AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029529

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029529.t1 MTR_1g108510 90.351 228 22 0 1 228 1 228 4.79e-158 437
MS.gene029529.t1 MTR_3g030770 89.035 228 25 0 1 228 1 228 1.53e-155 430
MS.gene029529.t1 MTR_1g108580 86.842 228 30 0 1 228 1 228 1.78e-149 415
MS.gene029529.t1 MTR_2g093190 86.404 228 31 0 1 228 1 228 3.29e-149 414
MS.gene029529.t1 MTR_1g105920 75.113 221 45 2 1 213 1 219 1.91e-115 329
MS.gene029529.t1 MTR_1g105910 69.362 235 54 3 1 227 1 225 5.71e-112 320
MS.gene029529.t1 MTR_8g043650 70.996 231 57 2 1 223 1 229 1.39e-111 320
MS.gene029529.t1 MTR_2g030740 71.493 221 53 2 1 213 1 219 1.88e-110 317
MS.gene029529.t1 MTR_3g052920 71.041 221 54 2 1 213 1 219 8.74e-110 315
MS.gene029529.t1 MTR_1g012570 70.136 221 56 2 1 213 1 219 1.51e-107 309
MS.gene029529.t1 MTR_0121s0080 65.532 235 63 3 1 227 1 225 1.79e-102 296
MS.gene029529.t1 MTR_1g077360 62.979 235 69 3 1 227 1 225 4.81e-100 290
MS.gene029529.t1 MTR_1g075600 63.404 235 68 3 1 227 1 225 6.35e-99 288
MS.gene029529.t1 MTR_1g105905 65.596 218 57 3 18 227 1 208 3.11e-96 280
MS.gene029529.t1 MTR_5g045560 62.128 235 71 3 1 227 1 225 4.14e-95 278
MS.gene029529.t1 MTR_5g053390 61.702 235 72 3 1 227 1 225 5.90e-94 275
MS.gene029529.t1 MTR_3g052870 66.516 221 45 5 1 213 1 200 1.94e-92 270
MS.gene029529.t1 MTR_2g085280 60.851 235 74 3 1 227 1 225 5.27e-92 270
MS.gene029529.t1 MTR_2g085250 61.674 227 77 2 1 219 1 225 8.44e-92 270
MS.gene029529.t1 MTR_5g055100 59.574 235 77 3 1 227 1 225 1.65e-90 266
MS.gene029529.t1 MTR_1g106070 71.978 182 43 1 1 174 1 182 1.20e-89 262
MS.gene029529.t1 MTR_7g062350 60.633 221 68 4 16 227 27 237 2.00e-82 246
MS.gene029529.t1 MTR_0121s0100 86.364 132 18 0 1 132 1 132 1.09e-78 232
MS.gene029529.t1 MTR_3g030780 68.939 132 41 0 1 132 1 132 6.50e-61 187
MS.gene029529.t1 MTR_3g080940 55.263 152 68 0 9 160 9 160 2.78e-58 183
MS.gene029529.t1 MTR_1g075570 58.989 178 51 2 18 187 1 164 1.04e-57 180
MS.gene029529.t1 MTR_3g067910 64.078 103 37 0 21 123 2 104 5.57e-41 136
MS.gene029529.t1 MTR_8g086290 41.818 165 86 2 5 166 8 165 1.40e-38 132
MS.gene029529.t1 MTR_2g105290 38.182 165 92 2 5 166 8 165 4.38e-34 120
MS.gene029529.t1 MTR_7g028448 40.588 170 89 2 5 174 8 165 2.52e-32 115
MS.gene029529.t1 MTR_4g036915 40.588 170 89 2 5 174 8 165 2.52e-32 115
MS.gene029529.t1 MTR_1g108500 60.825 97 17 1 22 118 110 185 1.85e-29 112
MS.gene029529.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 1.48e-26 97.8
MS.gene029529.t1 MTR_4g127140 36.571 175 91 4 5 166 8 175 4.76e-24 95.1
MS.gene029529.t1 MTR_3g067915 49.474 95 48 0 32 126 2 96 3.12e-23 90.1
MS.gene029529.t1 MTR_1g063160 46.667 105 54 2 9 111 2 106 4.59e-23 92.0
MS.gene029529.t1 MTR_8g079502 55.072 69 31 0 9 77 2 70 1.52e-21 88.2
MS.gene029529.t1 MTR_1g047550 55.072 69 31 0 9 77 2 70 1.61e-21 88.2
MS.gene029529.t1 MTR_1g054265 52.055 73 35 0 9 81 2 74 4.51e-21 86.7
MS.gene029529.t1 MTR_4g131030 39.655 116 55 3 9 109 2 117 5.34e-21 87.8
MS.gene029529.t1 MTR_4g094632 39.091 110 65 1 9 118 2 109 1.93e-20 84.7
MS.gene029529.t1 MTR_8g046350 36.154 130 75 2 9 135 2 126 2.39e-20 84.7
MS.gene029529.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.93e-20 84.7
MS.gene029529.t1 MTR_3g067870 63.934 61 22 0 16 76 83 143 5.58e-20 83.6
MS.gene029529.t1 MTR_8g051580 53.623 69 32 0 9 77 2 70 6.75e-20 84.0
MS.gene029529.t1 MTR_3g005530 51.429 70 32 1 7 76 2 69 5.87e-19 82.4
MS.gene029529.t1 MTR_5g066180 31.928 166 88 4 9 171 2 145 6.96e-19 82.4
MS.gene029529.t1 MTR_4g102530 52.308 65 31 0 12 76 5 69 3.18e-18 80.1
MS.gene029529.t1 MTR_8g033270 32.927 164 90 5 7 160 2 155 7.77e-18 80.1
MS.gene029529.t1 MTR_3g452380 49.333 75 36 1 2 76 12 84 1.04e-17 79.3
MS.gene029529.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 1.37e-17 79.0
MS.gene029529.t1 MTR_8g033220 30.045 223 122 9 12 216 5 211 1.93e-17 78.2
MS.gene029529.t1 MTR_8g033220 30.045 223 122 9 12 216 5 211 2.28e-17 78.2
MS.gene029529.t1 MTR_0003s0590 42.857 84 46 1 7 90 2 83 3.45e-17 78.2
MS.gene029529.t1 MTR_8g087860 37.097 124 74 3 4 126 15 135 4.75e-17 77.8
MS.gene029529.t1 MTR_3g102570 42.157 102 56 3 9 109 2 101 4.85e-17 78.6
MS.gene029529.t1 MTR_1g101970 50.000 70 33 1 7 76 2 69 5.35e-17 76.3
MS.gene029529.t1 MTR_7g075870 45.977 87 41 2 12 92 5 91 5.54e-17 77.0
MS.gene029529.t1 MTR_1g053070 50.000 70 33 1 7 76 2 69 7.55e-17 77.0
MS.gene029529.t1 MTR_4g109830 46.479 71 35 2 7 76 2 70 9.19e-17 76.6
MS.gene029529.t1 MTR_2g017865 36.585 123 74 3 5 126 15 134 1.14e-16 77.0
MS.gene029529.t1 MTR_2g009890 47.143 70 35 1 7 76 2 69 1.55e-16 76.6
MS.gene029529.t1 MTR_5g032150 45.588 68 37 0 9 76 2 69 2.35e-16 75.5
MS.gene029529.t1 MTR_5g032520 45.588 68 37 0 9 76 2 69 2.38e-16 75.5
MS.gene029529.t1 MTR_6g464720 47.887 71 34 2 7 76 2 70 2.75e-16 75.9
MS.gene029529.t1 MTR_8g022970 32.026 153 101 2 8 159 17 167 2.75e-16 74.3
MS.gene029529.t1 MTR_5g031000 47.143 70 35 1 7 76 2 69 4.87e-16 74.7
MS.gene029529.t1 MTR_5g031000 47.143 70 35 1 7 76 2 69 5.06e-16 74.7
MS.gene029529.t1 MTR_7g075870 45.455 88 41 3 12 92 5 92 1.01e-15 73.6
MS.gene029529.t1 MTR_7g016600 47.887 71 34 2 7 76 2 70 1.28e-15 73.9
MS.gene029529.t1 MTR_6g015975 47.887 71 34 2 7 76 2 70 1.42e-15 73.6
MS.gene029529.t1 MTR_8g066260 45.070 71 36 2 7 76 2 70 4.03e-15 72.4
MS.gene029529.t1 MTR_3g088615 47.222 72 34 2 7 76 2 71 4.21e-15 71.2
MS.gene029529.t1 MTR_5g046870 46.479 71 35 2 7 76 2 70 8.43e-15 68.6
MS.gene029529.t1 MTR_1g038300 47.222 72 34 2 7 76 2 71 8.94e-15 71.2
MS.gene029529.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 1.30e-14 70.5
MS.gene029529.t1 MTR_2g461710 53.448 58 25 1 7 64 2 57 1.39e-14 66.6
MS.gene029529.t1 MTR_1g029670 45.833 72 35 2 7 76 2 71 1.41e-14 69.7
MS.gene029529.t1 MTR_4g084740 46.250 80 41 2 9 87 2 80 1.49e-14 72.0
MS.gene029529.t1 MTR_7g016630 42.254 71 38 2 7 76 2 70 1.75e-14 70.9
MS.gene029529.t1 MTR_8g097090 45.070 71 36 2 7 76 2 70 1.25e-13 68.2
MS.gene029529.t1 MTR_5g021270 48.611 72 33 2 7 76 2 71 1.29e-13 68.2
MS.gene029529.t1 MTR_5g021270 48.611 72 33 2 7 76 2 71 1.29e-13 68.2
MS.gene029529.t1 MTR_7g075850 45.833 72 35 2 7 76 2 71 1.31e-13 68.2
MS.gene029529.t1 MTR_3g084980 46.479 71 35 2 7 76 2 70 1.48e-13 68.2
MS.gene029529.t1 MTR_4g109810 50.000 58 27 1 7 64 2 57 2.76e-13 67.4
MS.gene029529.t1 MTR_3g113030 46.667 60 32 0 12 71 5 64 4.09e-13 66.6
MS.gene029529.t1 MTR_3g109930 29.927 137 86 2 27 159 20 150 4.89e-13 65.5
MS.gene029529.t1 MTR_5g066960 45.763 59 30 1 7 65 2 58 8.04e-13 61.6
MS.gene029529.t1 MTR_1g041615 39.048 105 55 2 20 123 17 113 3.38e-12 62.0
MS.gene029529.t1 MTR_3g437790 30.216 139 88 4 26 159 30 164 4.75e-12 62.8
MS.gene029529.t1 MTR_4g108720 41.333 75 42 1 9 81 2 76 1.53e-11 63.2
MS.gene029529.t1 MTR_4g036050 25.824 182 112 4 12 186 5 170 2.31e-11 61.2
MS.gene029529.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 2.94e-11 60.8
MS.gene029529.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 2.99e-11 60.5
MS.gene029529.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 3.60e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029529.t1 AT5G60440 54.645 183 76 4 5 180 3 185 1.85e-58 187
MS.gene029529.t1 AT2G24840 47.904 167 74 3 9 168 63 223 1.06e-43 148
MS.gene029529.t1 AT1G01530 42.857 182 98 3 4 181 2 181 9.22e-41 140
MS.gene029529.t1 AT4G36590 42.012 169 92 2 5 167 3 171 4.86e-36 127
MS.gene029529.t1 AT1G65360 41.111 180 99 4 5 179 3 180 9.22e-36 126
MS.gene029529.t1 AT2G34440 37.838 148 90 2 9 156 2 147 3.15e-27 102
MS.gene029529.t1 AT3G66656 39.370 127 73 1 9 131 2 128 6.08e-24 94.4
MS.gene029529.t1 AT3G04100 30.851 188 122 4 2 183 7 192 9.36e-23 92.0
MS.gene029529.t1 AT1G72350 32.370 173 77 5 9 174 43 182 2.73e-20 85.9
MS.gene029529.t1 AT2G45660 42.157 102 50 2 12 104 5 106 4.70e-20 83.6
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 2 119 5.65e-20 85.1
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 2 119 6.07e-20 85.1
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 3 120 6.18e-20 85.1
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 12 129 8.33e-20 85.1
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 28 145 9.08e-20 85.1
MS.gene029529.t1 AT4G09960 39.837 123 66 4 7 126 97 214 1.92e-19 85.5
MS.gene029529.t1 AT2G45660 42.157 102 50 2 12 104 5 106 2.81e-19 83.2
MS.gene029529.t1 AT4G24540 33.108 148 82 3 9 156 2 132 8.70e-19 82.0
MS.gene029529.t1 AT2G45650 51.429 70 32 1 7 76 2 69 1.71e-18 81.6
MS.gene029529.t1 AT1G28460 31.214 173 106 4 5 169 4 171 3.76e-18 79.3
MS.gene029529.t1 AT5G13790 43.000 100 46 2 7 106 2 90 6.74e-18 80.5
MS.gene029529.t1 AT5G51870 53.846 65 30 0 12 76 5 69 6.77e-18 78.6
MS.gene029529.t1 AT2G42830 49.333 75 36 1 2 76 12 84 8.59e-18 79.7
MS.gene029529.t1 AT5G51870 53.846 65 30 0 12 76 5 69 8.60e-18 79.0
MS.gene029529.t1 AT2G42830 49.333 75 36 1 2 76 12 84 8.96e-18 79.7
MS.gene029529.t1 AT5G51870 53.846 65 30 0 12 76 5 69 1.28e-17 79.0
MS.gene029529.t1 AT4G18960 44.444 90 47 2 5 93 16 103 1.28e-17 79.3
MS.gene029529.t1 AT5G51870 51.351 74 34 1 3 76 8 79 1.48e-17 79.0
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.57e-17 75.5
MS.gene029529.t1 AT3G57230 35.385 130 69 4 7 130 2 122 1.63e-17 76.6
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene029529.t1 AT3G58780 49.333 75 36 1 2 76 12 84 1.79e-17 79.0
MS.gene029529.t1 AT5G51870 53.846 65 30 0 12 76 28 92 1.88e-17 77.8
MS.gene029529.t1 AT2G22540 30.769 169 90 4 9 172 2 148 2.11e-17 78.6
MS.gene029529.t1 AT2G22540 30.769 169 90 4 9 172 2 148 2.11e-17 78.6
MS.gene029529.t1 AT4G22950 47.887 71 37 0 12 82 5 75 2.15e-17 77.0
MS.gene029529.t1 AT1G29962 30.508 177 105 4 5 169 4 174 2.16e-17 77.4
MS.gene029529.t1 AT3G58780 49.333 75 36 1 2 76 18 90 2.34e-17 78.6
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene029529.t1 AT3G58780 49.333 75 36 1 2 76 12 84 3.08e-17 79.0
MS.gene029529.t1 AT4G37940 47.143 70 35 1 7 76 2 69 3.55e-17 77.8
MS.gene029529.t1 AT4G37940 47.143 70 35 1 7 76 2 69 4.51e-17 77.0
MS.gene029529.t1 AT5G13790 51.429 70 32 1 7 76 2 69 6.47e-17 77.8
MS.gene029529.t1 AT3G57230 35.385 130 69 4 7 130 2 122 6.49e-17 77.4
MS.gene029529.t1 AT3G57230 35.385 130 69 4 7 130 2 122 6.49e-17 77.4
MS.gene029529.t1 AT5G10140 50.725 69 33 1 9 76 2 70 6.88e-17 75.5
MS.gene029529.t1 AT4G37940 47.143 70 35 1 7 76 2 69 6.99e-17 75.9
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.51e-17 76.3
MS.gene029529.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.51e-17 76.3
MS.gene029529.t1 AT3G57390 48.571 70 34 1 7 76 2 69 9.24e-17 76.6
MS.gene029529.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.06e-16 75.5
MS.gene029529.t1 AT4G22950 50.769 65 32 0 12 76 5 69 1.13e-16 76.3
MS.gene029529.t1 AT4G22950 50.769 65 32 0 12 76 5 69 1.13e-16 76.3
MS.gene029529.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.29e-16 75.1
MS.gene029529.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.52e-16 75.5
MS.gene029529.t1 AT3G57390 48.571 70 34 1 7 76 2 69 2.11e-16 76.3
MS.gene029529.t1 AT1G22130 35.593 118 74 2 9 125 2 118 3.35e-16 76.6
MS.gene029529.t1 AT5G51860 50.769 65 32 0 12 76 5 69 4.85e-16 74.3
MS.gene029529.t1 AT3G61120 48.571 70 34 1 7 76 2 69 5.17e-16 74.7
MS.gene029529.t1 AT1G26310 41.758 91 43 3 7 89 2 90 6.81e-16 74.7
MS.gene029529.t1 AT5G51860 50.769 65 32 0 12 76 5 69 7.14e-16 73.9
MS.gene029529.t1 AT1G69120 41.573 89 42 3 7 87 2 88 9.26e-16 73.9
MS.gene029529.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene029529.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene029529.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene029529.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene029529.t1 AT3G30260 45.070 71 36 2 7 76 2 70 1.09e-15 73.9
MS.gene029529.t1 AT2G14210 45.070 71 36 2 7 76 2 70 1.64e-15 73.2
MS.gene029529.t1 AT2G14210 45.070 71 36 2 7 76 2 70 2.16e-15 73.2
MS.gene029529.t1 AT4G11880 48.485 66 33 1 12 76 5 70 2.26e-15 72.0
MS.gene029529.t1 AT4G11880 48.485 66 33 1 12 76 5 70 2.26e-15 72.0
MS.gene029529.t1 AT5G60910 46.479 71 35 2 7 76 2 70 2.30e-15 73.2
MS.gene029529.t1 AT1G69120 41.573 89 42 3 7 87 2 88 2.80e-15 73.2
MS.gene029529.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.91e-15 71.2
MS.gene029529.t1 AT3G58780 52.308 65 29 1 2 66 12 74 4.11e-15 72.4
MS.gene029529.t1 AT5G15800 47.887 71 34 2 7 76 2 70 4.26e-15 72.4
MS.gene029529.t1 AT4G11880 48.485 66 33 1 12 76 5 70 4.54e-15 72.0
MS.gene029529.t1 AT4G11880 48.485 66 33 1 12 76 5 70 4.54e-15 72.0
MS.gene029529.t1 AT3G58780 52.308 65 29 1 2 66 12 74 5.28e-15 72.4
MS.gene029529.t1 AT1G77980 42.045 88 50 1 9 95 2 89 5.59e-15 73.2
MS.gene029529.t1 AT2G22540 32.026 153 72 5 9 156 2 127 5.95e-15 72.0
MS.gene029529.t1 AT5G20240 45.333 75 37 2 7 79 2 74 6.56e-15 71.2
MS.gene029529.t1 AT5G15800 47.887 71 34 2 7 76 2 70 7.08e-15 72.0
MS.gene029529.t1 AT5G20240 45.333 75 37 2 7 79 2 74 8.37e-15 69.7
MS.gene029529.t1 AT2G03710 30.247 162 72 7 7 131 2 159 8.71e-15 70.5
MS.gene029529.t1 AT5G65050 46.377 69 36 1 9 76 2 70 8.74e-15 70.5
MS.gene029529.t1 AT5G65050 46.377 69 36 1 9 76 2 70 9.65e-15 70.5
MS.gene029529.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.03e-14 70.1
MS.gene029529.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.06e-14 70.5
MS.gene029529.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.43e-14 69.7
MS.gene029529.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.54e-14 70.1
MS.gene029529.t1 AT3G02310 46.479 71 35 2 7 76 2 70 1.66e-14 70.1
MS.gene029529.t1 AT3G54340 29.114 158 86 5 7 162 2 135 1.82e-14 70.5
MS.gene029529.t1 AT5G23260 50.685 73 32 2 7 77 2 72 2.40e-14 70.5
MS.gene029529.t1 AT5G23260 50.685 73 32 2 7 77 18 88 2.49e-14 70.5
MS.gene029529.t1 AT5G23260 50.685 73 32 2 7 77 2 72 2.58e-14 70.1
MS.gene029529.t1 AT5G23260 50.685 73 32 2 7 77 18 88 2.58e-14 70.5
MS.gene029529.t1 AT1G28450 26.901 171 119 2 5 169 4 174 5.36e-14 68.2
MS.gene029529.t1 AT2G03710 41.111 90 44 4 7 89 2 89 7.65e-14 68.9
MS.gene029529.t1 AT2G22630 42.857 70 38 1 7 76 2 69 7.71e-14 68.6
MS.gene029529.t1 AT2G22630 42.857 70 38 1 7 76 2 69 7.71e-14 68.6
MS.gene029529.t1 AT2G03710 41.111 90 44 4 7 89 2 89 8.05e-14 68.9
MS.gene029529.t1 AT3G02310 46.479 71 35 2 7 76 2 70 1.04e-13 68.6
MS.gene029529.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.06e-13 68.6
MS.gene029529.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.07e-13 68.6
MS.gene029529.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.24e-13 68.2
MS.gene029529.t1 AT5G65070 39.130 69 41 1 9 76 2 70 1.30e-13 66.2
MS.gene029529.t1 AT1G71692 44.776 67 36 1 12 77 5 71 1.76e-13 67.4
MS.gene029529.t1 AT1G17310 49.367 79 38 1 8 86 47 123 1.87e-13 67.4
MS.gene029529.t1 AT1G17310 49.367 79 38 1 8 86 58 134 2.44e-13 67.4
MS.gene029529.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.80e-13 66.6
MS.gene029529.t1 AT5G65070 39.130 69 41 1 9 76 2 70 5.77e-13 66.2
MS.gene029529.t1 AT5G65070 39.130 69 41 1 9 76 2 70 7.64e-13 65.5
MS.gene029529.t1 AT1G47760 38.806 67 41 0 9 75 2 68 1.13e-12 64.7
MS.gene029529.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.38e-12 66.6
MS.gene029529.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.45e-12 66.6
MS.gene029529.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.51e-12 66.2
MS.gene029529.t1 AT5G65070 43.860 57 32 0 9 65 2 58 3.81e-12 63.9
MS.gene029529.t1 AT5G65080 39.130 69 41 1 9 76 9 77 1.13e-11 62.0
MS.gene029529.t1 AT4G37435 39.437 71 42 1 9 78 2 72 2.47e-11 60.8
MS.gene029529.t1 AT5G65080 44.444 54 30 0 9 62 9 62 5.21e-11 60.5
MS.gene029529.t1 AT1G69540 24.876 201 117 8 9 197 2 180 6.40e-11 61.6
MS.gene029529.t1 AT2G03060 27.976 168 100 8 9 159 2 165 6.40e-11 61.6
MS.gene029529.t1 AT2G03060 27.976 168 100 8 9 159 2 165 6.40e-11 61.6
MS.gene029529.t1 AT2G03060 27.976 168 100 8 9 159 2 165 6.40e-11 61.6
MS.gene029529.t1 AT1G69540 24.876 201 117 8 9 197 2 180 6.69e-11 61.6
MS.gene029529.t1 AT2G03060 27.976 168 100 8 9 159 2 165 6.98e-11 61.6

Find 51 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATATTGCCGCTGTTT+TGG 0.292316 1.3:-74053461 None:intergenic
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 1.3:+74053840 MS.gene029529:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.3:+74053618 MS.gene029529:CDS
TCACCATGGCTTCAATAATA+TGG 0.324358 1.3:+74053875 MS.gene029529:CDS
ATTTCAGCTTGTTGAGCATT+TGG 0.333852 1.3:-74053780 None:intergenic
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.3:+74053659 MS.gene029529:CDS
TTCATCACCAATCTTCTTCT+CGG 0.352424 1.3:-74053559 None:intergenic
CGGCAATATGCAATTCATTA+AGG 0.356781 1.3:+74053470 MS.gene029529:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.373521 1.3:+74053333 MS.gene029529:CDS
GTCTATGACCGTATCTAGAT+TGG 0.408746 1.3:-74053415 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.3:+74053629 MS.gene029529:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.3:+74053628 MS.gene029529:CDS
TCTATGACCGTATCTAGATT+GGG 0.437088 1.3:-74053414 None:intergenic
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.3:+74053619 MS.gene029529:CDS
AGGAAGCGGAGGCTAAGTTT+TGG 0.459813 1.3:+74053598 MS.gene029529:CDS
GTTGAGCATTTGGCTGATGA+TGG 0.467757 1.3:-74053770 None:intergenic
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.3:-74053630 None:intergenic
ATGGATTCCGAGAAGAAGAT+TGG 0.482353 1.3:+74053552 MS.gene029529:CDS
TCAACTTGAATTATTCAAGA+AGG 0.483881 1.3:+74053653 MS.gene029529:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486430 1.3:-74053828 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1.3:-74053346 None:intergenic
GAGCAATTTGCGCAAGGAAG+CGG 0.502290 1.3:+74053584 MS.gene029529:CDS
CTTTCTTGAAGAGCCCGCTA+TGG 0.502837 1.3:-74053308 None:intergenic
CTTTCTCAAAGCGCCATAGC+GGG 0.513783 1.3:+74053295 MS.gene029529:CDS
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 1.3:+74053662 MS.gene029529:CDS
GCCTTTCTTTCCGCTCGACA+TGG 0.518203 1.3:-74053214 None:intergenic
ACAAAGGGTGCAAAGCTCGC+TGG 0.525634 1.3:-74053331 None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG 0.533373 1.3:+74053213 None:intergenic
ATGATGGAGATAAATGTTCA+AGG 0.538047 1.3:-74053754 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.3:-74053878 None:intergenic
ATCTAGATTGGGGTGACCAA+AGG 0.558412 1.3:-74053403 None:intergenic
ATTGATCCATCAAACAAATG+AGG 0.563188 1.3:-74053846 None:intergenic
GAGGCTGCAATTGCAACATA+GGG 0.578323 1.3:-74053827 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.580084 1.3:+74053369 MS.gene029529:CDS
CAATTTGCGCAAGGAAGCGG+AGG 0.593159 1.3:+74053587 MS.gene029529:CDS
GTGGGATGAGAGAAAGATAA+CGG 0.595828 1.3:-74053437 None:intergenic
TGGTCACCCCAATCTAGATA+CGG 0.596673 1.3:+74053407 MS.gene029529:CDS
TCGAGCGGAAAGAAAGGCCG+AGG 0.597603 1.3:+74053219 MS.gene029529:CDS
TGTATTCTCACCTAGTGGAA+AGG 0.611194 1.3:+74053374 MS.gene029529:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 1.3:-74053384 None:intergenic
GTTCACGCACGTTGGCATTG+CGG 0.624339 1.3:-74053497 None:intergenic
CTATGACCGTATCTAGATTG+GGG 0.625840 1.3:-74053413 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 1.3:-74053347 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.3:-74053873 None:intergenic
TGAACTGAGCAATTTGCGCA+AGG 0.650320 1.3:+74053578 MS.gene029529:CDS
CTCATCCCACCCCAAAACAG+CGG 0.653894 1.3:+74053450 MS.gene029529:CDS
TGTGCTTTAGCCATGTCGAG+CGG 0.654169 1.3:+74053204 None:intergenic
GACTCAAATCAACAACACAA+TGG 0.654879 1.3:+74053533 MS.gene029529:CDS
AGCATTGAGTTCACGCACGT+TGG 0.662077 1.3:-74053505 None:intergenic
ACTTTCTCAAAGCGCCATAG+CGG 0.689169 1.3:+74053294 MS.gene029529:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 1.3:+74053861 MS.gene029529:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCAACTTGAATTATTCAAGA+AGG + chr1.3:74053653-74053672 MS.gene029529:CDS 25.0%
!!! ATAGGGTTTTGAAAAAAATG+TGG - chr1.3:74053813-74053832 None:intergenic 25.0%
ATTGATCCATCAAACAAATG+AGG - chr1.3:74053849-74053868 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG + chr1.3:74053659-74053678 MS.gene029529:CDS 30.0%
! ATGATGGAGATAAATGTTCA+AGG - chr1.3:74053757-74053776 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr1.3:74053248-74053267 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.3:74053387-74053406 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.3:74053881-74053900 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.3:74053876-74053895 None:intergenic 35.0%
CGGCAATATGCAATTCATTA+AGG + chr1.3:74053470-74053489 MS.gene029529:CDS 35.0%
GACTCAAATCAACAACACAA+TGG + chr1.3:74053533-74053552 MS.gene029529:CDS 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.3:74053875-74053894 MS.gene029529:CDS 35.0%
TCTATGACCGTATCTAGATT+GGG - chr1.3:74053417-74053436 None:intergenic 35.0%
TTCATCACCAATCTTCTTCT+CGG - chr1.3:74053562-74053581 None:intergenic 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG + chr1.3:74053662-74053681 MS.gene029529:CDS 35.0%
!! ATTTCAGCTTGTTGAGCATT+TGG - chr1.3:74053783-74053802 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.3:74053387-74053406 MS.gene029529:CDS 35.0%
!!! CGAACACTTCCATTTTTTGT+TGG + chr1.3:74053720-74053739 MS.gene029529:CDS 35.0%
!!! GGGTTTTGAAAAAAATGTGG+TGG - chr1.3:74053810-74053829 None:intergenic 35.0%
ATGGATTCCGAGAAGAAGAT+TGG + chr1.3:74053552-74053571 MS.gene029529:CDS 40.0%
CTATGACCGTATCTAGATTG+GGG - chr1.3:74053416-74053435 None:intergenic 40.0%
GTCTATGACCGTATCTAGAT+TGG - chr1.3:74053418-74053437 None:intergenic 40.0%
GTGGGATGAGAGAAAGATAA+CGG - chr1.3:74053440-74053459 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr1.3:74053374-74053393 MS.gene029529:CDS 40.0%
TTGCAGCCTCATTTGTTTGA+TGG + chr1.3:74053840-74053859 MS.gene029529:CDS 40.0%
! ATTGCATATTGCCGCTGTTT+TGG - chr1.3:74053464-74053483 None:intergenic 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - chr1.3:74053732-74053751 None:intergenic 40.0%
!! TTGCATATTGCCGCTGTTTT+GGG - chr1.3:74053463-74053482 None:intergenic 40.0%
ATCTAGATTGGGGTGACCAA+AGG - chr1.3:74053406-74053425 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG + chr1.3:74053369-74053388 MS.gene029529:CDS 45.0%
GAGGCTGCAATTGCAACATA+GGG - chr1.3:74053830-74053849 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.3:74053773-74053792 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.3:74053633-74053652 None:intergenic 45.0%
TGAACTGAGCAATTTGCGCA+AGG + chr1.3:74053578-74053597 MS.gene029529:CDS 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.3:74053831-74053850 None:intergenic 45.0%
TGGTCACCCCAATCTAGATA+CGG + chr1.3:74053407-74053426 MS.gene029529:CDS 45.0%
! ACTTTCTCAAAGCGCCATAG+CGG + chr1.3:74053294-74053313 MS.gene029529:CDS 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.3:74053629-74053648 MS.gene029529:CDS 45.0%
!! TCTCGATCTTTTGGTGACCT+CGG - chr1.3:74053239-74053258 None:intergenic 45.0%
!! TGCATATTGCCGCTGTTTTG+GGG - chr1.3:74053462-74053481 None:intergenic 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.3:74053611-74053630 MS.gene029529:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.3:74053349-74053368 None:intergenic 50.0%
CTTTCTTGAAGAGCCCGCTA+TGG - chr1.3:74053311-74053330 None:intergenic 50.0%
GAGCAATTTGCGCAAGGAAG+CGG + chr1.3:74053584-74053603 MS.gene029529:CDS 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.3:74053861-74053880 MS.gene029529:CDS 50.0%
! AGCATTGAGTTCACGCACGT+TGG - chr1.3:74053508-74053527 None:intergenic 50.0%
! AGGAAGCGGAGGCTAAGTTT+TGG + chr1.3:74053598-74053617 MS.gene029529:CDS 50.0%
! CTTTCTCAAAGCGCCATAGC+GGG + chr1.3:74053295-74053314 MS.gene029529:CDS 50.0%
!! AAGCGGAGGCTAAGTTTTGG+TGG + chr1.3:74053601-74053620 MS.gene029529:CDS 50.0%
!! AGCGGAGGCTAAGTTTTGGT+GGG + chr1.3:74053602-74053621 MS.gene029529:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.3:74053628-74053647 MS.gene029529:CDS 50.0%
!!! ATATTGCCGCTGTTTTGGGG+TGG - chr1.3:74053459-74053478 None:intergenic 50.0%
!!! TATTGCCGCTGTTTTGGGGT+GGG - chr1.3:74053458-74053477 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr1.3:74053333-74053352 MS.gene029529:CDS 55.0%
CAATTTGCGCAAGGAAGCGG+AGG + chr1.3:74053587-74053606 MS.gene029529:CDS 55.0%
CTCATCCCACCCCAAAACAG+CGG + chr1.3:74053450-74053469 MS.gene029529:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.3:74053350-74053369 None:intergenic 55.0%
GTTCACGCACGTTGGCATTG+CGG - chr1.3:74053500-74053519 None:intergenic 55.0%
! ACAAAGGGTGCAAAGCTCGC+TGG - chr1.3:74053334-74053353 None:intergenic 55.0%
TCGAGCGGAAAGAAAGGCCG+AGG + chr1.3:74053219-74053238 MS.gene029529:CDS 60.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.3:74053619-74053638 MS.gene029529:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.3:74053618-74053637 MS.gene029529:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74053216 74053902 74053216 ID=MS.gene029529
chr1.3 mRNA 74053216 74053902 74053216 ID=MS.gene029529.t1;Parent=MS.gene029529
chr1.3 exon 74053216 74053902 74053216 ID=MS.gene029529.t1.exon1;Parent=MS.gene029529.t1
chr1.3 CDS 74053216 74053902 74053216 ID=cds.MS.gene029529.t1;Parent=MS.gene029529.t1
Gene Sequence

>MS.gene029529

ATGTCGAGCGGAAAGAAAGGCCGAGGTCACCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCATAGCGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTAGATACGGTCATAGACCGTTATCTTTCTCTCATCCCACCCCAAAACAGCGGCAATATGCAATTCATTAAGGCTAACCGCAATGCCAACGTGCGTGAACTCAATGCTCAGCTGACTCAAATCAACAACACAATGGATTCCGAGAAGAAGATTGGTGATGAACTGAGCAATTTGCGCAAGGAAGCGGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCGAACACTTCCATTTTTTGTTGGCAACGCTTCTTCCTTGAACATTTATCTCCATCATCAGCCAAATGCTCAACAAGCTGAAATGTTGCCACCACATTTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene029529.t1

MSSGKKGRGHQKIEMKKMSNESNLQVTFSKRHSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLIPPQNSGNMQFIKANRNANVRELNAQLTQINNTMDSEKKIGDELSNLRKEAEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATRTLPFFVGNASSLNIYLHHQPNAQQAEMLPPHFFQNPMLQLQPHLFDGSMMPHHGFNNMV