Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029279.t1 | RHN82564.1 | 97.7 | 388 | 9 | 0 | 210 | 597 | 61 | 448 | 1.20E-211 | 746.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029279.t1 | Q5RC80 | 42.2 | 393 | 187 | 9 | 215 | 596 | 149 | 512 | 1.7e-68 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029279.t1 | A0A396JZD2 | 97.7 | 388 | 9 | 0 | 210 | 597 | 61 | 448 | 9.0e-212 | 746.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54070 | MS.gene029279 | PPI |
| MS.gene015893 | MS.gene029279 | PPI |
| MS.gene09281 | MS.gene029279 | PPI |
| MS.gene08963 | MS.gene029279 | PPI |
| MS.gene023498 | MS.gene029279 | PPI |
| MS.gene08808 | MS.gene029279 | PPI |
| MS.gene021573 | MS.gene029279 | PPI |
| MS.gene86296 | MS.gene029279 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029279.t1 | MTR_8g092550 | 51.485 | 606 | 209 | 16 | 34 | 595 | 1 | 565 | 0.0 | 529 |
| MS.gene029279.t1 | MTR_3g095230 | 64.428 | 402 | 130 | 7 | 195 | 593 | 192 | 583 | 5.40e-178 | 516 |
| MS.gene029279.t1 | MTR_3g095230 | 64.885 | 393 | 125 | 7 | 195 | 584 | 192 | 574 | 6.96e-175 | 508 |
| MS.gene029279.t1 | MTR_7g094660 | 23.265 | 245 | 169 | 7 | 205 | 441 | 626 | 859 | 1.48e-12 | 71.2 |
| MS.gene029279.t1 | MTR_6g040190 | 30.464 | 151 | 87 | 3 | 230 | 379 | 36 | 169 | 6.11e-12 | 68.9 |
| MS.gene029279.t1 | MTR_7g096260 | 23.673 | 245 | 167 | 8 | 205 | 441 | 485 | 717 | 1.60e-11 | 67.8 |
| MS.gene029279.t1 | MTR_7g096260 | 23.673 | 245 | 167 | 8 | 205 | 441 | 471 | 703 | 1.67e-11 | 67.8 |
| MS.gene029279.t1 | MTR_1g020080 | 28.333 | 180 | 119 | 6 | 220 | 396 | 191 | 363 | 2.25e-11 | 66.6 |
| MS.gene029279.t1 | MTR_1g019150 | 25.146 | 171 | 110 | 2 | 210 | 379 | 23 | 176 | 4.26e-11 | 66.2 |
| MS.gene029279.t1 | MTR_4g085540 | 26.036 | 169 | 106 | 3 | 220 | 386 | 35 | 186 | 4.29e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029279.t1 | AT2G16940 | 53.662 | 628 | 207 | 14 | 34 | 597 | 1 | 608 | 0.0 | 538 |
| MS.gene029279.t1 | AT2G16940 | 55.385 | 585 | 214 | 11 | 34 | 597 | 1 | 559 | 0.0 | 538 |
| MS.gene029279.t1 | AT2G16940 | 54.443 | 619 | 205 | 15 | 34 | 597 | 1 | 597 | 0.0 | 535 |
| MS.gene029279.t1 | AT2G16940 | 68.949 | 409 | 108 | 6 | 198 | 597 | 20 | 418 | 0.0 | 526 |
| MS.gene029279.t1 | AT2G16940 | 68.949 | 409 | 108 | 6 | 198 | 597 | 20 | 418 | 0.0 | 526 |
| MS.gene029279.t1 | AT5G09880 | 52.228 | 561 | 225 | 11 | 34 | 590 | 1 | 522 | 2.27e-167 | 487 |
| MS.gene029279.t1 | AT4G27000 | 30.435 | 184 | 120 | 4 | 215 | 396 | 169 | 346 | 3.44e-14 | 75.5 |
| MS.gene029279.t1 | AT1G48920 | 29.609 | 179 | 114 | 6 | 219 | 390 | 297 | 470 | 7.33e-14 | 75.1 |
| MS.gene029279.t1 | AT5G54900 | 26.562 | 192 | 134 | 4 | 207 | 396 | 142 | 328 | 1.68e-13 | 73.2 |
| MS.gene029279.t1 | AT4G34110 | 28.994 | 169 | 101 | 3 | 220 | 386 | 37 | 188 | 6.56e-13 | 72.0 |
| MS.gene029279.t1 | AT4G19610 | 24.123 | 228 | 156 | 5 | 211 | 431 | 593 | 810 | 2.33e-12 | 70.5 |
| MS.gene029279.t1 | AT1G11650 | 25.140 | 179 | 127 | 3 | 220 | 396 | 156 | 329 | 6.61e-11 | 65.1 |
| MS.gene029279.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 209 | 370 | 2 | 167 | 7.95e-11 | 65.1 |
| MS.gene029279.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 209 | 370 | 5 | 170 | 8.01e-11 | 65.1 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATTTAGGCCCTTATTC+TGG | 0.109164 | 1.4:-86699147 | MS.gene029279:CDS |
| AATGATCACCGCAAGCTTTA+TGG | 0.144465 | 1.4:-86694568 | MS.gene029279:intron |
| CAGCGAAGCAAAAGCATTTC+TGG | 0.156469 | 1.4:-86703996 | MS.gene029279:CDS |
| AATGAAATATTCGAATTAAT+TGG | 0.166060 | 1.4:+86704399 | None:intergenic |
| AAGAACTGTGTTTGCTTATC+AGG | 0.185609 | 1.4:-86701064 | MS.gene029279:intron |
| ACAGTTCTTTGATCTCTTTC+AGG | 0.242899 | 1.4:+86701078 | None:intergenic |
| GCGAGATGTTCGGTTGATTA+TGG | 0.243482 | 1.4:-86700449 | MS.gene029279:CDS |
| CCAAGAACTCATTTGCTATC+TGG | 0.245886 | 1.4:+86694420 | None:intergenic |
| TTCCCATTGCTTGTAGATTA+AGG | 0.251379 | 1.4:+86695091 | None:intergenic |
| CCACTTATTGGAATTGGAAT+TGG | 0.287615 | 1.4:+86704612 | None:intergenic |
| CTTTCAGGTCAACCTCTTCT+TGG | 0.289755 | 1.4:-86699249 | MS.gene029279:CDS |
| TTGCAGTATGGTTGGTTTGC+TGG | 0.290107 | 1.4:-86695139 | MS.gene029279:intron |
| GGAATCGATCCTCGTATAAC+TGG | 0.293028 | 1.4:+86694442 | None:intergenic |
| GAAGCAGAATGCTCCAAGTT+TGG | 0.294926 | 1.4:-86694792 | MS.gene029279:CDS |
| ATTGGGCATTGCAAAGGTTT+TGG | 0.296396 | 1.4:-86698746 | MS.gene029279:CDS |
| CCCATGGCAATAGCGCTTTC+AGG | 0.304225 | 1.4:-86699264 | MS.gene029279:CDS |
| GAAATTTAGGCCCTTATTCT+GGG | 0.320135 | 1.4:-86699146 | MS.gene029279:CDS |
| AGGAATGGCAAGGGACTTAA+AGG | 0.323597 | 1.4:-86703913 | MS.gene029279:CDS |
| GGTTCAACATAGAAGTTCTA+AGG | 0.324971 | 1.4:-86704153 | MS.gene029279:CDS |
| TCTGTTGCTAACGGGCCTTC+TGG | 0.328512 | 1.4:-86699168 | MS.gene029279:CDS |
| CCACCTGGCATTCCAACTCC+TGG | 0.330402 | 1.4:+86695039 | None:intergenic |
| CAGACGGCATAAAGAGAAAA+AGG | 0.339356 | 1.4:-86701127 | MS.gene029279:CDS |
| GTTTAGGTGTTTGAAGCATT+TGG | 0.350751 | 1.4:-86698803 | MS.gene029279:intron |
| TCGTTACCACTTATTGGAAT+TGG | 0.361057 | 1.4:+86704606 | None:intergenic |
| GAAGGAACCAGACTTTGATT+TGG | 0.363169 | 1.4:-86694832 | MS.gene029279:CDS |
| AAGCAGAATGCTCCAAGTTT+GGG | 0.375980 | 1.4:-86694791 | MS.gene029279:CDS |
| CAAGAATTCGGCGGAAATAC+TGG | 0.377273 | 1.4:-86696447 | MS.gene029279:CDS |
| GAAAGAGATAGAAGGAATCA+AGG | 0.379739 | 1.4:-86704050 | MS.gene029279:CDS |
| AACGGGCCTTCTGGAAATTT+AGG | 0.380199 | 1.4:-86699159 | MS.gene029279:CDS |
| AAGATCAGCTTCAGTAATAC+TGG | 0.384484 | 1.4:+86699089 | None:intergenic |
| GTTCTTCTCGTCGTCGTTCA+CGG | 0.386174 | 1.4:-86704199 | MS.gene029279:CDS |
| CTGTGCACTTATTGCAGATT+GGG | 0.394110 | 1.4:+86694623 | None:intergenic |
| TTAACATCCAAATCAAAGTC+TGG | 0.396360 | 1.4:+86694825 | None:intergenic |
| CAAGAACTCATTTGCTATCT+GGG | 0.400356 | 1.4:+86694421 | None:intergenic |
| TCCGATGGCTTCACCATCAC+TGG | 0.400948 | 1.4:+86699222 | None:intergenic |
| TTACATGGAAGATGGTTTGC+AGG | 0.407022 | 1.4:-86694594 | MS.gene029279:CDS |
| TGCTCGGGAAGAGGCATTCA+AGG | 0.409408 | 1.4:+86695272 | None:intergenic |
| GTTAAAGAATATGTTTGATC+CGG | 0.411016 | 1.4:-86694947 | MS.gene029279:CDS |
| TGCAGTATGGTTGGTTTGCT+GGG | 0.416126 | 1.4:-86695138 | MS.gene029279:intron |
| TTGAATAGCCAGTTGGAGAT+TGG | 0.425004 | 1.4:-86697983 | MS.gene029279:CDS |
| AGTGGTAACGAAAAGGCATT+AGG | 0.427560 | 1.4:-86704594 | MS.gene029279:intron |
| CACCTGGCATTCCAACTCCT+GGG | 0.427701 | 1.4:+86695040 | None:intergenic |
| ATTGGAATTGGAATTGGAAT+CGG | 0.428470 | 1.4:+86704618 | None:intergenic |
| ATGGGGATAGGAAGAGAGAC+AGG | 0.428494 | 1.4:-86704127 | MS.gene029279:CDS |
| ATAGAAGTTCTAAGGGCAAT+GGG | 0.429828 | 1.4:-86704145 | MS.gene029279:CDS |
| CCAATTCCAATTCCAATAAG+TGG | 0.430072 | 1.4:-86704612 | MS.gene029279:CDS |
| ACGGTGAAGAGAAGCATAGA+AGG | 0.435659 | 1.4:-86704097 | MS.gene029279:CDS |
| TCTCTTTCAGGATCAATCTC+AGG | 0.446666 | 1.4:+86701090 | None:intergenic |
| ACCCCAGGAGTTGGAATGCC+AGG | 0.447356 | 1.4:-86695042 | MS.gene029279:CDS |
| GTAAATAGAGATAGAGAAAG+AGG | 0.447784 | 1.4:-86703933 | MS.gene029279:CDS |
| TTCTATCTCTTTCAACATCC+CGG | 0.447920 | 1.4:+86704060 | None:intergenic |
| CAATGTCATCAAGAGGCATC+TGG | 0.449507 | 1.4:+86698765 | None:intergenic |
| ATTTCCAGGTGCGAGATGTT+CGG | 0.451143 | 1.4:-86700459 | MS.gene029279:intron |
| TCAAGACGTTCTAAAGGTGT+TGG | 0.457560 | 1.4:-86700418 | MS.gene029279:CDS |
| AGATGCCTCTTGATGACATT+GGG | 0.460702 | 1.4:-86698763 | MS.gene029279:CDS |
| TCCTCCCACCAATCTCCAAC+TGG | 0.461997 | 1.4:+86697975 | None:intergenic |
| AATTCTGTTGTCAACAATAC+AGG | 0.465091 | 1.4:-86695114 | MS.gene029279:CDS |
| ATAGAGAGATGAGTCGTGAC+AGG | 0.465228 | 1.4:-86703956 | MS.gene029279:CDS |
| GACTTGTCAGCATTTGAACT+TGG | 0.465269 | 1.4:+86695010 | None:intergenic |
| TCCAATAAGTGGTAACGAAA+AGG | 0.466270 | 1.4:-86704601 | MS.gene029279:CDS |
| GCTGTGCACTTATTGCAGAT+TGG | 0.469463 | 1.4:+86694622 | None:intergenic |
| TGCAAACCATCTTCCATGTA+AGG | 0.469787 | 1.4:+86694596 | None:intergenic |
| CAATCTGGAATGCAAGAATT+CGG | 0.473861 | 1.4:-86696459 | MS.gene029279:CDS |
| CAAGACGTTCTAAAGGTGTT+GGG | 0.475156 | 1.4:-86700417 | MS.gene029279:intron |
| CTTATTCCCACCCCAGGAGT+TGG | 0.477168 | 1.4:-86695051 | MS.gene029279:CDS |
| TCAGCTGTTACTGATCAATC+TGG | 0.478932 | 1.4:-86696474 | MS.gene029279:CDS |
| CTACAGCATCTGTTGCTAAC+GGG | 0.479490 | 1.4:-86699176 | MS.gene029279:CDS |
| ATGATGATGATGTTGATCAT+TGG | 0.482649 | 1.4:-86704247 | MS.gene029279:CDS |
| GGCCTTAATCTACAAGCAAT+GGG | 0.483020 | 1.4:-86695093 | MS.gene029279:CDS |
| AGCATTACTCATGCAGAAGT+TGG | 0.485791 | 1.4:-86695253 | MS.gene029279:CDS |
| AAATCTTAAGTAGACAAATC+CGG | 0.486003 | 1.4:+86694653 | None:intergenic |
| ATCGGAAGCAGAAAAGAATC+TGG | 0.487315 | 1.4:-86699205 | MS.gene029279:CDS |
| GCGCCGATTGTATCAATAGT+AGG | 0.495158 | 1.4:+86694988 | None:intergenic |
| AGTGCACAGCGGGCCTTACA+TGG | 0.497162 | 1.4:-86694609 | MS.gene029279:CDS |
| CATGAGTAATGCTCGGGAAG+AGG | 0.500452 | 1.4:+86695263 | None:intergenic |
| ATCTGCAATAAGTGCACAGC+GGG | 0.503256 | 1.4:-86694619 | MS.gene029279:CDS |
| TATGAGTTCTTCTCAAGGGC+TGG | 0.503681 | 1.4:-86700924 | MS.gene029279:CDS |
| ACCTGAAAGCGCTATTGCCA+TGG | 0.505680 | 1.4:+86699263 | None:intergenic |
| CAAAATTCTGAACCTAAGAA+TGG | 0.508101 | 1.4:-86704326 | MS.gene029279:CDS |
| AGGAACCAGATAGAGAAAAC+AGG | 0.508947 | 1.4:-86703893 | MS.gene029279:intron |
| AGGCCTTAATCTACAAGCAA+TGG | 0.510829 | 1.4:-86695094 | MS.gene029279:CDS |
| GTTCTAAGGGCAATGGGGAT+AGG | 0.513112 | 1.4:-86704139 | MS.gene029279:CDS |
| TTCACAGATTTCTCTTAAAG+CGG | 0.516431 | 1.4:-86700961 | MS.gene029279:intron |
| AATAGCCAGTTGGAGATTGG+TGG | 0.519548 | 1.4:-86697980 | MS.gene029279:CDS |
| AGCGGGCCTTACATGGAAGA+TGG | 0.519802 | 1.4:-86694602 | MS.gene029279:CDS |
| AAAGAGATAGAAGGAATCAA+GGG | 0.520589 | 1.4:-86704049 | MS.gene029279:CDS |
| ATTTCATTGTTCAACTGCGA+TGG | 0.520752 | 1.4:-86704384 | MS.gene029279:CDS |
| TGGCATTCCAACTCCTGGGG+TGG | 0.521399 | 1.4:+86695044 | None:intergenic |
| GAAGGGAGAGAGACAGAGAC+CGG | 0.523936 | 1.4:-86704079 | MS.gene029279:CDS |
| TCTGTGAGCAGGAGGAGTGC+CGG | 0.524448 | 1.4:-86694672 | MS.gene029279:intron |
| TGATGATGAAGGTGGTGGAT+TGG | 0.525562 | 1.4:-86696415 | MS.gene029279:intron |
| CCTGAAAGCGCTATTGCCAT+GGG | 0.527636 | 1.4:+86699264 | None:intergenic |
| AAATTTAGGCCCTTATTCTG+GGG | 0.528621 | 1.4:-86699145 | MS.gene029279:CDS |
| TTTAACAATAAGCATTCACT+TGG | 0.530647 | 1.4:+86694964 | None:intergenic |
| CGCAATTCAAGACGTTCTAA+AGG | 0.532669 | 1.4:-86700424 | MS.gene029279:CDS |
| AGTCCTACTATTGATACAAT+CGG | 0.537828 | 1.4:-86694991 | MS.gene029279:CDS |
| CATAGAAGTTCTAAGGGCAA+TGG | 0.539953 | 1.4:-86704146 | MS.gene029279:CDS |
| GAATCGATCCTCGTATAACT+GGG | 0.541805 | 1.4:+86694443 | None:intergenic |
| GGGATGTTGAAAGAGATAGA+AGG | 0.542287 | 1.4:-86704058 | MS.gene029279:CDS |
| GATGACATTGGGCATTGCAA+AGG | 0.544112 | 1.4:-86698752 | MS.gene029279:CDS |
| TATGTTTGATCCGGAAAATG+AGG | 0.544620 | 1.4:-86694938 | MS.gene029279:intron |
| GAGTGAGAGTGAACGAGAGA+AGG | 0.545249 | 1.4:-86704027 | MS.gene029279:CDS |
| ACTTCTGCATGAGTAATGCT+CGG | 0.546350 | 1.4:+86695256 | None:intergenic |
| AATTTAGGCCCTTATTCTGG+GGG | 0.547956 | 1.4:-86699144 | MS.gene029279:CDS |
| TAGAGATAGAGAAAGAGGAA+TGG | 0.552230 | 1.4:-86703928 | MS.gene029279:CDS |
| GTTCTTCTCAAGGGCTGGCA+AGG | 0.552502 | 1.4:-86700919 | MS.gene029279:intron |
| GGAGTTGGAATGCCAGGTGG+AGG | 0.553313 | 1.4:-86695036 | MS.gene029279:CDS |
| GGCATTCCAACTCCTGGGGT+GGG | 0.554138 | 1.4:+86695045 | None:intergenic |
| CGTCGTTCACGGTCTAGAGA+TGG | 0.557047 | 1.4:-86704188 | MS.gene029279:CDS |
| TTACTGAAGCTGATCTTCGT+AGG | 0.557966 | 1.4:-86699083 | MS.gene029279:CDS |
| TCTTCTTGGTCAACCAGTGA+TGG | 0.558447 | 1.4:-86699235 | MS.gene029279:CDS |
| CGATGTCATGTCTGTCCCCA+TGG | 0.560163 | 1.4:-86699280 | MS.gene029279:CDS |
| CAGATGCCTCTTGATGACAT+TGG | 0.560834 | 1.4:-86698764 | MS.gene029279:CDS |
| AAGCATTCAAAATCTAGAGA+TGG | 0.565325 | 1.4:-86704221 | MS.gene029279:CDS |
| GTAGCTCTTATTCCCACCCC+AGG | 0.569618 | 1.4:-86695057 | MS.gene029279:CDS |
| GTTCAACATAGAAGTTCTAA+GGG | 0.570581 | 1.4:-86704152 | MS.gene029279:CDS |
| CTTCTGCATGAGTAATGCTC+GGG | 0.570793 | 1.4:+86695257 | None:intergenic |
| CTTTAGAACGTCTTGAATTG+CGG | 0.570798 | 1.4:+86700425 | None:intergenic |
| ATCGCAGTGGCATTGCATCA+AGG | 0.573059 | 1.4:-86695230 | MS.gene029279:intron |
| TACTGAAGCTGATCTTCGTA+GGG | 0.577585 | 1.4:-86699082 | MS.gene029279:intron |
| CGTTTATGAGTTCTTCTCAA+GGG | 0.577829 | 1.4:-86700928 | MS.gene029279:CDS |
| GATTGGTGGGAGGACAATCA+AGG | 0.581844 | 1.4:-86697966 | MS.gene029279:intron |
| ACCTGGCATTCCAACTCCTG+GGG | 0.582546 | 1.4:+86695041 | None:intergenic |
| TGAACTTGGAGACCTCCACC+TGG | 0.583833 | 1.4:+86695024 | None:intergenic |
| TCTACAGCATCTGTTGCTAA+CGG | 0.585181 | 1.4:-86699177 | MS.gene029279:CDS |
| ATTGATGATGATGAAGGTGG+TGG | 0.588755 | 1.4:-86696420 | MS.gene029279:CDS |
| CAATGCCCAATGTCATCAAG+AGG | 0.592641 | 1.4:+86698758 | None:intergenic |
| TAGAGATGGAGACAAGGAGA+AGG | 0.593241 | 1.4:-86704174 | MS.gene029279:CDS |
| ACCAGTGATGGTGAAGCCAT+CGG | 0.593462 | 1.4:-86699223 | MS.gene029279:CDS |
| AGTTCATAGTCGAAACTCAA+AGG | 0.593538 | 1.4:-86704273 | MS.gene029279:CDS |
| ATAGCCAGTTGGAGATTGGT+GGG | 0.598010 | 1.4:-86697979 | MS.gene029279:CDS |
| TTCTGAACCTAAGAATGGTG+TGG | 0.599396 | 1.4:-86704321 | MS.gene029279:CDS |
| CGGTGAAGAGAAGCATAGAA+GGG | 0.604123 | 1.4:-86704096 | MS.gene029279:CDS |
| GGTGCAAGAAGGCTCTATGT+TGG | 0.610158 | 1.4:-86699123 | MS.gene029279:CDS |
| TAGAGAGATGAGTCGTGACA+GGG | 0.610522 | 1.4:-86703955 | MS.gene029279:CDS |
| ACGTTTATGAGTTCTTCTCA+AGG | 0.612320 | 1.4:-86700929 | MS.gene029279:CDS |
| TAGAGAAAGAGGAATGGCAA+GGG | 0.614110 | 1.4:-86703922 | MS.gene029279:CDS |
| GGTGATATTGATGATGATGA+AGG | 0.615807 | 1.4:-86696426 | MS.gene029279:CDS |
| ATAGAGAAAGAGGAATGGCA+AGG | 0.620234 | 1.4:-86703923 | MS.gene029279:CDS |
| GTGGGAATAAGAGCTACTGC+TGG | 0.624602 | 1.4:+86695063 | None:intergenic |
| AAGAGAGACAGGGATAGAGA+CGG | 0.630880 | 1.4:-86704116 | MS.gene029279:CDS |
| ATCACTGGTTGACCAAGAAG+AGG | 0.635615 | 1.4:+86699237 | None:intergenic |
| AAGGGAGAGAGACAGAGACC+GGG | 0.638082 | 1.4:-86704078 | MS.gene029279:CDS |
| TAAGGGCCTAAATTTCCAGA+AGG | 0.648555 | 1.4:+86699153 | None:intergenic |
| GAAGCAAAAGCATTTCTGGA+AGG | 0.650865 | 1.4:-86703992 | MS.gene029279:CDS |
| TCAGAGCTTGAATAGCCAGT+TGG | 0.660361 | 1.4:-86697990 | MS.gene029279:CDS |
| CCAGGAGTTGGAATGCCAGG+TGG | 0.674750 | 1.4:-86695039 | MS.gene029279:CDS |
| ACGGTCTAGAGATGGAGACA+AGG | 0.676875 | 1.4:-86704180 | MS.gene029279:CDS |
| GATATTGATGATGATGAAGG+TGG | 0.683755 | 1.4:-86696423 | MS.gene029279:CDS |
| GCCAGTTGGAGATTGGTGGG+AGG | 0.684582 | 1.4:-86697976 | MS.gene029279:CDS |
| TCTGGAATGCAAGAATTCGG+CGG | 0.689367 | 1.4:-86696456 | MS.gene029279:CDS |
| ATGCAGAAGTTGGATCGCAG+TGG | 0.693345 | 1.4:-86695243 | MS.gene029279:CDS |
| TAGAAGTTCTAAGGGCAATG+GGG | 0.702855 | 1.4:-86704144 | MS.gene029279:CDS |
| TATGTGTACCATAAAGCTTG+CGG | 0.707127 | 1.4:+86694560 | None:intergenic |
| AATCGATCCTCGTATAACTG+GGG | 0.710279 | 1.4:+86694444 | None:intergenic |
| TGGGGATAGGAAGAGAGACA+GGG | 0.717842 | 1.4:-86704126 | MS.gene029279:CDS |
| CTGAAAGCGCTATTGCCATG+GGG | 0.726318 | 1.4:+86699265 | None:intergenic |
| GTAGGTTCCCCAGTTATACG+AGG | 0.752635 | 1.4:-86694451 | MS.gene029279:intron |
| AATCTGCAATAAGTGCACAG+CGG | 0.813207 | 1.4:-86694620 | MS.gene029279:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86694428 | 86704652 | 86694428 | ID=MS.gene029279 |
| chr1.4 | mRNA | 86694428 | 86704652 | 86694428 | ID=MS.gene029279.t1;Parent=MS.gene029279 |
| chr1.4 | exon | 86704595 | 86704652 | 86704595 | ID=MS.gene029279.t1.exon1;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86704595 | 86704652 | 86704595 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86703894 | 86704428 | 86703894 | ID=MS.gene029279.t1.exon2;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86703894 | 86704428 | 86703894 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86701065 | 86701146 | 86701065 | ID=MS.gene029279.t1.exon3;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86701065 | 86701146 | 86701065 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86700920 | 86700976 | 86700920 | ID=MS.gene029279.t1.exon4;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86700920 | 86700976 | 86700920 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86700418 | 86700473 | 86700418 | ID=MS.gene029279.t1.exon5;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86700418 | 86700473 | 86700418 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86699083 | 86699317 | 86699083 | ID=MS.gene029279.t1.exon6;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86699083 | 86699317 | 86699083 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86698736 | 86698819 | 86698736 | ID=MS.gene029279.t1.exon7;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86698736 | 86698819 | 86698736 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86697967 | 86698041 | 86697967 | ID=MS.gene029279.t1.exon8;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86697967 | 86698041 | 86697967 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86696416 | 86696499 | 86696416 | ID=MS.gene029279.t1.exon9;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86696416 | 86696499 | 86696416 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86695231 | 86695295 | 86695231 | ID=MS.gene029279.t1.exon10;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86695231 | 86695295 | 86695231 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86694939 | 86695155 | 86694939 | ID=MS.gene029279.t1.exon11;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86694939 | 86695155 | 86694939 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86694765 | 86694853 | 86694765 | ID=MS.gene029279.t1.exon12;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86694765 | 86694853 | 86694765 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86694569 | 86694683 | 86694569 | ID=MS.gene029279.t1.exon13;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86694569 | 86694683 | 86694569 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| chr1.4 | exon | 86694428 | 86694469 | 86694428 | ID=MS.gene029279.t1.exon14;Parent=MS.gene029279.t1 |
| chr1.4 | CDS | 86694428 | 86694469 | 86694428 | ID=cds.MS.gene029279.t1;Parent=MS.gene029279.t1 |
| Gene Sequence |
| Protein sequence |
