AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028845.t1 MTR_2g090950 92.917 240 16 1 1 240 1 239 8.62e-144 402
MS.gene028845.t1 MTR_2g090905 74.797 123 31 0 55 177 2 124 6.88e-66 200
MS.gene028845.t1 MTR_2g436100 39.779 181 92 4 30 204 28 197 9.54e-33 120
MS.gene028845.t1 MTR_3g099650 35.664 143 80 4 31 173 55 185 1.91e-26 105
MS.gene028845.t1 MTR_4g120270 41.379 145 75 2 31 173 17 153 1.94e-26 103
MS.gene028845.t1 MTR_3g110190 42.748 131 63 4 46 170 14 138 3.09e-25 102
MS.gene028845.t1 MTR_8g023400 38.194 144 72 4 34 169 28 162 1.30e-24 99.8
MS.gene028845.t1 MTR_5g071930 39.716 141 72 3 32 169 4 134 3.84e-24 95.9
MS.gene028845.t1 MTR_5g064980 33.333 144 86 4 42 179 53 192 4.16e-24 99.4
MS.gene028845.t1 MTR_6g087150 39.706 136 68 4 36 169 41 164 4.67e-24 99.0
MS.gene028845.t1 MTR_7g113800 33.793 145 85 4 30 173 35 169 8.67e-24 98.2
MS.gene028845.t1 MTR_7g117540 34.559 136 77 2 34 169 23 146 3.57e-23 95.5
MS.gene028845.t1 MTR_5g064990 34.028 144 90 3 28 171 52 190 4.87e-23 96.3
MS.gene028845.t1 MTR_4g129420 37.903 124 71 2 46 169 72 189 3.99e-22 94.7
MS.gene028845.t1 MTR_3g100400 47.561 82 37 1 90 171 128 203 7.53e-22 93.6
MS.gene028845.t1 MTR_5g066250 46.341 82 38 1 90 171 132 207 1.14e-21 93.2
MS.gene028845.t1 MTR_1g082550 32.414 145 90 3 29 173 40 176 1.35e-21 92.4
MS.gene028845.t1 MTR_3g464780 36.306 157 79 2 32 169 23 177 1.59e-21 90.5
MS.gene028845.t1 MTR_3g071300 33.784 148 86 5 37 181 28 166 4.47e-21 87.0
MS.gene028845.t1 MTR_8g063660 31.757 148 76 3 35 169 4 139 8.71e-21 89.7
MS.gene028845.t1 MTR_5g034790 32.258 155 88 3 26 169 39 187 9.57e-21 89.7
MS.gene028845.t1 MTR_3g091620 42.353 85 43 1 83 167 92 170 4.85e-20 87.8
MS.gene028845.t1 MTR_7g116220 32.624 141 85 3 31 167 8 142 7.84e-20 84.0
MS.gene028845.t1 MTR_2g096350 45.455 88 42 3 84 169 97 180 8.14e-20 84.7
MS.gene028845.t1 MTR_6g007737 34.507 142 79 3 36 170 71 205 1.78e-19 86.7
MS.gene028845.t1 MTR_4g063070 46.250 80 39 1 90 169 306 381 2.46e-19 86.3
MS.gene028845.t1 MTR_1g074190 38.636 88 52 1 82 169 91 176 9.28e-19 84.3
MS.gene028845.t1 MTR_5g076990 32.414 145 92 3 39 180 21 162 1.58e-18 83.2
MS.gene028845.t1 MTR_8g066780 32.593 135 85 3 36 169 58 187 1.68e-18 83.6
MS.gene028845.t1 MTR_7g116180 43.038 79 36 2 92 167 67 139 5.33e-18 79.0
MS.gene028845.t1 MTR_8g066740 28.902 173 115 4 39 206 21 190 5.87e-18 81.3
MS.gene028845.t1 MTR_1g070425 43.038 79 36 2 92 167 68 140 1.46e-17 77.8
MS.gene028845.t1 MTR_7g096690 28.667 150 94 4 27 169 2 145 1.77e-17 80.5
MS.gene028845.t1 MTR_7g108855 37.168 113 60 3 59 171 40 141 1.85e-17 78.2
MS.gene028845.t1 MTR_5g030010 30.986 142 84 4 36 169 58 193 2.07e-17 80.5
MS.gene028845.t1 MTR_4g106680 29.054 148 79 3 35 169 43 177 2.27e-17 79.7
MS.gene028845.t1 MTR_3g078120 32.877 146 90 4 36 180 1 139 2.55e-17 76.6
MS.gene028845.t1 MTR_1g070140 36.250 80 46 1 90 169 101 175 5.15e-17 79.3
MS.gene028845.t1 MTR_2g041200 36.296 135 71 4 42 171 32 156 6.75e-17 76.3
MS.gene028845.t1 MTR_1g043410 34.375 96 60 1 92 187 94 186 1.10e-16 78.2
MS.gene028845.t1 MTR_7g076250 26.667 135 85 4 36 166 8 132 2.03e-16 75.1
MS.gene028845.t1 MTR_5g024730 32.824 131 72 2 36 166 33 147 2.85e-16 75.1
MS.gene028845.t1 MTR_5g026730 40.000 90 51 1 87 173 54 143 3.21e-16 74.3
MS.gene028845.t1 MTR_6g055030 29.371 143 87 2 27 169 43 171 4.02e-16 76.3
MS.gene028845.t1 MTR_3g094000 30.612 147 88 4 27 173 36 168 4.11e-16 73.9
MS.gene028845.t1 MTR_8g009190 30.201 149 97 4 23 171 11 152 4.62e-16 76.3
MS.gene028845.t1 MTR_1g100737 36.585 82 51 1 89 170 89 169 5.70e-16 73.9
MS.gene028845.t1 MTR_2g044570 47.826 69 33 1 101 169 63 128 7.56e-16 75.5
MS.gene028845.t1 MTR_8g019710 42.647 68 35 1 103 170 37 100 9.69e-16 72.0
MS.gene028845.t1 MTR_3g078450 31.304 115 66 3 59 167 40 147 1.09e-15 73.9
MS.gene028845.t1 MTR_1g492830 28.671 143 86 4 36 174 8 138 1.09e-15 73.9
MS.gene028845.t1 MTR_7g079280 32.653 98 62 1 87 184 75 168 1.13e-15 72.8
MS.gene028845.t1 MTR_5g082940 32.500 120 66 3 52 170 44 149 1.24e-15 72.4
MS.gene028845.t1 MTR_8g073120 32.576 132 73 3 36 167 26 141 1.89e-15 72.8
MS.gene028845.t1 MTR_4g093830 29.825 171 87 5 40 189 59 217 1.98e-15 74.7
MS.gene028845.t1 MTR_8g089880 36.709 79 44 1 91 169 126 198 2.76e-15 73.6
MS.gene028845.t1 MTR_1g056350 33.333 99 59 2 83 177 61 156 3.40e-15 71.2
MS.gene028845.t1 MTR_3g114500 54.000 50 23 0 123 172 70 119 3.62e-15 70.1
MS.gene028845.t1 MTR_8g071815 45.588 68 37 0 106 173 72 139 3.71e-15 71.6
MS.gene028845.t1 MTR_3g086700 34.314 102 60 2 97 198 51 145 3.79e-15 71.6
MS.gene028845.t1 MTR_5g026720 40.000 80 47 1 96 175 66 144 4.20e-15 70.9
MS.gene028845.t1 MTR_8g092960 27.473 182 118 4 9 189 28 196 4.67e-15 72.0
MS.gene028845.t1 MTR_8g092840 28.313 166 113 2 25 189 46 206 6.17e-15 72.0
MS.gene028845.t1 MTR_4g030070 32.479 117 68 3 59 171 48 157 6.29e-15 72.0
MS.gene028845.t1 MTR_3g086730 34.545 110 63 3 97 206 51 151 1.17e-14 71.2
MS.gene028845.t1 MTR_3g078470 27.481 131 82 3 43 167 24 147 1.33e-14 70.9
MS.gene028845.t1 MTR_5g092790 31.746 126 66 2 60 169 109 230 1.42e-14 70.9
MS.gene028845.t1 MTR_2g009310 52.830 53 25 0 123 175 160 212 1.90e-14 72.0
MS.gene028845.t1 MTR_7g073200 30.714 140 81 5 30 169 29 152 2.57e-14 69.3
MS.gene028845.t1 MTR_3g012550 29.054 148 97 3 37 181 23 165 2.97e-14 68.9
MS.gene028845.t1 MTR_5g064890 37.037 81 45 2 89 169 125 199 3.06e-14 71.2
MS.gene028845.t1 MTR_1g026070 39.024 82 41 2 90 171 46 118 3.09e-14 67.8
MS.gene028845.t1 MTR_7g059360 61.224 49 19 0 123 171 157 205 4.37e-14 69.7
MS.gene028845.t1 MTR_3g095560 33.600 125 73 3 47 166 59 178 5.73e-14 69.3
MS.gene028845.t1 MTR_4g094725 33.058 121 76 2 47 166 32 148 6.86e-14 67.4
MS.gene028845.t1 MTR_8g028465 23.270 159 100 2 41 185 25 175 7.33e-14 68.6
MS.gene028845.t1 MTR_2g055790 51.852 54 26 0 118 171 94 147 8.31e-14 68.2
MS.gene028845.t1 MTR_5g092750 56.522 46 20 0 124 169 185 230 8.70e-14 68.9
MS.gene028845.t1 MTR_8g092930 29.577 142 94 2 25 166 46 181 1.02e-13 68.6
MS.gene028845.t1 MTR_4g108830 27.517 149 93 4 27 169 52 191 1.12e-13 67.8
MS.gene028845.t1 MTR_3g116000 33.588 131 74 3 36 166 29 146 2.31e-13 67.0
MS.gene028845.t1 MTR_2g035800 30.714 140 79 4 31 170 27 148 2.97e-13 65.9
MS.gene028845.t1 MTR_8g092985 38.750 80 44 1 87 166 106 180 5.93e-13 66.2
MS.gene028845.t1 MTR_4g022410 46.667 60 32 0 110 169 99 158 8.13e-13 65.5
MS.gene028845.t1 MTR_7g117350 24.204 157 107 2 19 175 221 365 8.52e-13 67.4
MS.gene028845.t1 MTR_4g056590 35.897 78 41 1 92 169 100 168 1.07e-12 65.1
MS.gene028845.t1 MTR_8g032690 39.474 76 40 2 124 194 19 93 1.08e-12 63.2
MS.gene028845.t1 MTR_1g090450 35.115 131 79 3 37 166 24 149 1.20e-12 64.3
MS.gene028845.t1 MTR_7g116200 28.788 132 85 3 36 167 14 136 1.24e-12 64.3
MS.gene028845.t1 MTR_5g022920 27.879 165 96 4 21 166 71 231 1.71e-12 65.1
MS.gene028845.t1 MTR_7g117350 23.239 142 101 1 34 175 240 373 1.73e-12 66.6
MS.gene028845.t1 MTR_1g090480 27.737 137 91 4 41 177 25 153 1.73e-12 63.9
MS.gene028845.t1 MTR_8g093010 27.329 161 103 3 7 166 29 176 2.54e-12 64.7
MS.gene028845.t1 MTR_8g092990 56.818 44 19 0 123 166 140 183 2.66e-12 64.7
MS.gene028845.t1 MTR_8g092970 56.818 44 19 0 123 166 130 173 3.04e-12 64.3
MS.gene028845.t1 MTR_5g026260 43.421 76 32 4 97 169 483 550 3.18e-12 65.9
MS.gene028845.t1 MTR_6g007680 27.941 136 69 3 35 169 4 111 5.09e-12 62.4
MS.gene028845.t1 MTR_4g116460 34.211 76 48 2 95 169 412 486 5.37e-12 65.1
MS.gene028845.t1 MTR_4g116460 34.211 76 48 2 95 169 455 529 5.83e-12 65.1
MS.gene028845.t1 MTR_4g108830 35.802 81 45 1 89 169 146 219 5.84e-12 63.5
MS.gene028845.t1 MTR_7g116210 34.568 81 46 1 87 167 5 78 1.22e-11 60.5
MS.gene028845.t1 MTR_8g074900 53.061 49 23 0 118 166 174 222 1.35e-11 62.4
MS.gene028845.t1 MTR_8g099515 36.264 91 50 2 92 182 309 391 1.61e-11 63.5
MS.gene028845.t1 MTR_7g079290 34.831 89 52 3 92 176 125 211 1.72e-11 62.0
MS.gene028845.t1 MTR_3g081030 40.845 71 35 1 101 171 103 166 1.83e-11 62.0
MS.gene028845.t1 MTR_4g064550 42.623 61 34 1 109 169 200 259 2.47e-11 62.4
MS.gene028845.t1 MTR_6g055030 43.662 71 38 1 126 196 97 165 2.72e-11 62.4
MS.gene028845.t1 MTR_8g027980 39.189 74 38 2 98 169 96 164 2.77e-11 62.4
MS.gene028845.t1 MTR_6g007670 52.083 48 23 0 122 169 31 78 3.53e-11 61.6
MS.gene028845.t1 MTR_4g064560 42.623 61 34 1 109 169 194 253 8.51e-11 60.8
MS.gene028845.t1 MTR_8g099495 29.508 122 73 3 45 166 281 389 9.13e-11 61.6
MS.gene028845.t1 MTR_7g078150 44.643 56 30 1 122 176 88 143 9.28e-11 59.3
MS.gene028845.t1 MTR_8g027745 46.000 50 27 0 124 173 314 363 9.41e-11 61.2
MS.gene028845.t1 MTR_8g098770 48.980 49 24 1 124 171 86 134 9.59e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028845.t1 AT2G42360 42.972 249 110 9 5 238 3 234 5.11e-53 171
MS.gene028845.t1 AT2G42350 40.574 244 106 9 1 238 1 211 6.97e-46 152
MS.gene028845.t1 AT3G16720 40.113 177 90 3 9 176 2 171 8.55e-34 124
MS.gene028845.t1 AT3G62690 38.650 163 89 4 19 177 12 167 5.59e-29 110
MS.gene028845.t1 AT2G47560 36.601 153 88 2 19 171 12 155 1.02e-26 103
MS.gene028845.t1 AT4G15975 42.623 122 53 4 52 171 17 123 1.61e-25 100
MS.gene028845.t1 AT1G23980 36.170 141 75 2 35 166 52 186 4.04e-24 99.4
MS.gene028845.t1 AT2G20030 37.063 143 58 4 91 214 97 226 1.62e-23 97.8
MS.gene028845.t1 AT1G35330 41.053 95 53 1 79 173 87 178 5.17e-23 95.5
MS.gene028845.t1 AT5G05810 36.478 159 86 5 90 239 118 270 5.51e-23 96.7
MS.gene028845.t1 AT1G72310 34.615 182 85 5 11 169 2 172 8.85e-23 95.1
MS.gene028845.t1 AT1G04360 34.810 158 75 5 26 169 36 179 3.07e-22 94.4
MS.gene028845.t1 AT1G72200 32.593 135 85 2 42 173 62 193 1.43e-21 92.8
MS.gene028845.t1 AT5G43420 32.934 167 92 4 40 187 36 201 2.37e-21 91.7
MS.gene028845.t1 AT4G09120 43.529 85 45 1 89 173 91 172 3.54e-21 90.9
MS.gene028845.t1 AT2G34990 31.081 148 97 2 36 183 13 155 3.93e-21 90.1
MS.gene028845.t1 AT4G28890 48.101 79 35 1 91 169 96 168 3.95e-21 91.7
MS.gene028845.t1 AT2G34990 31.081 148 97 2 36 183 35 177 5.86e-21 90.1
MS.gene028845.t1 AT2G35000 34.586 133 81 2 40 169 51 180 5.96e-21 90.5
MS.gene028845.t1 AT2G34000 34.752 141 87 2 31 171 3 138 1.82e-20 85.1
MS.gene028845.t1 AT2G35420 33.333 132 81 2 41 171 25 150 2.18e-20 87.4
MS.gene028845.t1 AT1G22500 34.532 139 78 4 38 173 39 167 2.96e-20 88.6
MS.gene028845.t1 AT1G20823 37.778 135 69 4 36 166 30 153 4.37e-20 85.1
MS.gene028845.t1 AT3G05200 33.858 127 77 3 45 169 52 173 7.65e-20 87.8
MS.gene028845.t1 AT4G09110 33.088 136 80 3 38 173 48 172 8.45e-20 86.7
MS.gene028845.t1 AT5G40250 31.792 173 106 5 36 196 45 217 9.06e-20 87.4
MS.gene028845.t1 AT5G27420 42.529 87 44 2 92 175 95 178 1.10e-19 87.0
MS.gene028845.t1 AT4G40070 44.444 81 42 2 92 172 95 172 3.22e-19 85.1
MS.gene028845.t1 AT4G09130 38.542 96 49 2 92 180 91 183 3.57e-19 85.5
MS.gene028845.t1 AT4G17905 31.056 161 97 4 19 169 44 200 3.87e-19 84.7
MS.gene028845.t1 AT4G10160 27.835 194 127 4 27 219 12 193 5.60e-19 82.8
MS.gene028845.t1 AT4G17905 31.646 158 94 4 22 169 73 226 8.97e-19 84.0
MS.gene028845.t1 AT1G53820 32.487 197 94 4 34 208 23 202 1.50e-18 83.2
MS.gene028845.t1 AT3G14320 39.423 104 51 2 81 179 52 148 2.21e-18 80.9
MS.gene028845.t1 AT2G18650 35.043 117 71 1 53 169 60 171 3.80e-18 83.2
MS.gene028845.t1 AT5G57750 31.111 135 85 2 35 166 35 164 5.23e-18 80.1
MS.gene028845.t1 AT3G48030 34.507 142 72 5 35 166 41 171 5.81e-18 80.9
MS.gene028845.t1 AT4G30400 48.052 77 35 1 90 166 105 176 7.57e-18 82.4
MS.gene028845.t1 AT4G10150 26.522 230 149 7 6 230 4 218 8.86e-18 79.7
MS.gene028845.t1 AT3G48030 34.507 142 72 5 35 166 119 249 1.07e-17 81.3
MS.gene028845.t1 AT5G46650 34.043 141 80 5 40 171 26 162 1.60e-17 80.1
MS.gene028845.t1 AT5G17600 34.074 135 75 2 43 169 59 187 1.88e-17 80.9
MS.gene028845.t1 AT4G09100 42.683 82 40 2 92 171 56 132 2.00e-17 76.3
MS.gene028845.t1 AT1G72220 28.659 164 98 4 41 191 88 245 4.90e-17 79.7
MS.gene028845.t1 AT1G76410 32.117 137 78 3 31 166 24 146 6.38e-17 76.3
MS.gene028845.t1 AT4G33565 39.048 105 44 3 92 193 191 278 8.57e-17 79.0
MS.gene028845.t1 AT3G18930 42.683 82 43 1 92 169 120 201 1.03e-16 79.0
MS.gene028845.t1 AT3G18930 42.683 82 43 1 92 169 120 201 1.03e-16 79.0
MS.gene028845.t1 AT3G18930 42.683 82 43 1 92 169 120 201 1.03e-16 79.0
MS.gene028845.t1 AT2G46160 27.389 157 98 4 41 181 39 195 3.31e-16 75.1
MS.gene028845.t1 AT2G46160 27.389 157 98 4 41 181 39 195 3.31e-16 75.1
MS.gene028845.t1 AT3G19140 39.785 93 49 1 91 183 53 138 3.59e-16 73.2
MS.gene028845.t1 AT3G10910 31.250 176 94 7 2 173 14 166 3.61e-16 74.3
MS.gene028845.t1 AT5G10380 45.833 72 39 0 122 193 133 204 7.61e-16 75.5
MS.gene028845.t1 AT5G58580 41.250 80 42 1 90 169 109 183 8.30e-16 75.5
MS.gene028845.t1 AT3G61550 33.684 95 58 1 92 181 99 193 1.35e-15 73.6
MS.gene028845.t1 AT3G60220 45.833 72 36 1 96 167 92 160 1.68e-15 75.1
MS.gene028845.t1 AT2G27940 28.814 118 76 2 92 208 115 225 2.43e-15 73.2
MS.gene028845.t1 AT1G32361 38.144 97 49 3 88 181 126 214 2.77e-15 74.3
MS.gene028845.t1 AT4G17920 31.884 138 80 4 41 170 25 156 4.90e-15 73.2
MS.gene028845.t1 AT2G17450 40.964 83 48 1 90 171 67 149 5.36e-15 71.2
MS.gene028845.t1 AT5G53110 31.452 124 79 2 48 170 258 376 6.70e-15 73.6
MS.gene028845.t1 AT5G06490 33.673 98 56 2 92 184 96 189 9.47e-15 70.9
MS.gene028845.t1 AT5G42200 29.530 149 88 4 25 171 18 151 1.03e-14 70.1
MS.gene028845.t1 AT3G03550 28.947 152 85 3 35 169 59 204 1.03e-14 72.8
MS.gene028845.t1 AT1G49230 33.577 137 77 3 30 166 51 173 2.46e-14 70.1
MS.gene028845.t1 AT4G17245 33.987 153 75 7 23 173 24 152 2.48e-14 68.9
MS.gene028845.t1 AT2G25410 30.714 140 87 4 34 171 243 374 2.56e-14 71.6
MS.gene028845.t1 AT5G01880 61.364 44 17 0 123 166 104 147 6.17e-14 67.8
MS.gene028845.t1 AT1G74410 32.558 86 52 1 85 170 143 222 8.48e-14 68.6
MS.gene028845.t1 AT2G46493 32.540 126 75 3 46 166 60 180 9.16e-14 67.8
MS.gene028845.t1 AT1G28040 30.216 139 79 5 33 166 170 295 9.55e-14 69.7
MS.gene028845.t1 AT1G49200 33.094 139 81 5 28 166 52 178 1.03e-13 68.6
MS.gene028845.t1 AT1G53010 41.975 81 46 1 87 166 92 172 1.08e-13 67.4
MS.gene028845.t1 AT1G49220 32.593 135 77 3 32 166 57 177 1.13e-13 68.9
MS.gene028845.t1 AT2G46494 27.465 142 97 2 25 166 223 358 1.19e-13 69.7
MS.gene028845.t1 AT2G37580 51.852 54 26 0 123 176 141 194 1.48e-13 68.2
MS.gene028845.t1 AT5G47610 29.932 147 79 4 23 169 30 152 2.60e-13 66.2
MS.gene028845.t1 AT2G35910 34.884 86 50 1 92 177 121 200 3.30e-13 67.0
MS.gene028845.t1 AT1G33480 33.333 111 66 3 92 201 75 178 4.38e-13 67.4
MS.gene028845.t1 AT1G49210 30.216 139 85 3 28 166 51 177 6.33e-13 66.2
MS.gene028845.t1 AT3G60966 50.000 54 27 0 124 177 62 115 9.38e-13 63.9
MS.gene028845.t1 AT5G07040 25.954 131 91 3 41 171 17 141 1.06e-12 64.3
MS.gene028845.t1 AT5G05280 56.818 44 19 0 123 166 112 155 1.24e-12 64.7
MS.gene028845.t1 AT4G35480 53.061 49 23 0 123 171 112 160 1.31e-12 65.1
MS.gene028845.t1 AT5G66070 27.848 158 101 3 21 166 62 218 1.85e-12 65.1
MS.gene028845.t1 AT5G66070 27.848 158 101 3 21 166 62 218 1.85e-12 65.1
MS.gene028845.t1 AT5G66070 50.980 51 25 0 116 166 192 242 4.50e-12 64.3
MS.gene028845.t1 AT2G18670 34.043 94 56 2 87 180 78 165 7.99e-12 62.4
MS.gene028845.t1 AT3G18773 28.966 145 98 1 22 166 33 172 8.19e-12 63.2
MS.gene028845.t1 AT1G80400 35.417 96 43 3 92 169 305 399 8.50e-12 64.7
MS.gene028845.t1 AT5G36001 40.000 70 42 0 97 166 237 306 8.56e-12 64.3
MS.gene028845.t1 AT2G17730 32.308 130 80 4 45 169 115 241 9.27e-12 63.2
MS.gene028845.t1 AT2G46495 27.857 140 86 4 34 171 241 367 1.07e-11 64.3
MS.gene028845.t1 AT1G26800 48.936 47 23 1 123 169 112 157 1.25e-11 62.4
MS.gene028845.t1 AT2G44578 41.429 70 38 1 108 177 57 123 1.84e-11 60.8
MS.gene028845.t1 AT3G11110 37.179 78 44 1 92 169 80 152 2.02e-11 60.8
MS.gene028845.t1 AT4G35840 25.455 165 101 3 21 166 72 233 2.21e-11 62.0
MS.gene028845.t1 AT2G46495 35.294 85 48 2 89 171 260 339 2.48e-11 63.2
MS.gene028845.t1 AT1G63170 53.191 47 21 1 123 169 324 369 2.68e-11 63.2
MS.gene028845.t1 AT1G63840 48.000 50 24 1 124 171 89 138 3.40e-11 60.5
MS.gene028845.t1 AT4G30370 35.897 78 44 1 92 169 89 160 3.41e-11 60.5
MS.gene028845.t1 AT1G35625 28.070 171 96 8 39 208 163 307 5.87e-11 61.6
MS.gene028845.t1 AT3G43430 49.123 57 20 1 124 171 83 139 8.30e-11 59.3

Find 54 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGTTTGGATCATTATT+TGG 0.071430 2.3:-9467237 None:intergenic
TTTAGCACTTGTATTAATTT+TGG 0.212299 2.3:+9467353 MS.gene028845:CDS
TCAACCTTGGTTCGACAAAT+TGG 0.217413 2.3:-9467714 None:intergenic
TGCGCATTCAACAATATTCT+TGG 0.261599 2.3:-9467580 None:intergenic
CATGGTTTGGATCATTATTT+GGG 0.311476 2.3:-9467236 None:intergenic
CCCTCACGTGGCTCTAGTTC+AGG 0.359777 2.3:-9467744 None:intergenic
TGGAAACTATGCTTACAATT+AGG 0.360588 2.3:-9467648 None:intergenic
TACAAGTGCTAAAGAAACTA+TGG 0.381716 2.3:-9467343 None:intergenic
CCTTCAGATGGTGGTTTAAA+CGG 0.389269 2.3:-9467774 None:intergenic
GGAAGAGCGGTGATGATTGT+AGG 0.429201 2.3:-9467510 None:intergenic
TAATCATGATCATCATGGTT+TGG 0.445166 2.3:-9467249 None:intergenic
CATGATTATTATCATCCATT+CGG 0.466054 2.3:+9467264 MS.gene028845:CDS
TGGCAGCTCTCCGACGAGCT+TGG 0.467513 2.3:-9467416 None:intergenic
GGGTCGACTCCAGTGTTGGC+TGG 0.470922 2.3:-9467489 None:intergenic
TCTTCACGATGAGTACTAGA+AGG 0.475004 2.3:-9467894 None:intergenic
CACGATGAGTACTAGAAGGT+TGG 0.489713 2.3:-9467890 None:intergenic
TTCAGGCCGCGGTTCAACCT+TGG 0.494245 2.3:-9467727 None:intergenic
ATGTGGGTTGTATTGATAAG+TGG 0.525892 2.3:+9467670 MS.gene028845:CDS
TCAAGCTCACACTCAATTCG+CGG 0.532832 2.3:+9467464 MS.gene028845:CDS
TTCGCGGAGCCAGCCAACAC+TGG 0.533034 2.3:+9467480 MS.gene028845:CDS
GAAGAGGAAAGTGGGAAGAG+CGG 0.536938 2.3:-9467523 None:intergenic
GATAATAATCATGATCATCA+TGG 0.538142 2.3:-9467254 None:intergenic
TTCTCAAACGCCAAGCTCGT+CGG 0.546210 2.3:+9467406 MS.gene028845:CDS
TCCGATGTACCTTCAGATGG+TGG 0.558015 2.3:-9467783 None:intergenic
TGAGAACATACCTTGCATAG+AGG 0.576045 2.3:-9467389 None:intergenic
CCATTCGGAAATTTCTATCG+TGG 0.576495 2.3:+9467279 MS.gene028845:CDS
CTTGGTTCGACAAATTGGAC+AGG 0.576681 2.3:-9467709 None:intergenic
GGTACATCGGAAGGTGCTAG+TGG 0.579497 2.3:+9467795 MS.gene028845:CDS
GAAGAGCGGTGATGATTGTA+GGG 0.588183 2.3:-9467509 None:intergenic
GATGGTGGTTTAAACGGAGT+GGG 0.596690 2.3:-9467768 None:intergenic
CCGTTTAAACCACCATCTGA+AGG 0.604021 2.3:+9467774 MS.gene028845:CDS
TGTAAGCATAGTTTCCATGT+GGG 0.606781 2.3:+9467654 MS.gene028845:CDS
CTGTCCAATTTGTCGAACCA+AGG 0.606859 2.3:+9467710 MS.gene028845:CDS
TAGCTCTTCACCTCTATGCA+AGG 0.608896 2.3:+9467379 MS.gene028845:CDS
CGTGGCTCTAGTTCAGGCCG+CGG 0.614093 2.3:-9467738 None:intergenic
CCTTCCGATGTACCTTCAGA+TGG 0.614287 2.3:-9467786 None:intergenic
AGATGGTGGTTTAAACGGAG+TGG 0.614631 2.3:-9467769 None:intergenic
CCATCTGAAGGTACATCGGA+AGG 0.615919 2.3:+9467786 MS.gene028845:CDS
GGTGAGGCTGAGTTGTTGAA+TGG 0.616178 2.3:-9467436 None:intergenic
GCCTGAACTAGAGCCACGTG+AGG 0.620506 2.3:+9467743 MS.gene028845:CDS
TTGTAAGCATAGTTTCCATG+TGG 0.628450 2.3:+9467653 MS.gene028845:CDS
ACCACCATCTGAAGGTACAT+CGG 0.629262 2.3:+9467782 MS.gene028845:CDS
GGTTCGACAAATTGGACAGG+TGG 0.630652 2.3:-9467706 None:intergenic
TGTAGGGTCGACTCCAGTGT+TGG 0.636583 2.3:-9467493 None:intergenic
CTAGGGATAGATCTTCGAGA+AGG 0.642858 2.3:+9467865 MS.gene028845:CDS
ACTTATCAATACAACCCACA+TGG 0.645105 2.3:-9467668 None:intergenic
CCACGATAGAAATTTCCGAA+TGG 0.652934 2.3:-9467279 None:intergenic
AACGGAGTGGGACCCTCACG+TGG 0.655540 2.3:-9467756 None:intergenic
GTACATCGGAAGGTGCTAGT+GGG 0.661144 2.3:+9467796 MS.gene028845:CDS
TAGAAGATGAAGAAATGATG+AGG 0.681985 2.3:+9467619 MS.gene028845:CDS
CCTGAACTAGAGCCACGTGA+GGG 0.685205 2.3:+9467744 MS.gene028845:CDS
TGTGAGCTTGAGCGACGGTG+AGG 0.690383 2.3:-9467452 None:intergenic
TTGAGTGTGAGCTTGAGCGA+CGG 0.704486 2.3:-9467457 None:intergenic
GTCGAACCAAGGTTGAACCG+CGG 0.716755 2.3:+9467721 MS.gene028845:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGCACTTGTATTAATTT+TGG + chr2.3:9467353-9467372 MS.gene028845:CDS 20.0%
! CATGATTATTATCATCCATT+CGG + chr2.3:9467264-9467283 MS.gene028845:CDS 25.0%
! GATAATAATCATGATCATCA+TGG - chr2.3:9467257-9467276 None:intergenic 25.0%
!! TTTTCGTAGAATTCTTACTA+GGG + chr2.3:9467848-9467867 MS.gene028845:CDS 25.0%
!!! TTTAGCCTTGAAGTATTTTT+GGG - chr2.3:9467825-9467844 None:intergenic 25.0%
TAATCATGATCATCATGGTT+TGG - chr2.3:9467252-9467271 None:intergenic 30.0%
TACAAGTGCTAAAGAAACTA+TGG - chr2.3:9467346-9467365 None:intergenic 30.0%
TAGAAGATGAAGAAATGATG+AGG + chr2.3:9467619-9467638 MS.gene028845:CDS 30.0%
TGGAAACTATGCTTACAATT+AGG - chr2.3:9467651-9467670 None:intergenic 30.0%
! CATGGTTTGGATCATTATTT+GGG - chr2.3:9467239-9467258 None:intergenic 30.0%
! CTTTTCGTAGAATTCTTACT+AGG + chr2.3:9467847-9467866 MS.gene028845:CDS 30.0%
! TCATGGTTTGGATCATTATT+TGG - chr2.3:9467240-9467259 None:intergenic 30.0%
!! TTTTGTTTGAAGAGGAAAGT+GGG - chr2.3:9467534-9467553 None:intergenic 30.0%
!!! GTTTAGCCTTGAAGTATTTT+TGG - chr2.3:9467826-9467845 None:intergenic 30.0%
!!! TTAGCCTTGAAGTATTTTTG+GGG - chr2.3:9467824-9467843 None:intergenic 30.0%
ACTTATCAATACAACCCACA+TGG - chr2.3:9467671-9467690 None:intergenic 35.0%
TGCGCATTCAACAATATTCT+TGG - chr2.3:9467583-9467602 None:intergenic 35.0%
TGTAAGCATAGTTTCCATGT+GGG + chr2.3:9467654-9467673 MS.gene028845:CDS 35.0%
TTGTAAGCATAGTTTCCATG+TGG + chr2.3:9467653-9467672 MS.gene028845:CDS 35.0%
! ATGTGGGTTGTATTGATAAG+TGG + chr2.3:9467670-9467689 MS.gene028845:CDS 35.0%
!! CTTTTGTTTGAAGAGGAAAG+TGG - chr2.3:9467535-9467554 None:intergenic 35.0%
!!! CTTGTTGCTTTTGTTTGAAG+AGG - chr2.3:9467542-9467561 None:intergenic 35.0%
!!! TAGCCTTGAAGTATTTTTGG+GGG - chr2.3:9467823-9467842 None:intergenic 35.0%
CCACGATAGAAATTTCCGAA+TGG - chr2.3:9467282-9467301 None:intergenic 40.0%
CCATTCGGAAATTTCTATCG+TGG + chr2.3:9467279-9467298 MS.gene028845:CDS 40.0%
TCTTCACGATGAGTACTAGA+AGG - chr2.3:9467897-9467916 None:intergenic 40.0%
TGAGAACATACCTTGCATAG+AGG - chr2.3:9467392-9467411 None:intergenic 40.0%
! CCTTCAGATGGTGGTTTAAA+CGG - chr2.3:9467777-9467796 None:intergenic 40.0%
! TCAACCTTGGTTCGACAAAT+TGG - chr2.3:9467717-9467736 None:intergenic 40.0%
CACGATGAGTACTAGAAGGT+TGG - chr2.3:9467893-9467912 None:intergenic 45.0%
CCGTTTAAACCACCATCTGA+AGG + chr2.3:9467774-9467793 MS.gene028845:CDS 45.0%
CTAGGGATAGATCTTCGAGA+AGG + chr2.3:9467865-9467884 MS.gene028845:CDS 45.0%
CTGTCCAATTTGTCGAACCA+AGG + chr2.3:9467710-9467729 MS.gene028845:CDS 45.0%
GAAGAGCGGTGATGATTGTA+GGG - chr2.3:9467512-9467531 None:intergenic 45.0%
GGTCCCCCAAAAATACTTCA+AGG + chr2.3:9467817-9467836 MS.gene028845:CDS 45.0%
TAGCTCTTCACCTCTATGCA+AGG + chr2.3:9467379-9467398 MS.gene028845:CDS 45.0%
TCAAGCTCACACTCAATTCG+CGG + chr2.3:9467464-9467483 MS.gene028845:CDS 45.0%
! ACCACCATCTGAAGGTACAT+CGG + chr2.3:9467782-9467801 MS.gene028845:CDS 45.0%
! AGATGGTGGTTTAAACGGAG+TGG - chr2.3:9467772-9467791 None:intergenic 45.0%
! CTTGGTTCGACAAATTGGAC+AGG - chr2.3:9467712-9467731 None:intergenic 45.0%
! GATGGTGGTTTAAACGGAGT+GGG - chr2.3:9467771-9467790 None:intergenic 45.0%
CCTTCCGATGTACCTTCAGA+TGG - chr2.3:9467789-9467808 None:intergenic 50.0%
GAAGAGGAAAGTGGGAAGAG+CGG - chr2.3:9467526-9467545 None:intergenic 50.0%
GGAAGAGCGGTGATGATTGT+AGG - chr2.3:9467513-9467532 None:intergenic 50.0%
GGTGAGGCTGAGTTGTTGAA+TGG - chr2.3:9467439-9467458 None:intergenic 50.0%
GGTTCGACAAATTGGACAGG+TGG - chr2.3:9467709-9467728 None:intergenic 50.0%
TCCGATGTACCTTCAGATGG+TGG - chr2.3:9467786-9467805 None:intergenic 50.0%
TTCTCAAACGCCAAGCTCGT+CGG + chr2.3:9467406-9467425 MS.gene028845:CDS 50.0%
TTGAGTGTGAGCTTGAGCGA+CGG - chr2.3:9467460-9467479 None:intergenic 50.0%
! CCATCTGAAGGTACATCGGA+AGG + chr2.3:9467786-9467805 MS.gene028845:CDS 50.0%
!! GTACATCGGAAGGTGCTAGT+GGG + chr2.3:9467796-9467815 MS.gene028845:CDS 50.0%
CCTGAACTAGAGCCACGTGA+GGG + chr2.3:9467744-9467763 MS.gene028845:CDS 55.0%
GTCGAACCAAGGTTGAACCG+CGG + chr2.3:9467721-9467740 MS.gene028845:CDS 55.0%
! TGTAGGGTCGACTCCAGTGT+TGG - chr2.3:9467496-9467515 None:intergenic 55.0%
!! GGTACATCGGAAGGTGCTAG+TGG + chr2.3:9467795-9467814 MS.gene028845:CDS 55.0%
GCCTGAACTAGAGCCACGTG+AGG + chr2.3:9467743-9467762 MS.gene028845:CDS 60.0%
TGTGAGCTTGAGCGACGGTG+AGG - chr2.3:9467455-9467474 None:intergenic 60.0%
TTCAGGCCGCGGTTCAACCT+TGG - chr2.3:9467730-9467749 None:intergenic 60.0%
!! CCCTCACGTGGCTCTAGTTC+AGG - chr2.3:9467747-9467766 None:intergenic 60.0%
AACGGAGTGGGACCCTCACG+TGG - chr2.3:9467759-9467778 None:intergenic 65.0%
TGGCAGCTCTCCGACGAGCT+TGG - chr2.3:9467419-9467438 None:intergenic 65.0%
TTCGCGGAGCCAGCCAACAC+TGG + chr2.3:9467480-9467499 MS.gene028845:CDS 65.0%
!! CGTGGCTCTAGTTCAGGCCG+CGG - chr2.3:9467741-9467760 None:intergenic 65.0%
!! GGGTCGACTCCAGTGTTGGC+TGG - chr2.3:9467492-9467511 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9467228 9467950 9467228 ID=MS.gene028845
chr2.3 mRNA 9467228 9467950 9467228 ID=MS.gene028845.t1;Parent=MS.gene028845
chr2.3 exon 9467228 9467950 9467228 ID=MS.gene028845.t1.exon1;Parent=MS.gene028845.t1
chr2.3 CDS 9467228 9467950 9467228 ID=cds.MS.gene028845.t1;Parent=MS.gene028845.t1
Gene Sequence

>MS.gene028845

ATGAGTAACCCAAATAATGATCCAAACCATGATGATCATGATTATTATCATCCATTCGGAAATTTCTATCGTGGATCAAGTCAGAGTAACTTCAACAAAAAAATCTTGCTTACTGCCATAGTTTCTTTAGCACTTGTATTAATTTTGGTCTTAGCTCTTCACCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGTCGGAGAGCTGCCATTCAACAACTCAGCCTCACCGTCGCTCAAGCTCACACTCAATTCGCGGAGCCAGCCAACACTGGAGTCGACCCTACAATCATCACCGCTCTTCCCACTTTCCTCTTCAAACAAAAGCAACAAGAAGAAAACAAAAATGTTTCCAAGAATATTGTTGAATGCGCAGTGTGTTTGAGTGTTGTAGAAGATGAAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCATGTGGGTTGTATTGATAAGTGGTTAGCTTCGCATTCCACCTGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCCTGAACTAGAGCCACGTGAGGGTCCCACTCCGTTTAAACCACCATCTGAAGGTACATCGGAAGGTGCTAGTGGGTCCCCCAAAAATACTTCAAGGCTAAACTCTTTTCGTAGAATTCTTACTAGGGATAGATCTTCGAGAAGGATCCAACCTTCTAGTACTCATCGTGAAGATATTACTATTGATCGTGATTTAGAGAGCCAGTAA
Protein sequence

>MS.gene028845.t1

MSNPNNDPNHDDHDYYHPFGNFYRGSSQSNFNKKILLTAIVSLALVLILVLALHLYARYVLKRQARRRAAIQQLSLTVAQAHTQFAEPANTGVDPTIITALPTFLFKQKQQEENKNVSKNIVECAVCLSVVEDEEMMRLLPNCKHSFHVGCIDKWLASHSTCPICRTKVEPRPELEPREGPTPFKPPSEGTSEGASGSPKNTSRLNSFRRILTRDRSSRRIQPSSTHREDITIDRDLESQ