AlfalfaGEDB | MS.gene027519

M. sativa cultivar XinJiangDaYe / MS.gene027519

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027519.t1	XP_003613381.1	94.9	686	35	0	1	686	1	686	0.00E+00	1237.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027519.t1	Q9M2S4	56.9	659	270	8	8	657	7	660	2.5e-204	713.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027519.t1	G7K494	94.9	686	35	0	1	686	1	686	0.0e+00	1237.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene000819	MS.gene027519	PPI
MS.gene027519	MS.gene89346	PPI
MS.gene027519	MS.gene055225	PPI
MS.gene027519	MS.gene46138	PPI
MS.gene027519	MS.gene89348	PPI
MS.gene027519	MS.gene000832	PPI
MS.gene027519	MS.gene000823	PPI
MS.gene027519	MS.gene46146	PPI
MS.gene027519	MS.gene46132	PPI
MS.gene027519	MS.gene89350	PPI

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene027519.t1	MTR_5g035910	95.627	686	30	0	1	686	1	686	1280
MS.gene027519.t1	MTR_7g063030	80.240	668	126	6	1	666	1	664	1089
MS.gene027519.t1	MTR_7g063010	76.676	686	153	5	4	686	1	682	1077
MS.gene027519.t1	MTR_7g063030	81.270	630	113	5	39	666	32	658	1050
MS.gene027519.t1	MTR_3g068025	60.703	626	237	6	4	624	6	627	750
MS.gene027519.t1	MTR_7g062950	56.039	621	262	6	9	624	5	619	666
MS.gene027519.t1	MTR_1g052275	55.112	626	267	8	7	624	2	621	659
MS.gene027519.t1	MTR_7g062890	55.377	623	266	8	7	624	2	617	652
MS.gene027519.t1	MTR_7g062750	53.600	625	276	8	7	623	2	620	649
MS.gene027519.t1	MTR_7g062940	54.327	624	272	9	7	624	2	618	644

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene027519.t1	AT3G55550	59.042	647	251	9	20	657	19	660	752
MS.gene027519.t1	AT3G53810	53.045	624	276	11	22	633	22	640	623
MS.gene027519.t1	AT2G37710	52.809	623	279	10	37	648	36	654	615
MS.gene027519.t1	AT4G29050	51.939	593	272	10	43	626	52	640	601
MS.gene027519.t1	AT4G29050	51.939	593	272	10	43	626	38	626	601
MS.gene027519.t1	AT4G02420	50.240	625	291	9	22	632	23	641	595
MS.gene027519.t1	AT1G70110	50.754	597	280	9	39	626	33	624	595
MS.gene027519.t1	AT4G02410	50.407	615	289	8	22	624	24	634	585
MS.gene027519.t1	AT3G45430	48.726	628	299	14	7	624	6	620	561
MS.gene027519.t1	AT3G45430	48.726	628	299	14	7	624	6	620	561

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 151 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCAAGATACTGAAG+AGG	0.590768	5.4:+25661596	None:intergenic
AAAGAGCTACTTGGGCAGGG+TGG	0.659294	5.4:-25660909	MS.gene027519:CDS
AAATCACACAAACAATGAAA+TGG	0.334059	5.4:-25661783	MS.gene027519:CDS
AAATGGAACAATAGTAAAAC+TGG	0.370381	5.4:+25661926	None:intergenic
AACATCTTGATATCAAAAGT+GGG	0.597033	5.4:-25661394	MS.gene027519:CDS
AACATTAGGCTATTTGGCAC+CGG	0.534642	5.4:-25660427	MS.gene027519:CDS
AACCATGGGAGCTTGAAGTT+GGG	0.500898	5.4:-25660986	MS.gene027519:CDS
AACTCTTCTTGTAATGCCTT+AGG	0.553681	5.4:+25660309	None:intergenic
AAGAGTTAGTGTTGGTGGAT+TGG	0.473990	5.4:-25660293	MS.gene027519:CDS
AAGGACAAGGTTGGTTTATT+TGG	0.208992	5.4:+25661293	None:intergenic

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAATGAGTAAAAAGCA+TGG	+	chr5.4:25660112-25660131	None:intergenic	30.0%
AATTCATCAAAACCTTGTTG+TGG	+	chr5.4:25661817-25661836	None:intergenic	30.0%
ACACAGAAATTGTGTTAAGT+TGG	-	chr5.4:25661218-25661237	MS.gene027519:CDS	30.0%
ATGAAAAATAGGCGATAGAT+CGG	+	chr5.4:25660606-25660625	None:intergenic	30.0%
ATTACAAGAAGAGTTAGTGT+TGG	-	chr5.4:25661567-25661586	MS.gene027519:CDS	30.0%
CAAATTCAACAGCAAAAAGA+TGG	+	chr5.4:25660328-25660347	None:intergenic	30.0%
CAACATCTTGATATCAAAAG+TGG	-	chr5.4:25660473-25660492	MS.gene027519:CDS	30.0%
CACAGAAATTGTGTTAAGTT+GGG	-	chr5.4:25661219-25661238	MS.gene027519:CDS	30.0%
GATATCAATGATAACCATGT+TGG	-	chr5.4:25660374-25660393	MS.gene027519:CDS	30.0%
GTATTGTGTTCTATAGCAAT+AGG	-	chr5.4:25660818-25660837	MS.gene027519:CDS	30.0%

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	25659915	25661975	25659915	ID=MS.gene027519
chr5.4	mRNA	25659915	25661975	25659915	ID=MS.gene027519.t1;Parent=MS.gene027519
chr5.4	exon	25659915	25661975	25659915	ID=MS.gene027519.t1.exon1;Parent=MS.gene027519.t1
chr5.4	CDS	25659915	25661975	25659915	ID=cds.MS.gene027519.t1;Parent=MS.gene027519.t1

Gene Sequence

>MS.gene027519

ATGCCAACCCTTGTTCAATTCTTGATACCAGTTTTACTATTGTTCCATTTTGTGCCAGTTTTATCCCAGGTTAACCAGTTCTTGTATGCAGGATTCAAGGATGTTGGTCCCAGCAATCTAACCTTGAATGGTTTTGCACAGATAGAGAAAAATGGTATGATAAGATTAACAAATCACACAAACAATGAAATGGGCCATGCTTTTTACTCATTACCTTTTCAGCTAAGAAACTCGACAACTCGTAAAGCTTACTCATTTTCTTCATCTTTTGCTCTTGCTGTTGTCCCTGAGTATCCTAATATAGGTGGTCATGGCATGGCTTTCACAATAGCAACTACCAAGGATCTCAGAGGTTCACCTCTTCAGTATCTTGGTCTTTTCAATTCAAGTAATATTGGTAATTTTTCAAACCATCTTTTTGCTGTTGAATTTGACACTGTCCTAGACTTTGGGTTTGATGATATCAATGATAACCATGTTGGAATAGACATCAATGGTTTGAAATCCAATGCATGTATTACTGCAGGATATTACACTGATCATGGTTCAACCAAACAACAACATCTTGATATCAAAAGTGGGAAACCTATTCTAGCTTGGGTTGATTATGATTCTTCAATAAATCTTGTTAGTGTTACACTTTCTCCAACTTCAACCAAACCAAATAAACCAACCTTGTCCTTTCATACCGATCTATCGCCTATTTTTCATGATACTATGTATGTTGGATTCTCTGCATCAACTGGTTTGCAGCTTGCTAGCTCTCACTACATCTTGGGTTGGAGCTTTAATATCAACGGACCGGCACCACTACTTGATTTGTCTTCACTCCCACAACCTCCTCGACCAAAGAAGAAAAAAACTTCTATGATAATCGGTGTTTCGGTCACAGTTTTTGTTGTTGTATTGTGTTCTATAGCAATAGGTATTTACATTTTCAGAAAAATCAAGAATGCTGATGTAATAGAACCATGGGAGCTTGAAGTTGGGCCGCATAGATACTCCTATCAAGAGCTCAACAAAGCAACAAAAGGTTTCAAGGAGAAAGAGCTACTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAGGGGACGTTGCCAGATTCAAGTATTCAAGTAGCTGTTAAGAGATTTTCACATGACTCAAAACAAGGGCTAAGGGAATTTGTGTCTGAAATAGCCAGCATAGGCCGGCTTCGTCACAGGAATTTAGTTCAGTTACTTGGATGGTGTCGCCGCAAAAGCGACCTCCTACTTGTGTATGACTTCATGGCTAATGGAAGCTTAGATAAATACTTGTTCGAAAACACAGAAATTGTGTTAAGTTGGGAACAAAGATTCAAGATAATAAAGGGTGTTGCTTCGGGTCTTTTGTATCTGCATGAAGGCTATGAGCAAGTGGTAATACACAGAGATGTTAAGGCTAGCAATGTTCTGTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGTCTGGCAAGGTTATATGAACATGGTGCTAATCCAGGGACCACAAGAGTGGTGGGAACATTAGGCTATTTGGCACCGGAGTTGCCTAGAACAGGAAGAGCATCTACGAATTCAGACGTTTTTGCATTTGGTGCACTTCTGCTTGAGGTTGCTTGTGGGAGAAGGCCTATTGAGCCTAAGGCATTACAAGAAGAGTTAGTGTTGGTGGATTGGGTGTGGGAAAAGTACAAAGATGAAAGAATACTTGAAGTAATGGATCGAAAATTGAATGGAAATTTTGATGAAAGTGAGGTAGTGCTTGTGCTGAAATTGGGATTGCTATGCTCAAATGATGTTCCTATTATAAGACCTAGCATGAGACAAGTAATGAGGATTTTGGATGGAGAAGTTGAGTTGCCTGATGATTTGAGTAATCCAGGAGTTATTGATCCACAACAAGGTTTTGATGAATTTTTGCACTCTGCATATTCCTCATTTGATATCATGGATTCAAGCTCTTATCTTGAAAATAGATATACTGATGGTACTTGTTATATCTCTTTTGAGAGTTCACCTCAATCACTTCTCAATTCTAGAGAGGAAACAAGGTGA

Protein sequence

>MS.gene027519.t1

MPTLVQFLIPVLLLFHFVPVLSQVNQFLYAGFKDVGPSNLTLNGFAQIEKNGMIRLTNHTNNEMGHAFYSLPFQLRNSTTRKAYSFSSSFALAVVPEYPNIGGHGMAFTIATTKDLRGSPLQYLGLFNSSNIGNFSNHLFAVEFDTVLDFGFDDINDNHVGIDINGLKSNACITAGYYTDHGSTKQQHLDIKSGKPILAWVDYDSSINLVSVTLSPTSTKPNKPTLSFHTDLSPIFHDTMYVGFSASTGLQLASSHYILGWSFNINGPAPLLDLSSLPQPPRPKKKKTSMIIGVSVTVFVVVLCSIAIGIYIFRKIKNADVIEPWELEVGPHRYSYQELNKATKGFKEKELLGQGGFGRVYKGTLPDSSIQVAVKRFSHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRKSDLLLVYDFMANGSLDKYLFENTEIVLSWEQRFKIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPGTTRVVGTLGYLAPELPRTGRASTNSDVFAFGALLLEVACGRRPIEPKALQEELVLVDWVWEKYKDERILEVMDRKLNGNFDESEVVLVLKLGLLCSNDVPIIRPSMRQVMRILDGEVELPDDLSNPGVIDPQQGFDEFLHSAYSSFDIMDSSSYLENRYTDGTCYISFESSPQSLLNSREETR