68 33 0 9 76 2 69 3.84e-17 78.2
MS.gene027021.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.01e-17 77.4
MS.gene027021.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.25e-17 78.2
MS.gene027021.t1 AT3G58780 50.704 71 35 0 6 76 20 90 4.64e-17 78.2
MS.gene027021.t1 AT4G24540 51.471 68 33 0 9 76 2 69 5.02e-17 77.4
MS.gene027021.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.17e-17 77.0
MS.gene027021.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.13e-17 77.0
MS.gene027021.t1 AT5G51870 53.731 67 31 0 10 76 13 79 8.19e-17 77.0
MS.gene027021.t1 AT3G58780 50.704 71 35 0 6 76 14 84 8.83e-17 77.8
MS.gene027021.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.72e-17 75.5
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.00e-16 73.6
MS.gene027021.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.08e-16 76.6
MS.gene027021.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.37e-16 77.0
MS.gene027021.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.40e-16 77.8
MS.gene027021.t1 AT4G37940 47.368 76 39 1 9 83 2 77 1.42e-16 76.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.42e-16 74.7
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.42e-16 74.7
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.42e-16 74.7
MS.gene027021.t1 AT4G37940 47.368 76 39 1 9 83 2 77 1.43e-16 76.3
MS.gene027021.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.46e-16 75.1
MS.gene027021.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.49e-16 75.5
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027021.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.78e-16 75.1
MS.gene027021.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.78e-16 75.1
MS.gene027021.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.81e-16 75.5
MS.gene027021.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.95e-16 76.6
MS.gene027021.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.99e-16 75.1
MS.gene027021.t1 AT1G77980 38.095 105 64 1 9 112 2 106 2.12e-16 77.4
MS.gene027021.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.14e-16 76.3
MS.gene027021.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.14e-16 76.3
MS.gene027021.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.56e-16 76.3
MS.gene027021.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.98e-16 75.1
MS.gene027021.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.98e-16 75.1
MS.gene027021.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.25e-16 74.7
MS.gene027021.t1 AT1G17310 53.165 79 35 1 8 86 47 123 4.86e-16 74.7
MS.gene027021.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.11e-16 75.1
MS.gene027021.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.65e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.68e-16 73.9
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.68e-16 73.9
MS.gene027021.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.96e-16 75.1
MS.gene027021.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.96e-16 75.1
MS.gene027021.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.96e-16 75.1
MS.gene027021.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.96e-16 75.1
MS.gene027021.t1 AT1G17310 53.165 79 35 1 8 86 58 134 6.25e-16 74.7
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.41e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.41e-16 74.3
MS.gene027021.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.41e-16 74.3
MS.gene027021.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.88e-16 74.3
MS.gene027021.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.88e-16 74.3
MS.gene027021.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.28e-16 74.7
MS.gene027021.t1 AT1G26310 47.826 69 35 1 9 76 2 70 9.86e-16 74.7
MS.gene027021.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.06e-15 74.3
MS.gene027021.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.12e-15 74.3
MS.gene027021.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.58e-15 73.6
MS.gene027021.t1 AT5G15800 29.167 240 129 9 9 224 2 224 2.20e-15 73.6
MS.gene027021.t1 AT1G28450 26.786 168 117 4 5 166 4 171 2.72e-15 72.0
MS.gene027021.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.60e-15 73.2
MS.gene027021.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.53e-15 70.5
MS.gene027021.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.94e-15 72.4
MS.gene027021.t1 AT2G22540 50.000 68 29 1 9 76 2 64 5.71e-15 72.0
MS.gene027021.t1 AT2G14210 46.377 69 36 1 9 76 2 70 6.45e-15 72.0
MS.gene027021.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.01e-15 71.2
MS.gene027021.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.29e-14 70.1
MS.gene027021.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.34e-14 71.6
MS.gene027021.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.44e-14 71.2
MS.gene027021.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.47e-14 70.5
MS.gene027021.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.94e-14 70.9
MS.gene027021.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.37e-14 70.5
MS.gene027021.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.48e-14 69.3
MS.gene027021.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.57e-14 70.5
MS.gene027021.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.65e-14 69.3
MS.gene027021.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.73e-14 70.9
MS.gene027021.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.85e-14 69.3
MS.gene027021.t1 AT1G24260 41.237 97 54 1 9 105 2 95 3.52e-14 70.1
MS.gene027021.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.64e-14 68.9
MS.gene027021.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.25e-14 68.9
MS.gene027021.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.26e-14 70.1
MS.gene027021.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.82e-14 68.6
MS.gene027021.t1 AT1G24260 41.237 97 54 1 9 105 2 95 5.36e-14 69.7
MS.gene027021.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.57e-14 68.6
MS.gene027021.t1 AT1G47760 34.483 116 61 3 9 123 2 103 6.04e-14 68.2
MS.gene027021.t1 AT1G24260 46.377 69 36 1 9 76 2 70 7.22e-14 69.3
MS.gene027021.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.68e-14 69.3
MS.gene027021.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.29e-14 68.9
MS.gene027021.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.70e-13 67.8
MS.gene027021.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.17e-13 65.9
MS.gene027021.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.79e-13 66.2
MS.gene027021.t1 AT5G65070 42.029 69 39 1 9 76 2 70 8.79e-13 65.5
MS.gene027021.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.25e-13 65.9
MS.gene027021.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.70e-12 65.5
MS.gene027021.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.83e-12 65.5
MS.gene027021.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.83e-12 65.5
MS.gene027021.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.83e-12 65.5
MS.gene027021.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.28e-12 63.9
MS.gene027021.t1 AT1G18750 38.667 75 44 1 9 81 2 76 5.12e-12 65.1
MS.gene027021.t1 AT1G18750 26.733 202 124 7 9 188 2 201 5.14e-12 65.1
MS.gene027021.t1 AT1G18750 38.961 77 44 2 9 83 2 77 5.40e-12 65.1
MS.gene027021.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.01e-11 63.9
MS.gene027021.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.18e-11 63.9
MS.gene027021.t1 AT1G46408 33.613 119 70 4 10 119 5 123 1.77e-11 62.8
MS.gene027021.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.27e-11 61.2
MS.gene027021.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.50e-11 61.2
MS.gene027021.t1 AT2G26320 40.000 70 40 1 9 76 18 87 2.88e-11 59.3
MS.gene027021.t1 AT5G27130 40.000 85 47 2 2 82 6 90 7.03e-11 61.2
MS.gene027021.t1 AT5G65080 48.148 54 28 0 9 62 9 62 7.33e-11 60.1

Find 63 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.224208 3.4:+49750254 MS.gene027021:CDS
TTGGTTTGGCTTCACCAATA+TGG 0.275231 3.4:+49750525 MS.gene027021:CDS
TGGTTTGGCTTCACCAATAT+GGG 0.312769 3.4:+49750526 MS.gene027021:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.4:-49750460 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.4:+49750353 MS.gene027021:CDS
TGGTGGGCAGGTCCCATTGA+TGG 0.375461 3.4:+49750274 MS.gene027021:CDS
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.4:+49750511 MS.gene027021:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3.4:+49750506 MS.gene027021:CDS
GTCCCATTGATGGGATGAAT+CGG 0.423242 3.4:+49750284 MS.gene027021:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3.4:-49750201 None:intergenic
GGTGGGCAGGTCCCATTGAT+GGG 0.441555 3.4:+49750275 MS.gene027021:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 3.4:-49750070 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.4:-49750308 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.4:+49750315 MS.gene027021:CDS
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.4:-49750287 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.4:-49750450 None:intergenic
AGCCACTTGTGCAAGACGGC+CGG 0.462215 3.4:+49750241 MS.gene027021:CDS
GCCACTTGTGCAAGACGGCC+GGG 0.485933 3.4:+49750242 MS.gene027021:CDS
TCCCGGCCGTCTTGCACAAG+TGG 0.492110 3.4:-49750243 None:intergenic
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3.4:-49750487 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3.4:-49750071 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.4:-49750286 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3.4:-49750507 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.4:+49750189 MS.gene027021:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.4:-49750309 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.517878 3.4:+49750285 MS.gene027021:CDS
ATGATGGAGAGGCATGTTTG+AGG 0.521462 3.4:-49750434 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.4:-49749987 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.4:-49750508 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 3.4:-49750161 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.4:-49750469 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.4:-49750153 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.4:+49750309 MS.gene027021:CDS
TGCCCACCAAAATTGAGTCC+CGG 0.536645 3.4:-49750260 None:intergenic
GGGCTCGGATCAAAAGAATC+CGG 0.538178 3.4:-49750572 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 3.4:+49750063 MS.gene027021:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.4:-49750040 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.4:+49749951 MS.gene027021:CDS
GGTTTGGCTTCACCAATATG+GGG 0.558106 3.4:+49750527 MS.gene027021:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 3.4:+49750553 MS.gene027021:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3.4:+49750086 MS.gene027021:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.4:+49749950 MS.gene027021:CDS
GTTTGGCTTCACCAATATGG+GGG 0.574639 3.4:+49750528 MS.gene027021:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.4:+49749989 MS.gene027021:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.4:-49750002 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.4:+49749864 None:intergenic
TTTGGCTTCACCAATATGGG+GGG 0.603031 3.4:+49750529 MS.gene027021:CDS
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.4:+49749860 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.4:-49749964 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.4:-49750466 None:intergenic
GCTGAGCCACTTGTGCAAGA+CGG 0.626924 3.4:+49750237 MS.gene027021:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.4:+49750126 MS.gene027021:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.4:-49750131 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.4:-49750445 None:intergenic
CGGATCCCACCTCAAAACAA+TGG 0.654288 3.4:+49750106 MS.gene027021:CDS
AGGTTTGAGTAGGAGCACCA+TGG 0.654428 3.4:-49750384 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 3.4:-49750569 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 3.4:-49750066 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 3.4:-49750568 None:intergenic
TTGGTGAAGCCAAACCAATG+AGG 0.703086 3.4:-49750520 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.4:+49749875 MS.gene027021:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3.4:-49750069 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3.4:-49750003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.4:49749904-49749923 None:intergenic 20.0%
! GAATTGTTTCCAAGAAAAAA+TGG - chr3.4:49750412-49750431 None:intergenic 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.4:49750311-49750330 None:intergenic 25.0%
AAAAATGGAAAGGTTTGAGT+AGG - chr3.4:49750397-49750416 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.4:49750309-49750328 MS.gene027021:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.4:49750312-49750331 None:intergenic 30.0%
GTTTCCAAGAAAAAATGGAA+AGG - chr3.4:49750407-49750426 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.4:49750086-49750105 MS.gene027021:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.4:49750353-49750372 MS.gene027021:CDS 30.0%
!!! CAAACCTTTCCATTTTTTCT+TGG + chr3.4:49750400-49750419 MS.gene027021:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG - chr3.4:49750074-49750093 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr3.4:49750073-49750092 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.4:49750315-49750334 MS.gene027021:CDS 35.0%
!! GTTGATAGGCTTTTAATCCA+TGG + chr3.4:49750367-49750386 MS.gene027021:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.4:49750511-49750530 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.4:49750043-49750062 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.4:49750510-49750529 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG - chr3.4:49750072-49750091 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.4:49750126-49750145 MS.gene027021:CDS 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.4:49750511-49750530 MS.gene027021:CDS 40.0%
! TGGTTTGGCTTCACCAATAT+GGG + chr3.4:49750526-49750545 MS.gene027021:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+AGG - chr3.4:49750118-49750137 None:intergenic 40.0%
!! TTGGTTTGGCTTCACCAATA+TGG + chr3.4:49750525-49750544 MS.gene027021:CDS 40.0%
!!! ATGGTACCATTGTTTTGAGG+TGG - chr3.4:49750115-49750134 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.4:49750043-49750062 MS.gene027021:CDS 40.0%
!!! TGGTACCATTGTTTTGAGGT+GGG - chr3.4:49750114-49750133 None:intergenic 40.0%
ACCCTATGTTGCAACCTCAT+TGG + chr3.4:49750506-49750525 MS.gene027021:CDS 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.4:49750463-49750482 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.4:49749967-49749986 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.4:49750284-49750303 MS.gene027021:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.4:49750134-49750153 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.4:49750285-49750304 MS.gene027021:CDS 45.0%
TTGGTGAAGCCAAACCAATG+AGG - chr3.4:49750523-49750542 None:intergenic 45.0%
! ATGATGGAGAGGCATGTTTG+AGG - chr3.4:49750437-49750456 None:intergenic 45.0%
! GGGTTCTGATAAAACTGTGC+TGG - chr3.4:49750490-49750509 None:intergenic 45.0%
! GGTTTGGCTTCACCAATATG+GGG + chr3.4:49750527-49750546 MS.gene027021:CDS 45.0%
! GTTTGGCTTCACCAATATGG+GGG + chr3.4:49750528-49750547 MS.gene027021:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.4:49749895-49749914 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.4:49750030-49750049 MS.gene027021:CDS 45.0%
! TTTGGCTTCACCAATATGGG+GGG + chr3.4:49750529-49750548 MS.gene027021:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.4:49750448-49750467 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.4:49750453-49750472 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.4:49750005-49750024 None:intergenic 50.0%
CGGATCCCACCTCAAAACAA+TGG + chr3.4:49750106-49750125 MS.gene027021:CDS 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.4:49750189-49750208 MS.gene027021:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.4:49750289-49750308 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.4:49749875-49749894 MS.gene027021:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.4:49750204-49750223 None:intergenic 50.0%
TGACCGTATCAACATTGGGG+TGG - chr3.4:49750069-49750088 None:intergenic 50.0%
TGCCCACCAAAATTGAGTCC+CGG - chr3.4:49750263-49750282 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG + chr3.4:49750063-49750082 MS.gene027021:CDS 50.0%
!! AGGTTTGAGTAGGAGCACCA+TGG - chr3.4:49750387-49750406 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.4:49750022-49750041 MS.gene027021:CDS 50.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.4:49749989-49750008 MS.gene027021:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.4:49750006-49750025 None:intergenic 55.0%
GCTGAGCCACTTGTGCAAGA+CGG + chr3.4:49750237-49750256 MS.gene027021:CDS 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.4:49750290-49750309 None:intergenic 55.0%
TTCACCAATATGGGGGGAGG+AGG + chr3.4:49750535-49750554 MS.gene027021:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.4:49749990-49750009 None:intergenic 55.0%
! AGACGGCCGGGACTCAATTT+TGG + chr3.4:49750254-49750273 MS.gene027021:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.4:49750164-49750183 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.4:49749950-49749969 MS.gene027021:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.4:49749951-49749970 MS.gene027021:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.4:49750472-49750491 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.4:49750469-49750488 None:intergenic 55.0%
!! GGCCGGGACTCAATTTTGGT+GGG + chr3.4:49750258-49750277 MS.gene027021:CDS 55.0%
!! GGGACTCAATTTTGGTGGGC+AGG + chr3.4:49750262-49750281 MS.gene027021:CDS 55.0%
ACCAATATGGGGGGAGGAGG+TGG + chr3.4:49750538-49750557 MS.gene027021:CDS 60.0%
AGCCACTTGTGCAAGACGGC+CGG + chr3.4:49750241-49750260 MS.gene027021:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.4:49750544-49750563 MS.gene027021:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr3.4:49750553-49750572 MS.gene027021:CDS 60.0%
GGCTTCACCAATATGGGGGG+AGG + chr3.4:49750532-49750551 MS.gene027021:CDS 60.0%
GGTGGGCAGGTCCCATTGAT+GGG + chr3.4:49750275-49750294 MS.gene027021:CDS 60.0%
TCCACCTCCTCCCCCCATAT+TGG - chr3.4:49750542-49750561 None:intergenic 60.0%
! CGGCCGGGACTCAATTTTGG+TGG + chr3.4:49750257-49750276 MS.gene027021:CDS 60.0%
! TGGTGGGCAGGTCCCATTGA+TGG + chr3.4:49750274-49750293 MS.gene027021:CDS 60.0%
GCCACTTGTGCAAGACGGCC+GGG + chr3.4:49750242-49750261 MS.gene027021:CDS 65.0%
TCCCGGCCGTCTTGCACAAG+TGG - chr3.4:49750246-49750265 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.4:49750156-49750175 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 49749872 49750585 49749872 ID=MS.gene027021
chr3.4 mRNA 49749872 49750585 49749872 ID=MS.gene027021.t1;Parent=MS.gene027021
chr3.4 exon 49749872 49750585 49749872 ID=MS.gene027021.t1.exon1;Parent=MS.gene027021.t1
chr3.4 CDS 49749872 49750585 49749872 ID=cds.MS.gene027021.t1;Parent=MS.gene027021.t1
Gene Sequence

>MS.gene027021

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCTCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGTGCAAGACGGCCGGGACTCAATTTTGGTGGGCAGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTTTAATCCATGGTGCTCCTACTCAAACCTTTCCATTTTTTCTTGGAAACAATTCATCCTCAAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCACCAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene027021.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLCKTAGTQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLLIHGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFTNMGGGGGYGPSGFF