Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027393.t1 | XP_013455667.1 | 98.2 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 6.40E-237 | 829.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027393.t1 | O80885 | 69.9 | 452 | 127 | 4 | 1 | 448 | 1 | 447 | 1.6e-164 | 580.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027393.t1 | A0A072UKS9 | 98.2 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 4.6e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027393 | MS.gene95570 | PPI |
| MS.gene027393 | MS.gene61575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027393.t1 | MTR_4g048590 | 98.214 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 0.0 | 874 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027393.t1 | AT2G32480 | 69.912 | 452 | 127 | 4 | 1 | 448 | 1 | 447 | 0.0 | 609 |
| MS.gene027393.t1 | AT1G05140 | 68.750 | 448 | 133 | 4 | 1 | 448 | 1 | 441 | 0.0 | 580 |
| MS.gene027393.t1 | AT2G32480 | 64.823 | 452 | 113 | 6 | 1 | 448 | 1 | 410 | 0.0 | 538 |
Find 100 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCGACAACTTGATATT+TGG | 0.141432 | 4.2:-52314259 | None:intergenic |
| TTAAGCAAAACATATTTCTT+AGG | 0.150211 | 4.2:-52314148 | None:intergenic |
| TTTGATGGAACTGGTAAAAT+TGG | 0.151233 | 4.2:+52314223 | MS.gene027393:CDS |
| CATCCGGTGTTACCCTAATT+TGG | 0.172313 | 4.2:-52314195 | None:intergenic |
| GCATTAAACTTAGCTAAAAT+TGG | 0.183684 | 4.2:-52313740 | None:intergenic |
| TCGCGAGATGGATTGCTTTC+GGG | 0.208520 | 4.2:+52314037 | MS.gene027393:CDS |
| CAGACAGCTAGTAAGGTTTC+AGG | 0.219254 | 4.2:+52314388 | MS.gene027393:CDS |
| TTTCCTCTTGGTGGGTTTGT+AGG | 0.241165 | 4.2:+52313791 | MS.gene027393:CDS |
| GCAATTGGTGGATTTGATTA+TGG | 0.246708 | 4.2:+52313581 | MS.gene027393:CDS |
| CCTTCTACCTTTGCCGGCTT+TGG | 0.253627 | 4.2:+52314513 | MS.gene027393:CDS |
| GGGGACAAGACTTCCAAATT+AGG | 0.265672 | 4.2:+52314182 | MS.gene027393:CDS |
| CCTTTACTGCGAAAGAGTTT+TGG | 0.270072 | 4.2:+52314311 | MS.gene027393:CDS |
| TTCGCGAGATGGATTGCTTT+CGG | 0.282707 | 4.2:+52314036 | MS.gene027393:CDS |
| TTTCTTGCTGCTTCTCTTCA+AGG | 0.306687 | 4.2:+52313683 | MS.gene027393:CDS |
| TATAAACCTTCTACCTTTGC+CGG | 0.318608 | 4.2:+52314507 | MS.gene027393:CDS |
| TGAAATGGGTCTCTTTGAAT+TGG | 0.322596 | 4.2:-52313420 | None:intergenic |
| AGATAGGATTATTGTGGTTT+CGG | 0.324636 | 4.2:+52313886 | MS.gene027393:CDS |
| CCTGTTCAAGAAATATTTCC+TGG | 0.325847 | 4.2:+52313977 | MS.gene027393:CDS |
| TCACTATCTGGATCATTATC+AGG | 0.350050 | 4.2:-52313818 | None:intergenic |
| TAAGAGTATCGCGAATAATA+AGG | 0.350606 | 4.2:-52314657 | None:intergenic |
| AGTAAATTTGCTGTTGGGTT+TGG | 0.354648 | 4.2:+52313716 | MS.gene027393:CDS |
| ACTGATTTCCGTTAACTTCA+AGG | 0.355280 | 4.2:-52314069 | None:intergenic |
| CGGAAATCAGTTTCTTAAAC+CGG | 0.355433 | 4.2:+52314081 | MS.gene027393:CDS |
| TTTGCATAGTAAAAGAAATA+GGG | 0.356049 | 4.2:+52313538 | MS.gene027393:CDS |
| GGTGGTGAGTTTCACGTTAG+AGG | 0.363274 | 4.2:-52313504 | None:intergenic |
| CGCAAGGTTAATATTCAGTA+TGG | 0.371211 | 4.2:-52314482 | None:intergenic |
| AGCAAATTTACATCATCAAC+AGG | 0.372749 | 4.2:-52313845 | None:intergenic |
| TATTCAGTATGGCTGCAAAT+TGG | 0.383073 | 4.2:-52314471 | None:intergenic |
| ACAATAATCCTATCTAATAT+TGG | 0.383132 | 4.2:-52313878 | None:intergenic |
| AGAATAGACCAATATTAGAT+AGG | 0.384604 | 4.2:+52313870 | MS.gene027393:CDS |
| CCAGGAAATATTTCTTGAAC+AGG | 0.391939 | 4.2:-52313977 | None:intergenic |
| TTCCTCTTGGTGGGTTTGTA+GGG | 0.392433 | 4.2:+52313792 | MS.gene027393:CDS |
| TCAACAGGAATATCACTATC+TGG | 0.396061 | 4.2:-52313830 | None:intergenic |
| TCTCGCGAAGCAGCCGAAAA+AGG | 0.396574 | 4.2:-52314022 | None:intergenic |
| TTTGATTATGGAAGCTTTGA+AGG | 0.401275 | 4.2:+52313593 | MS.gene027393:CDS |
| CTACCTTTGCCGGCTTTGGA+TGG | 0.409600 | 4.2:+52314517 | MS.gene027393:CDS |
| TGATTCTCGTTGAGGCTGCT+AGG | 0.412953 | 4.2:+52314554 | MS.gene027393:CDS |
| GTGGAGTGTGAGGGTGGAGA+AGG | 0.413285 | 4.2:-52313380 | None:intergenic |
| CCAAAGCCGGCAAAGGTAGA+AGG | 0.413746 | 4.2:-52314513 | None:intergenic |
| ATCATTGTTGTTCATGAAAG+TGG | 0.414510 | 4.2:+52313656 | MS.gene027393:CDS |
| TAAGCAAAACATATTTCTTA+GGG | 0.418908 | 4.2:-52314147 | None:intergenic |
| GCTTAAGGAAGAATCTGAAA+TGG | 0.426413 | 4.2:-52313435 | None:intergenic |
| TTTAGGACATGTAGAGCAAT+TGG | 0.435369 | 4.2:+52313566 | MS.gene027393:CDS |
| TTCTTGCTGCTTCTCTTCAA+GGG | 0.444308 | 4.2:+52313684 | MS.gene027393:CDS |
| GATTCTCGTTGAGGCTGCTA+GGG | 0.458753 | 4.2:+52314555 | MS.gene027393:CDS |
| CTTAAGGAAGAATCTGAAAT+GGG | 0.469198 | 4.2:-52313434 | None:intergenic |
| ATATCAAGTTGTCGAAGGTT+AGG | 0.469241 | 4.2:+52314263 | MS.gene027393:CDS |
| CGCGAGATGGATTGCTTTCG+GGG | 0.481162 | 4.2:+52314038 | MS.gene027393:CDS |
| CCAAAACTCTTTCGCAGTAA+AGG | 0.485882 | 4.2:-52314311 | None:intergenic |
| TTTGTTCAAATCCTTGCTGT+TGG | 0.489719 | 4.2:+52313950 | MS.gene027393:CDS |
| CTCGTTGAGGCTGCTAGGGG+CGG | 0.494547 | 4.2:+52314559 | MS.gene027393:CDS |
| GAGCAACGGATCATGTCATC+AGG | 0.499554 | 4.2:+52314604 | MS.gene027393:CDS |
| ATGTGAGTAAATTTGCTGTT+GGG | 0.501004 | 4.2:+52313711 | MS.gene027393:CDS |
| CATGTGAGTAAATTTGCTGT+TGG | 0.509127 | 4.2:+52313710 | MS.gene027393:CDS |
| GTGAGGGTGGAGAAGGAGAG+AGG | 0.509612 | 4.2:-52313373 | None:intergenic |
| GGGACAAGACTTCCAAATTA+GGG | 0.517695 | 4.2:+52314183 | MS.gene027393:CDS |
| CCTTTGCCGGCTTTGGATGG+AGG | 0.518561 | 4.2:+52314520 | MS.gene027393:CDS |
| CATAGTAAAAGAAATAGGGT+TGG | 0.527269 | 4.2:+52313542 | MS.gene027393:CDS |
| GGCTTTGGATGGAGGAACAT+TGG | 0.527349 | 4.2:+52314528 | MS.gene027393:CDS |
| TGAATTGGATAATCTGATGA+TGG | 0.528552 | 4.2:-52313405 | None:intergenic |
| AGGATTATTGTGGTTTCGGC+CGG | 0.533130 | 4.2:+52313890 | MS.gene027393:CDS |
| GTTCCATCAAAATTCTCATC+CGG | 0.534764 | 4.2:-52314211 | None:intergenic |
| TCGTTGAGGCTGCTAGGGGC+GGG | 0.534787 | 4.2:+52314560 | MS.gene027393:CDS |
| GGAAATCAGTTTCTTAAACC+GGG | 0.540864 | 4.2:+52314082 | MS.gene027393:CDS |
| AATATTAGATAGGATTATTG+TGG | 0.545638 | 4.2:+52313880 | MS.gene027393:CDS |
| AGGACATGTAGAGCAATTGG+TGG | 0.546380 | 4.2:+52313569 | MS.gene027393:CDS |
| CCTGTAGCGATTATTGCTGT+TGG | 0.546565 | 4.2:+52314412 | MS.gene027393:CDS |
| GAGAAAGCTACCTATGGAGG+TGG | 0.552065 | 4.2:+52314582 | MS.gene027393:CDS |
| GTAGAAGGTTTATAATCGCA+AGG | 0.560958 | 4.2:-52314498 | None:intergenic |
| CCTCCATCCAAAGCCGGCAA+AGG | 0.567047 | 4.2:-52314520 | None:intergenic |
| ATGGAAGTGGAGTGTGAGGG+TGG | 0.567328 | 4.2:-52313386 | None:intergenic |
| CCAACAGCAATAATCGCTAC+AGG | 0.569279 | 4.2:-52314412 | None:intergenic |
| CGGGAGAAAGCTACCTATGG+AGG | 0.569640 | 4.2:+52314579 | MS.gene027393:CDS |
| GGATAATCTGATGATGGAAG+TGG | 0.572528 | 4.2:-52313399 | None:intergenic |
| ATCCGTTGCTCCACCTCCAT+AGG | 0.578020 | 4.2:-52314592 | None:intergenic |
| GGGCGGGAGAAAGCTACCTA+TGG | 0.580226 | 4.2:+52314576 | MS.gene027393:CDS |
| AATGTTCCTCCATCCAAAGC+CGG | 0.580400 | 4.2:-52314526 | None:intergenic |
| TCCAAATATCAAGTTGTCGA+AGG | 0.583521 | 4.2:+52314258 | MS.gene027393:CDS |
| ATTGGCGTTGATTCTCGTTG+AGG | 0.585481 | 4.2:+52314546 | MS.gene027393:CDS |
| TCAGAAACAGAATTAGACCC+CGG | 0.597170 | 4.2:-52314100 | None:intergenic |
| GATGTGATCCTTGAAGTTAA+CGG | 0.598710 | 4.2:+52314061 | MS.gene027393:CDS |
| TACCTATGGAGGTGGAGCAA+CGG | 0.602168 | 4.2:+52314590 | MS.gene027393:CDS |
| GAAATCAGTTTCTTAAACCG+GGG | 0.602739 | 4.2:+52314083 | MS.gene027393:CDS |
| GTTGCGCGGTCGAACATCGA+TGG | 0.614112 | 4.2:+52314442 | MS.gene027393:CDS |
| AATAACATTTGCAATAACAC+CGG | 0.631202 | 4.2:-52313909 | None:intergenic |
| ATTTCCTGGTGTGAATGTGC+CGG | 0.634222 | 4.2:+52313991 | MS.gene027393:CDS |
| ACCTCCGGCACATTCACACC+AGG | 0.635363 | 4.2:-52313995 | None:intergenic |
| GATGATGGAAGTGGAGTGTG+AGG | 0.635866 | 4.2:-52313390 | None:intergenic |
| ATTCTCGTTGAGGCTGCTAG+GGG | 0.640021 | 4.2:+52314556 | MS.gene027393:CDS |
| TTGCTTAAGGTTAAGAGGGG+GGG | 0.641883 | 4.2:+52314163 | MS.gene027393:CDS |
| CTTCCAAATTAGGGTAACAC+CGG | 0.651525 | 4.2:+52314192 | MS.gene027393:CDS |
| AACCCTACAAACCCACCAAG+AGG | 0.655878 | 4.2:-52313794 | None:intergenic |
| AGGAGAGAGGTATATGACCA+TGG | 0.656468 | 4.2:-52313360 | None:intergenic |
| TCCTGGTGTGAATGTGCCGG+AGG | 0.657210 | 4.2:+52313994 | MS.gene027393:CDS |
| TTTGCTTAAGGTTAAGAGGG+GGG | 0.665357 | 4.2:+52314162 | MS.gene027393:CDS |
| ATGATGGAAGTGGAGTGTGA+GGG | 0.671107 | 4.2:-52313389 | None:intergenic |
| GCGAGATGGATTGCTTTCGG+GGG | 0.672901 | 4.2:+52314039 | MS.gene027393:CDS |
| GAACAGGCAAACCAACAGCA+AGG | 0.679335 | 4.2:-52313961 | None:intergenic |
| GCAGCTTCAAGCACAGACTG+AGG | 0.679498 | 4.2:-52313617 | None:intergenic |
| CTGTTGGTGCAGAAGTTGCG+CGG | 0.693355 | 4.2:+52314428 | MS.gene027393:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGATAGGATTATTG+TGG | + | chr4.2:52313880-52313899 | MS.gene027393:CDS | 20.0% |
| !! | ACAATAATCCTATCTAATAT+TGG | - | chr4.2:52313881-52313900 | None:intergenic | 20.0% |
| !! | TAAGCAAAACATATTTCTTA+GGG | - | chr4.2:52314150-52314169 | None:intergenic | 20.0% |
| !! | TTAAGCAAAACATATTTCTT+AGG | - | chr4.2:52314151-52314170 | None:intergenic | 20.0% |
| !! | TTTGCATAGTAAAAGAAATA+GGG | + | chr4.2:52313538-52313557 | MS.gene027393:CDS | 20.0% |
| !!! | TAAGAAATATGTTTTGCTTA+AGG | + | chr4.2:52314150-52314169 | MS.gene027393:CDS | 20.0% |
| !!! | TTTTGCATAGTAAAAGAAAT+AGG | + | chr4.2:52313537-52313556 | MS.gene027393:CDS | 20.0% |
| ! | AATAACATTTGCAATAACAC+CGG | - | chr4.2:52313912-52313931 | None:intergenic | 25.0% |
| ! | AGAATAGACCAATATTAGAT+AGG | + | chr4.2:52313870-52313889 | MS.gene027393:CDS | 25.0% |
| ! | AGATTTCCTTGAAAAAATCA+AGG | - | chr4.2:52314684-52314703 | None:intergenic | 25.0% |
| ! | GCATTAAACTTAGCTAAAAT+TGG | - | chr4.2:52313743-52313762 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGATTTTGAGAAG+TGG | - | chr4.2:52313469-52313488 | None:intergenic | 25.0% |
| !!! | AAAAAGTGATTTTGAGAAGT+GGG | - | chr4.2:52313468-52313487 | None:intergenic | 25.0% |
| !!! | TCTTAACCTTGATTTTTTCA+AGG | + | chr4.2:52314675-52314694 | MS.gene027393:CDS | 25.0% |
| AGATAGGATTATTGTGGTTT+CGG | + | chr4.2:52313886-52313905 | MS.gene027393:CDS | 30.0% | |
| AGCAAATTTACATCATCAAC+AGG | - | chr4.2:52313848-52313867 | None:intergenic | 30.0% | |
| CATAGTAAAAGAAATAGGGT+TGG | + | chr4.2:52313542-52313561 | MS.gene027393:CDS | 30.0% | |
| TGAATTGGATAATCTGATGA+TGG | - | chr4.2:52313408-52313427 | None:intergenic | 30.0% | |
| TTTGATGGAACTGGTAAAAT+TGG | + | chr4.2:52314223-52314242 | MS.gene027393:CDS | 30.0% | |
| ! | ATCATTGTTGTTCATGAAAG+TGG | + | chr4.2:52313656-52313675 | MS.gene027393:CDS | 30.0% |
| ! | ATGTTTTGCTTAAGGTTAAG+AGG | + | chr4.2:52314158-52314177 | MS.gene027393:CDS | 30.0% |
| ! | CTTAAGGAAGAATCTGAAAT+GGG | - | chr4.2:52313437-52313456 | None:intergenic | 30.0% |
| ! | TGTTTTGCTTAAGGTTAAGA+GGG | + | chr4.2:52314159-52314178 | MS.gene027393:CDS | 30.0% |
| ! | TTTGATTATGGAAGCTTTGA+AGG | + | chr4.2:52313593-52313612 | MS.gene027393:CDS | 30.0% |
| !! | ATGTGAGTAAATTTGCTGTT+GGG | + | chr4.2:52313711-52313730 | MS.gene027393:CDS | 30.0% |
| !! | TAAGAGTATCGCGAATAATA+AGG | - | chr4.2:52314660-52314679 | None:intergenic | 30.0% |
| !! | TATCGTCGAATGTTTTTGAT+GGG | + | chr4.2:52314338-52314357 | MS.gene027393:CDS | 30.0% |
| !! | TTATCGTCGAATGTTTTTGA+TGG | + | chr4.2:52314337-52314356 | MS.gene027393:CDS | 30.0% |
| !!! | AAAGAAATAGGGTTGGTTTT+AGG | + | chr4.2:52313549-52313568 | MS.gene027393:CDS | 30.0% |
| !!! | ATTATGCTTGTTTTGCTTCT+TGG | + | chr4.2:52314628-52314647 | MS.gene027393:CDS | 30.0% |
| !!! | TTATGCTTGTTTTGCTTCTT+GGG | + | chr4.2:52314629-52314648 | MS.gene027393:CDS | 30.0% |
| ACCTTCGACAACTTGATATT+TGG | - | chr4.2:52314262-52314281 | None:intergenic | 35.0% | |
| ACTATGCAAAAACTGCTTCT+TGG | - | chr4.2:52313528-52313547 | None:intergenic | 35.0% | |
| CCAGGAAATATTTCTTGAAC+AGG | - | chr4.2:52313980-52313999 | None:intergenic | 35.0% | |
| CCTGTTCAAGAAATATTTCC+TGG | + | chr4.2:52313977-52313996 | MS.gene027393:CDS | 35.0% | |
| CGCAAGGTTAATATTCAGTA+TGG | - | chr4.2:52314485-52314504 | None:intergenic | 35.0% | |
| CGGAAATCAGTTTCTTAAAC+CGG | + | chr4.2:52314081-52314100 | MS.gene027393:CDS | 35.0% | |
| GAAATCAGTTTCTTAAACCG+GGG | + | chr4.2:52314083-52314102 | MS.gene027393:CDS | 35.0% | |
| GATGTGATCCTTGAAGTTAA+CGG | + | chr4.2:52314061-52314080 | MS.gene027393:CDS | 35.0% | |
| GCTTAAGGAAGAATCTGAAA+TGG | - | chr4.2:52313438-52313457 | None:intergenic | 35.0% | |
| GGAAATCAGTTTCTTAAACC+GGG | + | chr4.2:52314082-52314101 | MS.gene027393:CDS | 35.0% | |
| GTAGAAGGTTTATAATCGCA+AGG | - | chr4.2:52314501-52314520 | None:intergenic | 35.0% | |
| GTTCCATCAAAATTCTCATC+CGG | - | chr4.2:52314214-52314233 | None:intergenic | 35.0% | |
| TATAAACCTTCTACCTTTGC+CGG | + | chr4.2:52314507-52314526 | MS.gene027393:CDS | 35.0% | |
| TATTCAGTATGGCTGCAAAT+TGG | - | chr4.2:52314474-52314493 | None:intergenic | 35.0% | |
| TCAACAGGAATATCACTATC+TGG | - | chr4.2:52313833-52313852 | None:intergenic | 35.0% | |
| TCACTATCTGGATCATTATC+AGG | - | chr4.2:52313821-52313840 | None:intergenic | 35.0% | |
| TGAAATGGGTCTCTTTGAAT+TGG | - | chr4.2:52313423-52313442 | None:intergenic | 35.0% | |
| ! | ACAGCTTCCACTACATTTTT+CGG | - | chr4.2:52314289-52314308 | None:intergenic | 35.0% |
| ! | ACTGATTTCCGTTAACTTCA+AGG | - | chr4.2:52314072-52314091 | None:intergenic | 35.0% |
| ! | ATATCAAGTTGTCGAAGGTT+AGG | + | chr4.2:52314263-52314282 | MS.gene027393:CDS | 35.0% |
| ! | CTTTACTGCGAAAGAGTTTT+GGG | + | chr4.2:52314312-52314331 | MS.gene027393:CDS | 35.0% |
| ! | GTTTTGCTTAAGGTTAAGAG+GGG | + | chr4.2:52314160-52314179 | MS.gene027393:CDS | 35.0% |
| ! | TCAATTAGAGCTTTTCCTCT+TGG | + | chr4.2:52313779-52313798 | MS.gene027393:CDS | 35.0% |
| ! | TCCAAATATCAAGTTGTCGA+AGG | + | chr4.2:52314258-52314277 | MS.gene027393:CDS | 35.0% |
| ! | TTTACTGCGAAAGAGTTTTG+GGG | + | chr4.2:52314313-52314332 | MS.gene027393:CDS | 35.0% |
| ! | TTTAGGACATGTAGAGCAAT+TGG | + | chr4.2:52313566-52313585 | MS.gene027393:CDS | 35.0% |
| ! | TTTGTTCAAATCCTTGCTGT+TGG | + | chr4.2:52313950-52313969 | MS.gene027393:CDS | 35.0% |
| ! | TTTTGCTTAAGGTTAAGAGG+GGG | + | chr4.2:52314161-52314180 | MS.gene027393:CDS | 35.0% |
| !! | AGTAAATTTGCTGTTGGGTT+TGG | + | chr4.2:52313716-52313735 | MS.gene027393:CDS | 35.0% |
| !! | CATGTGAGTAAATTTGCTGT+TGG | + | chr4.2:52313710-52313729 | MS.gene027393:CDS | 35.0% |
| !! | GATGAGAATTTTGATGGAAC+TGG | + | chr4.2:52314214-52314233 | MS.gene027393:CDS | 35.0% |
| !! | GCAATTGGTGGATTTGATTA+TGG | + | chr4.2:52313581-52313600 | MS.gene027393:CDS | 35.0% |
| ATGCAAAAACTGCTTCTTGG+TGG | - | chr4.2:52313525-52313544 | None:intergenic | 40.0% | |
| CCAAAACTCTTTCGCAGTAA+AGG | - | chr4.2:52314314-52314333 | None:intergenic | 40.0% | |
| CTTCCAAATTAGGGTAACAC+CGG | + | chr4.2:52314192-52314211 | MS.gene027393:CDS | 40.0% | |
| GGGACAAGACTTCCAAATTA+GGG | + | chr4.2:52314183-52314202 | MS.gene027393:CDS | 40.0% | |
| TCAGAAACAGAATTAGACCC+CGG | - | chr4.2:52314103-52314122 | None:intergenic | 40.0% | |
| TTTGCTTAAGGTTAAGAGGG+GGG | + | chr4.2:52314162-52314181 | MS.gene027393:CDS | 40.0% | |
| ! | ACACCGGATGAGAATTTTGA+TGG | + | chr4.2:52314208-52314227 | MS.gene027393:CDS | 40.0% |
| ! | ATTAGAGCTTTTCCTCTTGG+TGG | + | chr4.2:52313782-52313801 | MS.gene027393:CDS | 40.0% |
| ! | CCTTTACTGCGAAAGAGTTT+TGG | + | chr4.2:52314311-52314330 | MS.gene027393:CDS | 40.0% |
| ! | CTTTTCTCAGACAGCTAGTA+AGG | + | chr4.2:52314381-52314400 | MS.gene027393:CDS | 40.0% |
| ! | TTAGAGCTTTTCCTCTTGGT+GGG | + | chr4.2:52313783-52313802 | MS.gene027393:CDS | 40.0% |
| ! | TTCTTGCTGCTTCTCTTCAA+GGG | + | chr4.2:52313684-52313703 | MS.gene027393:CDS | 40.0% |
| ! | TTTCTTGCTGCTTCTCTTCA+AGG | + | chr4.2:52313683-52313702 | MS.gene027393:CDS | 40.0% |
| !! | GGATAATCTGATGATGGAAG+TGG | - | chr4.2:52313402-52313421 | None:intergenic | 40.0% |
| !!! | GAAGTGGGTTTTGAAGCTTA+AGG | - | chr4.2:52313453-52313472 | None:intergenic | 40.0% |
| AATGTTCCTCCATCCAAAGC+CGG | - | chr4.2:52314529-52314548 | None:intergenic | 45.0% | |
| AGGACATGTAGAGCAATTGG+TGG | + | chr4.2:52313569-52313588 | MS.gene027393:CDS | 45.0% | |
| AGGATTATTGTGGTTTCGGC+CGG | + | chr4.2:52313890-52313909 | MS.gene027393:CDS | 45.0% | |
| ATTTCCTGGTGTGAATGTGC+CGG | + | chr4.2:52313991-52314010 | MS.gene027393:CDS | 45.0% | |
| CAGACAGCTAGTAAGGTTTC+AGG | + | chr4.2:52314388-52314407 | MS.gene027393:CDS | 45.0% | |
| CCAACAGCAATAATCGCTAC+AGG | - | chr4.2:52314415-52314434 | None:intergenic | 45.0% | |
| CCTGTAGCGATTATTGCTGT+TGG | + | chr4.2:52314412-52314431 | MS.gene027393:CDS | 45.0% | |
| GGGGACAAGACTTCCAAATT+AGG | + | chr4.2:52314182-52314201 | MS.gene027393:CDS | 45.0% | |
| GGTTAGGCCGAAAAATGTAG+TGG | + | chr4.2:52314279-52314298 | MS.gene027393:CDS | 45.0% | |
| TTGCTTAAGGTTAAGAGGGG+GGG | + | chr4.2:52314163-52314182 | MS.gene027393:CDS | 45.0% | |
| ! | ATGATGGAAGTGGAGTGTGA+GGG | - | chr4.2:52313392-52313411 | None:intergenic | 45.0% |
| !! | ATTGGCGTTGATTCTCGTTG+AGG | + | chr4.2:52314546-52314565 | MS.gene027393:CDS | 45.0% |
| !! | CATCCGGTGTTACCCTAATT+TGG | - | chr4.2:52314198-52314217 | None:intergenic | 45.0% |
| !! | TTCCTCTTGGTGGGTTTGTA+GGG | + | chr4.2:52313792-52313811 | MS.gene027393:CDS | 45.0% |
| !! | TTCGCGAGATGGATTGCTTT+CGG | + | chr4.2:52314036-52314055 | MS.gene027393:CDS | 45.0% |
| !! | TTTCCTCTTGGTGGGTTTGT+AGG | + | chr4.2:52313791-52313810 | MS.gene027393:CDS | 45.0% |
| AACCCTACAAACCCACCAAG+AGG | - | chr4.2:52313797-52313816 | None:intergenic | 50.0% | |
| ATTCTCGTTGAGGCTGCTAG+GGG | + | chr4.2:52314556-52314575 | MS.gene027393:CDS | 50.0% | |
| GAACAGGCAAACCAACAGCA+AGG | - | chr4.2:52313964-52313983 | None:intergenic | 50.0% | |
| GAGAAAGCTACCTATGGAGG+TGG | + | chr4.2:52314582-52314601 | MS.gene027393:CDS | 50.0% | |
| GAGCAACGGATCATGTCATC+AGG | + | chr4.2:52314604-52314623 | MS.gene027393:CDS | 50.0% | |
| GATTCTCGTTGAGGCTGCTA+GGG | + | chr4.2:52314555-52314574 | MS.gene027393:CDS | 50.0% | |
| GGTGGTGAGTTTCACGTTAG+AGG | - | chr4.2:52313507-52313526 | None:intergenic | 50.0% | |
| TACCTATGGAGGTGGAGCAA+CGG | + | chr4.2:52314590-52314609 | MS.gene027393:CDS | 50.0% | |
| TGATTCTCGTTGAGGCTGCT+AGG | + | chr4.2:52314554-52314573 | MS.gene027393:CDS | 50.0% | |
| !! | GATGATGGAAGTGGAGTGTG+AGG | - | chr4.2:52313393-52313412 | None:intergenic | 50.0% |
| !! | GGCTTTGGATGGAGGAACAT+TGG | + | chr4.2:52314528-52314547 | MS.gene027393:CDS | 50.0% |
| !! | TCGCGAGATGGATTGCTTTC+GGG | + | chr4.2:52314037-52314056 | MS.gene027393:CDS | 50.0% |
| ATCCGTTGCTCCACCTCCAT+AGG | - | chr4.2:52314595-52314614 | None:intergenic | 55.0% | |
| ATGGAAGTGGAGTGTGAGGG+TGG | - | chr4.2:52313389-52313408 | None:intergenic | 55.0% | |
| CCAAAGCCGGCAAAGGTAGA+AGG | - | chr4.2:52314516-52314535 | None:intergenic | 55.0% | |
| CGGGAGAAAGCTACCTATGG+AGG | + | chr4.2:52314579-52314598 | MS.gene027393:CDS | 55.0% | |
| CTGTTGGTGCAGAAGTTGCG+CGG | + | chr4.2:52314428-52314447 | MS.gene027393:CDS | 55.0% | |
| GCAGCTTCAAGCACAGACTG+AGG | - | chr4.2:52313620-52313639 | None:intergenic | 55.0% | |
| GCCGAAAAAGGTCGAACCTC+CGG | - | chr4.2:52314013-52314032 | None:intergenic | 55.0% | |
| TCTCGCGAAGCAGCCGAAAA+AGG | - | chr4.2:52314025-52314044 | None:intergenic | 55.0% | |
| ! | GCCGGAGGTTCGACCTTTTT+CGG | + | chr4.2:52314009-52314028 | MS.gene027393:CDS | 55.0% |
| ! | TTTTCGGCTGCTTCGCGAGA+TGG | + | chr4.2:52314025-52314044 | MS.gene027393:CDS | 55.0% |
| !! | CCTTCTACCTTTGCCGGCTT+TGG | + | chr4.2:52314513-52314532 | MS.gene027393:CDS | 55.0% |
| !! | CGCGAGATGGATTGCTTTCG+GGG | + | chr4.2:52314038-52314057 | MS.gene027393:CDS | 55.0% |
| !! | CTACCTTTGCCGGCTTTGGA+TGG | + | chr4.2:52314517-52314536 | MS.gene027393:CDS | 55.0% |
| !! | GCGAGATGGATTGCTTTCGG+GGG | + | chr4.2:52314039-52314058 | MS.gene027393:CDS | 55.0% |
| ACCTCCGGCACATTCACACC+AGG | - | chr4.2:52313998-52314017 | None:intergenic | 60.0% | |
| CCTCCATCCAAAGCCGGCAA+AGG | - | chr4.2:52314523-52314542 | None:intergenic | 60.0% | |
| GGGCGGGAGAAAGCTACCTA+TGG | + | chr4.2:52314576-52314595 | MS.gene027393:CDS | 60.0% | |
| GTGAGGGTGGAGAAGGAGAG+AGG | - | chr4.2:52313376-52313395 | None:intergenic | 60.0% | |
| GTGGAGTGTGAGGGTGGAGA+AGG | - | chr4.2:52313383-52313402 | None:intergenic | 60.0% | |
| GTTGCGCGGTCGAACATCGA+TGG | + | chr4.2:52314442-52314461 | MS.gene027393:CDS | 60.0% | |
| TCCTGGTGTGAATGTGCCGG+AGG | + | chr4.2:52313994-52314013 | MS.gene027393:CDS | 60.0% | |
| !! | CCTTTGCCGGCTTTGGATGG+AGG | + | chr4.2:52314520-52314539 | MS.gene027393:CDS | 60.0% |
| CTCGTTGAGGCTGCTAGGGG+CGG | + | chr4.2:52314559-52314578 | MS.gene027393:CDS | 65.0% | |
| TCGTTGAGGCTGCTAGGGGC+GGG | + | chr4.2:52314560-52314579 | MS.gene027393:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 52313362 | 52314708 | 52313362 | ID=MS.gene027393 |
| chr4.2 | mRNA | 52313362 | 52314708 | 52313362 | ID=MS.gene027393.t1;Parent=MS.gene027393 |
| chr4.2 | exon | 52313362 | 52314708 | 52313362 | ID=MS.gene027393.t1.exon1;Parent=MS.gene027393.t1 |
| chr4.2 | CDS | 52313362 | 52314708 | 52313362 | ID=cds.MS.gene027393.t1;Parent=MS.gene027393.t1 |
| Gene Sequence |
| Protein sequence |
