AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029525

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029525.t1 MTR_1g108580 92.105 228 18 0 1 228 1 228 3.67e-159 439
MS.gene029525.t1 MTR_1g108510 86.842 228 30 0 1 228 1 228 5.02e-154 427
MS.gene029525.t1 MTR_2g093190 87.719 228 28 0 1 228 1 228 8.60e-154 426
MS.gene029525.t1 MTR_3g030770 85.965 228 32 0 1 228 1 228 2.09e-151 420
MS.gene029525.t1 MTR_1g105920 76.389 216 43 1 1 208 1 216 5.20e-118 336
MS.gene029525.t1 MTR_8g043650 75.225 222 45 2 1 214 1 220 6.53e-117 333
MS.gene029525.t1 MTR_2g030740 74.074 216 48 1 1 208 1 216 5.63e-115 328
MS.gene029525.t1 MTR_1g105910 71.064 235 50 3 1 227 1 225 1.74e-114 327
MS.gene029525.t1 MTR_1g012570 72.685 216 51 1 1 208 1 216 3.45e-112 321
MS.gene029525.t1 MTR_3g052920 71.759 216 53 1 1 208 1 216 1.80e-109 314
MS.gene029525.t1 MTR_0121s0080 67.234 235 59 3 1 227 1 225 4.64e-107 308
MS.gene029525.t1 MTR_1g075600 63.404 235 68 3 1 227 1 225 6.18e-100 290
MS.gene029525.t1 MTR_1g077360 61.702 235 72 3 1 227 1 225 3.17e-98 286
MS.gene029525.t1 MTR_5g045560 65.022 223 68 2 1 215 1 221 5.25e-98 285
MS.gene029525.t1 MTR_1g105905 65.138 218 58 3 18 227 1 208 2.23e-95 278
MS.gene029525.t1 MTR_2g085250 61.674 227 77 2 1 219 1 225 1.94e-93 273
MS.gene029525.t1 MTR_5g053390 60.426 235 75 3 1 227 1 225 4.41e-93 273
MS.gene029525.t1 MTR_2g085280 60.426 235 75 3 1 227 1 225 5.31e-93 273
MS.gene029525.t1 MTR_3g052870 66.667 216 45 4 1 208 1 197 7.17e-93 271
MS.gene029525.t1 MTR_1g106070 72.527 182 42 1 1 174 1 182 1.38e-90 265
MS.gene029525.t1 MTR_5g055100 58.298 235 80 3 1 227 1 225 1.43e-90 266
MS.gene029525.t1 MTR_7g062350 61.991 221 65 4 16 227 27 237 7.22e-87 257
MS.gene029525.t1 MTR_0121s0100 83.333 132 22 0 1 132 1 132 9.07e-76 225
MS.gene029525.t1 MTR_3g030780 71.212 132 38 0 1 132 1 132 6.42e-62 190
MS.gene029525.t1 MTR_3g080940 53.714 175 79 2 9 183 9 181 1.29e-60 189
MS.gene029525.t1 MTR_1g075570 58.427 178 52 2 18 187 1 164 2.12e-57 179
MS.gene029525.t1 MTR_3g067910 63.107 103 38 0 21 123 2 104 1.54e-40 135
MS.gene029525.t1 MTR_8g086290 41.718 163 85 2 5 164 8 163 4.24e-37 128
MS.gene029525.t1 MTR_2g105290 39.130 161 94 1 5 165 8 164 2.79e-34 121
MS.gene029525.t1 MTR_7g028448 40.523 153 79 3 22 174 25 165 8.25e-31 112
MS.gene029525.t1 MTR_4g036915 40.523 153 79 3 22 174 25 165 8.25e-31 112
MS.gene029525.t1 MTR_1g108500 61.856 97 16 1 22 118 110 185 1.34e-29 113
MS.gene029525.t1 MTR_4g127140 37.427 171 93 3 5 165 8 174 2.69e-24 95.5
MS.gene029525.t1 MTR_3g067875 75.000 56 14 0 18 73 1 56 1.13e-23 90.5
MS.gene029525.t1 MTR_8g033220 31.390 223 123 7 10 216 3 211 8.18e-23 92.8
MS.gene029525.t1 MTR_8g033220 31.390 223 123 7 10 216 3 211 8.78e-23 92.8
MS.gene029525.t1 MTR_1g063160 52.564 78 37 0 9 86 2 79 1.42e-22 90.9
MS.gene029525.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 2.19e-22 91.3
MS.gene029525.t1 MTR_8g079502 44.554 101 54 1 9 109 2 100 4.24e-22 89.7
MS.gene029525.t1 MTR_1g047550 52.564 78 37 0 9 86 2 79 7.46e-22 89.0
MS.gene029525.t1 MTR_1g054265 51.282 78 38 0 9 86 2 79 9.07e-22 88.6
MS.gene029525.t1 MTR_3g067915 62.687 67 25 0 60 126 30 96 1.98e-21 85.5
MS.gene029525.t1 MTR_3g005530 55.882 68 30 0 9 76 2 69 2.58e-21 88.6
MS.gene029525.t1 MTR_5g066180 35.220 159 78 4 9 164 2 138 3.05e-21 88.6
MS.gene029525.t1 MTR_8g033270 35.802 162 86 4 9 160 2 155 3.52e-21 89.0
MS.gene029525.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 3.76e-21 86.7
MS.gene029525.t1 MTR_4g102530 58.209 67 28 0 10 76 3 69 5.99e-21 87.4
MS.gene029525.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.91e-20 85.1
MS.gene029525.t1 MTR_8g046350 37.692 130 73 3 9 135 2 126 2.96e-20 84.3
MS.gene029525.t1 MTR_3g452380 52.703 74 35 0 3 76 11 84 3.16e-20 86.3
MS.gene029525.t1 MTR_8g051580 55.072 69 31 0 9 77 2 70 5.31e-20 84.3
MS.gene029525.t1 MTR_7g075870 42.202 109 61 1 10 118 3 109 6.33e-20 84.7
MS.gene029525.t1 MTR_4g093970 60.606 66 26 0 10 75 29 94 8.93e-20 85.1
MS.gene029525.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 1.33e-19 84.7
MS.gene029525.t1 MTR_8g087860 37.097 124 66 3 9 126 18 135 2.97e-19 83.6
MS.gene029525.t1 MTR_3g102570 46.078 102 52 3 9 109 2 101 3.22e-19 84.7
MS.gene029525.t1 MTR_2g009890 51.471 68 33 0 9 76 2 69 3.86e-19 84.0
MS.gene029525.t1 MTR_3g067870 56.757 74 26 1 16 89 83 150 5.03e-19 80.9
MS.gene029525.t1 MTR_7g075870 41.818 110 61 2 10 118 3 110 1.11e-18 81.3
MS.gene029525.t1 MTR_2g017865 52.941 68 32 0 9 76 17 84 1.36e-18 82.0
MS.gene029525.t1 MTR_7g016600 54.930 71 29 2 7 76 2 70 1.60e-18 81.6
MS.gene029525.t1 MTR_0003s0590 43.902 82 46 0 9 90 2 83 1.67e-18 81.6
MS.gene029525.t1 MTR_5g032520 28.571 224 137 6 10 213 3 223 2.39e-18 80.9
MS.gene029525.t1 MTR_4g084740 47.059 85 44 1 9 92 2 86 3.33e-18 82.0
MS.gene029525.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 3.67e-18 79.3
MS.gene029525.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 4.91e-18 80.1
MS.gene029525.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 1.11e-17 76.3
MS.gene029525.t1 MTR_5g031000 50.000 68 34 0 9 76 2 69 1.15e-17 79.0
MS.gene029525.t1 MTR_5g031000 50.000 68 34 0 9 76 2 69 1.20e-17 79.3
MS.gene029525.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.84e-17 79.0
MS.gene029525.t1 MTR_7g075850 33.939 165 86 6 9 160 2 156 2.37e-17 78.6
MS.gene029525.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 3.57e-17 78.2
MS.gene029525.t1 MTR_8g066260 49.275 69 34 1 9 76 2 70 9.41e-17 76.6
MS.gene029525.t1 MTR_8g097090 50.725 69 33 1 9 76 2 70 1.05e-16 76.6
MS.gene029525.t1 MTR_3g084980 52.174 69 32 1 9 76 2 70 1.20e-16 76.6
MS.gene029525.t1 MTR_4g109830 46.377 69 36 1 9 76 2 70 1.68e-16 75.9
MS.gene029525.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 3.40e-16 75.1
MS.gene029525.t1 MTR_3g088615 48.571 70 34 1 9 76 2 71 3.69e-16 73.9
MS.gene029525.t1 MTR_5g046790 41.379 87 45 2 9 89 2 88 3.76e-16 74.7
MS.gene029525.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 5.98e-16 70.1
MS.gene029525.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 8.90e-16 74.3
MS.gene029525.t1 MTR_3g113030 31.977 172 91 6 9 173 2 154 9.64e-16 73.9
MS.gene029525.t1 MTR_5g066960 49.153 59 30 0 9 67 2 60 2.51e-15 68.6
MS.gene029525.t1 MTR_8g022970 31.325 166 85 4 8 159 17 167 3.08e-15 71.6
MS.gene029525.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 6.61e-15 72.0
MS.gene029525.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 8.16e-15 71.2
MS.gene029525.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 8.21e-15 71.2
MS.gene029525.t1 MTR_1g041615 39.048 105 55 2 20 123 17 113 2.08e-14 68.2
MS.gene029525.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 3.47e-14 68.6
MS.gene029525.t1 MTR_4g036050 29.358 218 120 9 9 209 2 202 4.91e-14 68.6
MS.gene029525.t1 MTR_4g036050 31.875 160 96 5 9 158 2 158 1.29e-13 67.4
MS.gene029525.t1 MTR_4g036050 30.114 176 106 7 9 173 2 171 2.08e-13 66.6
MS.gene029525.t1 MTR_3g109930 29.193 161 104 2 27 183 20 174 3.29e-13 65.9
MS.gene029525.t1 MTR_4g036050 28.218 202 115 8 9 209 2 174 3.43e-13 65.9
MS.gene029525.t1 MTR_4g108720 39.773 88 50 2 9 93 2 89 4.80e-13 67.8
MS.gene029525.t1 MTR_4g093030 36.170 94 44 1 9 86 2 95 1.35e-12 63.9
MS.gene029525.t1 MTR_3g437790 31.210 157 89 5 26 173 30 176 3.92e-12 63.2
MS.gene029525.t1 MTR_5g041650 42.466 73 40 1 9 79 39 111 1.27e-11 63.5
MS.gene029525.t1 MTR_4g051538 31.548 168 98 5 1 166 1 153 2.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029525.t1 AT5G60440 52.973 185 80 4 4 181 2 186 1.18e-56 182
MS.gene029525.t1 AT2G24840 49.398 166 73 4 9 168 63 223 1.52e-44 150
MS.gene029525.t1 AT1G01530 44.565 184 94 4 4 183 2 181 2.23e-41 141
MS.gene029525.t1 AT4G36590 42.353 170 92 2 4 167 2 171 2.43e-36 128
MS.gene029525.t1 AT1G65360 38.798 183 105 3 4 181 2 182 1.36e-35 126
MS.gene029525.t1 AT2G34440 38.514 148 89 2 9 156 2 147 3.36e-26 100
MS.gene029525.t1 AT3G04100 31.915 188 120 4 2 183 7 192 2.15e-25 99.0
MS.gene029525.t1 AT3G66656 42.857 119 64 2 9 123 2 120 2.34e-23 92.8
MS.gene029525.t1 AT4G09960 43.802 121 62 3 9 126 2 119 3.12e-23 93.6
MS.gene029525.t1 AT4G09960 43.802 121 62 3 9 126 3 120 3.78e-23 94.0
MS.gene029525.t1 AT4G09960 43.802 121 62 3 9 126 2 119 3.78e-23 93.6
MS.gene029525.t1 AT4G09960 43.802 121 62 3 9 126 12 129 4.67e-23 93.6
MS.gene029525.t1 AT4G09960 43.802 121 62 3 9 126 28 145 5.77e-23 94.0
MS.gene029525.t1 AT1G72350 31.792 173 78 4 9 174 43 182 1.09e-22 92.4
MS.gene029525.t1 AT2G45660 37.195 164 83 6 10 162 3 157 1.45e-22 90.5
MS.gene029525.t1 AT4G09960 44.000 125 62 4 5 126 95 214 1.57e-22 94.0
MS.gene029525.t1 AT2G45660 37.037 162 82 6 10 160 3 155 1.48e-21 89.4
MS.gene029525.t1 AT4G24540 37.838 148 75 4 9 156 2 132 4.52e-21 88.2
MS.gene029525.t1 AT2G45650 55.882 68 30 0 9 76 2 69 7.51e-21 88.2
MS.gene029525.t1 AT3G57230 51.471 68 33 0 9 76 2 69 2.03e-20 84.3
MS.gene029525.t1 AT4G18960 43.925 107 50 2 2 108 11 107 3.61e-20 86.3
MS.gene029525.t1 AT4G22950 48.837 86 38 1 10 89 3 88 3.91e-20 84.3
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 4.68e-20 83.6
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 4.68e-20 83.6
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 4.68e-20 83.6
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 5.96e-20 82.0
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 6.08e-20 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 6.08e-20 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 6.08e-20 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 6.08e-20 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 6.08e-20 83.2
MS.gene029525.t1 AT1G22130 39.831 118 69 2 9 125 2 118 9.51e-20 86.7
MS.gene029525.t1 AT3G57230 51.471 68 33 0 9 76 2 69 1.02e-19 84.7
MS.gene029525.t1 AT3G57230 51.471 68 33 0 9 76 2 69 1.02e-19 84.7
MS.gene029525.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.07e-19 83.2
MS.gene029525.t1 AT2G22540 55.224 67 30 0 10 76 3 69 1.38e-19 84.3
MS.gene029525.t1 AT2G22540 55.224 67 30 0 10 76 3 69 1.38e-19 84.3
MS.gene029525.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.53e-19 82.8
MS.gene029525.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.60e-19 82.8
MS.gene029525.t1 AT4G22950 56.716 67 29 0 10 76 3 69 1.80e-19 83.6
MS.gene029525.t1 AT4G22950 56.716 67 29 0 10 76 3 69 1.80e-19 83.6
MS.gene029525.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.83e-19 83.2
MS.gene029525.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.99e-19 82.8
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 2.17e-19 82.8
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 2.17e-19 82.8
MS.gene029525.t1 AT2G42830 52.000 75 34 1 2 76 12 84 2.34e-19 84.0
MS.gene029525.t1 AT2G42830 52.000 75 34 1 2 76 12 84 2.41e-19 84.0
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 2.42e-19 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 2.42e-19 83.2
MS.gene029525.t1 AT5G62165 55.224 67 30 0 10 76 3 69 2.42e-19 83.2
MS.gene029525.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.47e-19 83.2
MS.gene029525.t1 AT1G77980 40.678 118 68 2 9 125 2 118 3.57e-19 84.7
MS.gene029525.t1 AT4G37940 51.471 68 33 0 9 76 2 69 3.85e-19 83.2
MS.gene029525.t1 AT3G58780 52.000 75 34 1 2 76 12 84 3.92e-19 83.6
MS.gene029525.t1 AT5G51870 56.716 67 29 0 10 76 26 92 3.97e-19 82.4
MS.gene029525.t1 AT5G51870 56.716 67 29 0 10 76 3 69 4.22e-19 82.8
MS.gene029525.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.63e-19 82.4
MS.gene029525.t1 AT3G58780 52.000 75 34 1 2 76 18 90 4.84e-19 83.2
MS.gene029525.t1 AT3G57390 52.941 68 32 0 9 76 2 69 5.00e-19 82.8
MS.gene029525.t1 AT5G51870 56.716 67 29 0 10 76 13 79 5.30e-19 82.8
MS.gene029525.t1 AT4G37940 51.471 68 33 0 9 76 2 69 6.40e-19 81.3
MS.gene029525.t1 AT3G58780 52.000 75 34 1 2 76 12 84 6.74e-19 83.6
MS.gene029525.t1 AT1G28460 29.167 168 116 1 5 169 4 171 7.78e-19 81.3
MS.gene029525.t1 AT3G57390 52.941 68 32 0 9 76 2 69 1.47e-18 82.0
MS.gene029525.t1 AT4G11880 54.412 68 30 1 10 76 3 70 2.78e-18 79.7
MS.gene029525.t1 AT4G11880 54.412 68 30 1 10 76 3 70 2.78e-18 79.7
MS.gene029525.t1 AT1G29962 28.655 171 116 2 5 169 4 174 2.81e-18 79.7
MS.gene029525.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.87e-18 81.6
MS.gene029525.t1 AT5G13790 52.941 68 32 0 9 76 2 69 3.17e-18 81.3
MS.gene029525.t1 AT5G15800 53.623 69 31 1 9 76 2 70 3.90e-18 80.9
MS.gene029525.t1 AT4G11880 54.412 68 30 1 10 76 3 70 4.68e-18 80.1
MS.gene029525.t1 AT4G11880 54.412 68 30 1 10 76 3 70 4.68e-18 80.1
MS.gene029525.t1 AT5G15800 53.623 69 31 1 9 76 2 70 6.78e-18 80.5
MS.gene029525.t1 AT5G65050 52.174 69 32 1 9 76 2 70 8.29e-18 78.2
MS.gene029525.t1 AT3G30260 49.275 69 34 1 9 76 2 70 8.65e-18 79.7
MS.gene029525.t1 AT5G51860 53.731 67 31 0 10 76 3 69 1.31e-17 78.6
MS.gene029525.t1 AT1G26310 52.113 71 31 2 7 76 2 70 1.42e-17 79.3
MS.gene029525.t1 AT5G51860 53.731 67 31 0 10 76 3 69 1.69e-17 78.2
MS.gene029525.t1 AT1G77950 44.578 83 45 1 9 90 2 84 2.22e-17 79.0
MS.gene029525.t1 AT1G77950 44.578 83 45 1 9 90 2 84 2.22e-17 79.0
MS.gene029525.t1 AT1G77950 44.578 83 45 1 9 90 2 84 2.22e-17 79.0
MS.gene029525.t1 AT1G77950 44.578 83 45 1 9 90 2 84 2.22e-17 79.0
MS.gene029525.t1 AT5G65050 52.174 69 32 1 9 76 2 70 2.50e-17 77.4
MS.gene029525.t1 AT3G02310 52.174 69 32 1 9 76 2 70 2.52e-17 77.4
MS.gene029525.t1 AT2G03710 51.429 70 32 1 9 76 2 71 2.63e-17 77.4
MS.gene029525.t1 AT5G65050 52.174 69 32 1 9 76 2 70 2.72e-17 77.0
MS.gene029525.t1 AT5G65050 52.174 69 32 1 9 76 2 70 2.81e-17 77.4
MS.gene029525.t1 AT1G69120 52.113 71 31 2 7 76 2 70 3.29e-17 77.8
MS.gene029525.t1 AT2G14210 47.826 69 35 1 9 76 2 70 5.72e-17 77.4
MS.gene029525.t1 AT2G14210 47.826 69 35 1 9 76 2 70 7.43e-17 77.0
MS.gene029525.t1 AT3G02310 52.174 69 32 1 9 76 2 70 8.88e-17 77.0
MS.gene029525.t1 AT1G69120 50.725 69 33 1 9 76 2 70 9.68e-17 77.0
MS.gene029525.t1 AT1G24260 50.725 69 33 1 9 76 2 70 1.05e-16 77.0
MS.gene029525.t1 AT1G24260 50.725 69 33 1 9 76 2 70 1.06e-16 77.0
MS.gene029525.t1 AT5G60910 49.275 69 34 1 9 76 2 70 1.07e-16 76.6
MS.gene029525.t1 AT1G24260 50.725 69 33 1 9 76 2 70 1.10e-16 76.6
MS.gene029525.t1 AT2G22540 52.239 67 27 1 10 76 3 64 1.19e-16 76.6
MS.gene029525.t1 AT2G03710 51.429 70 32 1 9 76 2 71 1.25e-16 76.6
MS.gene029525.t1 AT2G03710 51.429 70 32 1 9 76 2 71 1.30e-16 76.6
MS.gene029525.t1 AT5G65060 50.725 69 33 1 9 76 2 70 1.38e-16 75.5
MS.gene029525.t1 AT3G58780 55.385 65 27 1 2 66 12 74 1.54e-16 76.3
MS.gene029525.t1 AT3G61120 48.529 68 35 0 9 76 2 69 1.80e-16 76.3
MS.gene029525.t1 AT5G23260 45.361 97 45 3 2 90 9 105 2.04e-16 76.3
MS.gene029525.t1 AT3G58780 52.941 68 30 1 2 69 12 77 2.09e-16 76.3
MS.gene029525.t1 AT5G65060 50.725 69 33 1 9 76 2 70 2.18e-16 74.7
MS.gene029525.t1 AT5G23260 45.361 97 45 3 2 90 9 105 2.31e-16 76.3
MS.gene029525.t1 AT5G65060 50.725 69 33 1 9 76 2 70 2.46e-16 74.7
MS.gene029525.t1 AT5G65070 44.928 69 37 1 9 76 2 70 2.69e-16 73.6
MS.gene029525.t1 AT5G23260 46.591 88 41 2 9 90 2 89 3.15e-16 75.5
MS.gene029525.t1 AT5G23260 46.591 88 41 2 9 90 2 89 3.49e-16 75.5
MS.gene029525.t1 AT5G65070 44.928 69 37 1 9 76 2 70 5.29e-16 73.9
MS.gene029525.t1 AT5G20240 47.945 73 36 1 9 79 2 74 5.98e-16 72.8
MS.gene029525.t1 AT3G54340 34.615 130 71 5 9 125 2 130 6.76e-16 74.3
MS.gene029525.t1 AT1G28450 27.811 169 116 2 5 167 4 172 7.09e-16 73.2
MS.gene029525.t1 AT5G20240 47.945 73 36 1 9 79 2 74 7.13e-16 73.9
MS.gene029525.t1 AT2G22630 47.059 68 36 0 9 76 2 69 1.19e-15 73.6
MS.gene029525.t1 AT2G22630 47.059 68 36 0 9 76 2 69 1.19e-15 73.6
MS.gene029525.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.22e-15 73.2
MS.gene029525.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.23e-15 73.6
MS.gene029525.t1 AT1G71692 47.826 69 35 1 10 77 3 71 2.39e-15 72.4
MS.gene029525.t1 AT1G18750 42.857 77 42 1 9 83 2 78 7.31e-15 73.2
MS.gene029525.t1 AT1G18750 42.857 77 42 1 9 83 2 78 8.01e-15 73.2
MS.gene029525.t1 AT1G18750 42.857 77 42 1 9 83 2 78 8.37e-15 73.2
MS.gene029525.t1 AT5G65070 48.333 60 31 0 9 68 2 61 1.06e-14 71.2
MS.gene029525.t1 AT1G17310 53.947 76 33 1 8 83 47 120 1.18e-14 70.9
MS.gene029525.t1 AT1G17310 53.947 76 33 1 8 83 58 131 1.62e-14 70.5
MS.gene029525.t1 AT5G65080 44.928 69 37 1 9 76 9 77 2.53e-14 69.3
MS.gene029525.t1 AT1G47760 43.284 67 38 0 9 75 2 68 1.22e-13 67.4
MS.gene029525.t1 AT5G65080 51.852 54 26 0 9 62 9 62 1.48e-13 67.4
MS.gene029525.t1 AT4G37435 43.662 71 39 1 9 78 2 72 1.59e-13 67.0
MS.gene029525.t1 AT5G49490 38.889 90 48 2 4 86 40 129 4.36e-13 67.4
MS.gene029525.t1 AT1G77080 53.623 69 31 1 9 76 2 70 4.53e-13 65.5
MS.gene029525.t1 AT1G77080 53.623 69 31 1 9 76 2 70 5.30e-13 65.5
MS.gene029525.t1 AT1G77080 53.623 69 31 1 9 76 2 70 1.26e-12 64.7
MS.gene029525.t1 AT2G03060 29.762 168 97 7 9 159 2 165 2.32e-12 65.9
MS.gene029525.t1 AT2G03060 29.762 168 97 7 9 159 2 165 2.32e-12 65.9
MS.gene029525.t1 AT2G03060 29.762 168 97 7 9 159 2 165 2.32e-12 65.9
MS.gene029525.t1 AT5G49420 37.234 94 52 2 5 91 3 96 2.34e-12 65.5
MS.gene029525.t1 AT2G03060 29.762 168 97 7 9 159 2 165 2.73e-12 65.9
MS.gene029525.t1 AT1G77080 53.623 69 31 1 9 76 2 70 3.30e-12 63.9
MS.gene029525.t1 AT1G69540 40.789 76 44 1 9 83 2 77 5.44e-12 64.7
MS.gene029525.t1 AT1G69540 40.789 76 44 1 9 83 2 77 7.74e-12 64.3
MS.gene029525.t1 AT1G46408 46.053 76 37 2 7 78 2 77 1.20e-11 63.2
MS.gene029525.t1 AT2G26320 39.726 73 42 1 9 79 18 90 3.23e-11 58.9
MS.gene029525.t1 AT5G38620 42.857 77 39 2 6 78 3 78 6.02e-11 61.6
MS.gene029525.t1 AT1G60920 37.500 88 46 2 7 85 2 89 9.71e-11 59.3

Find 46 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAGCTTGTTGAGGATT+TGG 0.288922 1.3:-74063668 None:intergenic
TTGCAGACTCATTTGTTTGA+TGG 0.299389 1.3:+74063728 MS.gene029525:CDS
GCAATTGCAACATAGGGTTT+TGG 0.318308 1.3:-74063709 None:intergenic
TGAAATATTCAAGAAGGCTT+TGG 0.322746 1.3:+74063547 MS.gene029525:CDS
ATTGCATGGTGCTGTCGTTT+TGG 0.328236 1.3:-74063349 None:intergenic
CTCATCTCCAATCTTCTTCT+CGG 0.357404 1.3:-74063447 None:intergenic
TGGTGGGCTTGTCCGGTTGA+TGG 0.362109 1.3:+74063506 MS.gene029525:CDS
CTTTCTCAAAGCGCCGTAAC+GGG 0.409500 1.3:+74063183 MS.gene029525:CDS
GTCTATGACCGTATCAAGAT+TGG 0.432634 1.3:-74063303 None:intergenic
CTGGATGCCGAGAAGAAGAT+TGG 0.435713 1.3:+74063440 MS.gene029525:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 1.3:+74063221 MS.gene029525:CDS
AGGAAACCGAGGCTAAGTTT+TGG 0.459813 1.3:+74063486 MS.gene029525:CDS
TGAGTCTGCAATTGCAACAT+AGG 0.462179 1.3:-74063716 None:intergenic
GTTGAGGATTTGGCTGATGA+TGG 0.468844 1.3:-74063658 None:intergenic
GCCTTTCCTTGCACTCGACA+TGG 0.474891 1.3:-74063102 None:intergenic
AATATTCAAGAAGGCTTTGG+AGG 0.481574 1.3:+74063550 MS.gene029525:CDS
ATGATGGATATAAATGTTAG+AGG 0.488505 1.3:-74063642 None:intergenic
ACTTTCTCAAAGCGCCGTAA+CGG 0.489334 1.3:+74063182 MS.gene029525:CDS
AGCAGCATCTGCACCACAAA+GGG 0.494828 1.3:-74063234 None:intergenic
TCAACTTGAAATATTCAAGA+AGG 0.504642 1.3:+74063541 MS.gene029525:CDS
TCTCTATTCATACCATCAAC+CGG 0.508999 1.3:-74063518 None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 1.3:-74063219 None:intergenic
CTTTCTTAAAGAGCCCGTTA+CGG 0.532996 1.3:-74063196 None:intergenic
TGGTCACTCCAATCTTGATA+CGG 0.539290 1.3:+74063295 MS.gene029525:CDS
GAGTCTGCAATTGCAACATA+GGG 0.542535 1.3:-74063715 None:intergenic
GGAAACATTTCAGCTTGTTG+AGG 0.562544 1.3:-74063674 None:intergenic
ACACTATATTATTGAAACCA+TGG 0.562826 1.3:-74063766 None:intergenic
AGCCCACCAAAACTTAGCCT+CGG 0.573174 1.3:-74063492 None:intergenic
CTTCAGCCATGTCGAGTGCA+AGG 0.573469 1.3:+74063096 None:intergenic
GGCTCGATTATTCCTCACCA+TGG 0.575062 1.3:+74063749 MS.gene029525:CDS
TCGAGTGCAAGGAAAGGCCG+AGG 0.595815 1.3:+74063107 MS.gene029525:CDS
ATCAAGATTGGAGTGACCAA+AGG 0.597538 1.3:-74063291 None:intergenic
AGCATTGAGTTCACGAACGT+TGG 0.603238 1.3:-74063393 None:intergenic
CTAGTTGTATTCTCACCTAG+TGG 0.605407 1.3:+74063257 MS.gene029525:CDS
TGTATTCTCACCTAGTGGAA+AGG 0.611194 1.3:+74063262 MS.gene029525:CDS
GAGCAGCATCTGCACCACAA+AGG 0.621182 1.3:-74063235 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.624124 1.3:-74063272 None:intergenic
GCCATGTCGAGTGCAAGGAA+AGG 0.627385 1.3:+74063101 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 1.3:-74063385 None:intergenic
GTGAGCCTCAATGAATTGCA+TGG 0.638934 1.3:-74063363 None:intergenic
GACTCAAATCAACAACACAC+TGG 0.641274 1.3:+74063421 MS.gene029525:CDS
TGAGCTGAGCAATTTACGCA+AGG 0.645129 1.3:+74063466 MS.gene029525:CDS
CAATTTACGCAAGGAAACCG+AGG 0.655078 1.3:+74063475 MS.gene029525:CDS
CAGCACCATGCAATTCATTG+AGG 0.658628 1.3:+74063358 MS.gene029525:CDS
ATATTATTGAAACCATGGTG+AGG 0.682934 1.3:-74063761 None:intergenic
TTGGGATGAGAGAAAGATAG+CGG 0.703250 1.3:-74063325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACACTATATTATTGAAACCA+TGG - chr1.3:74063769-74063788 None:intergenic 25.0%
! TCAACTTGAAATATTCAAGA+AGG + chr1.3:74063541-74063560 MS.gene029525:CDS 25.0%
!!! ATGATGGATATAAATGTTAG+AGG - chr1.3:74063645-74063664 None:intergenic 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr1.3:74063136-74063155 None:intergenic 25.0%
ATATTATTGAAACCATGGTG+AGG - chr1.3:74063764-74063783 None:intergenic 30.0%
TGAAATATTCAAGAAGGCTT+TGG + chr1.3:74063547-74063566 MS.gene029525:CDS 30.0%
! TTTTCATCTCAATCTTTTGG+CGG - chr1.3:74063133-74063152 None:intergenic 30.0%
!!! ATAGGGTTTTGGAAAATTTG+TGG - chr1.3:74063701-74063720 None:intergenic 30.0%
!!! CAAACTCTTCCATTTTTTGT+TGG + chr1.3:74063608-74063627 MS.gene029525:CDS 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.3:74063275-74063294 None:intergenic 35.0%
TCTCTATTCATACCATCAAC+CGG - chr1.3:74063521-74063540 None:intergenic 35.0%
TTGCAGACTCATTTGTTTGA+TGG + chr1.3:74063728-74063747 MS.gene029525:CDS 35.0%
! AATATTCAAGAAGGCTTTGG+AGG + chr1.3:74063550-74063569 MS.gene029525:CDS 35.0%
!! ATTTCAGCTTGTTGAGGATT+TGG - chr1.3:74063671-74063690 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.3:74063275-74063294 MS.gene029525:CDS 35.0%
ATCAAGATTGGAGTGACCAA+AGG - chr1.3:74063294-74063313 None:intergenic 40.0%
CTAGTTGTATTCTCACCTAG+TGG + chr1.3:74063257-74063276 MS.gene029525:CDS 40.0%
CTCATCTCCAATCTTCTTCT+CGG - chr1.3:74063450-74063469 None:intergenic 40.0%
CTTTCTTAAAGAGCCCGTTA+CGG - chr1.3:74063199-74063218 None:intergenic 40.0%
GACTCAAATCAACAACACAC+TGG + chr1.3:74063421-74063440 MS.gene029525:CDS 40.0%
GAGTCTGCAATTGCAACATA+GGG - chr1.3:74063718-74063737 None:intergenic 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.3:74063306-74063325 None:intergenic 40.0%
TGAGTCTGCAATTGCAACAT+AGG - chr1.3:74063719-74063738 None:intergenic 40.0%
TGGTCACTCCAATCTTGATA+CGG + chr1.3:74063295-74063314 MS.gene029525:CDS 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr1.3:74063262-74063281 MS.gene029525:CDS 40.0%
TTGGGATGAGAGAAAGATAG+CGG - chr1.3:74063328-74063347 None:intergenic 40.0%
! GCAATTGCAACATAGGGTTT+TGG - chr1.3:74063712-74063731 None:intergenic 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - chr1.3:74063620-74063639 None:intergenic 40.0%
!! GGAAACATTTCAGCTTGTTG+AGG - chr1.3:74063677-74063696 None:intergenic 40.0%
!!! GGGTTTTGGAAAATTTGTGG+TGG - chr1.3:74063698-74063717 None:intergenic 40.0%
CAATTTACGCAAGGAAACCG+AGG + chr1.3:74063475-74063494 MS.gene029525:CDS 45.0%
CAGCACCATGCAATTCATTG+AGG + chr1.3:74063358-74063377 MS.gene029525:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr1.3:74063366-74063385 None:intergenic 45.0%
GTTGAGGATTTGGCTGATGA+TGG - chr1.3:74063661-74063680 None:intergenic 45.0%
TGAGCTGAGCAATTTACGCA+AGG + chr1.3:74063466-74063485 MS.gene029525:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG - chr1.3:74063396-74063415 None:intergenic 45.0%
! AGGAAACCGAGGCTAAGTTT+TGG + chr1.3:74063486-74063505 MS.gene029525:CDS 45.0%
!! AAACCGAGGCTAAGTTTTGG+TGG + chr1.3:74063489-74063508 MS.gene029525:CDS 45.0%
!! AACCGAGGCTAAGTTTTGGT+GGG + chr1.3:74063490-74063509 MS.gene029525:CDS 45.0%
!! ACTTTCTCAAAGCGCCGTAA+CGG + chr1.3:74063182-74063201 MS.gene029525:CDS 45.0%
!!! ATTGCATGGTGCTGTCGTTT+TGG - chr1.3:74063352-74063371 None:intergenic 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.3:74063499-74063518 MS.gene029525:CDS 45.0%
!!! TTGCATGGTGCTGTCGTTTT+GGG - chr1.3:74063351-74063370 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.3:74063237-74063256 None:intergenic 50.0%
AGCCCACCAAAACTTAGCCT+CGG - chr1.3:74063495-74063514 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr1.3:74063221-74063240 MS.gene029525:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + chr1.3:74063440-74063459 MS.gene029525:CDS 50.0%
GGCTCGATTATTCCTCACCA+TGG + chr1.3:74063749-74063768 MS.gene029525:CDS 50.0%
GTTCACGAACGTTGGCATTG+CGG - chr1.3:74063388-74063407 None:intergenic 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG - chr1.3:74063222-74063241 None:intergenic 50.0%
! TCTCAATCTTTTGGCGGCCT+CGG - chr1.3:74063127-74063146 None:intergenic 50.0%
!! CTTTCTCAAAGCGCCGTAAC+GGG + chr1.3:74063183-74063202 MS.gene029525:CDS 50.0%
!!! ATGGTGCTGTCGTTTTGGGT+TGG - chr1.3:74063347-74063366 None:intergenic 50.0%
!!! TGGTGCTGTCGTTTTGGGTT+GGG - chr1.3:74063346-74063365 None:intergenic 50.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.3:74063238-74063257 None:intergenic 55.0%
TCGAGTGCAAGGAAAGGCCG+AGG + chr1.3:74063107-74063126 MS.gene029525:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.3:74063506-74063525 MS.gene029525:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74063104 74063790 74063104 ID=MS.gene029525
chr1.3 mRNA 74063104 74063790 74063104 ID=MS.gene029525.t1;Parent=MS.gene029525
chr1.3 exon 74063104 74063790 74063104 ID=MS.gene029525.t1.exon1;Parent=MS.gene029525.t1
chr1.3 CDS 74063104 74063790 74063104 ID=cds.MS.gene029525.t1;Parent=MS.gene029525.t1
Gene Sequence

>MS.gene029525

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATTAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAACGGGCTCTTTAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACTCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTCATCCCAACCCAAAACGACAGCACCATGCAATTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGCTGACTCAAATCAACAACACACTGGATGCCGAGAAGAAGATTGGAGATGAGCTGAGCAATTTACGCAAGGAAACCGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGTATGAATAGAGATCAACTTGAAATATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGTTGCTACTCAAACTCTTCCATTTTTTGTTGGCAACGCTTCATCCTCTAACATTTATATCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACAAATTTTCCAAAACCCTATGTTGCAATTGCAGACTCATTTGTTTGATGGCTCGATTATTCCTCACCATGGTTTCAATAATATAGTGTAA
Protein sequence

>MS.gene029525.t1

MSSARKGRGRQKIEMKKISNESNLQVTFSKRRNGLFKKASELCTLCGADAALVVFSPSGKVFSFGHSNLDTVIDRYLSLIPTQNDSTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLRKETEAKFWWACPVDGMNRDQLEIFKKALEELKKLVIQHVATQTLPFFVGNASSSNIYIHHQPNPQQAEMFPPQIFQNPMLQLQTHLFDGSIIPHHGFNNIV