Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02900.t1 | XP_003594302.1 | 88.6 | 341 | 34 | 1 | 1 | 336 | 1 | 341 | 1.00E-114 | 423.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02900.t1 | Q8TBZ6 | 45.5 | 176 | 92 | 3 | 111 | 284 | 103 | 276 | 1.1e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02900.t1 | G7IQ11 | 88.6 | 341 | 34 | 1 | 1 | 336 | 1 | 341 | 7.5e-115 | 423.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02900 | MS.gene06380 | PPI |
| MS.gene02900 | MS.gene40912 | PPI |
| MS.gene02900 | MS.gene013296 | PPI |
| MS.gene049266 | MS.gene02900 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02900.t1 | MTR_2g027010 | 93.548 | 341 | 17 | 1 | 1 | 336 | 1 | 341 | 0.0 | 562 |
| MS.gene02900.t1 | MTR_1g032210 | 81.250 | 64 | 7 | 1 | 5 | 63 | 48 | 111 | 4.60e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02900.t1 | AT5G47680 | 66.770 | 322 | 104 | 2 | 7 | 325 | 16 | 337 | 4.71e-134 | 385 |
Find 76 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTAAAGCGAAAGAATT+AGG | 0.235954 | 2.4:+61889960 | MS.gene02900:CDS |
| TTGAACAAGATATATATAAT+TGG | 0.269988 | 2.4:+61891466 | MS.gene02900:CDS |
| CCTGCACATCTTTGGCTAAC+TGG | 0.275764 | 2.4:+61891283 | MS.gene02900:CDS |
| TAGCTTCTTCTCCGCGTTCT+TGG | 0.297523 | 2.4:-61889721 | None:intergenic |
| TGGTGGTGGAACAGTGGATT+CGG | 0.312822 | 2.4:-61889679 | None:intergenic |
| TTGAAGCGAGAATGAGTTTA+CGG | 0.339611 | 2.4:+61889886 | MS.gene02900:CDS |
| CAAACAGCTAAACTTCCTAT+TGG | 0.340136 | 2.4:+61891553 | MS.gene02900:CDS |
| TCATCAACAAGTTTGTTAGA+AGG | 0.359781 | 2.4:-61892620 | None:intergenic |
| GTGAAACCCCTGCACATCTT+TGG | 0.363917 | 2.4:+61891275 | MS.gene02900:CDS |
| GTGGATTAGTTGATAGGAAT+AGG | 0.366874 | 2.4:+61891488 | MS.gene02900:CDS |
| TTGTTAAAGCGAAAGAATTA+GGG | 0.371694 | 2.4:+61889961 | MS.gene02900:CDS |
| GGCAGATCGTAAGGATGATT+TGG | 0.373805 | 2.4:+61891399 | MS.gene02900:CDS |
| CTTGAAGATGTCTAGTTCTC+AGG | 0.377122 | 2.4:+61891582 | MS.gene02900:CDS |
| TAATTGGTGGATTAGTTGAT+AGG | 0.387931 | 2.4:+61891482 | MS.gene02900:CDS |
| AGAGAAGAAAGCGGCGGCGA+AGG | 0.418398 | 2.4:+61889776 | MS.gene02900:CDS |
| AATTCGTAGTCTCGTTCAAC+AGG | 0.419056 | 2.4:+61890034 | MS.gene02900:CDS |
| AGAAATACTACTCAAGTTCC+TGG | 0.437281 | 2.4:+61892418 | MS.gene02900:CDS |
| TCTGAAGTGGGTTGTGGTGG+TGG | 0.439329 | 2.4:-61889693 | None:intergenic |
| AGAGAGAATGGAGAAAAGGT+TGG | 0.447049 | 2.4:+61889911 | MS.gene02900:CDS |
| AGAAGGAAACTGAACGGAAA+AGG | 0.448551 | 2.4:+61889808 | MS.gene02900:CDS |
| GGTGGTGGAACAGTGGATTC+GGG | 0.452897 | 2.4:-61889678 | None:intergenic |
| CATCAACAAGTTTGTTAGAA+GGG | 0.461175 | 2.4:-61892619 | None:intergenic |
| AACAAGATATATATAATTGG+TGG | 0.462299 | 2.4:+61891469 | MS.gene02900:CDS |
| GAACAGTGGATTCGGGTTCG+TGG | 0.463438 | 2.4:-61889671 | None:intergenic |
| CCAGTTAGCCAAAGATGTGC+AGG | 0.463576 | 2.4:-61891283 | None:intergenic |
| TAAGTCTTATATCGAAGTAT+TGG | 0.470291 | 2.4:+61891378 | MS.gene02900:CDS |
| GTGGATTCGGGTTCGTGGGT+TGG | 0.478057 | 2.4:-61889666 | None:intergenic |
| AGCTAGCGAAACAACAAAGA+TGG | 0.480079 | 2.4:+61889739 | MS.gene02900:CDS |
| GAGAGTTCTGAAGTGGGTTG+TGG | 0.480250 | 2.4:-61889699 | None:intergenic |
| GAGTTTACGGAAAGAGAGAA+TGG | 0.480649 | 2.4:+61889899 | MS.gene02900:CDS |
| AGTTCTGAAGTGGGTTGTGG+TGG | 0.482591 | 2.4:-61889696 | None:intergenic |
| AGTTGATAGGAATAGGTTCA+AGG | 0.488910 | 2.4:+61891495 | MS.gene02900:CDS |
| CGAAGTATTGGCAGATCGTA+AGG | 0.491306 | 2.4:+61891390 | MS.gene02900:CDS |
| CTGAACGGAAAAGGAAGGAA+TGG | 0.495923 | 2.4:+61889817 | MS.gene02900:CDS |
| AACTGGCTGCGAAGGAGAGA+TGG | 0.499121 | 2.4:+61891300 | MS.gene02900:CDS |
| GGAAAGAGAGAATGGAGAAA+AGG | 0.501934 | 2.4:+61889907 | MS.gene02900:CDS |
| AGAAAGTATAGCGGGGATAA+CGG | 0.504106 | 2.4:+61889842 | MS.gene02900:CDS |
| TAGGTTCAAGGGGATAACTA+TGG | 0.506219 | 2.4:+61891507 | MS.gene02900:CDS |
| AACAGTGGATTCGGGTTCGT+GGG | 0.513268 | 2.4:-61889670 | None:intergenic |
| AGATACCGGGATTTGATAAG+TGG | 0.516271 | 2.4:+61891338 | MS.gene02900:CDS |
| ATGTATTGCTATGCGGTGAA+TGG | 0.524164 | 2.4:+61891247 | MS.gene02900:CDS |
| GAATGGGAAGAAAGTATAGC+GGG | 0.525752 | 2.4:+61889834 | MS.gene02900:CDS |
| TTCTTGGAGAGTTCTGAAGT+GGG | 0.527632 | 2.4:-61889705 | None:intergenic |
| GTTCTTGGAGAGTTCTGAAG+TGG | 0.533454 | 2.4:-61889706 | None:intergenic |
| GGCGAAGGAGCAGAAGAAGA+AGG | 0.534673 | 2.4:+61889791 | MS.gene02900:CDS |
| AGTTCCTGGAGACAAGGGAT+TGG | 0.534892 | 2.4:+61892432 | MS.gene02900:CDS |
| ATCTTCAAGAAATTGCCAAT+AGG | 0.540462 | 2.4:-61891568 | None:intergenic |
| TACTCAAGTTCCTGGAGACA+AGG | 0.542557 | 2.4:+61892426 | MS.gene02900:CDS |
| CTTTGGCTAACTGGCTGCGA+AGG | 0.546041 | 2.4:+61891292 | MS.gene02900:CDS |
| GGGTTGTGGTGGTGGAACAG+TGG | 0.548162 | 2.4:-61889685 | None:intergenic |
| GTTGATAGGAATAGGTTCAA+GGG | 0.551035 | 2.4:+61891496 | MS.gene02900:CDS |
| AGATCACAAGCTGATTCAGA+AGG | 0.558701 | 2.4:+61892491 | MS.gene02900:CDS |
| TGAACGGAAAAGGAAGGAAT+GGG | 0.562057 | 2.4:+61889818 | MS.gene02900:CDS |
| AACGGAGGAAGAGAGAGTGA+AGG | 0.562848 | 2.4:+61889860 | MS.gene02900:CDS |
| ATGATCCACTTATCAAATCC+CGG | 0.563131 | 2.4:-61891343 | None:intergenic |
| GCTAGCGAAACAACAAAGAT+GGG | 0.569754 | 2.4:+61889740 | MS.gene02900:CDS |
| GTATCTAACGGCTGATTCAG+AGG | 0.575403 | 2.4:+61891423 | MS.gene02900:CDS |
| GGATGATTTGGTGTATCTAA+CGG | 0.578478 | 2.4:+61891411 | MS.gene02900:CDS |
| TTGATAGGAATAGGTTCAAG+GGG | 0.582030 | 2.4:+61891497 | MS.gene02900:CDS |
| TGCAGATAATACTGTAGATG+AGG | 0.589269 | 2.4:+61892517 | MS.gene02900:CDS |
| GGAAACTGAACGGAAAAGGA+AGG | 0.593141 | 2.4:+61889812 | MS.gene02900:CDS |
| ACGAGACTACGAATTTCTTG+AGG | 0.608427 | 2.4:-61890026 | None:intergenic |
| CAGTTAGCCAAAGATGTGCA+GGG | 0.609008 | 2.4:-61891282 | None:intergenic |
| TGATAAGTGGATCATCGAGA+AGG | 0.617301 | 2.4:+61891351 | MS.gene02900:CDS |
| AGAAGAAGAAGGAAACTGAA+CGG | 0.617838 | 2.4:+61889802 | MS.gene02900:CDS |
| ATGGAGAAAGCACAAGAGCA+AGG | 0.622205 | 2.4:+61891526 | MS.gene02900:CDS |
| TCTTTGCTGTTATCCCTCAG+AGG | 0.622550 | 2.4:+61892465 | MS.gene02900:CDS |
| ACTCAAGTTCCTGGAGACAA+GGG | 0.624343 | 2.4:+61892427 | MS.gene02900:CDS |
| AAAGAAAGCAGAGAAGAAAG+CGG | 0.626250 | 2.4:+61889767 | MS.gene02900:CDS |
| GAAAGCAGAGAAGAAAGCGG+CGG | 0.640363 | 2.4:+61889770 | MS.gene02900:CDS |
| AGTTAGCCAAAGATGTGCAG+GGG | 0.659607 | 2.4:-61891281 | None:intergenic |
| TTCAGAACTCTCCAAGAACG+CGG | 0.669890 | 2.4:+61889710 | MS.gene02900:CDS |
| GGAATGGGAAGAAAGTATAG+CGG | 0.683390 | 2.4:+61889833 | MS.gene02900:CDS |
| AAGTATAGCGGGGATAACGG+AGG | 0.708957 | 2.4:+61889845 | MS.gene02900:CDS |
| AATGGGAAGAAAGTATAGCG+GGG | 0.715050 | 2.4:+61889835 | MS.gene02900:CDS |
| GTAGATAATGTATTGCTATG+CGG | 0.772427 | 2.4:+61891240 | MS.gene02900:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGAAATTCAAAATT+AGG | - | chr2.4:61890654-61890673 | None:intergenic | 10.0% |
| !! | AAAAATGAAATTCAAAATTA+GGG | - | chr2.4:61890653-61890672 | None:intergenic | 10.0% |
| !!! | AATTAACAAATTTTTTTGAT+GGG | + | chr2.4:61890059-61890078 | MS.gene02900:intron | 10.0% |
| !!! | CATATATTTTTGTTATAAAT+TGG | + | chr2.4:61890943-61890962 | MS.gene02900:intron | 10.0% |
| !!! | TAAATTATTTTGATTTGAAA+TGG | + | chr2.4:61890101-61890120 | MS.gene02900:intron | 10.0% |
| !! | AGTGATTATATTTATATGAA+AGG | + | chr2.4:61890151-61890170 | MS.gene02900:intron | 15.0% |
| !! | ATTATATTTATATGAAAGGT+CGG | + | chr2.4:61890155-61890174 | MS.gene02900:intron | 15.0% |
| !! | TGATCTATGAAATTATAATT+TGG | + | chr2.4:61892017-61892036 | MS.gene02900:intron | 15.0% |
| !! | TTGAACAAGATATATATAAT+TGG | + | chr2.4:61891466-61891485 | MS.gene02900:CDS | 15.0% |
| !!! | ATTTTTGTTATAAATTGGTA+GGG | + | chr2.4:61890948-61890967 | MS.gene02900:intron | 15.0% |
| !!! | CTTATTTTCATTAGTTTATA+TGG | + | chr2.4:61890287-61890306 | MS.gene02900:intron | 15.0% |
| !!! | GAATTAACAAATTTTTTTGA+TGG | + | chr2.4:61890058-61890077 | MS.gene02900:intron | 15.0% |
| !!! | TATTTTTGTTATAAATTGGT+AGG | + | chr2.4:61890947-61890966 | MS.gene02900:intron | 15.0% |
| !! | AACAAGATATATATAATTGG+TGG | + | chr2.4:61891469-61891488 | MS.gene02900:CDS | 20.0% |
| !! | GTACTATGTATAGATTATAT+TGG | + | chr2.4:61891713-61891732 | MS.gene02900:intron | 20.0% |
| !! | TAATCAATTGAAAAAGATAC+CGG | + | chr2.4:61891324-61891343 | MS.gene02900:CDS | 20.0% |
| !!! | AAGTTTGTATTTTGTATCAT+TGG | + | chr2.4:61891679-61891698 | MS.gene02900:intron | 20.0% |
| !!! | ACTTGATAACACTTAAAAAT+GGG | + | chr2.4:61892322-61892341 | MS.gene02900:intron | 20.0% |
| !!! | CTATATTTTTGAATGTGTAT+TGG | + | chr2.4:61891073-61891092 | MS.gene02900:intron | 20.0% |
| !!! | TAATATTTCTTGTTGTGTAT+TGG | + | chr2.4:61891190-61891209 | MS.gene02900:intron | 20.0% |
| !!! | TACTTGATAACACTTAAAAA+TGG | + | chr2.4:61892321-61892340 | MS.gene02900:intron | 20.0% |
| ! | AAGTAAAAAGAAATGTGTTG+AGG | + | chr2.4:61892592-61892611 | MS.gene02900:CDS | 25.0% |
| ! | AATCAATTGAAAAAGATACC+GGG | + | chr2.4:61891325-61891344 | MS.gene02900:CDS | 25.0% |
| ! | CGATATATGTTTAGATAAGA+CGG | + | chr2.4:61891113-61891132 | MS.gene02900:intron | 25.0% |
| ! | GAACTCAAAAATTTCTATAG+CGG | - | chr2.4:61890726-61890745 | None:intergenic | 25.0% |
| ! | TATATGAGAAACATCCAAAT+TGG | - | chr2.4:61890929-61890948 | None:intergenic | 25.0% |
| ! | TTGTTAAAGCGAAAGAATTA+GGG | + | chr2.4:61889961-61889980 | MS.gene02900:CDS | 25.0% |
| !! | ATTGCTGATCTTCAATTTTA+TGG | + | chr2.4:61892239-61892258 | MS.gene02900:intron | 25.0% |
| !! | TAAGTCTTATATCGAAGTAT+TGG | + | chr2.4:61891378-61891397 | MS.gene02900:CDS | 25.0% |
| !! | TGTATTGGTAAATGATAGAA+TGG | + | chr2.4:61891088-61891107 | MS.gene02900:intron | 25.0% |
| !! | TTTTACAATCTCAACCAATT+TGG | + | chr2.4:61890912-61890931 | MS.gene02900:intron | 25.0% |
| !!! | AAAATTTCTATAGCGGATTA+CGG | - | chr2.4:61890719-61890738 | None:intergenic | 25.0% |
| !!! | TCTATCACATTAGTCTTTTT+TGG | + | chr2.4:61892040-61892059 | MS.gene02900:intron | 25.0% |
| !!! | TGGGTTTTTTAGATTGTTTA+CGG | + | chr2.4:61890078-61890097 | MS.gene02900:intron | 25.0% |
| AAACATTTGTGAGACTGTTT+AGG | + | chr2.4:61890213-61890232 | MS.gene02900:intron | 30.0% | |
| AAATGTCTTAGACACACAAA+TGG | - | chr2.4:61892353-61892372 | None:intergenic | 30.0% | |
| AATGTAAAAGAATCTACCGA+TGG | - | chr2.4:61891898-61891917 | None:intergenic | 30.0% | |
| ACCATTTAGCTGAAATTACT+GGG | + | chr2.4:61891954-61891973 | MS.gene02900:intron | 30.0% | |
| AGAAAAATGAGAAGAAAGAG+AGG | + | chr2.4:61889937-61889956 | MS.gene02900:CDS | 30.0% | |
| ATCTTCAAGAAATTGCCAAT+AGG | - | chr2.4:61891571-61891590 | None:intergenic | 30.0% | |
| ATGGAGATTACTTTGCTAAT+AGG | + | chr2.4:61890120-61890139 | MS.gene02900:intron | 30.0% | |
| ATTCAGTCCTACATCTATAA+AGG | - | chr2.4:61892177-61892196 | None:intergenic | 30.0% | |
| ATTTATATGAAAGGTCGGTT+TGG | + | chr2.4:61890160-61890179 | MS.gene02900:intron | 30.0% | |
| CAAAAGAGAGAGAGAAAAAA+TGG | + | chr2.4:61891835-61891854 | MS.gene02900:intron | 30.0% | |
| CTTGTTAAAGCGAAAGAATT+AGG | + | chr2.4:61889960-61889979 | MS.gene02900:CDS | 30.0% | |
| GTAGATAATGTATTGCTATG+CGG | + | chr2.4:61891240-61891259 | MS.gene02900:intron | 30.0% | |
| TAAATCACCAACTTAGTCTA+GGG | - | chr2.4:61892303-61892322 | None:intergenic | 30.0% | |
| TATTTCTCATTTGAGCTTTC+AGG | + | chr2.4:61892373-61892392 | MS.gene02900:intron | 30.0% | |
| TGAAGAAAAAGATGATCTAC+TGG | + | chr2.4:61892568-61892587 | MS.gene02900:CDS | 30.0% | |
| TGTAAATTAAGCTGTGAACA+AGG | + | chr2.4:61890394-61890413 | MS.gene02900:intron | 30.0% | |
| TTATAGATGTAGGACTGAAT+TGG | + | chr2.4:61892177-61892196 | MS.gene02900:intron | 30.0% | |
| TTCAGTCCTACATCTATAAA+GGG | - | chr2.4:61892176-61892195 | None:intergenic | 30.0% | |
| TTGTCAATAGCACACTATAA+CGG | + | chr2.4:61890462-61890481 | MS.gene02900:intron | 30.0% | |
| ! | ATGTATTTGATAACAGAGTC+AGG | + | chr2.4:61890806-61890825 | MS.gene02900:intron | 30.0% |
| ! | TACAAACTTTTAGCAGTCAA+AGG | - | chr2.4:61891668-61891687 | None:intergenic | 30.0% |
| ! | TGTATTGGTAAATGATGGAA+TGG | + | chr2.4:61891205-61891224 | MS.gene02900:intron | 30.0% |
| ! | TGTTGTGTATTGGTAAATGA+TGG | + | chr2.4:61891200-61891219 | MS.gene02900:intron | 30.0% |
| !! | AAATTTCTATAGCGGATTAC+GGG | - | chr2.4:61890718-61890737 | None:intergenic | 30.0% |
| !! | CATCAACAAGTTTGTTAGAA+GGG | - | chr2.4:61892622-61892641 | None:intergenic | 30.0% |
| !! | TAATTGGTGGATTAGTTGAT+AGG | + | chr2.4:61891482-61891501 | MS.gene02900:CDS | 30.0% |
| !! | TCATCAACAAGTTTGTTAGA+AGG | - | chr2.4:61892623-61892642 | None:intergenic | 30.0% |
| AAAGAAAGCAGAGAAGAAAG+CGG | + | chr2.4:61889767-61889786 | MS.gene02900:CDS | 35.0% | |
| AACCCTCTTGTATTTGCTTT+GGG | + | chr2.4:61891627-61891646 | MS.gene02900:intron | 35.0% | |
| AAGAGAGAGAGAAAAAATGG+AGG | + | chr2.4:61891838-61891857 | MS.gene02900:intron | 35.0% | |
| AGAAATACTACTCAAGTTCC+TGG | + | chr2.4:61892418-61892437 | MS.gene02900:CDS | 35.0% | |
| AGAAGAAGAAGGAAACTGAA+CGG | + | chr2.4:61889802-61889821 | MS.gene02900:CDS | 35.0% | |
| AGAGACGATTGAGAGAAAAT+AGG | + | chr2.4:61891793-61891812 | MS.gene02900:intron | 35.0% | |
| AGAGAGAGAGAAAAAATGGA+GGG | + | chr2.4:61891839-61891858 | MS.gene02900:intron | 35.0% | |
| ATGATCCACTTATCAAATCC+CGG | - | chr2.4:61891346-61891365 | None:intergenic | 35.0% | |
| ATGTGTCAAAGTGACTAATG+TGG | + | chr2.4:61892085-61892104 | MS.gene02900:intron | 35.0% | |
| CAAACAGCTAAACTTCCTAT+TGG | + | chr2.4:61891553-61891572 | MS.gene02900:CDS | 35.0% | |
| CACCATTTAGCTGAAATTAC+TGG | + | chr2.4:61891953-61891972 | MS.gene02900:intron | 35.0% | |
| CCATTTAGCTGAAATTACTG+GGG | + | chr2.4:61891955-61891974 | MS.gene02900:intron | 35.0% | |
| GAGACGATTGAGAGAAAATA+GGG | + | chr2.4:61891794-61891813 | MS.gene02900:intron | 35.0% | |
| GTAAATCACCAACTTAGTCT+AGG | - | chr2.4:61892304-61892323 | None:intergenic | 35.0% | |
| TAAATTGCCCTAGACTAAGT+TGG | + | chr2.4:61892293-61892312 | MS.gene02900:intron | 35.0% | |
| TAACCCTCTTGTATTTGCTT+TGG | + | chr2.4:61891626-61891645 | MS.gene02900:intron | 35.0% | |
| TGCAGATAATACTGTAGATG+AGG | + | chr2.4:61892517-61892536 | MS.gene02900:CDS | 35.0% | |
| TTGAAGATCAGCAATCACAT+TGG | - | chr2.4:61892234-61892253 | None:intergenic | 35.0% | |
| TTGAAGCGAGAATGAGTTTA+CGG | + | chr2.4:61889886-61889905 | MS.gene02900:CDS | 35.0% | |
| TTGATAGGAATAGGTTCAAG+GGG | + | chr2.4:61891497-61891516 | MS.gene02900:CDS | 35.0% | |
| ! | GTTGATAGGAATAGGTTCAA+GGG | + | chr2.4:61891496-61891515 | MS.gene02900:CDS | 35.0% |
| !! | AGTTGATAGGAATAGGTTCA+AGG | + | chr2.4:61891495-61891514 | MS.gene02900:CDS | 35.0% |
| !! | GGATGATTTGGTGTATCTAA+CGG | + | chr2.4:61891411-61891430 | MS.gene02900:CDS | 35.0% |
| !! | GTGGATTAGTTGATAGGAAT+AGG | + | chr2.4:61891488-61891507 | MS.gene02900:CDS | 35.0% |
| AAAGAATCTACCGATGGATC+CGG | - | chr2.4:61891892-61891911 | None:intergenic | 40.0% | |
| AATTCGTAGTCTCGTTCAAC+AGG | + | chr2.4:61890034-61890053 | MS.gene02900:CDS | 40.0% | |
| ACGAGACTACGAATTTCTTG+AGG | - | chr2.4:61890029-61890048 | None:intergenic | 40.0% | |
| AGAAGGAAACTGAACGGAAA+AGG | + | chr2.4:61889808-61889827 | MS.gene02900:CDS | 40.0% | |
| AGAGAGAATGGAGAAAAGGT+TGG | + | chr2.4:61889911-61889930 | MS.gene02900:CDS | 40.0% | |
| AGAGAGAGAAAAAATGGAGG+GGG | + | chr2.4:61891841-61891860 | MS.gene02900:intron | 40.0% | |
| AGATACCGGGATTTGATAAG+TGG | + | chr2.4:61891338-61891357 | MS.gene02900:CDS | 40.0% | |
| AGCCCAAAGCAAATACAAGA+GGG | - | chr2.4:61891632-61891651 | None:intergenic | 40.0% | |
| AGCTAGCGAAACAACAAAGA+TGG | + | chr2.4:61889739-61889758 | MS.gene02900:CDS | 40.0% | |
| ATGTATTGCTATGCGGTGAA+TGG | + | chr2.4:61891247-61891266 | MS.gene02900:CDS | 40.0% | |
| ATTGGATCATCTTCTGCAAG+TGG | + | chr2.4:61891731-61891750 | MS.gene02900:intron | 40.0% | |
| CACTATAAGTGGTTGAAGAG+CGG | + | chr2.4:61890551-61890570 | MS.gene02900:intron | 40.0% | |
| CCCCAGTAATTTCAGCTAAA+TGG | - | chr2.4:61891958-61891977 | None:intergenic | 40.0% | |
| CTATAAAGGGTCGCTCAATT+TGG | - | chr2.4:61892163-61892182 | None:intergenic | 40.0% | |
| GAGAGAGAGAAAAAATGGAG+GGG | + | chr2.4:61891840-61891859 | MS.gene02900:intron | 40.0% | |
| GAGTTTACGGAAAGAGAGAA+TGG | + | chr2.4:61889899-61889918 | MS.gene02900:CDS | 40.0% | |
| GCAACCAACATTCTCAACTT+AGG | - | chr2.4:61890420-61890439 | None:intergenic | 40.0% | |
| GCTAGCGAAACAACAAAGAT+GGG | + | chr2.4:61889740-61889759 | MS.gene02900:CDS | 40.0% | |
| GGAAAGAGAGAATGGAGAAA+AGG | + | chr2.4:61889907-61889926 | MS.gene02900:CDS | 40.0% | |
| TAGGTTCAAGGGGATAACTA+TGG | + | chr2.4:61891507-61891526 | MS.gene02900:CDS | 40.0% | |
| TGAACGGAAAAGGAAGGAAT+GGG | + | chr2.4:61889818-61889837 | MS.gene02900:CDS | 40.0% | |
| TGATAAGTGGATCATCGAGA+AGG | + | chr2.4:61891351-61891370 | MS.gene02900:CDS | 40.0% | |
| TGGCTGCTATTGCAAACTTT+GGG | + | chr2.4:61890612-61890631 | MS.gene02900:intron | 40.0% | |
| ! | AAGGCCTAAGTTGAGAATGT+TGG | + | chr2.4:61890413-61890432 | MS.gene02900:intron | 40.0% |
| ! | AATGGGAAGAAAGTATAGCG+GGG | + | chr2.4:61889835-61889854 | MS.gene02900:CDS | 40.0% |
| ! | AGAAAGTATAGCGGGGATAA+CGG | + | chr2.4:61889842-61889861 | MS.gene02900:CDS | 40.0% |
| ! | AGATCACAAGCTGATTCAGA+AGG | + | chr2.4:61892491-61892510 | MS.gene02900:CDS | 40.0% |
| ! | CTTGTGATCTTTTCCTCTGA+GGG | - | chr2.4:61892481-61892500 | None:intergenic | 40.0% |
| ! | GAATGGGAAGAAAGTATAGC+GGG | + | chr2.4:61889834-61889853 | MS.gene02900:CDS | 40.0% |
| ! | GGAATGGGAAGAAAGTATAG+CGG | + | chr2.4:61889833-61889852 | MS.gene02900:CDS | 40.0% |
| !! | CTTGAAGATGTCTAGTTCTC+AGG | + | chr2.4:61891582-61891601 | MS.gene02900:CDS | 40.0% |
| !! | TTCTTGGAGAGTTCTGAAGT+GGG | - | chr2.4:61889708-61889727 | None:intergenic | 40.0% |
| AACAGAGTCAGGCAAAGCAA+AGG | + | chr2.4:61890817-61890836 | MS.gene02900:intron | 45.0% | |
| ACTCAAGTTCCTGGAGACAA+GGG | + | chr2.4:61892427-61892446 | MS.gene02900:CDS | 45.0% | |
| ACTGTTGCTGCTACTCTCAA+TGG | - | chr2.4:61890528-61890547 | None:intergenic | 45.0% | |
| AGCACACTATAACGGTGTAG+CGG | + | chr2.4:61890470-61890489 | MS.gene02900:intron | 45.0% | |
| AGTTAGCCAAAGATGTGCAG+GGG | - | chr2.4:61891284-61891303 | None:intergenic | 45.0% | |
| ATCCCACTACTATAGCGGTT+TGG | + | chr2.4:61890589-61890608 | MS.gene02900:intron | 45.0% | |
| ATTGAGAGTAGCAGCAACAG+TGG | + | chr2.4:61890527-61890546 | MS.gene02900:intron | 45.0% | |
| CACCAAACCGCTATAGTAGT+GGG | - | chr2.4:61890594-61890613 | None:intergenic | 45.0% | |
| CAGCCCAAAGCAAATACAAG+AGG | - | chr2.4:61891633-61891652 | None:intergenic | 45.0% | |
| CAGTTAGCCAAAGATGTGCA+GGG | - | chr2.4:61891285-61891304 | None:intergenic | 45.0% | |
| CGCTCTTCAACCACTTATAG+TGG | - | chr2.4:61890553-61890572 | None:intergenic | 45.0% | |
| CTGAACGGAAAAGGAAGGAA+TGG | + | chr2.4:61889817-61889836 | MS.gene02900:CDS | 45.0% | |
| GAGAGAGAAAAAATGGAGGG+GGG | + | chr2.4:61891842-61891861 | MS.gene02900:intron | 45.0% | |
| GAGCGACCCTTTATAGATGT+AGG | + | chr2.4:61892167-61892186 | MS.gene02900:intron | 45.0% | |
| GCGTAATCCCACTACTATAG+CGG | + | chr2.4:61890584-61890603 | MS.gene02900:intron | 45.0% | |
| GGAAACTGAACGGAAAAGGA+AGG | + | chr2.4:61889812-61889831 | MS.gene02900:CDS | 45.0% | |
| GGCAGATCGTAAGGATGATT+TGG | + | chr2.4:61891399-61891418 | MS.gene02900:CDS | 45.0% | |
| GGCTGCTATTGCAAACTTTG+GGG | + | chr2.4:61890613-61890632 | MS.gene02900:intron | 45.0% | |
| GGTTGGAGAGTGATCCTATA+GGG | + | chr2.4:61891863-61891882 | MS.gene02900:intron | 45.0% | |
| GTGGCTGCTATTGCAAACTT+TGG | + | chr2.4:61890611-61890630 | MS.gene02900:intron | 45.0% | |
| GTTGGAGAGTGATCCTATAG+GGG | + | chr2.4:61891864-61891883 | MS.gene02900:intron | 45.0% | |
| TACTCAAGTTCCTGGAGACA+AGG | + | chr2.4:61892426-61892445 | MS.gene02900:CDS | 45.0% | |
| TTCAGAACTCTCCAAGAACG+CGG | + | chr2.4:61889710-61889729 | MS.gene02900:CDS | 45.0% | |
| ! | ATGGAGAAAGCACAAGAGCA+AGG | + | chr2.4:61891526-61891545 | MS.gene02900:CDS | 45.0% |
| ! | GCTTGTGATCTTTTCCTCTG+AGG | - | chr2.4:61892482-61892501 | None:intergenic | 45.0% |
| ! | GTATCTAACGGCTGATTCAG+AGG | + | chr2.4:61891423-61891442 | MS.gene02900:CDS | 45.0% |
| ! | TTTTCCAATCCCTTGTCTCC+AGG | - | chr2.4:61892439-61892458 | None:intergenic | 45.0% |
| !! | CGAAGTATTGGCAGATCGTA+AGG | + | chr2.4:61891390-61891409 | MS.gene02900:CDS | 45.0% |
| !! | GTTCTTGGAGAGTTCTGAAG+TGG | - | chr2.4:61889709-61889728 | None:intergenic | 45.0% |
| !! | TCTTTGCTGTTATCCCTCAG+AGG | + | chr2.4:61892465-61892484 | MS.gene02900:CDS | 45.0% |
| AACGGAGGAAGAGAGAGTGA+AGG | + | chr2.4:61889860-61889879 | MS.gene02900:CDS | 50.0% | |
| ACTTGTGTTTCCAGCTGCAG+TGG | - | chr2.4:61891765-61891784 | None:intergenic | 50.0% | |
| AGTTCCTGGAGACAAGGGAT+TGG | + | chr2.4:61892432-61892451 | MS.gene02900:CDS | 50.0% | |
| CCACCAAACCGCTATAGTAG+TGG | - | chr2.4:61890595-61890614 | None:intergenic | 50.0% | |
| CCAGTTAGCCAAAGATGTGC+AGG | - | chr2.4:61891286-61891305 | None:intergenic | 50.0% | |
| CCTGCACATCTTTGGCTAAC+TGG | + | chr2.4:61891283-61891302 | MS.gene02900:CDS | 50.0% | |
| CTACTCTCAATGGCACTTCG+CGG | - | chr2.4:61890518-61890537 | None:intergenic | 50.0% | |
| GAAAGCAGAGAAGAAAGCGG+CGG | + | chr2.4:61889770-61889789 | MS.gene02900:CDS | 50.0% | |
| GAGAAAAAATGGAGGGGGGT+TGG | + | chr2.4:61891846-61891865 | MS.gene02900:intron | 50.0% | |
| GAGTGATCCTATAGGGGATC+CGG | + | chr2.4:61891870-61891889 | MS.gene02900:intron | 50.0% | |
| GCAACAGTGGCCACTATAAG+TGG | + | chr2.4:61890540-61890559 | MS.gene02900:intron | 50.0% | |
| GGGTTGGAGAGTGATCCTAT+AGG | + | chr2.4:61891862-61891881 | MS.gene02900:intron | 50.0% | |
| GTCAGGCAAAGCAAAGGACT+TGG | + | chr2.4:61890823-61890842 | MS.gene02900:intron | 50.0% | |
| GTGAAACCCCTGCACATCTT+TGG | + | chr2.4:61891275-61891294 | MS.gene02900:CDS | 50.0% | |
| TACTCTCAATGGCACTTCGC+GGG | - | chr2.4:61890517-61890536 | None:intergenic | 50.0% | |
| TAGCTTCTTCTCCGCGTTCT+TGG | - | chr2.4:61889724-61889743 | None:intergenic | 50.0% | |
| TATAGGGGATCCGGATCCAT+CGG | + | chr2.4:61891879-61891898 | MS.gene02900:intron | 50.0% | |
| ! | AACAGTGGATTCGGGTTCGT+GGG | - | chr2.4:61889673-61889692 | None:intergenic | 50.0% |
| ! | AAGTATAGCGGGGATAACGG+AGG | + | chr2.4:61889845-61889864 | MS.gene02900:CDS | 50.0% |
| ! | CCACTACTATAGCGGTTTGG+TGG | + | chr2.4:61890592-61890611 | MS.gene02900:intron | 50.0% |
| !! | AGTTCTGAAGTGGGTTGTGG+TGG | - | chr2.4:61889699-61889718 | None:intergenic | 50.0% |
| !! | GAGAGTTCTGAAGTGGGTTG+TGG | - | chr2.4:61889702-61889721 | None:intergenic | 50.0% |
| !! | GTTGAAGAGCGGTGCTATCA+AGG | + | chr2.4:61890562-61890581 | MS.gene02900:intron | 50.0% |
| !! | TGGTGGTGGAACAGTGGATT+CGG | - | chr2.4:61889682-61889701 | None:intergenic | 50.0% |
| AACTGGCTGCGAAGGAGAGA+TGG | + | chr2.4:61891300-61891319 | MS.gene02900:CDS | 55.0% | |
| CTTTGGCTAACTGGCTGCGA+AGG | + | chr2.4:61891292-61891311 | MS.gene02900:CDS | 55.0% | |
| GATGGATCCGGATCCCCTAT+AGG | - | chr2.4:61891880-61891899 | None:intergenic | 55.0% | |
| GGCGAAGGAGCAGAAGAAGA+AGG | + | chr2.4:61889791-61889810 | MS.gene02900:CDS | 55.0% | |
| ! | GAACAGTGGATTCGGGTTCG+TGG | - | chr2.4:61889674-61889693 | None:intergenic | 55.0% |
| !! | GGTGGTGGAACAGTGGATTC+GGG | - | chr2.4:61889681-61889700 | None:intergenic | 55.0% |
| !! | TCTGAAGTGGGTTGTGGTGG+TGG | - | chr2.4:61889696-61889715 | None:intergenic | 55.0% |
| AATGGCACTTCGCGGGACCA+TGG | - | chr2.4:61890510-61890529 | None:intergenic | 60.0% | |
| AGAGAAGAAAGCGGCGGCGA+AGG | + | chr2.4:61889776-61889795 | MS.gene02900:CDS | 60.0% | |
| GGACCATGGCGTAGTAGTGG+AGG | - | chr2.4:61890496-61890515 | None:intergenic | 60.0% | |
| ! | GTGGATTCGGGTTCGTGGGT+TGG | - | chr2.4:61889669-61889688 | None:intergenic | 60.0% |
| !! | GGAAGTGCTTCCACTGCAGC+TGG | + | chr2.4:61891752-61891771 | MS.gene02900:intron | 60.0% |
| !! | GGGTTGTGGTGGTGGAACAG+TGG | - | chr2.4:61889688-61889707 | None:intergenic | 60.0% |
| CGGCCTCCACTACTACGCCA+TGG | + | chr2.4:61890490-61890509 | MS.gene02900:intron | 65.0% | |
| GCGGGACCATGGCGTAGTAG+TGG | - | chr2.4:61890499-61890518 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 61889660 | 61892649 | 61889660 | ID=MS.gene02900 |
| chr2.4 | mRNA | 61889660 | 61892649 | 61889660 | ID=MS.gene02900.t1;Parent=MS.gene02900 |
| chr2.4 | exon | 61889660 | 61890055 | 61889660 | ID=MS.gene02900.t1.exon1;Parent=MS.gene02900.t1 |
| chr2.4 | CDS | 61889660 | 61890055 | 61889660 | ID=cds.MS.gene02900.t1;Parent=MS.gene02900.t1 |
| chr2.4 | exon | 61891244 | 61891603 | 61891244 | ID=MS.gene02900.t1.exon2;Parent=MS.gene02900.t1 |
| chr2.4 | CDS | 61891244 | 61891603 | 61891244 | ID=cds.MS.gene02900.t1;Parent=MS.gene02900.t1 |
| chr2.4 | exon | 61892395 | 61892649 | 61892395 | ID=MS.gene02900.t1.exon3;Parent=MS.gene02900.t1 |
| chr2.4 | CDS | 61892395 | 61892649 | 61892395 | ID=cds.MS.gene02900.t1;Parent=MS.gene02900.t1 |
| Gene Sequence |
| Protein sequence |
