AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029400.t1 MTR_1g110930 99.395 496 3 0 1 496 1 496 0.0 1022
MS.gene029400.t1 MTR_5g056510 88.710 496 56 0 1 496 1 496 0.0 922
MS.gene029400.t1 MTR_4g070270 66.667 486 162 0 5 490 17 502 0.0 697
MS.gene029400.t1 MTR_2g054940 63.340 491 179 1 4 493 18 508 0.0 654
MS.gene029400.t1 MTR_1g041085 62.880 493 182 1 5 496 26 518 0.0 649
MS.gene029400.t1 MTR_1g076430 61.460 493 189 1 5 496 20 512 0.0 644
MS.gene029400.t1 MTR_7g081695 61.649 485 173 2 4 487 18 490 0.0 615
MS.gene029400.t1 MTR_4g113280 58.656 491 189 3 5 493 8 486 0.0 611
MS.gene029400.t1 MTR_7g118170 58.233 498 196 5 5 491 33 529 0.0 592
MS.gene029400.t1 MTR_3g105550 55.311 499 210 5 5 490 38 536 0.0 577
MS.gene029400.t1 MTR_2g007020 55.366 410 179 3 84 491 45 452 9.01e-172 492
MS.gene029400.t1 MTR_2g436480 52.009 423 199 3 71 490 30 451 6.35e-162 466
MS.gene029400.t1 MTR_6g074880 52.796 447 205 4 49 492 27 470 2.82e-161 466
MS.gene029400.t1 MTR_4g054415 53.756 426 191 4 68 490 3 425 3.78e-161 464
MS.gene029400.t1 MTR_4g054630 53.756 426 191 4 68 490 44 466 3.81e-161 465
MS.gene029400.t1 MTR_2g013740 50.207 482 227 4 3 481 31 502 3.87e-161 466
MS.gene029400.t1 MTR_7g118160 53.041 411 148 3 83 490 51 419 4.72e-156 451
MS.gene029400.t1 MTR_1g102290 51.225 408 197 2 83 488 77 484 1.48e-153 446
MS.gene029400.t1 MTR_6g032965 54.692 373 168 1 120 491 13 385 1.49e-151 438
MS.gene029400.t1 MTR_3g072940 51.456 412 195 5 80 488 74 483 5.09e-150 437
MS.gene029400.t1 MTR_3g072980 51.456 412 195 5 80 488 74 483 5.14e-150 437
MS.gene029400.t1 MTR_6g051440 50.245 408 200 3 83 488 76 482 1.77e-137 405
MS.gene029400.t1 MTR_1g115560 39.394 429 230 7 84 487 28 451 9.73e-110 334
MS.gene029400.t1 MTR_4g062270 38.799 433 256 5 61 487 4 433 1.30e-108 331
MS.gene029400.t1 MTR_2g096210 40.359 446 246 8 61 489 4 446 4.32e-108 330
MS.gene029400.t1 MTR_4g062190 37.613 444 255 6 61 487 4 442 1.13e-104 321
MS.gene029400.t1 MTR_4g062170 38.776 441 253 6 61 487 4 441 1.47e-104 320
MS.gene029400.t1 MTR_4g054260 51.362 257 104 4 237 490 87 325 1.48e-81 256
MS.gene029400.t1 MTR_4g053905 57.500 160 65 2 333 490 1 159 1.43e-58 191
MS.gene029400.t1 MTR_4g054265 37.288 118 72 1 68 185 3 118 3.63e-18 80.9
MS.gene029400.t1 MTR_7g086260 62.903 62 21 1 328 387 22 83 9.42e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029400.t1 AT1G68530 85.163 492 73 0 5 496 6 497 0.0 903
MS.gene029400.t1 AT1G25450 82.520 492 86 0 5 496 1 492 0.0 880
MS.gene029400.t1 AT2G16280 65.432 486 168 0 5 490 25 510 0.0 691
MS.gene029400.t1 AT1G19440 64.124 485 174 0 4 488 28 512 0.0 690
MS.gene029400.t1 AT2G26640 59.388 490 198 1 5 493 17 506 0.0 621
MS.gene029400.t1 AT4G34510 61.134 476 179 2 16 490 15 485 0.0 619
MS.gene029400.t1 AT1G68530 82.267 344 61 0 5 348 6 349 0.0 610
MS.gene029400.t1 AT1G04220 58.149 497 198 5 5 492 22 517 0.0 598
MS.gene029400.t1 AT5G43760 59.553 492 190 4 11 494 34 524 0.0 589
MS.gene029400.t1 AT1G01120 57.258 496 203 4 5 492 34 528 0.0 585
MS.gene029400.t1 AT2G26250 53.696 514 204 6 5 488 39 548 0.0 565
MS.gene029400.t1 AT4G34520 52.990 485 217 2 17 490 6 490 0.0 541
MS.gene029400.t1 AT2G15090 54.487 468 202 4 33 490 13 479 0.0 540
MS.gene029400.t1 AT4G34250 52.174 483 225 1 14 490 5 487 0.0 540
MS.gene029400.t1 AT2G46720 53.976 415 188 1 79 490 51 465 3.26e-176 503
MS.gene029400.t1 AT3G10280 52.530 415 187 2 79 490 51 458 3.33e-168 483
MS.gene029400.t1 AT1G71160 51.059 425 206 2 65 488 23 446 2.86e-164 473
MS.gene029400.t1 AT5G49070 53.186 408 187 2 88 492 51 457 1.19e-154 448
MS.gene029400.t1 AT3G52160 41.458 480 233 4 2 480 18 450 8.44e-130 385
MS.gene029400.t1 AT3G52160 47.514 362 158 2 120 480 7 337 5.29e-120 355
MS.gene029400.t1 AT2G28630 41.135 423 227 8 84 487 27 446 3.00e-108 330
MS.gene029400.t1 AT2G28630 41.135 423 227 8 84 487 27 446 3.00e-108 330
MS.gene029400.t1 AT5G04530 40.334 419 235 6 79 487 24 437 9.42e-108 328
MS.gene029400.t1 AT1G07720 39.623 424 233 6 84 487 27 447 1.53e-104 321
MS.gene029400.t1 AT1G07720 39.623 424 233 6 84 487 70 490 2.44e-104 322
MS.gene029400.t1 AT5G49070 50.570 263 130 0 88 350 51 313 3.80e-89 276

Find 84 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAAAGTTTCAATCTTTC+TGG 0.065209 1.4:-84593236 MS.gene029400:CDS
GGAATATATGGTTTCCATTT+AGG 0.109972 1.4:+84592762 None:intergenic
ACAACAACAGCGTTTGAATT+TGG 0.177083 1.4:+84593152 None:intergenic
GACTAGAGTTTAACAATTTC+AGG 0.193877 1.4:+84592405 None:intergenic
CCCATTCTGAACAAACAATT+TGG 0.235185 1.4:+84593071 None:intergenic
ATGAGTATGTCTATGTCTTT+TGG 0.254903 1.4:+84593335 None:intergenic
GAATATATGGTTTCCATTTA+GGG 0.289900 1.4:+84592763 None:intergenic
GCTGATTCCATGGTTGGTTT+TGG 0.301961 1.4:+84593425 None:intergenic
TGTTTAAAATCAGGAATATA+TGG 0.307224 1.4:+84592750 None:intergenic
ATTCTTGAACGTTCTGGTCT+TGG 0.333327 1.4:-84593488 MS.gene029400:CDS
ACCAAATTGTTTGTTCAGAA+TGG 0.334078 1.4:-84593072 MS.gene029400:CDS
CCTCTTGCTGATTCCATGGT+TGG 0.334706 1.4:+84593419 None:intergenic
CAAATGAAATCCTCAATCTT+TGG 0.335858 1.4:-84593730 MS.gene029400:CDS
GAAGACAAAGAAGGTAAAGT+TGG 0.337284 1.4:-84592924 MS.gene029400:CDS
TCATTTCCTTGGTAATAGTT+TGG 0.338601 1.4:+84593110 None:intergenic
TAATGTGATTAACAAGATAT+TGG 0.344044 1.4:+84593813 None:intergenic
TCAAAAGCTTGTTTAAAATC+AGG 0.344766 1.4:+84592741 None:intergenic
ATGAGGATTCTTGAACGTTC+TGG 0.346354 1.4:-84593494 MS.gene029400:CDS
CAAAGATTGAGGATTTCATT+TGG 0.354032 1.4:+84593731 None:intergenic
TTAAATGCAATAGTGCTGTT+TGG 0.358909 1.4:-84592503 MS.gene029400:CDS
ACAATTTCAGGAATATGAAC+TGG 0.365101 1.4:+84592417 None:intergenic
CATCAAGGATGACACTTCAT+AGG 0.375420 1.4:-84592635 MS.gene029400:CDS
GCATGGCTCTTTCATTTCCT+TGG 0.383297 1.4:+84593099 None:intergenic
CTAGAGAAATCAGGCAAGAT+TGG 0.383386 1.4:+84593869 None:intergenic
AGTTTCAATCTTTCTGGAAT+GGG 0.384158 1.4:-84593230 MS.gene029400:CDS
GCCTAAACGTATTAATTCAA+TGG 0.385102 1.4:+84593754 None:intergenic
AAAGATTGAGGATTTCATTT+GGG 0.396180 1.4:+84593732 None:intergenic
AAAGATCTTATGGCAATTGC+AGG 0.402261 1.4:-84592888 MS.gene029400:CDS
ACTCTTATTCCAATCATGAT+TGG 0.405667 1.4:-84593782 MS.gene029400:CDS
GTAGGATGAAGAAAGGAGAC+AGG 0.407017 1.4:-84592554 MS.gene029400:CDS
CCAAATTGTTTGTTCAGAAT+GGG 0.412558 1.4:-84593071 MS.gene029400:CDS
TTCACCTCTTGCTGATTCCA+TGG 0.414626 1.4:+84593415 None:intergenic
TCTGGAATGGGGTGTAGTGC+TGG 0.419176 1.4:-84593218 MS.gene029400:CDS
TCCATTGAATTAATACGTTT+AGG 0.420370 1.4:-84593755 MS.gene029400:CDS
AACACCTTCTTTGTCTGCTA+TGG 0.422563 1.4:-84593288 MS.gene029400:CDS
AAGTTTCAATCTTTCTGGAA+TGG 0.430041 1.4:-84593231 MS.gene029400:CDS
AAAGGGACACGACATGTAAC+AGG 0.437710 1.4:+84593581 None:intergenic
AGGATGACACTTCATAGGTT+TGG 0.439246 1.4:-84592630 MS.gene029400:CDS
AGGGTATGGCAGATAGCATT+TGG 0.440079 1.4:-84592534 MS.gene029400:CDS
ATGGAAACACCAATCATGAT+TGG 0.444520 1.4:+84593773 None:intergenic
TCTGTCCAAGGTCCATCAAT+AGG 0.447705 1.4:+84592456 None:intergenic
TTAACTGAGCTAGAGAAATC+AGG 0.455875 1.4:+84593860 None:intergenic
TTTGAAGAAGAAGACAAAGA+AGG 0.458785 1.4:-84592933 MS.gene029400:CDS
AGCATTAAGACACCTATTGA+TGG 0.461657 1.4:-84592468 MS.gene029400:CDS
ATACATCTTCATCATCACTA+TGG 0.462472 1.4:-84592605 MS.gene029400:CDS
TGTTCCATGAAAGTAGCAAA+AGG 0.467222 1.4:+84593563 None:intergenic
AAATCAAATATAACAACAAT+GGG 0.469834 1.4:-84592855 MS.gene029400:CDS
AAAAGTAACTGTTCTGAAGC+TGG 0.486547 1.4:+84592819 None:intergenic
TCAAAAGGTAGGATGAAGAA+AGG 0.488474 1.4:-84592561 MS.gene029400:CDS
CATGTTGTTAGAACACATAA+AGG 0.489283 1.4:-84592984 MS.gene029400:CDS
CTTAACTACATTGAATCAAA+AGG 0.489774 1.4:-84592576 MS.gene029400:CDS
GGTGGAATATAATGAATTGA+AGG 0.501040 1.4:+84593446 None:intergenic
AAGCTCAAATATGTCAAACT+TGG 0.506709 1.4:-84593839 MS.gene029400:CDS
TGAAGAAAGGAGACAGGGTA+TGG 0.518624 1.4:-84592548 MS.gene029400:CDS
AGACACCTATTGATGGACCT+TGG 0.526960 1.4:-84592461 MS.gene029400:CDS
TAAATCAAATATAACAACAA+TGG 0.543034 1.4:-84592856 MS.gene029400:CDS
GTTTCAATCTTTCTGGAATG+GGG 0.553526 1.4:-84593229 MS.gene029400:CDS
GAGAAATCAGGCAAGATTGG+AGG 0.557615 1.4:+84593872 None:intergenic
GTTCCATGAAAGTAGCAAAA+GGG 0.562961 1.4:+84593564 None:intergenic
CAATTTCAGGAATATGAACT+GGG 0.566319 1.4:+84592418 None:intergenic
TTAGTGAGTTCCAAAGATTG+AGG 0.567302 1.4:+84593720 None:intergenic
CTGAACATGTGGAAGCATCA+AGG 0.570082 1.4:-84592650 MS.gene029400:CDS
TATTCCACCAAAACCAACCA+TGG 0.572625 1.4:-84593432 MS.gene029400:CDS
TCAATTATCTACTGAACATG+TGG 0.575418 1.4:-84592661 MS.gene029400:CDS
TGGCAGATAGCATTTGGCAG+TGG 0.575630 1.4:-84592528 MS.gene029400:CDS
TAGGATGAAGAAAGGAGACA+GGG 0.587174 1.4:-84592553 MS.gene029400:CDS
AAAGTGTCGAGTTTCAAATG+AGG 0.587795 1.4:-84593511 MS.gene029400:CDS
ATAGCAGACAAAGAAGGTGT+TGG 0.589581 1.4:+84593290 None:intergenic
CGATCAATGCAATCTGTCCA+AGG 0.590590 1.4:+84592444 None:intergenic
ACTACATTGAATCAAAAGGT+AGG 0.596604 1.4:-84592572 MS.gene029400:CDS
CAAACAATTTGGTAAAAGCA+TGG 0.599779 1.4:+84593082 None:intergenic
ATAACACCAAACTATTACCA+AGG 0.604070 1.4:-84593116 MS.gene029400:CDS
ATCACCATAGCAGACAAAGA+AGG 0.607711 1.4:+84593284 None:intergenic
CATGATTGGAATAAGAGTGA+GGG 0.624584 1.4:+84593787 None:intergenic
TCTGAAGCTGGTAAAACAAG+AGG 0.631454 1.4:+84592831 None:intergenic
TCATGATTGGAATAAGAGTG+AGG 0.639155 1.4:+84593786 None:intergenic
TCAACGAGGTAGATTGTGCG+TGG 0.640912 1.4:+84593623 None:intergenic
GGAATATAATGAATTGAAGG+TGG 0.644085 1.4:+84593449 None:intergenic
AATTGTTTGTTCAGAATGGG+TGG 0.644773 1.4:-84593068 MS.gene029400:CDS
AAGAACATAGAATTTGAACA+AGG 0.652634 1.4:+84593690 None:intergenic
GTTGTTAGAACACATAAAGG+AGG 0.674114 1.4:-84592981 MS.gene029400:CDS
CCAACCATGGAATCAGCAAG+AGG 0.689762 1.4:-84593419 MS.gene029400:CDS
GGGACACGACATGTAACAGG+TGG 0.708255 1.4:+84593584 None:intergenic
TGAAACAAGCATAGTCAACG+AGG 0.745187 1.4:+84593609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATATAACAACAAT+GGG - chr1.4:84593427-84593446 MS.gene029400:CDS 15.0%
!! TAAATCAAATATAACAACAA+TGG - chr1.4:84593426-84593445 MS.gene029400:CDS 15.0%
!! TAATGTGATTAACAAGATAT+TGG + chr1.4:84592472-84592491 None:intergenic 20.0%
!!! TGTTTAAAATCAGGAATATA+TGG + chr1.4:84593535-84593554 None:intergenic 20.0%
! AAAGATTGAGGATTTCATTT+GGG + chr1.4:84592553-84592572 None:intergenic 25.0%
! AAGAACATAGAATTTGAACA+AGG + chr1.4:84592595-84592614 None:intergenic 25.0%
! ATCAAAAGTTTCAATCTTTC+TGG - chr1.4:84593046-84593065 MS.gene029400:CDS 25.0%
! ATCACTTCAAAAAGATCTTA+TGG - chr1.4:84593384-84593403 MS.gene029400:CDS 25.0%
! CTTAACTACATTGAATCAAA+AGG - chr1.4:84593706-84593725 MS.gene029400:CDS 25.0%
! GAATATATGGTTTCCATTTA+GGG + chr1.4:84593522-84593541 None:intergenic 25.0%
! TCCATTGAATTAATACGTTT+AGG - chr1.4:84592527-84592546 MS.gene029400:CDS 25.0%
!! GATTCTTTGTTTGAAAAAAC+CGG - chr1.4:84592917-84592936 MS.gene029400:CDS 25.0%
!! TCAAAAGCTTGTTTAAAATC+AGG + chr1.4:84593544-84593563 None:intergenic 25.0%
!! TTTTGACATGAAATAAACAG+TGG + chr1.4:84592639-84592658 None:intergenic 25.0%
!!! CACTTTTTGGATTGTTTTTA+AGG + chr1.4:84592757-84592776 None:intergenic 25.0%
!!! TTTTTCAAACAAAGAATCCA+TGG + chr1.4:84592915-84592934 None:intergenic 25.0%
AAGCTCAAATATGTCAAACT+TGG - chr1.4:84592443-84592462 MS.gene029400:CDS 30.0%
ACAATTTCAGGAATATGAAC+TGG + chr1.4:84593868-84593887 None:intergenic 30.0%
ACCAAATTGTTTGTTCAGAA+TGG - chr1.4:84593210-84593229 MS.gene029400:CDS 30.0%
ACTACATTGAATCAAAAGGT+AGG - chr1.4:84593710-84593729 MS.gene029400:CDS 30.0%
ACTCTTATTCCAATCATGAT+TGG - chr1.4:84592500-84592519 MS.gene029400:CDS 30.0%
ATAACACCAAACTATTACCA+AGG - chr1.4:84593166-84593185 MS.gene029400:CDS 30.0%
ATACATCTTCATCATCACTA+TGG - chr1.4:84593677-84593696 MS.gene029400:CDS 30.0%
CAAACAATTTGGTAAAAGCA+TGG + chr1.4:84593203-84593222 None:intergenic 30.0%
CAAAGATTGAGGATTTCATT+TGG + chr1.4:84592554-84592573 None:intergenic 30.0%
CAAATGAAATCCTCAATCTT+TGG - chr1.4:84592552-84592571 MS.gene029400:CDS 30.0%
CAATTTCAGGAATATGAACT+GGG + chr1.4:84593867-84593886 None:intergenic 30.0%
CATGTTGTTAGAACACATAA+AGG - chr1.4:84593298-84593317 MS.gene029400:CDS 30.0%
CCAAATTGTTTGTTCAGAAT+GGG - chr1.4:84593211-84593230 MS.gene029400:CDS 30.0%
GAAAAATCTTCAACCCTAAA+TGG - chr1.4:84593506-84593525 MS.gene029400:CDS 30.0%
GCCTAAACGTATTAATTCAA+TGG + chr1.4:84592531-84592550 None:intergenic 30.0%
GGAATATAATGAATTGAAGG+TGG + chr1.4:84592836-84592855 None:intergenic 30.0%
GGAATATATGGTTTCCATTT+AGG + chr1.4:84593523-84593542 None:intergenic 30.0%
GGTGGAATATAATGAATTGA+AGG + chr1.4:84592839-84592858 None:intergenic 30.0%
TCAATTATCTACTGAACATG+TGG - chr1.4:84593621-84593640 MS.gene029400:CDS 30.0%
TTTGAAGAAGAAGACAAAGA+AGG - chr1.4:84593349-84593368 MS.gene029400:CDS 30.0%
! AAGTTTCAATCTTTCTGGAA+TGG - chr1.4:84593051-84593070 MS.gene029400:CDS 30.0%
! ATGAGTATGTCTATGTCTTT+TGG + chr1.4:84592950-84592969 None:intergenic 30.0%
! GAACATTTTTGTATACATGC+TGG - chr1.4:84593562-84593581 MS.gene029400:CDS 30.0%
! TCATTTCCTTGGTAATAGTT+TGG + chr1.4:84593175-84593194 None:intergenic 30.0%
! TTAAATGCAATAGTGCTGTT+TGG - chr1.4:84593779-84593798 MS.gene029400:CDS 30.0%
!! AGTTTCAATCTTTCTGGAAT+GGG - chr1.4:84593052-84593071 MS.gene029400:CDS 30.0%
!! ATTTGAAACTCGACACTTTT+TGG + chr1.4:84592770-84592789 None:intergenic 30.0%
!!! TATGTCTTTTGGTTTAAGAC+CGG + chr1.4:84592939-84592958 None:intergenic 30.0%
AAAGATCTTATGGCAATTGC+AGG - chr1.4:84593394-84593413 MS.gene029400:CDS 35.0%
AATTGTTTGTTCAGAATGGG+TGG - chr1.4:84593214-84593233 MS.gene029400:CDS 35.0%
ACAACAACAGCGTTTGAATT+TGG + chr1.4:84593133-84593152 None:intergenic 35.0%
AGCATTAAGACACCTATTGA+TGG - chr1.4:84593814-84593833 MS.gene029400:CDS 35.0%
ATGGAAACACCAATCATGAT+TGG + chr1.4:84592512-84592531 None:intergenic 35.0%
CAGTGGCTATAAAAATGACA+AGG + chr1.4:84592622-84592641 None:intergenic 35.0%
CATGATTGGAATAAGAGTGA+GGG + chr1.4:84592498-84592517 None:intergenic 35.0%
CCCATTCTGAACAAACAATT+TGG + chr1.4:84593214-84593233 None:intergenic 35.0%
GAAGACAAAGAAGGTAAAGT+TGG - chr1.4:84593358-84593377 MS.gene029400:CDS 35.0%
GTTCCATGAAAGTAGCAAAA+GGG + chr1.4:84592721-84592740 None:intergenic 35.0%
GTTGTTAGAACACATAAAGG+AGG - chr1.4:84593301-84593320 MS.gene029400:CDS 35.0%
TCAAAAGGTAGGATGAAGAA+AGG - chr1.4:84593721-84593740 MS.gene029400:CDS 35.0%
TCATGATTGGAATAAGAGTG+AGG + chr1.4:84592499-84592518 None:intergenic 35.0%
TGTTCCATGAAAGTAGCAAA+AGG + chr1.4:84592722-84592741 None:intergenic 35.0%
TTAACTGAGCTAGAGAAATC+AGG + chr1.4:84592425-84592444 None:intergenic 35.0%
TTAGTGAGTTCCAAAGATTG+AGG + chr1.4:84592565-84592584 None:intergenic 35.0%
! CATTTTTGTATACATGCTGG+TGG - chr1.4:84593565-84593584 MS.gene029400:CDS 35.0%
! CTTTTTCTCATCACACTCAT+TGG - chr1.4:84593481-84593500 MS.gene029400:CDS 35.0%
!! AAAAGTAACTGTTCTGAAGC+TGG + chr1.4:84593466-84593485 None:intergenic 35.0%
!! AAAGTGTCGAGTTTCAAATG+AGG - chr1.4:84592771-84592790 MS.gene029400:CDS 35.0%
!! GTTTCAATCTTTCTGGAATG+GGG - chr1.4:84593053-84593072 MS.gene029400:CDS 35.0%
!!! ACTTGTTATTTTCTCAGCCA+TGG - chr1.4:84592895-84592914 MS.gene029400:CDS 35.0%
AACACCTTCTTTGTCTGCTA+TGG - chr1.4:84592994-84593013 MS.gene029400:CDS 40.0%
AGGATGACACTTCATAGGTT+TGG - chr1.4:84593652-84593671 MS.gene029400:CDS 40.0%
ATCACCATAGCAGACAAAGA+AGG + chr1.4:84593001-84593020 None:intergenic 40.0%
ATGAGGATTCTTGAACGTTC+TGG - chr1.4:84592788-84592807 MS.gene029400:CDS 40.0%
ATTCTTGAACGTTCTGGTCT+TGG - chr1.4:84592794-84592813 MS.gene029400:CDS 40.0%
CATCAAGGATGACACTTCAT+AGG - chr1.4:84593647-84593666 MS.gene029400:CDS 40.0%
CTAGAGAAATCAGGCAAGAT+TGG + chr1.4:84592416-84592435 None:intergenic 40.0%
TAGGATGAAGAAAGGAGACA+GGG - chr1.4:84593729-84593748 MS.gene029400:CDS 40.0%
TATTCCACCAAAACCAACCA+TGG - chr1.4:84592850-84592869 MS.gene029400:CDS 40.0%
TGAAACAAGCATAGTCAACG+AGG + chr1.4:84592676-84592695 None:intergenic 40.0%
! ATAGCAGACAAAGAAGGTGT+TGG + chr1.4:84592995-84593014 None:intergenic 40.0%
! TCTGAAGCTGGTAAAACAAG+AGG + chr1.4:84593454-84593473 None:intergenic 40.0%
!!! TGTCCCTTTTGCTACTTTCA+TGG - chr1.4:84592715-84592734 MS.gene029400:CDS 40.0%
AAAGGGACACGACATGTAAC+AGG + chr1.4:84592704-84592723 None:intergenic 45.0%
AGGGTATGGCAGATAGCATT+TGG - chr1.4:84593748-84593767 MS.gene029400:CDS 45.0%
CGATCAATGCAATCTGTCCA+AGG + chr1.4:84593841-84593860 None:intergenic 45.0%
GAGAAATCAGGCAAGATTGG+AGG + chr1.4:84592413-84592432 None:intergenic 45.0%
GCATGGCTCTTTCATTTCCT+TGG + chr1.4:84593186-84593205 None:intergenic 45.0%
GTAGGATGAAGAAAGGAGAC+AGG - chr1.4:84593728-84593747 MS.gene029400:CDS 45.0%
TCTGTCCAAGGTCCATCAAT+AGG + chr1.4:84593829-84593848 None:intergenic 45.0%
TGAAGAAAGGAGACAGGGTA+TGG - chr1.4:84593734-84593753 MS.gene029400:CDS 45.0%
! AGACACCTATTGATGGACCT+TGG - chr1.4:84593821-84593840 MS.gene029400:CDS 45.0%
!! CTGAACATGTGGAAGCATCA+AGG - chr1.4:84593632-84593651 MS.gene029400:CDS 45.0%
!! TTCACCTCTTGCTGATTCCA+TGG + chr1.4:84592870-84592889 None:intergenic 45.0%
!!! GATTCCATGGTTGGTTTTGG+TGG + chr1.4:84592857-84592876 None:intergenic 45.0%
!!! GCTGATTCCATGGTTGGTTT+TGG + chr1.4:84592860-84592879 None:intergenic 45.0%
CCAACCATGGAATCAGCAAG+AGG - chr1.4:84592863-84592882 MS.gene029400:CDS 50.0%
TCAACGAGGTAGATTGTGCG+TGG + chr1.4:84592662-84592681 None:intergenic 50.0%
TGGCAGATAGCATTTGGCAG+TGG - chr1.4:84593754-84593773 MS.gene029400:CDS 50.0%
!! CCTCTTGCTGATTCCATGGT+TGG + chr1.4:84592866-84592885 None:intergenic 50.0%
GGGACACGACATGTAACAGG+TGG + chr1.4:84592701-84592720 None:intergenic 55.0%
! TCTGGAATGGGGTGTAGTGC+TGG - chr1.4:84593064-84593083 MS.gene029400:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 84592407 84593897 84592407 ID=MS.gene029400
chr1.4 mRNA 84592407 84593897 84592407 ID=MS.gene029400.t1;Parent=MS.gene029400
chr1.4 exon 84592407 84593897 84592407 ID=MS.gene029400.t1.exon1;Parent=MS.gene029400.t1
chr1.4 CDS 84592407 84593897 84592407 ID=cds.MS.gene029400.t1;Parent=MS.gene029400.t1
Gene Sequence

>MS.gene029400

ATGCCTCCAATCTTGCCTGATTTCTCTAGCTCAGTTAAGCTCAAATATGTCAAACTTGGTTACCAATATCTTGTTAATCACATTATAACCCTCACTCTTATTCCAATCATGATTGGTGTTTCCATTGAATTAATACGTTTAGGCCCAAATGAAATCCTCAATCTTTGGAACTCACTAAACTTAAACCTTGTTCAAATTCTATGTTCTTCTTTCCTTGTCATTTTTATAGCCACTGTTTATTTCATGTCAAAACCACGCACAATCTACCTCGTTGACTATGCTTGTTTCAAACCACCTGTTACATGTCGTGTCCCTTTTGCTACTTTCATGGAACATTCAAGACTCATCCTTAAAAACAATCCAAAAAGTGTCGAGTTTCAAATGAGGATTCTTGAACGTTCTGGTCTTGGTGAAGAAACATGTTTACCACCTTCAATTCATTATATTCCACCAAAACCAACCATGGAATCAGCAAGAGGTGAAGCTGAACTTGTTATTTTCTCAGCCATGGATTCTTTGTTTGAAAAAACCGGTCTTAAACCAAAAGACATAGACATACTCATAGTAAATTGTAGCTTGTTTTCTCCAACACCTTCTTTGTCTGCTATGGTGATTAACAAATACAAATTAAGAAGCAATATCAAAAGTTTCAATCTTTCTGGAATGGGGTGTAGTGCTGGACTCATTTCGATCGATTTAGCTCGTGATCTTCTTCAAGTTCATCCAAATTCAAACGCTGTTGTTGTTAGCACAGAGATTATAACACCAAACTATTACCAAGGAAATGAAAGAGCCATGCTTTTACCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATTCTGTTATCAAACAGAACATCAGAGAAAAGAAGAGCAAAATACAGATTAGTTCATGTTGTTAGAACACATAAAGGAGGTGATGATAAAGCATATAAATGTGTTTTTGAAGAAGAAGACAAAGAAGGTAAAGTTGGAATATCACTTCAAAAAGATCTTATGGCAATTGCAGGTGAAGCTCTTAAATCAAATATAACAACAATGGGTCCTCTTGTTTTACCAGCTTCAGAACAGTTACTTTTTCTCATCACACTCATTGGTAGAAAAATCTTCAACCCTAAATGGAAACCATATATTCCTGATTTTAAACAAGCTTTTGAACATTTTTGTATACATGCTGGTGGTCGTGCTGTGATTGATGAGTTACAAAAGAATCTTCAATTATCTACTGAACATGTGGAAGCATCAAGGATGACACTTCATAGGTTTGGTAATACATCTTCATCATCACTATGGTATGAACTTAACTACATTGAATCAAAAGGTAGGATGAAGAAAGGAGACAGGGTATGGCAGATAGCATTTGGCAGTGGATTTAAATGCAATAGTGCTGTTTGGAAATGTAACAGAAGCATTAAGACACCTATTGATGGACCTTGGACAGATTGCATTGATCGTTACCCAGTTCATATTCCTGAAATTGTTAAACTCTAG
Protein sequence

>MS.gene029400.t1

MPPILPDFSSSVKLKYVKLGYQYLVNHIITLTLIPIMIGVSIELIRLGPNEILNLWNSLNLNLVQILCSSFLVIFIATVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPSIHYIPPKPTMESARGEAELVIFSAMDSLFEKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAILLSNRTSEKRRAKYRLVHVVRTHKGGDDKAYKCVFEEEDKEGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQLLFLITLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSTEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKKGDRVWQIAFGSGFKCNSAVWKCNRSIKTPIDGPWTDCIDRYPVHIPEIVKL