Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004547.t1 | XP_013463224.1 | 96.4 | 385 | 13 | 1 | 1 | 384 | 68 | 452 | 3.00E-211 | 744.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004547.t1 | Q9FH27 | 59.8 | 376 | 150 | 1 | 9 | 383 | 80 | 455 | 1.2e-128 | 461.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004547.t1 | A0A072V5Y3 | 96.4 | 385 | 13 | 1 | 1 | 384 | 68 | 452 | 2.2e-211 | 744.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene71836 | MS.gene004547 | PPI |
MS.gene004547 | MS.gene029400 | PPI |
MS.gene76300 | MS.gene004547 | PPI |
MS.gene065130 | MS.gene004547 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004547.t1 | MTR_2g436480 | 96.364 | 385 | 13 | 1 | 1 | 384 | 68 | 452 | 0.0 | 775 |
MS.gene004547.t1 | MTR_2g007020 | 54.813 | 374 | 169 | 0 | 10 | 383 | 78 | 451 | 8.49e-155 | 444 |
MS.gene004547.t1 | MTR_4g070270 | 53.600 | 375 | 173 | 1 | 10 | 384 | 130 | 503 | 5.56e-153 | 441 |
MS.gene004547.t1 | MTR_1g110930 | 55.135 | 370 | 165 | 1 | 14 | 383 | 122 | 490 | 4.35e-152 | 439 |
MS.gene004547.t1 | MTR_2g054940 | 54.032 | 372 | 169 | 2 | 13 | 383 | 135 | 505 | 1.38e-149 | 433 |
MS.gene004547.t1 | MTR_5g056510 | 53.784 | 370 | 170 | 1 | 14 | 383 | 122 | 490 | 1.10e-147 | 427 |
MS.gene004547.t1 | MTR_7g118170 | 51.554 | 386 | 181 | 2 | 1 | 383 | 146 | 528 | 1.83e-145 | 423 |
MS.gene004547.t1 | MTR_1g076430 | 53.100 | 371 | 172 | 2 | 14 | 383 | 137 | 506 | 5.58e-144 | 419 |
MS.gene004547.t1 | MTR_1g041085 | 51.882 | 372 | 177 | 2 | 13 | 383 | 142 | 512 | 1.43e-143 | 418 |
MS.gene004547.t1 | MTR_4g054415 | 51.064 | 376 | 181 | 3 | 10 | 383 | 51 | 425 | 3.31e-136 | 395 |
MS.gene004547.t1 | MTR_4g054630 | 51.064 | 376 | 181 | 3 | 10 | 383 | 92 | 466 | 6.68e-136 | 396 |
MS.gene004547.t1 | MTR_7g081695 | 52.304 | 369 | 162 | 3 | 13 | 380 | 135 | 490 | 9.28e-136 | 405 |
MS.gene004547.t1 | MTR_4g113280 | 48.691 | 382 | 183 | 3 | 3 | 383 | 114 | 483 | 2.68e-133 | 390 |
MS.gene004547.t1 | MTR_6g074880 | 49.731 | 372 | 184 | 3 | 14 | 383 | 98 | 468 | 6.11e-130 | 381 |
MS.gene004547.t1 | MTR_3g105550 | 46.475 | 383 | 195 | 3 | 11 | 383 | 154 | 536 | 1.58e-129 | 382 |
MS.gene004547.t1 | MTR_6g032965 | 47.656 | 384 | 199 | 2 | 1 | 383 | 2 | 384 | 4.03e-128 | 374 |
MS.gene004547.t1 | MTR_7g118160 | 45.430 | 372 | 157 | 3 | 13 | 381 | 89 | 417 | 2.28e-117 | 348 |
MS.gene004547.t1 | MTR_2g013740 | 47.765 | 358 | 183 | 1 | 15 | 372 | 147 | 500 | 7.07e-115 | 344 |
MS.gene004547.t1 | MTR_1g102290 | 42.932 | 382 | 217 | 1 | 1 | 381 | 103 | 484 | 7.39e-114 | 341 |
MS.gene004547.t1 | MTR_3g072940 | 42.781 | 374 | 205 | 3 | 12 | 381 | 115 | 483 | 1.46e-106 | 322 |
MS.gene004547.t1 | MTR_3g072980 | 42.781 | 374 | 205 | 3 | 12 | 381 | 115 | 483 | 1.59e-106 | 322 |
MS.gene004547.t1 | MTR_6g051440 | 43.200 | 375 | 204 | 3 | 11 | 381 | 113 | 482 | 2.03e-102 | 311 |
MS.gene004547.t1 | MTR_1g115560 | 37.150 | 393 | 222 | 6 | 14 | 384 | 66 | 455 | 1.51e-93 | 288 |
MS.gene004547.t1 | MTR_4g062170 | 38.933 | 375 | 215 | 4 | 18 | 380 | 69 | 441 | 1.98e-88 | 275 |
MS.gene004547.t1 | MTR_4g062270 | 38.547 | 358 | 214 | 4 | 27 | 380 | 78 | 433 | 2.66e-87 | 272 |
MS.gene004547.t1 | MTR_4g062190 | 38.275 | 371 | 214 | 4 | 27 | 384 | 78 | 446 | 1.18e-86 | 270 |
MS.gene004547.t1 | MTR_2g096210 | 38.587 | 368 | 213 | 5 | 26 | 380 | 77 | 444 | 7.66e-85 | 266 |
MS.gene004547.t1 | MTR_4g054260 | 47.082 | 257 | 116 | 4 | 129 | 383 | 87 | 325 | 4.15e-73 | 231 |
MS.gene004547.t1 | MTR_4g053905 | 53.205 | 156 | 71 | 2 | 229 | 383 | 5 | 159 | 1.30e-53 | 175 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004547.t1 | AT5G49070 | 59.424 | 382 | 153 | 2 | 4 | 383 | 74 | 455 | 2.18e-162 | 464 |
MS.gene004547.t1 | AT1G71160 | 54.717 | 371 | 166 | 2 | 11 | 381 | 78 | 446 | 1.32e-154 | 444 |
MS.gene004547.t1 | AT1G19440 | 52.231 | 381 | 181 | 1 | 3 | 383 | 135 | 514 | 1.41e-150 | 436 |
MS.gene004547.t1 | AT2G16280 | 52.231 | 381 | 181 | 1 | 3 | 383 | 131 | 510 | 1.64e-150 | 435 |
MS.gene004547.t1 | AT1G68530 | 54.570 | 372 | 168 | 1 | 12 | 383 | 121 | 491 | 1.48e-148 | 430 |
MS.gene004547.t1 | AT4G34510 | 52.000 | 375 | 180 | 0 | 9 | 383 | 111 | 485 | 2.71e-148 | 429 |
MS.gene004547.t1 | AT1G25450 | 54.054 | 370 | 169 | 1 | 14 | 383 | 118 | 486 | 1.55e-147 | 427 |
MS.gene004547.t1 | AT1G04220 | 52.381 | 378 | 173 | 2 | 13 | 383 | 138 | 515 | 4.60e-145 | 422 |
MS.gene004547.t1 | AT1G01120 | 50.777 | 386 | 184 | 3 | 1 | 384 | 146 | 527 | 4.93e-144 | 419 |
MS.gene004547.t1 | AT4G34520 | 52.957 | 372 | 175 | 0 | 12 | 383 | 119 | 490 | 4.95e-143 | 416 |
MS.gene004547.t1 | AT2G15090 | 52.174 | 368 | 175 | 1 | 16 | 383 | 113 | 479 | 3.17e-140 | 408 |
MS.gene004547.t1 | AT2G26640 | 51.075 | 372 | 180 | 2 | 13 | 383 | 133 | 503 | 4.25e-140 | 409 |
MS.gene004547.t1 | AT5G43760 | 51.724 | 377 | 176 | 2 | 13 | 383 | 144 | 520 | 5.20e-139 | 406 |
MS.gene004547.t1 | AT4G34250 | 53.533 | 368 | 170 | 1 | 16 | 383 | 121 | 487 | 1.44e-138 | 404 |
MS.gene004547.t1 | AT2G46720 | 47.326 | 374 | 193 | 2 | 13 | 383 | 93 | 465 | 2.07e-129 | 380 |
MS.gene004547.t1 | AT2G26250 | 44.612 | 399 | 195 | 3 | 11 | 383 | 152 | 550 | 1.92e-125 | 372 |
MS.gene004547.t1 | AT3G10280 | 45.722 | 374 | 192 | 3 | 13 | 383 | 93 | 458 | 3.54e-122 | 361 |
MS.gene004547.t1 | AT3G52160 | 41.737 | 357 | 176 | 1 | 10 | 366 | 5 | 329 | 7.87e-100 | 300 |
MS.gene004547.t1 | AT3G52160 | 41.737 | 357 | 176 | 1 | 10 | 366 | 118 | 442 | 3.24e-98 | 300 |
MS.gene004547.t1 | AT5G04530 | 37.968 | 374 | 222 | 5 | 14 | 380 | 67 | 437 | 7.74e-89 | 276 |
MS.gene004547.t1 | AT2G28630 | 38.649 | 370 | 212 | 4 | 26 | 380 | 77 | 446 | 9.30e-88 | 273 |
MS.gene004547.t1 | AT2G28630 | 38.649 | 370 | 212 | 4 | 26 | 380 | 77 | 446 | 9.30e-88 | 273 |
MS.gene004547.t1 | AT5G49070 | 55.000 | 240 | 107 | 1 | 4 | 242 | 74 | 313 | 5.31e-87 | 266 |
MS.gene004547.t1 | AT1G07720 | 38.275 | 371 | 213 | 4 | 26 | 380 | 77 | 447 | 1.22e-84 | 265 |
MS.gene004547.t1 | AT1G07720 | 38.275 | 371 | 213 | 4 | 26 | 380 | 120 | 490 | 3.28e-84 | 266 |
MS.gene004547.t1 | AT1G68530 | 46.964 | 247 | 131 | 0 | 12 | 258 | 121 | 367 | 9.80e-80 | 249 |
Find 67 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTACAATGTCAATGGATTT+TGG | 0.096070 | 2.1:+56922140 | None:intergenic |
ACACTTCATCTTCTTCAATT+TGG | 0.201274 | 2.1:-56921407 | MS.gene004547:CDS |
GAACAATTTCTTTGATGATA+TGG | 0.213706 | 2.1:-56922345 | MS.gene004547:CDS |
CAGAGACACTTAGTTTAAAT+TGG | 0.224425 | 2.1:-56921929 | MS.gene004547:CDS |
AAAATGACTCTTTACAGATT+TGG | 0.254477 | 2.1:-56921432 | MS.gene004547:CDS |
TGTCTCTGTGCTTACTATTA+AGG | 0.298816 | 2.1:+56921944 | None:intergenic |
CTCCATGCAGTGGTGGTATC+AGG | 0.320864 | 2.1:+56921261 | None:intergenic |
TATATACTCCGAAATTCAAT+AGG | 0.341407 | 2.1:-56921551 | MS.gene004547:CDS |
AGTAAAATCAGTTCAAAATC+TGG | 0.354540 | 2.1:-56922299 | MS.gene004547:CDS |
GAGCATTTCTGCATACATTC+AGG | 0.356056 | 2.1:-56921522 | MS.gene004547:CDS |
GATACACCTTCTTTGTTCTC+TGG | 0.360781 | 2.1:+56921723 | None:intergenic |
GGAGGATGAAATGTGGAGAT+AGG | 0.368579 | 2.1:-56921356 | MS.gene004547:CDS |
CAATTATTTATCACAAACTT+TGG | 0.375010 | 2.1:-56921593 | MS.gene004547:CDS |
TCAAAAGCCCTATTGAATTT+CGG | 0.378839 | 2.1:+56921543 | None:intergenic |
CAATTAGTTAGTAGCATAGA+TGG | 0.381534 | 2.1:+56921891 | None:intergenic |
TTTGTTCACAAAATATCTAC+TGG | 0.404600 | 2.1:+56921219 | None:intergenic |
TATTGCTTCATTTGGACCAT+TGG | 0.405954 | 2.1:-56921652 | MS.gene004547:CDS |
AGGGTGTGGCAAATTGCCTT+TGG | 0.429711 | 2.1:-56921336 | MS.gene004547:CDS |
GAGAGTTCATAGAAACTCAT+TGG | 0.433105 | 2.1:-56921967 | MS.gene004547:CDS |
AATAGTTATTACAATGTCAA+TGG | 0.436399 | 2.1:+56922133 | None:intergenic |
CTTTGGAGTAGAAGCAGAAC+AGG | 0.443730 | 2.1:-56921576 | MS.gene004547:CDS |
TTGTCATACATTGAAGCAAA+AGG | 0.443838 | 2.1:-56921378 | MS.gene004547:CDS |
TGTTCTCTGGATCCACATCC+TGG | 0.445731 | 2.1:+56921736 | None:intergenic |
TCAGGTATGGGATGCAGTGC+TGG | 0.454944 | 2.1:-56922023 | MS.gene004547:CDS |
AAATAATTGAAACTACATAT+AGG | 0.455610 | 2.1:+56921607 | None:intergenic |
AAGAACATAGTCAATGTTTG+TGG | 0.465324 | 2.1:-56921693 | MS.gene004547:CDS |
TGGCAAATTGCCTTTGGAAG+TGG | 0.480304 | 2.1:-56921330 | MS.gene004547:CDS |
GGTATTTGAGCAAGAGATGG+AGG | 0.484546 | 2.1:+56922254 | None:intergenic |
AACTAATTGTCTATTCAGAA+TGG | 0.491949 | 2.1:-56921877 | MS.gene004547:CDS |
ACTAATTGTCTATTCAGAAT+GGG | 0.500707 | 2.1:-56921876 | MS.gene004547:CDS |
TTGAGCAAGAGATGGAGGAA+TGG | 0.503984 | 2.1:+56922259 | None:intergenic |
CAGCTATACTGATGTCAAGC+AGG | 0.507167 | 2.1:-56921848 | MS.gene004547:CDS |
TTCAGCTTCTTCAAGTGCAA+AGG | 0.509111 | 2.1:+56922214 | None:intergenic |
TACACCATCTCTTAGTTCCA+TGG | 0.525469 | 2.1:-56922093 | MS.gene004547:CDS |
ATATACTCCGAAATTCAATA+GGG | 0.526608 | 2.1:-56921550 | MS.gene004547:CDS |
GAGGATGAAATGTGGAGATA+GGG | 0.530767 | 2.1:-56921355 | MS.gene004547:CDS |
TGTCATACATTGAAGCAAAA+GGG | 0.545212 | 2.1:-56921377 | MS.gene004547:CDS |
TCTGCATACATTCAGGAGGA+AGG | 0.545735 | 2.1:-56921515 | MS.gene004547:CDS |
ATCTTATGCATGTGTATACC+AGG | 0.549386 | 2.1:-56921754 | MS.gene004547:CDS |
CTTAGTTTAAATTGGTACAC+AGG | 0.549728 | 2.1:-56921921 | MS.gene004547:CDS |
AAATTTGAGGCTAAGGAGAG+AGG | 0.552342 | 2.1:-56921469 | MS.gene004547:CDS |
TTAGGTATTTGAGCAAGAGA+TGG | 0.558061 | 2.1:+56922251 | None:intergenic |
CTGCATACATTCAGGAGGAA+GGG | 0.561658 | 2.1:-56921514 | MS.gene004547:CDS |
GAAATTGTTCTCTTCAAACA+TGG | 0.565653 | 2.1:+56922358 | None:intergenic |
CAGGGTTCAAGATAAGCATA+AGG | 0.567212 | 2.1:-56921829 | MS.gene004547:CDS |
TCCCTCCATGGTAAAACCAA+TGG | 0.586685 | 2.1:+56921636 | None:intergenic |
TATAGGAATTGCTCCCTCCA+TGG | 0.589740 | 2.1:+56921624 | None:intergenic |
GTGGATCCAGAGAACAAAGA+AGG | 0.591217 | 2.1:-56921729 | MS.gene004547:CDS |
TGCATGTGTATACCAGGATG+TGG | 0.592850 | 2.1:-56921748 | MS.gene004547:CDS |
GCAAAAGGGAGGATGAAATG+TGG | 0.596598 | 2.1:-56921363 | MS.gene004547:CDS |
ACACTTGAATCCACTTCCAA+AGG | 0.597288 | 2.1:+56921320 | None:intergenic |
CTTGAACTTGTTAACCACCA+TGG | 0.598240 | 2.1:+56922076 | None:intergenic |
TTGTTCACAAAATATCTACT+GGG | 0.608606 | 2.1:+56921220 | None:intergenic |
TGAAATGTGGAGATAGGGTG+TGG | 0.627356 | 2.1:-56921350 | MS.gene004547:CDS |
AGCCTGATACCACCACTGCA+TGG | 0.631353 | 2.1:-56921263 | MS.gene004547:CDS |
AGCTATACTGATGTCAAGCA+GGG | 0.634456 | 2.1:-56921847 | MS.gene004547:CDS |
AGTGCAGTGTGGAAATGTCT+AGG | 0.641145 | 2.1:-56921294 | MS.gene004547:CDS |
AATTGTCTATTCAGAATGGG+AGG | 0.650566 | 2.1:-56921873 | MS.gene004547:CDS |
AGTGCTGGAATTATAGCTGT+TGG | 0.651328 | 2.1:-56922008 | MS.gene004547:CDS |
CATTTCTGCATACATTCAGG+AGG | 0.654916 | 2.1:-56921519 | MS.gene004547:CDS |
AATAGTATCTCTCCATGCAG+TGG | 0.658821 | 2.1:+56921251 | None:intergenic |
ACCACCATGGAACTAAGAGA+TGG | 0.659654 | 2.1:+56922089 | None:intergenic |
AGTATCTCTCCATGCAGTGG+TGG | 0.668618 | 2.1:+56921254 | None:intergenic |
ACCATCTCTTAGTTCCATGG+TGG | 0.692156 | 2.1:-56922090 | MS.gene004547:CDS |
CATACATTGAAGCAAAAGGG+AGG | 0.699331 | 2.1:-56921374 | MS.gene004547:CDS |
ATGGAACTAAGAGATGGTGT+AGG | 0.699337 | 2.1:+56922095 | None:intergenic |
TCAAGTGTAACAGTGCAGTG+TGG | 0.713371 | 2.1:-56921305 | MS.gene004547:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATTGAAACTACATAT+AGG | + | chr2.1:56921976-56921995 | None:intergenic | 15.0% |
!! | AAGAAAAATATTGCTTCATT+TGG | - | chr2.1:56921920-56921939 | MS.gene004547:CDS | 20.0% |
!! | AATAGTTATTACAATGTCAA+TGG | + | chr2.1:56921450-56921469 | None:intergenic | 20.0% |
!! | CAATTATTTATCACAAACTT+TGG | - | chr2.1:56921987-56922006 | MS.gene004547:CDS | 20.0% |
!!! | ATTTTGAACTGATTTTACTT+TGG | + | chr2.1:56921280-56921299 | None:intergenic | 20.0% |
!!! | TGATTTTGGTTTTTTGTAAA+AGG | + | chr2.1:56921418-56921437 | None:intergenic | 20.0% |
! | AAAATGACTCTTTACAGATT+TGG | - | chr2.1:56922148-56922167 | MS.gene004547:CDS | 25.0% |
! | AACTAATTGTCTATTCAGAA+TGG | - | chr2.1:56921703-56921722 | MS.gene004547:CDS | 25.0% |
! | ACTAATTGTCTATTCAGAAT+GGG | - | chr2.1:56921704-56921723 | MS.gene004547:CDS | 25.0% |
! | AGTAAAATCAGTTCAAAATC+TGG | - | chr2.1:56921281-56921300 | MS.gene004547:CDS | 25.0% |
! | ATATACTCCGAAATTCAATA+GGG | - | chr2.1:56922030-56922049 | MS.gene004547:CDS | 25.0% |
! | TATATACTCCGAAATTCAAT+AGG | - | chr2.1:56922029-56922048 | MS.gene004547:CDS | 25.0% |
!! | GAACAATTTCTTTGATGATA+TGG | - | chr2.1:56921235-56921254 | MS.gene004547:CDS | 25.0% |
!!! | ATTACAATGTCAATGGATTT+TGG | + | chr2.1:56921443-56921462 | None:intergenic | 25.0% |
!!! | TTACAATGTCAATGGATTTT+GGG | + | chr2.1:56921442-56921461 | None:intergenic | 25.0% |
AAGAACATAGTCAATGTTTG+TGG | - | chr2.1:56921887-56921906 | MS.gene004547:CDS | 30.0% | |
AAGCCATTGAGAAAAATTTG+AGG | - | chr2.1:56922098-56922117 | MS.gene004547:CDS | 30.0% | |
ACACTTCATCTTCTTCAATT+TGG | - | chr2.1:56922173-56922192 | MS.gene004547:CDS | 30.0% | |
CAATTAGTTAGTAGCATAGA+TGG | + | chr2.1:56921692-56921711 | None:intergenic | 30.0% | |
CAGAGACACTTAGTTTAAAT+TGG | - | chr2.1:56921651-56921670 | MS.gene004547:CDS | 30.0% | |
CTTAGTTTAAATTGGTACAC+AGG | - | chr2.1:56921659-56921678 | MS.gene004547:CDS | 30.0% | |
TCAAAAGCCCTATTGAATTT+CGG | + | chr2.1:56922040-56922059 | None:intergenic | 30.0% | |
TGTCATACATTGAAGCAAAA+GGG | - | chr2.1:56922203-56922222 | MS.gene004547:CDS | 30.0% | |
TTGTCATACATTGAAGCAAA+AGG | - | chr2.1:56922202-56922221 | MS.gene004547:CDS | 30.0% | |
! | AGTTTTCATCTATCAGGTAT+GGG | - | chr2.1:56921545-56921564 | MS.gene004547:CDS | 30.0% |
! | TAGCCTCAAATTTTTCTCAA+TGG | + | chr2.1:56922104-56922123 | None:intergenic | 30.0% |
! | TTGAGAAAAATTTGAGGCTA+AGG | - | chr2.1:56922104-56922123 | MS.gene004547:CDS | 30.0% |
!!! | AATGGATTTTGGGTTGATTT+TGG | + | chr2.1:56921432-56921451 | None:intergenic | 30.0% |
!!! | CTGTAAAGAGTCATTTTTGA+TGG | + | chr2.1:56922145-56922164 | None:intergenic | 30.0% |
AATTGTCTATTCAGAATGGG+AGG | - | chr2.1:56921707-56921726 | MS.gene004547:CDS | 35.0% | |
ATCTTATGCATGTGTATACC+AGG | - | chr2.1:56921826-56921845 | MS.gene004547:CDS | 35.0% | |
GAGAGTTCATAGAAACTCAT+TGG | - | chr2.1:56921613-56921632 | MS.gene004547:CDS | 35.0% | |
TATTGCTTCATTTGGACCAT+TGG | - | chr2.1:56921928-56921947 | MS.gene004547:CDS | 35.0% | |
TGTCTCTGTGCTTACTATTA+AGG | + | chr2.1:56921639-56921658 | None:intergenic | 35.0% | |
TTAGGTATTTGAGCAAGAGA+TGG | + | chr2.1:56921332-56921351 | None:intergenic | 35.0% | |
! | GAGTTTTCATCTATCAGGTA+TGG | - | chr2.1:56921544-56921563 | MS.gene004547:CDS | 35.0% |
! | GTCATGAGTTTTCATCTATC+AGG | - | chr2.1:56921539-56921558 | MS.gene004547:CDS | 35.0% |
!! | AAGGTGAGAGCTTTACTTTT+AGG | + | chr2.1:56921350-56921369 | None:intergenic | 35.0% |
AATAGTATCTCTCCATGCAG+TGG | + | chr2.1:56922332-56922351 | None:intergenic | 40.0% | |
ACACTTGAATCCACTTCCAA+AGG | + | chr2.1:56922263-56922282 | None:intergenic | 40.0% | |
AGCTATACTGATGTCAAGCA+GGG | - | chr2.1:56921733-56921752 | MS.gene004547:CDS | 40.0% | |
ATGGAACTAAGAGATGGTGT+AGG | + | chr2.1:56921488-56921507 | None:intergenic | 40.0% | |
CAGGGTTCAAGATAAGCATA+AGG | - | chr2.1:56921751-56921770 | MS.gene004547:CDS | 40.0% | |
CATACATTGAAGCAAAAGGG+AGG | - | chr2.1:56922206-56922225 | MS.gene004547:CDS | 40.0% | |
CATTTCTGCATACATTCAGG+AGG | - | chr2.1:56922061-56922080 | MS.gene004547:CDS | 40.0% | |
GAGCATTTCTGCATACATTC+AGG | - | chr2.1:56922058-56922077 | MS.gene004547:CDS | 40.0% | |
GAGGATGAAATGTGGAGATA+GGG | - | chr2.1:56922225-56922244 | MS.gene004547:CDS | 40.0% | |
GATACACCTTCTTTGTTCTC+TGG | + | chr2.1:56921860-56921879 | None:intergenic | 40.0% | |
TACACCATCTCTTAGTTCCA+TGG | - | chr2.1:56921487-56921506 | MS.gene004547:CDS | 40.0% | |
TTCAGCTTCTTCAAGTGCAA+AGG | + | chr2.1:56921369-56921388 | None:intergenic | 40.0% | |
! | AAATTTGAGGCTAAGGAGAG+AGG | - | chr2.1:56922111-56922130 | MS.gene004547:CDS | 40.0% |
! | AGTGCTGGAATTATAGCTGT+TGG | - | chr2.1:56921572-56921591 | MS.gene004547:CDS | 40.0% |
!! | CTTGAACTTGTTAACCACCA+TGG | + | chr2.1:56921507-56921526 | None:intergenic | 40.0% |
!!! | ACCATTGGTTTTACCATGGA+GGG | - | chr2.1:56921943-56921962 | MS.gene004547:CDS | 40.0% |
!!! | TTGGACCATTGGTTTTACCA+TGG | - | chr2.1:56921939-56921958 | MS.gene004547:CDS | 40.0% |
ACCACCATGGAACTAAGAGA+TGG | + | chr2.1:56921494-56921513 | None:intergenic | 45.0% | |
ACCATCTCTTAGTTCCATGG+TGG | - | chr2.1:56921490-56921509 | MS.gene004547:CDS | 45.0% | |
AGTGCAGTGTGGAAATGTCT+AGG | - | chr2.1:56922286-56922305 | MS.gene004547:CDS | 45.0% | |
CAGCTATACTGATGTCAAGC+AGG | - | chr2.1:56921732-56921751 | MS.gene004547:CDS | 45.0% | |
CTGCATACATTCAGGAGGAA+GGG | - | chr2.1:56922066-56922085 | MS.gene004547:CDS | 45.0% | |
GCAAAAGGGAGGATGAAATG+TGG | - | chr2.1:56922217-56922236 | MS.gene004547:CDS | 45.0% | |
GGAGGATGAAATGTGGAGAT+AGG | - | chr2.1:56922224-56922243 | MS.gene004547:CDS | 45.0% | |
GGTATTTGAGCAAGAGATGG+AGG | + | chr2.1:56921329-56921348 | None:intergenic | 45.0% | |
GTGGATCCAGAGAACAAAGA+AGG | - | chr2.1:56921851-56921870 | MS.gene004547:CDS | 45.0% | |
TATAGGAATTGCTCCCTCCA+TGG | + | chr2.1:56921959-56921978 | None:intergenic | 45.0% | |
TCAAGTGTAACAGTGCAGTG+TGG | - | chr2.1:56922275-56922294 | MS.gene004547:CDS | 45.0% | |
TCCCTCCATGGTAAAACCAA+TGG | + | chr2.1:56921947-56921966 | None:intergenic | 45.0% | |
TCTGCATACATTCAGGAGGA+AGG | - | chr2.1:56922065-56922084 | MS.gene004547:CDS | 45.0% | |
TGAAATGTGGAGATAGGGTG+TGG | - | chr2.1:56922230-56922249 | MS.gene004547:CDS | 45.0% | |
TGCATGTGTATACCAGGATG+TGG | - | chr2.1:56921832-56921851 | MS.gene004547:CDS | 45.0% | |
TTGAGCAAGAGATGGAGGAA+TGG | + | chr2.1:56921324-56921343 | None:intergenic | 45.0% | |
! | TGGCAAATTGCCTTTGGAAG+TGG | - | chr2.1:56922250-56922269 | MS.gene004547:CDS | 45.0% |
!! | CTTTGGAGTAGAAGCAGAAC+AGG | - | chr2.1:56922004-56922023 | MS.gene004547:CDS | 45.0% |
!!! | GACCATTGGTTTTACCATGG+AGG | - | chr2.1:56921942-56921961 | MS.gene004547:CDS | 45.0% |
AGGGTGTGGCAAATTGCCTT+TGG | - | chr2.1:56922244-56922263 | MS.gene004547:CDS | 50.0% | |
AGTATCTCTCCATGCAGTGG+TGG | + | chr2.1:56922329-56922348 | None:intergenic | 50.0% | |
TGTTCTCTGGATCCACATCC+TGG | + | chr2.1:56921847-56921866 | None:intergenic | 50.0% | |
AGCCTGATACCACCACTGCA+TGG | - | chr2.1:56922317-56922336 | MS.gene004547:CDS | 55.0% | |
CTCCATGCAGTGGTGGTATC+AGG | + | chr2.1:56922322-56922341 | None:intergenic | 55.0% | |
TCAGGTATGGGATGCAGTGC+TGG | - | chr2.1:56921557-56921576 | MS.gene004547:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 56921224 | 56922378 | 56921224 | ID=MS.gene004547 |
chr2.1 | mRNA | 56921224 | 56922378 | 56921224 | ID=MS.gene004547.t1;Parent=MS.gene004547 |
chr2.1 | exon | 56921224 | 56922378 | 56921224 | ID=MS.gene004547.t1.exon1;Parent=MS.gene004547.t1 |
chr2.1 | CDS | 56921224 | 56922378 | 56921224 | ID=cds.MS.gene004547.t1;Parent=MS.gene004547.t1 |
Gene Sequence |
Protein sequence |