AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027023

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027023.t1 MTR_8g043650 86.498 237 32 0 1 237 1 237 2.74e-154 428
MS.gene027023.t1 MTR_3g052920 91.743 218 18 0 1 218 1 218 3.65e-150 417
MS.gene027023.t1 MTR_2g030740 89.030 237 26 0 1 237 1 237 6.38e-147 409
MS.gene027023.t1 MTR_1g105920 88.991 218 24 0 1 218 1 218 2.06e-146 408
MS.gene027023.t1 MTR_1g105910 86.076 237 33 0 1 237 1 237 2.33e-145 405
MS.gene027023.t1 MTR_1g012570 85.232 237 35 0 1 237 1 237 5.23e-139 389
MS.gene027023.t1 MTR_3g052870 83.105 219 18 1 1 219 1 200 4.83e-130 366
MS.gene027023.t1 MTR_1g105905 78.636 220 47 0 18 237 1 220 2.38e-129 364
MS.gene027023.t1 MTR_0121s0080 71.308 237 67 1 1 237 1 236 1.29e-120 343
MS.gene027023.t1 MTR_1g106070 87.363 182 23 0 1 182 1 182 2.81e-119 337
MS.gene027023.t1 MTR_1g108510 72.766 235 46 3 1 225 1 227 5.98e-119 338
MS.gene027023.t1 MTR_3g030770 71.489 235 49 3 1 225 1 227 6.30e-118 336
MS.gene027023.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 2.38e-116 332
MS.gene027023.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 1.53e-115 330
MS.gene027023.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 4.06e-115 329
MS.gene027023.t1 MTR_5g055100 65.401 237 82 0 1 237 1 237 1.97e-114 327
MS.gene027023.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 7.76e-114 325
MS.gene027023.t1 MTR_1g077360 69.333 225 69 0 1 225 1 225 1.21e-113 325
MS.gene027023.t1 MTR_1g108580 69.787 235 53 3 1 225 1 227 1.77e-111 319
MS.gene027023.t1 MTR_5g045560 67.511 237 77 0 1 237 1 237 2.76e-108 311
MS.gene027023.t1 MTR_5g053390 67.111 225 74 0 1 225 1 225 1.16e-106 307
MS.gene027023.t1 MTR_7g062350 66.816 223 72 2 16 237 27 248 1.10e-103 300
MS.gene027023.t1 MTR_0121s0100 76.515 132 31 0 1 132 1 132 5.71e-68 206
MS.gene027023.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 3.54e-66 201
MS.gene027023.t1 MTR_1g075570 63.483 178 51 1 18 195 1 164 4.74e-66 202
MS.gene027023.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 5.89e-63 196
MS.gene027023.t1 MTR_3g067910 70.588 102 30 0 21 122 2 103 4.99e-47 151
MS.gene027023.t1 MTR_8g086290 39.779 181 95 3 5 182 8 177 7.89e-40 135
MS.gene027023.t1 MTR_2g105290 38.728 173 96 2 5 174 8 173 4.36e-39 134
MS.gene027023.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 4.68e-34 120
MS.gene027023.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 4.68e-34 120
MS.gene027023.t1 MTR_1g108500 43.931 173 53 4 8 158 94 244 9.50e-32 119
MS.gene027023.t1 MTR_4g127140 37.500 184 95 4 5 175 8 184 2.89e-30 111
MS.gene027023.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 2.10e-27 100
MS.gene027023.t1 MTR_3g067915 53.191 94 44 0 33 126 3 96 1.20e-25 96.7
MS.gene027023.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.44e-24 96.3
MS.gene027023.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 2.89e-24 95.5
MS.gene027023.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.56e-23 94.7
MS.gene027023.t1 MTR_8g046350 40.909 132 66 3 9 135 2 126 1.58e-23 93.2
MS.gene027023.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.66e-23 92.8
MS.gene027023.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.96e-23 93.2
MS.gene027023.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 2.19e-23 93.2
MS.gene027023.t1 MTR_8g051580 46.535 101 52 1 9 109 2 100 2.55e-23 93.2
MS.gene027023.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.27e-20 85.5
MS.gene027023.t1 MTR_4g093970 34.545 165 85 3 10 153 29 191 8.12e-20 85.1
MS.gene027023.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 3.77e-19 83.2
MS.gene027023.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 6.86e-19 82.8
MS.gene027023.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.64e-18 80.5
MS.gene027023.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 3.33e-18 80.1
MS.gene027023.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 3.39e-18 81.3
MS.gene027023.t1 MTR_3g102570 37.795 127 71 4 9 129 2 126 4.83e-18 81.6
MS.gene027023.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.32e-17 79.0
MS.gene027023.t1 MTR_8g022970 33.951 162 94 3 8 163 17 171 1.33e-17 78.2
MS.gene027023.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.15e-17 79.0
MS.gene027023.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.08e-17 78.6
MS.gene027023.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 3.87e-17 78.6
MS.gene027023.t1 MTR_8g033220 31.395 172 89 5 10 179 3 147 4.54e-17 77.4
MS.gene027023.t1 MTR_8g033220 31.395 172 89 5 10 179 3 147 4.82e-17 77.8
MS.gene027023.t1 MTR_5g032520 27.230 213 131 6 9 201 2 210 9.57e-17 76.6
MS.gene027023.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 9.90e-17 75.9
MS.gene027023.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.11e-16 76.6
MS.gene027023.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.24e-16 76.6
MS.gene027023.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.33e-16 76.6
MS.gene027023.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.64e-16 75.9
MS.gene027023.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.34e-16 76.3
MS.gene027023.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.53e-16 75.5
MS.gene027023.t1 MTR_3g437790 33.813 139 83 4 26 159 30 164 7.33e-16 73.6
MS.gene027023.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 7.46e-16 75.9
MS.gene027023.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 8.57e-16 69.7
MS.gene027023.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.07e-15 74.3
MS.gene027023.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.22e-15 73.9
MS.gene027023.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.29e-15 73.9
MS.gene027023.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.40e-15 73.6
MS.gene027023.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.51e-15 73.6
MS.gene027023.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 2.91e-15 72.4
MS.gene027023.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.96e-15 72.4
MS.gene027023.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.62e-15 69.3
MS.gene027023.t1 MTR_5g021270 35.714 126 71 2 9 134 2 117 5.75e-15 72.0
MS.gene027023.t1 MTR_5g021270 35.714 126 71 2 9 134 2 117 6.14e-15 72.0
MS.gene027023.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.84e-14 70.9
MS.gene027023.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene027023.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.90e-14 70.1
MS.gene027023.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.38e-14 68.9
MS.gene027023.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 4.23e-14 69.7
MS.gene027023.t1 MTR_3g109930 32.609 138 89 2 27 163 20 154 4.40e-14 68.6
MS.gene027023.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 5.51e-14 69.3
MS.gene027023.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 5.70e-14 69.3
MS.gene027023.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 6.24e-14 68.2
MS.gene027023.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.02e-13 68.6
MS.gene027023.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.98e-13 67.8
MS.gene027023.t1 MTR_4g108720 28.144 167 102 8 9 163 2 162 1.95e-12 66.2
MS.gene027023.t1 MTR_4g093030 47.541 61 32 0 9 69 2 62 2.46e-12 63.2
MS.gene027023.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.83e-11 61.2
MS.gene027023.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.94e-11 61.6
MS.gene027023.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.94e-11 61.6
MS.gene027023.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.26e-11 61.6
MS.gene027023.t1 MTR_4g051538 32.867 143 85 2 5 147 5 136 3.74e-11 61.2
MS.gene027023.t1 MTR_1g041615 36.449 107 59 2 20 125 17 115 4.38e-11 59.3
MS.gene027023.t1 MTR_2g045020 29.630 162 88 7 7 159 21 165 8.31e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027023.t1 AT5G60440 53.723 188 80 3 5 189 3 186 4.02e-61 194
MS.gene027023.t1 AT2G24840 49.080 163 72 4 6 162 60 217 1.11e-43 148
MS.gene027023.t1 AT1G65360 39.153 189 108 3 5 192 3 185 9.61e-41 139
MS.gene027023.t1 AT1G01530 41.667 192 100 4 4 192 2 184 2.40e-40 139
MS.gene027023.t1 AT4G36590 46.341 164 78 4 5 160 3 164 4.05e-39 136
MS.gene027023.t1 AT2G34440 39.073 151 82 3 9 155 2 146 2.52e-28 105
MS.gene027023.t1 AT3G66656 43.697 119 63 1 9 123 2 120 1.18e-25 99.4
MS.gene027023.t1 AT3G04100 34.356 163 101 4 2 159 7 168 3.07e-25 99.0
MS.gene027023.t1 AT1G72350 56.164 73 30 1 9 81 43 113 9.47e-22 90.1
MS.gene027023.t1 AT4G18960 30.864 243 132 9 5 226 15 242 3.40e-20 86.7
MS.gene027023.t1 AT1G28460 28.571 161 111 2 5 163 4 162 4.34e-20 84.7
MS.gene027023.t1 AT4G22950 51.316 76 37 0 10 85 3 78 1.03e-19 83.6
MS.gene027023.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.42e-19 83.6
MS.gene027023.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.42e-19 83.6
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.05e-19 83.2
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.54e-19 83.6
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.61e-19 83.6
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 12 97 4.99e-19 83.2
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.73e-19 83.2
MS.gene027023.t1 AT2G45660 52.941 68 32 0 10 77 3 70 8.33e-19 80.9
MS.gene027023.t1 AT2G45650 52.941 68 32 0 9 76 2 69 9.46e-19 82.8
MS.gene027023.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.30e-18 82.8
MS.gene027023.t1 AT2G45660 52.941 68 32 0 10 77 3 70 2.77e-18 80.5
MS.gene027023.t1 AT1G29962 28.743 167 103 4 5 165 4 160 1.41e-17 78.2
MS.gene027023.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.64e-17 79.0
MS.gene027023.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.64e-17 79.0
MS.gene027023.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.70e-17 77.0
MS.gene027023.t1 AT2G42830 47.368 76 40 0 1 76 9 84 2.71e-17 78.6
MS.gene027023.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.04e-17 78.6
MS.gene027023.t1 AT3G58780 50.704 71 35 0 6 76 14 84 3.43e-17 78.6
MS.gene027023.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.51e-17 77.4
MS.gene027023.t1 AT3G61120 51.471 68 33 0 9 76 2 69 3.54e-17 78.2
MS.gene027023.t1 AT3G58780 50.704 71 35 0 6 76 20 90 3.64e-17 78.6
MS.gene027023.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.65e-17 75.9
MS.gene027023.t1 AT4G24540 51.471 68 33 0 9 76 2 69 4.72e-17 77.4
MS.gene027023.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.12e-17 77.0
MS.gene027023.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.84e-17 77.0
MS.gene027023.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.94e-17 78.2
MS.gene027023.t1 AT5G51870 53.731 67 31 0 10 76 13 79 7.71e-17 77.0
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.73e-17 73.9
MS.gene027023.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.01e-16 75.5
MS.gene027023.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.20e-16 76.6
MS.gene027023.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.26e-16 76.3
MS.gene027023.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.29e-16 75.5
MS.gene027023.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.36e-16 76.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.41e-16 74.7
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.41e-16 74.7
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.41e-16 74.7
MS.gene027023.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.41e-16 77.8
MS.gene027023.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.51e-16 77.0
MS.gene027023.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.54e-16 75.1
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.60e-16 74.3
MS.gene027023.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.60e-16 75.5
MS.gene027023.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.80e-16 75.1
MS.gene027023.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.83e-16 77.4
MS.gene027023.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.87e-16 76.3
MS.gene027023.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.87e-16 76.3
MS.gene027023.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.87e-16 76.6
MS.gene027023.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.04e-16 74.7
MS.gene027023.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.04e-16 74.7
MS.gene027023.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.49e-16 76.3
MS.gene027023.t1 AT1G17310 53.165 79 35 1 8 86 47 123 3.84e-16 75.1
MS.gene027023.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.92e-16 74.7
MS.gene027023.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.19e-16 75.1
MS.gene027023.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.19e-16 75.1
MS.gene027023.t1 AT1G69120 43.373 83 44 1 9 91 2 81 4.30e-16 75.1
MS.gene027023.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.97e-16 75.5
MS.gene027023.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.97e-16 75.5
MS.gene027023.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.97e-16 75.5
MS.gene027023.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.97e-16 75.5
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.02e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.02e-16 74.3
MS.gene027023.t1 AT1G17310 53.165 79 35 1 8 86 58 134 5.59e-16 74.7
MS.gene027023.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.59e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.61e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.61e-16 74.3
MS.gene027023.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.61e-16 74.3
MS.gene027023.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.09e-16 74.7
MS.gene027023.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.09e-16 74.7
MS.gene027023.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.06e-16 74.7
MS.gene027023.t1 AT5G15800 29.167 240 129 9 9 224 2 224 8.11e-16 74.7
MS.gene027023.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.41e-16 74.7
MS.gene027023.t1 AT1G26310 47.826 69 35 1 9 76 2 70 9.57e-16 74.7
MS.gene027023.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.09e-15 74.3
MS.gene027023.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.51e-15 73.6
MS.gene027023.t1 AT1G28450 26.286 175 123 4 5 173 4 178 1.79e-15 72.4
MS.gene027023.t1 AT5G15800 29.310 232 126 8 9 216 2 219 3.32e-15 73.2
MS.gene027023.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.77e-15 70.5
MS.gene027023.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.79e-15 72.4
MS.gene027023.t1 AT2G22540 50.000 68 29 1 9 76 2 64 4.96e-15 72.4
MS.gene027023.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.89e-15 72.0
MS.gene027023.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.16e-15 71.2
MS.gene027023.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.02e-14 72.0
MS.gene027023.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.10e-14 71.6
MS.gene027023.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.41e-14 70.5
MS.gene027023.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.47e-14 69.7
MS.gene027023.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.81e-14 70.9
MS.gene027023.t1 AT5G23260 44.318 88 43 2 9 90 2 89 1.94e-14 70.9
MS.gene027023.t1 AT5G23260 44.318 88 43 2 9 90 2 89 1.98e-14 70.9
MS.gene027023.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.38e-14 70.9
MS.gene027023.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.61e-14 69.3
MS.gene027023.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.96e-14 69.3
MS.gene027023.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.03e-14 68.9
MS.gene027023.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.63e-14 70.1
MS.gene027023.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.72e-14 68.9
MS.gene027023.t1 AT1G24260 41.237 97 54 1 9 105 2 95 4.48e-14 69.7
MS.gene027023.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.85e-14 68.6
MS.gene027023.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.07e-14 68.6
MS.gene027023.t1 AT1G24260 41.237 97 54 1 9 105 2 95 5.47e-14 69.7
MS.gene027023.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.04e-14 68.6
MS.gene027023.t1 AT1G24260 46.377 69 36 1 9 76 2 70 6.34e-14 69.3
MS.gene027023.t1 AT1G47760 34.483 116 61 3 9 123 2 103 6.90e-14 68.2
MS.gene027023.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.01e-14 68.9
MS.gene027023.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.21e-14 68.9
MS.gene027023.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.77e-13 67.4
MS.gene027023.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.36e-13 65.9
MS.gene027023.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.79e-13 66.2
MS.gene027023.t1 AT5G65070 42.029 69 39 1 9 76 2 70 8.81e-13 65.9
MS.gene027023.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.24e-13 65.5
MS.gene027023.t1 AT2G03060 29.379 177 96 9 9 164 2 170 2.83e-12 65.9
MS.gene027023.t1 AT2G03060 29.379 177 96 9 9 164 2 170 2.83e-12 65.9
MS.gene027023.t1 AT2G03060 29.379 177 96 9 9 164 2 170 2.83e-12 65.9
MS.gene027023.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.09e-12 65.9
MS.gene027023.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.41e-12 63.9
MS.gene027023.t1 AT1G18750 38.961 77 44 2 9 83 2 77 4.45e-12 65.1
MS.gene027023.t1 AT1G18750 38.961 77 44 2 9 83 2 77 4.60e-12 65.5
MS.gene027023.t1 AT1G18750 38.961 77 44 2 9 83 2 77 5.09e-12 65.1
MS.gene027023.t1 AT1G69540 33.636 110 65 3 9 117 2 104 8.88e-12 64.3
MS.gene027023.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.01e-11 64.3
MS.gene027023.t1 AT1G46408 33.613 119 70 4 10 119 5 123 1.84e-11 62.8
MS.gene027023.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.50e-11 61.2
MS.gene027023.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.58e-11 61.2
MS.gene027023.t1 AT2G26320 40.000 70 40 1 9 76 18 87 2.69e-11 59.3
MS.gene027023.t1 AT5G65080 48.148 54 28 0 9 62 9 62 6.98e-11 60.1
MS.gene027023.t1 AT5G27130 40.000 85 47 2 2 82 6 90 7.03e-11 61.2

Find 67 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.224208 3.4:+49726494 MS.gene027023:CDS
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3.4:+49726765 MS.gene027023:CDS
GTAGGAGCACCCTGGATTAC+AGG 0.314845 3.4:-49726616 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.4:-49726700 None:intergenic
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.4:-49726357 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.372232 3.4:+49726593 MS.gene027023:CDS
TGGTGGGCAGGTCCCATTGA+TGG 0.375461 3.4:+49726514 MS.gene027023:CDS
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.4:+49726751 MS.gene027023:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3.4:+49726746 MS.gene027023:CDS
TGTTGATAGGCCTGTAATCC+AGG 0.412820 3.4:+49726606 MS.gene027023:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3.4:+49726766 MS.gene027023:CDS
GTCCCATTGATGGGATGAAT+CGG 0.423242 3.4:+49726524 MS.gene027023:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3.4:-49726441 None:intergenic
GGTGGGCAGGTCCCATTGAT+GGG 0.441555 3.4:+49726515 MS.gene027023:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 3.4:-49726310 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.4:-49726548 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.4:+49726555 MS.gene027023:CDS
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.4:-49726527 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.4:-49726690 None:intergenic
AGCCACTTGTGCAAGACGGC+CGG 0.462215 3.4:+49726481 MS.gene027023:CDS
GCCACTTGTGCAAGACGGCC+GGG 0.485933 3.4:+49726482 MS.gene027023:CDS
TCCCGGCCGTCTTGCACAAG+TGG 0.492110 3.4:-49726483 None:intergenic
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3.4:-49726727 None:intergenic
ATGATGGAGAGGCATGTTAG+AGG 0.501643 3.4:-49726674 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3.4:-49726311 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.4:-49726526 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3.4:-49726747 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.4:+49726429 MS.gene027023:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.4:-49726549 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.517878 3.4:+49726525 MS.gene027023:CDS
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.4:-49726227 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.4:-49726748 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 3.4:-49726401 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.4:-49726709 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.4:-49726393 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.4:+49726549 MS.gene027023:CDS
TGCCCACCAAAATTGAGTCC+CGG 0.536645 3.4:-49726500 None:intergenic
GGGCACGGATCAAAAGAATC+CGG 0.540660 3.4:-49726812 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 3.4:+49726303 MS.gene027023:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.4:-49726280 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.4:+49726191 MS.gene027023:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 3.4:+49726793 MS.gene027023:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3.4:+49726326 MS.gene027023:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.4:+49726190 MS.gene027023:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3.4:+49726767 MS.gene027023:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.4:+49726229 MS.gene027023:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.4:-49726242 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.4:+49726104 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.4:+49726100 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 3.4:-49726624 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.4:-49726204 None:intergenic
GTTGATAGGCCTGTAATCCA+GGG 0.614929 3.4:+49726607 MS.gene027023:CDS
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.4:-49726706 None:intergenic
GCTGAGCCACTTGTGCAAGA+CGG 0.626924 3.4:+49726477 MS.gene027023:CDS
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.4:+49726346 MS.gene027023:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.4:+49726366 MS.gene027023:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.4:-49726371 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3.4:+49726768 MS.gene027023:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.4:-49726685 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3.4:-49726760 None:intergenic
CACGGATCAAAAGAATCCGG+AGG 0.655674 3.4:-49726809 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3.4:+49726769 MS.gene027023:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 3.4:-49726306 None:intergenic
ACGGATCAAAAGAATCCGGA+GGG 0.678771 3.4:-49726808 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.4:+49726115 MS.gene027023:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3.4:-49726309 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3.4:-49726243 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.4:49726144-49726163 None:intergenic 20.0%
! GAATTGTTTCCAAGAAAAAA+TGG - chr3.4:49726652-49726671 None:intergenic 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.4:49726551-49726570 None:intergenic 25.0%
AAAAATGGAAAGGTTTGAGT+AGG - chr3.4:49726637-49726656 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.4:49726549-49726568 MS.gene027023:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.4:49726552-49726571 None:intergenic 30.0%
GTTTCCAAGAAAAAATGGAA+AGG - chr3.4:49726647-49726666 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.4:49726326-49726345 MS.gene027023:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.4:49726593-49726612 MS.gene027023:CDS 30.0%
!!! CAAACCTTTCCATTTTTTCT+TGG + chr3.4:49726640-49726659 MS.gene027023:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG - chr3.4:49726314-49726333 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr3.4:49726313-49726332 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.4:49726555-49726574 MS.gene027023:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.4:49726360-49726379 None:intergenic 35.0%
! TGGTTTGGCTTCAACAATAT+GGG + chr3.4:49726766-49726785 MS.gene027023:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.4:49726359-49726378 None:intergenic 35.0%
!! TTGGTTTGGCTTCAACAATA+TGG + chr3.4:49726765-49726784 MS.gene027023:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.4:49726751-49726770 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.4:49726283-49726302 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.4:49726750-49726769 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG - chr3.4:49726312-49726331 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.4:49726366-49726385 MS.gene027023:CDS 40.0%
TTGTTGAAGCCAAACCAATG+AGG - chr3.4:49726763-49726782 None:intergenic 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.4:49726751-49726770 MS.gene027023:CDS 40.0%
! GGTTTGGCTTCAACAATATG+GGG + chr3.4:49726767-49726786 MS.gene027023:CDS 40.0%
! GTTTGGCTTCAACAATATGG+GGG + chr3.4:49726768-49726787 MS.gene027023:CDS 40.0%
! TTTGGCTTCAACAATATGGG+GGG + chr3.4:49726769-49726788 MS.gene027023:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.4:49726358-49726377 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.4:49726283-49726302 MS.gene027023:CDS 40.0%
ACCCTATGTTGCAACCTCAT+TGG + chr3.4:49726746-49726765 MS.gene027023:CDS 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.4:49726703-49726722 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.4:49726207-49726226 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.4:49726524-49726543 MS.gene027023:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.4:49726374-49726393 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.4:49726525-49726544 MS.gene027023:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr3.4:49726677-49726696 None:intergenic 45.0%
! GGGTTCTGATAAAACTGTGC+TGG - chr3.4:49726730-49726749 None:intergenic 45.0%
! GTTGATAGGCCTGTAATCCA+GGG + chr3.4:49726607-49726626 MS.gene027023:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.4:49726135-49726154 None:intergenic 45.0%
! TGTTGATAGGCCTGTAATCC+AGG + chr3.4:49726606-49726625 MS.gene027023:CDS 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.4:49726270-49726289 MS.gene027023:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.4:49726688-49726707 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.4:49726693-49726712 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.4:49726355-49726374 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.4:49726354-49726373 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.4:49726245-49726264 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.4:49726429-49726448 MS.gene027023:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.4:49726529-49726548 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.4:49726115-49726134 MS.gene027023:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.4:49726444-49726463 None:intergenic 50.0%
TGACCGTATCAACATTGGGG+TGG - chr3.4:49726309-49726328 None:intergenic 50.0%
TGCCCACCAAAATTGAGTCC+CGG - chr3.4:49726503-49726522 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG + chr3.4:49726303-49726322 MS.gene027023:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr3.4:49726775-49726794 MS.gene027023:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.4:49726262-49726281 MS.gene027023:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr3.4:49726778-49726797 MS.gene027023:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.4:49726229-49726248 MS.gene027023:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.4:49726346-49726365 MS.gene027023:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.4:49726246-49726265 None:intergenic 55.0%
GCTGAGCCACTTGTGCAAGA+CGG + chr3.4:49726477-49726496 MS.gene027023:CDS 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.4:49726530-49726549 None:intergenic 55.0%
GGCTTCAACAATATGGGGGG+AGG + chr3.4:49726772-49726791 MS.gene027023:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.4:49726230-49726249 None:intergenic 55.0%
! AGACGGCCGGGACTCAATTT+TGG + chr3.4:49726494-49726513 MS.gene027023:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.4:49726404-49726423 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.4:49726190-49726209 MS.gene027023:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG - chr3.4:49726627-49726646 None:intergenic 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.4:49726191-49726210 MS.gene027023:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.4:49726712-49726731 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.4:49726709-49726728 None:intergenic 55.0%
!! GGCCGGGACTCAATTTTGGT+GGG + chr3.4:49726498-49726517 MS.gene027023:CDS 55.0%
!! GGGACTCAATTTTGGTGGGC+AGG + chr3.4:49726502-49726521 MS.gene027023:CDS 55.0%
!! GTAGGAGCACCCTGGATTAC+AGG - chr3.4:49726619-49726638 None:intergenic 55.0%
AGCCACTTGTGCAAGACGGC+CGG + chr3.4:49726481-49726500 MS.gene027023:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.4:49726784-49726803 MS.gene027023:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr3.4:49726793-49726812 MS.gene027023:CDS 60.0%
GGTGGGCAGGTCCCATTGAT+GGG + chr3.4:49726515-49726534 MS.gene027023:CDS 60.0%
! CGGCCGGGACTCAATTTTGG+TGG + chr3.4:49726497-49726516 MS.gene027023:CDS 60.0%
! TGGTGGGCAGGTCCCATTGA+TGG + chr3.4:49726514-49726533 MS.gene027023:CDS 60.0%
GCCACTTGTGCAAGACGGCC+GGG + chr3.4:49726482-49726501 MS.gene027023:CDS 65.0%
TCCCGGCCGTCTTGCACAAG+TGG - chr3.4:49726486-49726505 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.4:49726396-49726415 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 49726112 49726825 49726112 ID=MS.gene027023
chr3.4 mRNA 49726112 49726825 49726112 ID=MS.gene027023.t1;Parent=MS.gene027023
chr3.4 exon 49726112 49726825 49726112 ID=MS.gene027023.t1.exon1;Parent=MS.gene027023.t1
chr3.4 CDS 49726112 49726825 49726112 ID=cds.MS.gene027023.t1;Parent=MS.gene027023.t1
Gene Sequence

>MS.gene027023

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGTGCAAGACGGCCGGGACTCAATTTTGGTGGGCAGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCCTGTAATCCAGGGTGCTCCTACTCAAACCTTTCCATTTTTTCTTGGAAACAATTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene027023.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLCKTAGTQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRPVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSGFF