Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028536.t1 | AES90515.1 | 97.8 | 357 | 8 | 0 | 1 | 357 | 1 | 357 | 1.40E-197 | 698.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028536.t1 | Q9LPM9 | 62.4 | 359 | 126 | 4 | 1 | 357 | 1 | 352 | 7.5e-128 | 458.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028536.t1 | G7JT01 | 97.8 | 357 | 8 | 0 | 1 | 357 | 1 | 357 | 9.8e-198 | 698.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028536 | MS.gene09632 | PPI |
| MS.gene015287 | MS.gene028536 | PPI |
| MS.gene21440 | MS.gene028536 | PPI |
| MS.gene43507 | MS.gene028536 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028536.t1 | MTR_4g092590 | 97.759 | 357 | 8 | 0 | 1 | 357 | 1 | 357 | 0.0 | 717 |
| MS.gene028536.t1 | MTR_3g103580 | 59.770 | 348 | 135 | 3 | 12 | 357 | 43 | 387 | 2.21e-155 | 442 |
| MS.gene028536.t1 | MTR_5g014960 | 59.375 | 352 | 138 | 3 | 7 | 356 | 59 | 407 | 5.65e-150 | 429 |
| MS.gene028536.t1 | MTR_3g103580 | 61.111 | 324 | 122 | 2 | 36 | 357 | 2 | 323 | 1.13e-149 | 425 |
| MS.gene028536.t1 | MTR_4g092580 | 53.760 | 359 | 162 | 2 | 1 | 357 | 1 | 357 | 1.91e-142 | 408 |
| MS.gene028536.t1 | MTR_3g103580 | 60.772 | 311 | 117 | 3 | 12 | 320 | 43 | 350 | 1.21e-140 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028536.t1 | AT1G50110 | 62.396 | 359 | 126 | 4 | 1 | 357 | 1 | 352 | 6.05e-166 | 468 |
| MS.gene028536.t1 | AT1G50090 | 60.563 | 355 | 137 | 2 | 4 | 357 | 3 | 355 | 9.95e-162 | 457 |
| MS.gene028536.t1 | AT1G10070 | 58.708 | 356 | 142 | 3 | 5 | 357 | 35 | 388 | 3.31e-159 | 451 |
| MS.gene028536.t1 | AT1G10070 | 58.708 | 356 | 142 | 3 | 5 | 357 | 35 | 388 | 3.31e-159 | 451 |
| MS.gene028536.t1 | AT1G50110 | 63.950 | 319 | 112 | 2 | 40 | 357 | 1 | 317 | 3.08e-154 | 436 |
| MS.gene028536.t1 | AT1G10060 | 58.824 | 357 | 142 | 3 | 2 | 356 | 30 | 383 | 2.81e-153 | 436 |
| MS.gene028536.t1 | AT1G10060 | 59.104 | 357 | 141 | 3 | 2 | 356 | 126 | 479 | 1.18e-151 | 436 |
| MS.gene028536.t1 | AT5G65780 | 58.974 | 351 | 138 | 4 | 9 | 356 | 67 | 414 | 5.91e-150 | 429 |
| MS.gene028536.t1 | AT1G10070 | 60.938 | 320 | 121 | 2 | 40 | 357 | 1 | 318 | 1.87e-149 | 424 |
| MS.gene028536.t1 | AT3G49680 | 59.654 | 347 | 134 | 4 | 14 | 356 | 66 | 410 | 3.13e-148 | 424 |
| MS.gene028536.t1 | AT3G49680 | 59.654 | 347 | 134 | 4 | 14 | 356 | 68 | 412 | 4.16e-148 | 424 |
| MS.gene028536.t1 | AT3G19710 | 55.752 | 339 | 147 | 2 | 20 | 357 | 15 | 351 | 1.55e-146 | 418 |
| MS.gene028536.t1 | AT1G10060 | 61.442 | 319 | 119 | 2 | 40 | 356 | 1 | 317 | 5.73e-143 | 408 |
| MS.gene028536.t1 | AT1G10060 | 59.317 | 322 | 126 | 3 | 2 | 321 | 30 | 348 | 9.20e-137 | 394 |
| MS.gene028536.t1 | AT1G10060 | 59.627 | 322 | 125 | 3 | 2 | 321 | 126 | 444 | 2.84e-135 | 394 |
| MS.gene028536.t1 | AT1G10060 | 57.778 | 270 | 109 | 3 | 2 | 269 | 30 | 296 | 4.83e-111 | 326 |
| MS.gene028536.t1 | AT1G10060 | 57.778 | 270 | 109 | 3 | 2 | 269 | 126 | 392 | 1.42e-109 | 326 |
Find 94 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCATTGATTTGGGTTATA+AGG | 0.149101 | 4.1:-20562074 | MS.gene028536:intron |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | 4.1:+20563288 | None:intergenic |
| CATAGACATCGCCATTGATT+TGG | 0.259021 | 4.1:-20562083 | MS.gene028536:CDS |
| TGTTGCATCTGTAACATATA+AGG | 0.310394 | 4.1:-20561852 | MS.gene028536:CDS |
| AAAATTATGCTGACATCAAT+TGG | 0.313617 | 4.1:-20564000 | MS.gene028536:CDS |
| CATCGTTTCCTCCACTGATA+TGG | 0.317110 | 4.1:+20561922 | None:intergenic |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4.1:-20562968 | MS.gene028536:CDS |
| ATCTTCACTCCGGCAATAGA+TGG | 0.342656 | 4.1:-20562139 | MS.gene028536:CDS |
| TATCTTAGGCCTTTGCTGAT+AGG | 0.349392 | 4.1:-20562954 | MS.gene028536:CDS |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4.1:-20562352 | MS.gene028536:CDS |
| ATAGACATCGCCATTGATTT+GGG | 0.368721 | 4.1:-20562082 | MS.gene028536:CDS |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | 4.1:+20562870 | None:intergenic |
| GCTGCTGGTATCATAAACTA+TGG | 0.421561 | 4.1:-20563860 | MS.gene028536:CDS |
| AGGCCTTTGCTGATAGGAAC+AGG | 0.426821 | 4.1:-20562948 | MS.gene028536:CDS |
| TGCCAATTTCTCAATCTACT+TGG | 0.427171 | 4.1:+20561575 | None:intergenic |
| ATACTGGTTGGAATACAAAC+AGG | 0.434484 | 4.1:-20561628 | MS.gene028536:CDS |
| TCAGTGTCCCTTAAAATAGA+AGG | 0.444685 | 4.1:+20564171 | None:intergenic |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4.1:-20562681 | MS.gene028536:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4.1:+20563894 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4.1:+20563404 | None:intergenic |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | 4.1:-20563938 | MS.gene028536:CDS |
| AGAATAGATCCATCTATTGC+CGG | 0.463647 | 4.1:+20562130 | None:intergenic |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4.1:-20562885 | MS.gene028536:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4.1:-20562990 | MS.gene028536:intron |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4.1:+20563420 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4.1:-20563296 | MS.gene028536:intron |
| TGCAGAGCTGAATATAAAAC+AGG | 0.474986 | 4.1:-20561682 | MS.gene028536:intron |
| TTTGTATAGGGAATCTTTGA+GGG | 0.475038 | 4.1:-20563460 | MS.gene028536:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4.1:-20563383 | MS.gene028536:CDS |
| ATCAATGGCGATGTCTATGA+TGG | 0.477143 | 4.1:+20562087 | None:intergenic |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4.1:+20562972 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4.1:-20563433 | MS.gene028536:CDS |
| ATAGATGGATCTATTCTGCC+TGG | 0.500850 | 4.1:-20562124 | MS.gene028536:CDS |
| TACCTTATAACCCAAATCAA+TGG | 0.507754 | 4.1:+20562072 | None:intergenic |
| ATAGGAACAGGAGCTGCATT+AGG | 0.514522 | 4.1:-20562936 | MS.gene028536:CDS |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4.1:-20563382 | MS.gene028536:CDS |
| AACAGGAGCTGCATTAGGCT+TGG | 0.520575 | 4.1:-20562931 | MS.gene028536:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4.1:+20563391 | None:intergenic |
| TAGATGGATCTATTCTGCCT+GGG | 0.527089 | 4.1:-20562123 | MS.gene028536:CDS |
| AAATTATGCTGACATCAATT+GGG | 0.528575 | 4.1:-20563999 | MS.gene028536:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4.1:-20562687 | MS.gene028536:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4.1:-20562983 | MS.gene028536:CDS |
| AAACTACGAGGAATACTGGT+TGG | 0.534155 | 4.1:-20561640 | MS.gene028536:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | 4.1:+20563953 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4.1:-20562984 | MS.gene028536:CDS |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4.1:-20563902 | MS.gene028536:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4.1:-20562696 | MS.gene028536:CDS |
| GTTGTGTATGCCGTCACCAT+CGG | 0.553830 | 4.1:-20563350 | MS.gene028536:CDS |
| AGGAAGACTAAACTTAAAAG+TGG | 0.553988 | 4.1:-20562724 | MS.gene028536:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4.1:+20563863 | None:intergenic |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4.1:+20562978 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4.1:-20563875 | MS.gene028536:CDS |
| CTGTAACATATAAGGAAACA+AGG | 0.572784 | 4.1:-20561844 | MS.gene028536:intron |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4.1:+20562372 | None:intergenic |
| TGGTATCATAAACTATGGAC+AGG | 0.579973 | 4.1:-20563855 | MS.gene028536:intron |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4.1:+20562900 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4.1:-20562388 | MS.gene028536:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4.1:-20563381 | MS.gene028536:CDS |
| AACTGCTCAACCGATGGTGA+CGG | 0.583708 | 4.1:+20563340 | None:intergenic |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4.1:+20563864 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4.1:-20563882 | MS.gene028536:CDS |
| GGAAAATGATATCTTCACTC+CGG | 0.596052 | 4.1:-20562149 | MS.gene028536:CDS |
| AATACAAACAGGGCGTATTG+AGG | 0.599236 | 4.1:-20561617 | MS.gene028536:CDS |
| AGCAACTGGAAACAATATTG+AGG | 0.599305 | 4.1:-20562338 | MS.gene028536:CDS |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4.1:-20562678 | MS.gene028536:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4.1:-20563432 | MS.gene028536:CDS |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4.1:-20562690 | MS.gene028536:CDS |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4.1:-20562305 | MS.gene028536:intron |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4.1:-20561933 | MS.gene028536:CDS |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4.1:+20562906 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4.1:-20561896 | MS.gene028536:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | 4.1:-20563995 | MS.gene028536:CDS |
| TAAAATAGAAGGAGGAGCCA+TGG | 0.616010 | 4.1:+20564182 | None:intergenic |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4.1:-20563297 | MS.gene028536:CDS |
| GCTCCTGTTCCTATCAGCAA+AGG | 0.618333 | 4.1:+20562945 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4.1:+20563895 | None:intergenic |
| TCAACAAACTGCTCAACCGA+TGG | 0.620399 | 4.1:+20563334 | None:intergenic |
| AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | 4.1:-20562721 | MS.gene028536:CDS |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4.1:-20562649 | MS.gene028536:intron |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4.1:-20563380 | MS.gene028536:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | 4.1:-20562989 | MS.gene028536:intron |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4.1:-20561930 | MS.gene028536:CDS |
| AACTGGAAACAATATTGAGG+AGG | 0.649999 | 4.1:-20562335 | MS.gene028536:CDS |
| GTGTCCCTTAAAATAGAAGG+AGG | 0.657112 | 4.1:+20564174 | None:intergenic |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4.1:+20563395 | None:intergenic |
| AGATGGATCTATTCTGCCTG+GGG | 0.660994 | 4.1:-20562122 | MS.gene028536:CDS |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | 4.1:+20562871 | None:intergenic |
| ACACTGAAGATGGTTCTCAA+AGG | 0.671471 | 4.1:-20564155 | MS.gene028536:intron |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4.1:+20562975 | None:intergenic |
| ATATGTTACAGATGCAACAG+AGG | 0.681902 | 4.1:+20561856 | None:intergenic |
| TACTGGTTGGAATACAAACA+GGG | 0.699480 | 4.1:-20561627 | MS.gene028536:CDS |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | 4.1:+20562872 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | 4.1:-20562871 | MS.gene028536:intron |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4.1:-20561885 | MS.gene028536:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAATATATAATAATT+TGG | + | chr4.1:20563203-20563222 | None:intergenic | 10.0% |
| !!! | AAATTATTATATATTTTCCT+TGG | - | chr4.1:20563202-20563221 | MS.gene028536:intron | 10.0% |
| !! | AAAAAATTGACTAAAATGAA+AGG | + | chr4.1:20564004-20564023 | None:intergenic | 15.0% |
| !! | GAAAATATATAATAATTTGG+AGG | + | chr4.1:20563200-20563219 | None:intergenic | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | - | chr4.1:20563764-20563783 | MS.gene028536:intron | 15.0% |
| !! | TGTAAATTTGTAGAAAATAA+TGG | + | chr4.1:20563743-20563762 | None:intergenic | 15.0% |
| !!! | AATTTAAAATCATCTTACAA+AGG | + | chr4.1:20561969-20561988 | None:intergenic | 15.0% |
| !!! | AATTTTGAATGGTAATTTAA+TGG | + | chr4.1:20561645-20561664 | None:intergenic | 15.0% |
| !!! | ATTTAAAATCATCTTACAAA+GGG | + | chr4.1:20561968-20561987 | None:intergenic | 15.0% |
| !!! | CTTATATTGTTTTGTTAATA+AGG | - | chr4.1:20562938-20562957 | MS.gene028536:CDS | 15.0% |
| !!! | TATTATACAAGAATTTTGAA+TGG | + | chr4.1:20561656-20561675 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAATTTTTTTTGT+TGG | - | chr4.1:20564008-20564027 | MS.gene028536:CDS | 15.0% |
| !! | AAAAATAAAAAATAACAGGG+AGG | - | chr4.1:20563021-20563040 | MS.gene028536:intron | 20.0% |
| !! | CTTAAGTATAAAATAGTACA+AGG | + | chr4.1:20562144-20562163 | None:intergenic | 20.0% |
| !!! | ACAAAAATGGTTTTTGTATA+GGG | - | chr4.1:20562293-20562312 | MS.gene028536:intron | 20.0% |
| !!! | AGTTTTAAAAAGCACAAAAA+TGG | - | chr4.1:20562280-20562299 | MS.gene028536:intron | 20.0% |
| !!! | GCAATTTTTTCATACAAAAA+CGG | + | chr4.1:20561732-20561751 | None:intergenic | 20.0% |
| !!! | TTTGTGCTTTTTAAAACTTT+TGG | + | chr4.1:20562278-20562297 | None:intergenic | 20.0% |
| ! | AAAATTATGCTGACATCAAT+TGG | - | chr4.1:20561765-20561784 | MS.gene028536:intron | 25.0% |
| ! | AAATTATGCTGACATCAATT+GGG | - | chr4.1:20561766-20561785 | MS.gene028536:intron | 25.0% |
| ! | ACTATATCCGAAACAAAAAT+TGG | - | chr4.1:20563560-20563579 | MS.gene028536:intron | 25.0% |
| ! | AGAAAATAATGGCAAACATT+GGG | + | chr4.1:20563732-20563751 | None:intergenic | 25.0% |
| ! | ATCATCAAAAACTTATGTTG+TGG | - | chr4.1:20562651-20562670 | MS.gene028536:CDS | 25.0% |
| ! | ATGAAAAAATTGCAGTGATA+TGG | - | chr4.1:20561739-20561758 | MS.gene028536:intron | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | - | chr4.1:20562696-20562715 | MS.gene028536:CDS | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | + | chr4.1:20562696-20562715 | None:intergenic | 25.0% |
| ! | GTTTCACATTAATCTTGTTA+AGG | - | chr4.1:20563595-20563614 | MS.gene028536:intron | 25.0% |
| ! | GTTTCGGATATAGTAAAATA+TGG | + | chr4.1:20563554-20563573 | None:intergenic | 25.0% |
| ! | TAGAAAATAATGGCAAACAT+TGG | + | chr4.1:20563733-20563752 | None:intergenic | 25.0% |
| ! | TGAAAAAATTGCAGTGATAT+GGG | - | chr4.1:20561740-20561759 | MS.gene028536:intron | 25.0% |
| ! | TTATATTGCAGTCACAATTA+CGG | - | chr4.1:20562093-20562112 | MS.gene028536:CDS | 25.0% |
| ! | TTGTGTTTAGCATTATCATT+AGG | + | chr4.1:20564048-20564067 | None:intergenic | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | - | chr4.1:20563808-20563827 | MS.gene028536:intron | 25.0% |
| !! | CACAAAAATGGTTTTTGTAT+AGG | - | chr4.1:20562292-20562311 | MS.gene028536:intron | 25.0% |
| !! | TAATGATAATGCTAAACACA+AGG | - | chr4.1:20564047-20564066 | MS.gene028536:intron | 25.0% |
| !!! | CATTAGACCAATTTTTGTTT+CGG | + | chr4.1:20563570-20563589 | None:intergenic | 25.0% |
| AAATTTCATCGATCAATAGC+TGG | - | chr4.1:20563069-20563088 | MS.gene028536:intron | 30.0% | |
| AAGACTAAACTTAAAAGTGG+AGG | - | chr4.1:20563044-20563063 | MS.gene028536:intron | 30.0% | |
| AAGCTAGTTGTCAATGATAT+AGG | - | chr4.1:20562191-20562210 | MS.gene028536:intron | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | + | chr4.1:20562480-20562499 | None:intergenic | 30.0% | |
| AGCTAGTTGTCAATGATATA+GGG | - | chr4.1:20562192-20562211 | MS.gene028536:intron | 30.0% | |
| AGGAAGACTAAACTTAAAAG+TGG | - | chr4.1:20563041-20563060 | MS.gene028536:intron | 30.0% | |
| CTCTTCATTATGCATATTTC+TGG | - | chr4.1:20563334-20563353 | MS.gene028536:CDS | 30.0% | |
| CTGTAACATATAAGGAAACA+AGG | - | chr4.1:20563921-20563940 | MS.gene028536:CDS | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | + | chr4.1:20562868-20562887 | None:intergenic | 30.0% | |
| TACCTTATAACCCAAATCAA+TGG | + | chr4.1:20563696-20563715 | None:intergenic | 30.0% | |
| TATAAGTAAATCCACATCCA+TGG | + | chr4.1:20562924-20562943 | None:intergenic | 30.0% | |
| TGAGCTTTCAAAATTGAAAC+AGG | - | chr4.1:20562762-20562781 | MS.gene028536:intron | 30.0% | |
| TGTTGCATCTGTAACATATA+AGG | - | chr4.1:20563913-20563932 | MS.gene028536:CDS | 30.0% | |
| TTATATACATCACCGTTTGA+TGG | - | chr4.1:20563167-20563186 | MS.gene028536:intron | 30.0% | |
| TTGAGAAGAAATCACATCAA+AGG | - | chr4.1:20563251-20563270 | MS.gene028536:intron | 30.0% | |
| TTTGTATAGGGAATCTTTGA+GGG | - | chr4.1:20562305-20562324 | MS.gene028536:intron | 30.0% | |
| ! | AAAGGAGAAAAGTTTTCACA+AGG | - | chr4.1:20561845-20561864 | MS.gene028536:CDS | 30.0% |
| ! | ACTGATGCATATTGTTACTT+AGG | - | chr4.1:20563274-20563293 | MS.gene028536:intron | 30.0% |
| ! | TTTTGTATAGGGAATCTTTG+AGG | - | chr4.1:20562304-20562323 | MS.gene028536:intron | 30.0% |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | - | chr4.1:20563400-20563419 | MS.gene028536:CDS | 30.0% |
| !! | GTGCAATATATTTGTTGTGA+AGG | - | chr4.1:20563460-20563479 | MS.gene028536:intron | 30.0% |
| AAAGCATATAGAACCGAAGA+TGG | - | chr4.1:20562332-20562351 | MS.gene028536:CDS | 35.0% | |
| AAATAATGGCAAACATTGGG+AGG | + | chr4.1:20563729-20563748 | None:intergenic | 35.0% | |
| AACTGGAAACAATATTGAGG+AGG | - | chr4.1:20563430-20563449 | MS.gene028536:CDS | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | - | chr4.1:20562333-20562352 | MS.gene028536:CDS | 35.0% | |
| AATAATGGCAAACATTGGGA+GGG | + | chr4.1:20563728-20563747 | None:intergenic | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | + | chr4.1:20561873-20561892 | None:intergenic | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | + | chr4.1:20563638-20563657 | None:intergenic | 35.0% | |
| AGACAGATGTAGCTTCAATT+AGG | - | chr4.1:20562605-20562624 | MS.gene028536:intron | 35.0% | |
| AGCAACTGGAAACAATATTG+AGG | - | chr4.1:20563427-20563446 | MS.gene028536:CDS | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | - | chr4.1:20562469-20562488 | MS.gene028536:intron | 35.0% | |
| ATATGTTACAGATGCAACAG+AGG | + | chr4.1:20563912-20563931 | None:intergenic | 35.0% | |
| ATCATTATTGCCATGCTTAC+CGG | + | chr4.1:20563138-20563157 | None:intergenic | 35.0% | |
| ATGACATGCATGTAATCTGT+TGG | + | chr4.1:20561815-20561834 | None:intergenic | 35.0% | |
| CAAGACATCAGAAAATCCAT+TGG | + | chr4.1:20563396-20563415 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | - | chr4.1:20561827-20561846 | MS.gene028536:intron | 35.0% | |
| CATTGCGATCTTTCATATTG+TGG | - | chr4.1:20562574-20562593 | MS.gene028536:intron | 35.0% | |
| GACAGATGTAGCTTCAATTA+GGG | - | chr4.1:20562606-20562625 | MS.gene028536:intron | 35.0% | |
| GATTGATGCAGTCAAATTTG+CGG | - | chr4.1:20562038-20562057 | MS.gene028536:intron | 35.0% | |
| GGAAAATGATATCTTCACTC+CGG | - | chr4.1:20563616-20563635 | MS.gene028536:intron | 35.0% | |
| GGAGGAAAAAAACCATCAAA+CGG | + | chr4.1:20563182-20563201 | None:intergenic | 35.0% | |
| GTATTGAGGACAAAAAGTCA+TGG | - | chr4.1:20564162-20564181 | MS.gene028536:CDS | 35.0% | |
| TATTTCCTCTTATCTCTCTG+TGG | - | chr4.1:20562496-20562515 | MS.gene028536:intron | 35.0% | |
| TCAGTGTCCCTTAAAATAGA+AGG | + | chr4.1:20561597-20561616 | None:intergenic | 35.0% | |
| TGAAAAACTACGAGGAATAC+TGG | - | chr4.1:20564121-20564140 | MS.gene028536:intron | 35.0% | |
| TGCAGAGCTGAATATAAAAC+AGG | - | chr4.1:20564083-20564102 | MS.gene028536:intron | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | - | chr4.1:20561910-20561929 | MS.gene028536:CDS | 35.0% | |
| TTAAATTGCACTCGTGTATG+TGG | - | chr4.1:20561982-20562001 | MS.gene028536:intron | 35.0% | |
| TTATGTTGTGGCCATAATAG+TGG | - | chr4.1:20562663-20562682 | MS.gene028536:CDS | 35.0% | |
| ! | ATACTGGTTGGAATACAAAC+AGG | - | chr4.1:20564137-20564156 | MS.gene028536:intron | 35.0% |
| ! | TACTGGTTGGAATACAAACA+GGG | - | chr4.1:20564138-20564157 | MS.gene028536:intron | 35.0% |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | - | chr4.1:20563226-20563245 | MS.gene028536:intron | 35.0% |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | - | chr4.1:20563225-20563244 | MS.gene028536:intron | 35.0% |
| !! | ATAGACATCGCCATTGATTT+GGG | - | chr4.1:20563683-20563702 | MS.gene028536:intron | 35.0% |
| !! | ATTTTAAGGGACACTGAAGA+TGG | - | chr4.1:20561600-20561619 | MS.gene028536:CDS | 35.0% |
| !!! | CGCTGCGAAATTTTTTTTGT+TGG | - | chr4.1:20562008-20562027 | MS.gene028536:intron | 35.0% |
| !!! | GAATTTTGAAGTCTCTGTCA+CGG | + | chr4.1:20562072-20562091 | None:intergenic | 35.0% |
| AAACTACGAGGAATACTGGT+TGG | - | chr4.1:20564125-20564144 | MS.gene028536:intron | 40.0% | |
| AAAGACCACAGAGAGATAAG+AGG | + | chr4.1:20562504-20562523 | None:intergenic | 40.0% | |
| AATACAAACAGGGCGTATTG+AGG | - | chr4.1:20564148-20564167 | MS.gene028536:intron | 40.0% | |
| AATGCTCTACGCATGAAGAT+GGG | - | chr4.1:20562383-20562402 | MS.gene028536:CDS | 40.0% | |
| ACACTGAAGATGGTTCTCAA+AGG | - | chr4.1:20561610-20561629 | MS.gene028536:CDS | 40.0% | |
| ACGTTGTCTGAAAAACTACG+AGG | - | chr4.1:20564113-20564132 | MS.gene028536:intron | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | + | chr4.1:20562862-20562881 | None:intergenic | 40.0% | |
| ATAGATGGATCTATTCTGCC+TGG | - | chr4.1:20563641-20563660 | MS.gene028536:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | + | chr4.1:20563681-20563700 | None:intergenic | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | + | chr4.1:20561874-20561893 | None:intergenic | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | - | chr4.1:20562468-20562487 | MS.gene028536:intron | 40.0% | |
| CATAGAACGTTCCATATCAG+TGG | - | chr4.1:20563832-20563851 | MS.gene028536:intron | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | - | chr4.1:20561905-20561924 | MS.gene028536:CDS | 40.0% | |
| GTAACTGAAGCAAAAGCCAA+TGG | - | chr4.1:20563377-20563396 | MS.gene028536:CDS | 40.0% | |
| GTGTCCCTTAAAATAGAAGG+AGG | + | chr4.1:20561594-20561613 | None:intergenic | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | - | chr4.1:20563642-20563661 | MS.gene028536:intron | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | + | chr4.1:20561905-20561924 | None:intergenic | 40.0% | |
| TATCTTAGGCCTTTGCTGAT+AGG | - | chr4.1:20562811-20562830 | MS.gene028536:intron | 40.0% | |
| TATGCTGACATCAATTGGGA+AGG | - | chr4.1:20561770-20561789 | MS.gene028536:intron | 40.0% | |
| TCATTATTGCCATGCTTACC+GGG | + | chr4.1:20563137-20563156 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | - | chr4.1:20561883-20561902 | MS.gene028536:CDS | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | - | chr4.1:20563413-20563432 | MS.gene028536:CDS | 40.0% | |
| ! | CATAGACATCGCCATTGATT+TGG | - | chr4.1:20563682-20563701 | MS.gene028536:intron | 40.0% |
| ! | CTTTTCACAAGTCACAACCA+AGG | + | chr4.1:20563222-20563241 | None:intergenic | 40.0% |
| ! | GAGTGTTACTAATTATGCCC+CGG | - | chr4.1:20563116-20563135 | MS.gene028536:intron | 40.0% |
| ! | TGGCTCCTCCTTCTATTTTA+AGG | - | chr4.1:20561586-20561605 | MS.gene028536:CDS | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | - | chr4.1:20563691-20563710 | MS.gene028536:intron | 40.0% |
| !! | GGCTCCTCCTTCTATTTTAA+GGG | - | chr4.1:20561587-20561606 | MS.gene028536:CDS | 40.0% |
| !! | TCATGCATGGTTTTACGTTG+CGG | - | chr4.1:20562538-20562557 | MS.gene028536:intron | 40.0% |
| AAGAAGGATTCGCCCATCTT+CGG | + | chr4.1:20562348-20562367 | None:intergenic | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | - | chr4.1:20563835-20563854 | MS.gene028536:intron | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | - | chr4.1:20563643-20563662 | MS.gene028536:intron | 45.0% | |
| AGTTTATGATACCAGCAGCC+GGG | + | chr4.1:20561904-20561923 | None:intergenic | 45.0% | |
| ATAGGAACAGGAGCTGCATT+AGG | - | chr4.1:20562829-20562848 | MS.gene028536:intron | 45.0% | |
| ATCTTCACTCCGGCAATAGA+TGG | - | chr4.1:20563626-20563645 | MS.gene028536:intron | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | - | chr4.1:20562384-20562403 | MS.gene028536:CDS | 45.0% | |
| CAGTCTATCAGCTTCATGCA+TGG | - | chr4.1:20562525-20562544 | MS.gene028536:intron | 45.0% | |
| CATCGTTTCCTCCACTGATA+TGG | + | chr4.1:20563846-20563865 | None:intergenic | 45.0% | |
| CATTATTGCCATGCTTACCG+GGG | + | chr4.1:20563136-20563155 | None:intergenic | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | - | chr4.1:20562880-20562899 | MS.gene028536:CDS | 45.0% | |
| GAATGCTCTACGCATGAAGA+TGG | - | chr4.1:20562382-20562401 | MS.gene028536:CDS | 45.0% | |
| GCGGTTCAGAACCACTATTA+TGG | + | chr4.1:20562677-20562696 | None:intergenic | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | - | chr4.1:20562797-20562816 | MS.gene028536:intron | 45.0% | |
| TAATTATGCCCCGGTAAGCA+TGG | - | chr4.1:20563125-20563144 | MS.gene028536:intron | 45.0% | |
| TCAACAAACTGCTCAACCGA+TGG | + | chr4.1:20562434-20562453 | None:intergenic | 45.0% | |
| ! | AATCCTTCTTTTCCGACCAG+AGG | - | chr4.1:20562358-20562377 | MS.gene028536:CDS | 45.0% |
| !! | AAAAAAAAATAAAAAATAAC+AGG | - | chr4.1:20563017-20563036 | MS.gene028536:intron | 5.0% |
| !! | AAAAAAAATAAAAAATAACA+GGG | - | chr4.1:20563018-20563037 | MS.gene028536:intron | 5.0% |
| !!! | ATTTTTTTTTAAAAAAAAGA+AGG | + | chr4.1:20563007-20563026 | None:intergenic | 5.0% |
| AACAGGAGCTGCATTAGGCT+TGG | - | chr4.1:20562834-20562853 | MS.gene028536:intron | 50.0% | |
| AACTGCTCAACCGATGGTGA+CGG | + | chr4.1:20562428-20562447 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | + | chr4.1:20562898-20562917 | None:intergenic | 50.0% | |
| AGGCCTTTGCTGATAGGAAC+AGG | - | chr4.1:20562817-20562836 | MS.gene028536:intron | 50.0% | |
| CAAGGATCCCTCATTCGCTA+TGG | - | chr4.1:20561863-20561882 | MS.gene028536:CDS | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | - | chr4.1:20563075-20563094 | MS.gene028536:intron | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | + | chr4.1:20562897-20562916 | None:intergenic | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | + | chr4.1:20562896-20562915 | None:intergenic | 50.0% | |
| GCTCCTGTTCCTATCAGCAA+AGG | + | chr4.1:20562823-20562842 | None:intergenic | 50.0% | |
| GTTGTGTATGCCGTCACCAT+CGG | - | chr4.1:20562415-20562434 | MS.gene028536:intron | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | + | chr4.1:20562364-20562383 | None:intergenic | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | - | chr4.1:20562776-20562795 | MS.gene028536:intron | 50.0% | |
| TGCTCTACGCATGAAGATGG+GGG | - | chr4.1:20562385-20562404 | MS.gene028536:CDS | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | - | chr4.1:20562775-20562794 | MS.gene028536:intron | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | + | chr4.1:20562796-20562815 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | + | chr4.1:20562377-20562396 | None:intergenic | 50.0% |
| ! | ATGGATTTTCGTGTGACCCC+AGG | + | chr4.1:20563662-20563681 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | - | chr4.1:20563869-20563888 | MS.gene028536:CDS | 50.0% |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | + | chr4.1:20562373-20562392 | None:intergenic | 50.0% |
| AAGTACCACGAGGTCAGCCA+TGG | - | chr4.1:20562904-20562923 | MS.gene028536:CDS | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | - | chr4.1:20562782-20562801 | MS.gene028536:intron | 55.0% | |
| ATTGAGATAAGCCCGGCTGC+TGG | - | chr4.1:20561890-20561909 | MS.gene028536:CDS | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | - | chr4.1:20563078-20563097 | MS.gene028536:intron | 55.0% | |
| GCATGAAGATGGGGGCTGAT+AGG | - | chr4.1:20562393-20562412 | MS.gene028536:CDS | 55.0% | |
| GTTCTGCACAGGAACTGCAG+TGG | - | chr4.1:20563880-20563899 | MS.gene028536:CDS | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | - | chr4.1:20563084-20563103 | MS.gene028536:intron | 55.0% |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | + | chr4.1:20562793-20562812 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | - | chr4.1:20562894-20562913 | MS.gene028536:CDS | 55.0% |
| CACATCCATGGCTGACCTCG+TGG | + | chr4.1:20562912-20562931 | None:intergenic | 60.0% | |
| CACGAGGTCAGCCATGGATG+TGG | - | chr4.1:20562910-20562929 | MS.gene028536:CDS | 60.0% | |
| CAGGTACCTCCTCCAGGGAA+AGG | - | chr4.1:20562781-20562800 | MS.gene028536:intron | 60.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | + | chr4.1:20562790-20562809 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | - | chr4.1:20563087-20563106 | MS.gene028536:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 20561585 | 20564202 | 20561585 | ID=MS.gene028536 |
| chr4.1 | mRNA | 20561585 | 20564202 | 20561585 | ID=MS.gene028536.t1;Parent=MS.gene028536 |
| chr4.1 | exon | 20564156 | 20564202 | 20564156 | ID=MS.gene028536.t1.exon1;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20564156 | 20564202 | 20564156 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20563856 | 20564033 | 20563856 | ID=MS.gene028536.t1.exon2;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20563856 | 20564033 | 20563856 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20563297 | 20563473 | 20563297 | ID=MS.gene028536.t1.exon3;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20563297 | 20563473 | 20563297 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20562872 | 20563003 | 20562872 | ID=MS.gene028536.t1.exon4;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20562872 | 20563003 | 20562872 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20562650 | 20562748 | 20562650 | ID=MS.gene028536.t1.exon5;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20562650 | 20562748 | 20562650 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20562306 | 20562422 | 20562306 | ID=MS.gene028536.t1.exon6;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20562306 | 20562422 | 20562306 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20562075 | 20562170 | 20562075 | ID=MS.gene028536.t1.exon7;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20562075 | 20562170 | 20562075 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20561845 | 20561957 | 20561845 | ID=MS.gene028536.t1.exon8;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20561845 | 20561957 | 20561845 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| chr4.1 | exon | 20561585 | 20561699 | 20561585 | ID=MS.gene028536.t1.exon9;Parent=MS.gene028536.t1 |
| chr4.1 | CDS | 20561585 | 20561699 | 20561585 | ID=cds.MS.gene028536.t1;Parent=MS.gene028536.t1 |
| Gene Sequence |
| Protein sequence |
