AlfalfaGEDB | MS.gene028267

M. sativa cultivar XinJiangDaYe / MS.gene028267

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: PF00295.20 PF12708.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028267.t1	XP_013457379.1	94.5	471	16	1	1	471	1	461	1.10E-258	902.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028267.t1	Q949Z1	77.5	386	87	0	73	458	78	463	1.0e-188	661.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028267.t1	A0A072V005	94.5	471	16	1	1	471	1	461	7.7e-259	902.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene028267	MS.gene013308	PPI
MS.gene049281	MS.gene028267	PPI
MS.gene054959	MS.gene028267	PPI
MS.gene06403	MS.gene028267	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028267.t1	MTR_4g094715	96.178	471	8	1	1	471	1	461	0.0	931
MS.gene028267.t1	MTR_2g032710	74.735	471	111	3	1	471	1	463	0.0	707
MS.gene028267.t1	MTR_1g086390	63.333	390	141	1	74	461	80	469	0.0	542
MS.gene028267.t1	MTR_7g110050	60.621	419	161	3	53	469	46	462	0.0	539
MS.gene028267.t1	MTR_5g034090	43.552	473	226	7	21	458	56	522	5.13e-126	377
MS.gene028267.t1	MTR_8g065010	46.604	427	194	7	58	458	91	509	3.49e-125	374
MS.gene028267.t1	MTR_6g005630	46.348	397	195	6	75	470	45	424	6.81e-122	362
MS.gene028267.t1	MTR_6g005630	43.577	397	183	8	75	470	45	401	8.57e-108	325
MS.gene028267.t1	MTR_5g033680	40.250	400	226	6	60	456	50	439	2.19e-104	319
MS.gene028267.t1	MTR_8g065030	41.117	394	219	6	74	465	64	446	4.40e-102	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028267.t1	AT1G48100	68.898	463	139	3	1	458	1	463	0.0	657
MS.gene028267.t1	AT1G02460	61.381	391	146	3	74	459	88	478	5.26e-180	513
MS.gene028267.t1	AT1G56710	57.213	409	169	4	54	459	28	433	6.43e-170	485
MS.gene028267.t1	AT4G01890	55.583	403	173	3	63	460	53	454	8.25e-167	478
MS.gene028267.t1	AT5G14650	47.179	390	190	6	75	461	51	427	1.06e-120	360
MS.gene028267.t1	AT1G60590	43.614	415	201	6	75	462	123	531	7.14e-118	356
MS.gene028267.t1	AT1G10640	44.743	409	196	6	74	458	118	520	3.19e-116	352
MS.gene028267.t1	AT3G26610	38.925	465	256	10	1	457	7	451	4.21e-107	326
MS.gene028267.t1	AT1G80170	42.932	382	206	6	71	449	49	421	4.82e-107	325
MS.gene028267.t1	AT1G70500	41.667	396	218	6	74	467	66	450	2.23e-106	324

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Find 109 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGTCAGGACCATG+TGG	0.660723	4.2:-16952130	MS.gene028267:CDS
AAAATTTGAGAACATTCAAA+TGG	0.449085	4.2:-16950811	MS.gene028267:CDS
AAACTTAGCCCCAACACTGA+TGG	0.554244	4.2:-16951485	MS.gene028267:CDS
AAAGACATGGCAAGGTGGAA+TGG	0.501829	4.2:-16950850	MS.gene028267:CDS
AAAGATCACCCACAGTCTCA+GGG	0.643345	4.2:+16950484	None:intergenic
AACAATAGTATTGGTCTATA+AGG	0.326820	4.2:+16950769	None:intergenic
AACATGGATTCCATCAGTGT+TGG	0.447865	4.2:+16951475	None:intergenic
AACATTCAAATGGAGAATGT+AGG	0.564605	4.2:-16950801	MS.gene028267:CDS
AAGACATGGCAAGGTGGAAT+GGG	0.468398	4.2:-16950849	MS.gene028267:CDS
AAGGAAATGGAGATCAATGG+TGG	0.551216	4.2:-16952400	MS.gene028267:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTCAAATGGAGAATGT+AGG	-	chr4.2:16952787-16952806	MS.gene028267:CDS	30.0%
ACATATTGATCATTACTCCT+TGG	+	chr4.2:16952066-16952085	None:intergenic	30.0%
ACTAAACTTCGTGACAAAAT+TGG	+	chr4.2:16952553-16952572	None:intergenic	30.0%
ATTAGGGACCAAAAACAAAA+TGG	+	chr4.2:16951646-16951665	None:intergenic	30.0%
CAGTTCCACATGATATTTAA+TGG	-	chr4.2:16952037-16952056	MS.gene028267:intron	30.0%
CATAAGCATTCCAACAAAAA+GGG	+	chr4.2:16953032-16953051	None:intergenic	30.0%
CCAATACTATTGTTTGACAA+AGG	-	chr4.2:16952828-16952847	MS.gene028267:CDS	30.0%
CCAATTAATTGTTTAAGGGA+AGG	-	chr4.2:16953078-16953097	MS.gene028267:CDS	30.0%
CCTTCCCTTAAACAATTAAT+TGG	+	chr4.2:16953081-16953100	None:intergenic	30.0%
CCTTTGTCAAACAATAGTAT+TGG	+	chr4.2:16952831-16952850	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	16950461	16953149	16950461	ID=MS.gene028267
chr4.2	mRNA	16950461	16953149	16950461	ID=MS.gene028267.t1;Parent=MS.gene028267
chr4.2	exon	16952745	16953149	16952745	ID=MS.gene028267.t1.exon1;Parent=MS.gene028267.t1
chr4.2	CDS	16952745	16953149	16952745	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1
chr4.2	exon	16952376	16952543	16952376	ID=MS.gene028267.t1.exon2;Parent=MS.gene028267.t1
chr4.2	CDS	16952376	16952543	16952376	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1
chr4.2	exon	16952120	16952164	16952120	ID=MS.gene028267.t1.exon3;Parent=MS.gene028267.t1
chr4.2	CDS	16952120	16952164	16952120	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1
chr4.2	exon	16951429	16951636	16951429	ID=MS.gene028267.t1.exon4;Parent=MS.gene028267.t1
chr4.2	CDS	16951429	16951636	16951429	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1
chr4.2	exon	16951217	16951298	16951217	ID=MS.gene028267.t1.exon5;Parent=MS.gene028267.t1
chr4.2	CDS	16951217	16951298	16951217	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1
chr4.2	exon	16950461	16950968	16950461	ID=MS.gene028267.t1.exon6;Parent=MS.gene028267.t1
chr4.2	CDS	16950461	16950968	16950461	ID=cds.MS.gene028267.t1;Parent=MS.gene028267.t1

Gene Sequence

>MS.gene028267

ATGGATCTCATTCATAGACTATTTATTCTTTGGATTACATTTATACTACTTAATTTGAGAAATGTGGATGGAAGGAACCACTTTCACACCAAGCAAAAGAAAGTATCTTCCCTTGTTCCTTCTAAGTCTTCAAATGATCCAGAAAATCCTTCCAACTCTTCTCCTAGTGTTCCTTCTGACCCTTATCCAAATGATCCTCGGGATTCGTCTTCGGACTGTATTTTCGATGTTACATCATTTGGAGCAATTGGAGATGGTTCAGCTGATGACACACCTGCATTCAAGAAAGCATGGAAAGCAGCTTGTGCTGTAGAGTCAGGAGTTCTTCTGGTTCCAGAAAATTACACTTTTATGATCACTTCAATTATTTTTTCAGGTCCATGCAAACCAGGATTAGTATTTCAAGTAAGTAAGATAACTTTTTCAATTTCTAATTTCACCATATATATCATTTATTTTGTTACAAACAAATTATTATTTCTTAAATGCATAAATATCAACTTAATAAAATATGATTGGACGTAAGTGTAAAACTGGTTTAACGTTAGTGCGAATTCTTACTATTATAATAATATGAAATTATTAACAAAATTGAAATGTAATCAGGTGGATGGTATGCTAATGGCACCAGATGGACCTGATTCATGGCCAGAGGCAGATAGCAGAAATCAATGGCTTGTGTTCTATAAACTTGACCAAATGAGTTTTAATGGTACAGGAACCATTGAAGGAAATGGAGATCAATGGTGGGATCTTCCCTGCAAACCTCACAGGGTAAACTTTTTTGAACATTATTCAAGCATATCTCACCATGTAAATATTTATTTATAGAGATATTTTAAAAACTAATTTAAGAAAGTGACATTATAGTGTAATTTGTTTTACACGGTGAATGTGTACAAATTAATTTCTATTACTATTGTTGTATGCATCTAATGTTGATTGATACACACCACTAACCAAAAATAAAACTTGGCATTTTCAGGGTCCAGATGGAAAAACTTTGTCAGGACCATGTGGAAGTCCAGCTGTGAGTAAAACCATTCAGCTCAGTCATTAAATAACATTCTATATGTAATTAATATAGGGTGAAATAAATTTTTTTATCGTAAAAATATAGAAATTTTTGATTATATAGTCCATAAAAATAAAAACGAGATGTTTTCTTCCTATCAAAATTTTCCATTTTGTTTTTGGTCCCTAATGACCAATTTATGTTTATGCTAATGTCAACATAATTATGATCATTTTTATGTTTCAGATGTATTCAATGTATCTCCACCCCCTGAGTCCATGTTATATTAAAGAAATGTCAAAAACATGTCAAAATTATATCAATTAGGGACAAAAAATGAAACAAAAATTTTCGAGGGACAAGAATATCCTATTTTTATTTTTAAGGACTAAAATTAAAATTCGTTTTATTTTTAGGGGAAGAAAAACTTATTTAATTCAATAATATATATATTACTAGCTAGTGTCTTAAAGTTGTTTTTAATTTTCATATCTATAGATGATACGGTTCTTCATGAGCTCCAATTTGTATGTGAATGGACTAAAAATTCAAAACAGTCCTCAGTTCCACATGATATTTAATGGCTGCCAAGGAGTAATGATCAATATGTTATCCATTTCTGCACCAAAACTTAGCCCCAACACTGATGGAATCCATGTTGAAAACTCACAAGATGTTGGGATATACAACTCCTTAATAAGCAATGGTAATTAATGGCTATAATCCAATATTAATTTACTTACCCAGTTTTATTGTTTCTATGTTAATTTTATTAATTTTACCATTTTTATATAAGCAAGCAGCTTAATATAATAACATGATTTGATTTTGAACAGGTGATGATTGCATTTCAATTGGACCCGGGACTTCAAATGTGGAAATAGCTGGTGTAACTTGTGGTCCTAGCCACGGGATTAGGTACATTACATAATCTATTCTTGTTTTGTTGATTAATAAAAAAATTAGTGTCACTACCAAGTGAAACAACATGGTTTGCAACAATACCAGATCCTAATTTTTCTATTCAAAATATTACTATTGACAAAATTTAGAGGTGAAATATGAAATCGGTCTCCAATTTTGTCACGAAGTTTAGTTTAGTTTAATTTTCTGTAGTACATATCAGCATGAGTCACTAAACTTAATGTTTTGTTAATTTTGTACAGCATAGGAAGTCTTGGTGTGCACAATTCCCAAGCATGTGTCTCAAACTTAACCGTCCGTGACACAGTCATAAGAGAATCAGACAATGGACTAAGAATAAAGACATGGCAAGGTGGAATGGGATCTGTGTCAAATTTAAAATTTGAGAACATTCAAATGGAGAATGTAGGAAACTGCATCCTTATAGACCAATACTATTGTTTGACAAAGGAATGTCTTAACCAAACATCAGCAGTACATGTTAATGATGTGTCCTACAAAAACATTAAGGGTACATATGATGTTAGAACTGCTCCTATTCATTTTGCTTGTAGTGACACTGTTGCTTGTACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCATTTGAAGGTGAATTGTTGGATGACCCTTTTTGTTGGAATGCTTATGGAGATCAAGAGACTTTGACTATACCTCCAATTAATTGTTTAAGGGAAGGTGACCCTGAGACTGTGGGTGATCTTTCTACATATCAATGTAGTAATTAG

Protein sequence

>MS.gene028267.t1

MDLIHRLFILWITFILLNLRNVDGRNHFHTKQKKVSSLVPSKSSNDPENPSNSSPSVPSDPYPNDPRDSSSDCIFDVTSFGAIGDGSADDTPAFKKAWKAACAVESGVLLVPENYTFMITSIIFSGPCKPGLVFQVDGMLMAPDGPDSWPEADSRNQWLVFYKLDQMSFNGTGTIEGNGDQWWDLPCKPHRGPDGKTLSGPCGSPAMIRFFMSSNLYVNGLKIQNSPQFHMIFNGCQGVMINMLSISAPKLSPNTDGIHVENSQDVGIYNSLISNGDDCISIGPGTSNVEIAGVTCGPSHGISIGSLGVHNSQACVSNLTVRDTVIRESDNGLRIKTWQGGMGSVSNLKFENIQMENVGNCILIDQYYCLTKECLNQTSAVHVNDVSYKNIKGTYDVRTAPIHFACSDTVACTNITLSEVELLPFEGELLDDPFCWNAYGDQETLTIPPINCLREGDPETVGDLSTYQCSN