AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029530.t1 MTR_1g108510 94.298 228 13 0 1 228 1 228 3.00e-164 452
MS.gene029530.t1 MTR_3g030770 93.860 228 14 0 1 228 1 228 2.31e-162 447
MS.gene029530.t1 MTR_2g093190 86.842 228 30 0 1 228 1 228 1.20e-150 418
MS.gene029530.t1 MTR_1g108580 83.333 228 38 0 1 228 1 228 3.19e-144 402
MS.gene029530.t1 MTR_1g105920 76.471 221 42 2 1 213 1 219 1.00e-117 335
MS.gene029530.t1 MTR_8g043650 74.537 216 47 1 1 208 1 216 5.36e-113 323
MS.gene029530.t1 MTR_2g030740 72.398 221 51 2 1 213 1 219 3.79e-111 318
MS.gene029530.t1 MTR_1g105910 68.936 235 55 3 1 227 1 225 4.83e-111 318
MS.gene029530.t1 MTR_1g012570 71.493 221 53 2 1 213 1 219 1.05e-108 312
MS.gene029530.t1 MTR_3g052920 71.041 221 54 2 1 213 1 219 1.81e-108 311
MS.gene029530.t1 MTR_0121s0080 65.532 235 63 3 1 227 1 225 1.84e-103 299
MS.gene029530.t1 MTR_1g075600 64.255 235 66 3 1 227 1 225 2.87e-100 291
MS.gene029530.t1 MTR_1g077360 62.128 235 71 3 1 227 1 225 5.57e-97 283
MS.gene029530.t1 MTR_5g045560 62.128 235 71 3 1 227 1 225 7.85e-96 280
MS.gene029530.t1 MTR_5g053390 62.128 235 71 3 1 227 1 225 3.08e-95 278
MS.gene029530.t1 MTR_3g052870 67.606 213 56 3 1 213 1 200 4.95e-95 277
MS.gene029530.t1 MTR_1g105905 64.679 218 59 3 18 227 1 208 6.55e-94 274
MS.gene029530.t1 MTR_5g055100 60.851 235 74 3 1 227 1 225 4.13e-93 273
MS.gene029530.t1 MTR_1g106070 73.077 182 41 1 1 174 1 182 1.03e-91 267
MS.gene029530.t1 MTR_2g085280 59.149 235 78 3 1 227 1 225 7.87e-90 265
MS.gene029530.t1 MTR_2g085250 59.912 227 81 2 1 219 1 225 1.64e-89 264
MS.gene029530.t1 MTR_7g062350 61.086 221 67 4 16 227 27 237 4.84e-84 250
MS.gene029530.t1 MTR_0121s0100 83.333 132 22 0 1 132 1 132 1.67e-75 224
MS.gene029530.t1 MTR_3g030780 70.455 132 39 0 1 132 1 132 2.15e-63 194
MS.gene029530.t1 MTR_3g080940 53.714 175 79 1 9 183 9 181 1.28e-61 192
MS.gene029530.t1 MTR_1g075570 56.180 178 56 2 18 187 1 164 1.00e-51 165
MS.gene029530.t1 MTR_8g086290 43.636 165 83 2 5 166 8 165 1.94e-39 134
MS.gene029530.t1 MTR_3g067910 60.194 103 41 0 21 123 2 104 3.31e-38 129
MS.gene029530.t1 MTR_2g105290 40.123 162 93 1 5 166 8 165 3.42e-35 123
MS.gene029530.t1 MTR_7g028448 41.317 167 86 3 5 171 8 162 2.14e-30 110
MS.gene029530.t1 MTR_4g036915 41.317 167 86 3 5 171 8 162 2.14e-30 110
MS.gene029530.t1 MTR_1g108500 55.752 113 27 2 8 118 94 185 1.15e-29 113
MS.gene029530.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 2.67e-26 97.4
MS.gene029530.t1 MTR_4g127140 38.286 175 88 4 5 166 8 175 1.31e-25 99.0
MS.gene029530.t1 MTR_1g063160 53.247 77 36 0 9 85 2 78 5.19e-24 94.7
MS.gene029530.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 3.49e-23 92.0
MS.gene029530.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 3.74e-23 92.4
MS.gene029530.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 5.27e-23 92.0
MS.gene029530.t1 MTR_3g067915 46.809 94 50 0 33 126 3 96 2.61e-22 87.8
MS.gene029530.t1 MTR_4g131030 35.294 136 73 2 9 129 2 137 3.86e-22 90.5
MS.gene029530.t1 MTR_8g046350 39.231 130 71 4 9 135 2 126 6.08e-22 89.0
MS.gene029530.t1 MTR_8g051580 39.683 126 60 3 9 133 2 112 1.10e-21 88.6
MS.gene029530.t1 MTR_3g067870 67.213 61 20 0 16 76 83 143 3.33e-21 86.7
MS.gene029530.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 1.77e-20 85.5
MS.gene029530.t1 MTR_3g005530 54.412 68 31 0 9 76 2 69 1.91e-20 86.3
MS.gene029530.t1 MTR_4g094632 38.679 106 63 1 9 114 2 105 6.49e-20 83.2
MS.gene029530.t1 MTR_4g102530 55.224 67 30 0 10 76 3 69 1.32e-19 83.6
MS.gene029530.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 4.03e-19 83.2
MS.gene029530.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 4.46e-19 82.8
MS.gene029530.t1 MTR_8g033270 49.367 79 38 1 9 85 2 80 4.93e-19 83.2
MS.gene029530.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 7.43e-19 82.4
MS.gene029530.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 1.19e-18 80.9
MS.gene029530.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 1.72e-18 81.6
MS.gene029530.t1 MTR_3g102570 44.118 102 54 3 9 109 2 101 2.33e-18 82.4
MS.gene029530.t1 MTR_4g109830 49.275 69 34 1 9 76 2 70 2.75e-18 80.9
MS.gene029530.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 3.15e-18 80.5
MS.gene029530.t1 MTR_0003s0590 52.941 68 32 0 9 76 2 69 3.17e-18 81.3
MS.gene029530.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 3.29e-18 80.5
MS.gene029530.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 4.43e-18 80.5
MS.gene029530.t1 MTR_2g009890 50.000 68 34 0 9 76 2 69 4.67e-18 80.9
MS.gene029530.t1 MTR_7g075870 48.148 81 38 1 10 86 3 83 4.90e-18 79.7
MS.gene029530.t1 MTR_8g033220 52.174 69 33 0 10 78 3 71 5.92e-18 79.7
MS.gene029530.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 6.30e-18 80.1
MS.gene029530.t1 MTR_8g033220 52.174 69 33 0 10 78 3 71 6.99e-18 79.7
MS.gene029530.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 1.01e-17 79.7
MS.gene029530.t1 MTR_7g016600 52.113 71 31 2 7 76 2 70 3.38e-17 78.2
MS.gene029530.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 3.95e-17 78.2
MS.gene029530.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.34e-17 77.4
MS.gene029530.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.35e-17 77.8
MS.gene029530.t1 MTR_8g022970 34.641 153 97 3 8 159 17 167 6.95e-17 75.9
MS.gene029530.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 7.52e-17 77.0
MS.gene029530.t1 MTR_7g075870 47.561 82 38 2 10 86 3 84 8.34e-17 76.3
MS.gene029530.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 1.60e-16 73.2
MS.gene029530.t1 MTR_4g084740 49.367 79 38 2 9 86 2 79 1.77e-16 77.4
MS.gene029530.t1 MTR_2g461710 57.143 56 24 0 9 64 2 57 2.20e-16 71.2
MS.gene029530.t1 MTR_3g088615 48.571 70 34 1 9 76 2 71 2.36e-16 74.3
MS.gene029530.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 4.08e-16 75.1
MS.gene029530.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 4.53e-16 75.1
MS.gene029530.t1 MTR_5g046790 44.928 69 37 1 9 76 2 70 5.06e-16 74.3
MS.gene029530.t1 MTR_1g029670 47.143 70 35 1 9 76 2 71 1.14e-15 72.8
MS.gene029530.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 1.96e-15 73.2
MS.gene029530.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.01e-15 73.2
MS.gene029530.t1 MTR_7g075850 43.902 82 44 1 9 88 2 83 2.13e-15 73.2
MS.gene029530.t1 MTR_3g084980 57.143 56 24 0 9 64 2 57 2.55e-15 72.8
MS.gene029530.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.55e-15 72.8
MS.gene029530.t1 MTR_4g109810 53.571 56 26 0 9 64 2 57 3.86e-15 72.4
MS.gene029530.t1 MTR_4g108720 30.952 168 102 6 9 164 2 167 9.50e-15 72.4
MS.gene029530.t1 MTR_3g113030 33.333 159 85 6 9 163 2 143 1.19e-14 70.9
MS.gene029530.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.61e-14 66.2
MS.gene029530.t1 MTR_3g109930 32.847 137 82 2 27 159 20 150 5.71e-14 67.8
MS.gene029530.t1 MTR_3g437790 34.000 150 68 6 26 159 30 164 8.86e-14 67.8
MS.gene029530.t1 MTR_1g041615 36.449 107 59 2 20 125 17 115 1.67e-13 65.9
MS.gene029530.t1 MTR_4g036050 27.650 217 125 8 9 209 2 202 7.07e-13 65.5
MS.gene029530.t1 MTR_4g036050 27.488 211 119 9 9 209 2 188 1.73e-12 64.3
MS.gene029530.t1 MTR_4g093030 39.130 92 40 2 9 84 2 93 1.87e-12 63.5
MS.gene029530.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.04e-12 63.5
MS.gene029530.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.08e-12 63.9
MS.gene029530.t1 MTR_4g051538 30.247 162 100 3 5 166 5 153 2.18e-12 64.7
MS.gene029530.t1 MTR_5g041650 39.189 74 43 1 9 80 39 112 9.52e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029530.t1 AT5G60440 54.348 184 78 3 5 182 3 186 1.44e-59 189
MS.gene029530.t1 AT2G24840 45.455 198 81 6 9 184 63 255 1.99e-44 150
MS.gene029530.t1 AT4G36590 43.850 187 91 5 5 179 3 187 1.99e-40 139
MS.gene029530.t1 AT1G01530 43.478 184 96 4 4 183 2 181 1.06e-38 134
MS.gene029530.t1 AT1G65360 41.758 182 99 4 5 181 3 182 2.66e-38 133
MS.gene029530.t1 AT3G04100 32.105 190 117 3 2 183 7 192 1.76e-26 102
MS.gene029530.t1 AT2G34440 36.242 149 91 3 9 156 2 147 6.86e-26 99.4
MS.gene029530.t1 AT1G72350 34.682 173 73 5 9 174 43 182 1.14e-23 95.1
MS.gene029530.t1 AT3G66656 38.583 127 74 1 9 131 2 128 1.81e-23 93.2
MS.gene029530.t1 AT4G09960 40.000 135 73 4 9 137 2 134 1.24e-21 89.4
MS.gene029530.t1 AT4G09960 39.416 137 75 4 9 139 2 136 1.84e-21 89.4
MS.gene029530.t1 AT4G09960 39.416 137 75 4 9 139 3 137 1.86e-21 89.4
MS.gene029530.t1 AT4G09960 40.000 135 73 4 9 137 12 144 2.38e-21 89.4
MS.gene029530.t1 AT4G09960 39.416 137 75 4 9 139 28 162 3.63e-21 89.0
MS.gene029530.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.46e-20 85.1
MS.gene029530.t1 AT4G09960 40.152 132 71 4 9 134 97 226 1.57e-20 88.6
MS.gene029530.t1 AT1G28460 30.769 169 112 3 5 169 4 171 1.65e-20 85.5
MS.gene029530.t1 AT1G29962 29.825 171 114 2 5 169 4 174 2.41e-20 85.1
MS.gene029530.t1 AT2G45650 54.412 68 31 0 9 76 2 69 3.36e-20 86.3
MS.gene029530.t1 AT2G45660 35.404 161 86 5 10 160 3 155 5.78e-20 85.1
MS.gene029530.t1 AT4G24540 36.486 148 77 4 9 156 2 132 1.67e-19 84.0
MS.gene029530.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.75e-19 82.8
MS.gene029530.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.63e-19 83.2
MS.gene029530.t1 AT5G51870 54.167 72 33 0 5 76 21 92 3.58e-19 82.4
MS.gene029530.t1 AT3G57230 48.529 68 35 0 9 76 2 69 3.74e-19 80.9
MS.gene029530.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.43e-19 83.2
MS.gene029530.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.43e-19 83.2
MS.gene029530.t1 AT5G10140 45.556 90 44 2 9 97 2 87 4.66e-19 81.3
MS.gene029530.t1 AT5G51870 56.716 67 29 0 10 76 3 69 4.78e-19 82.4
MS.gene029530.t1 AT5G51870 56.716 67 29 0 10 76 13 79 6.25e-19 82.4
MS.gene029530.t1 AT5G10140 45.556 90 44 2 9 97 2 87 1.06e-18 80.9
MS.gene029530.t1 AT5G10140 45.556 90 44 2 9 97 2 87 1.07e-18 80.9
MS.gene029530.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.15e-18 81.6
MS.gene029530.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.23e-18 81.3
MS.gene029530.t1 AT5G10140 45.556 90 44 2 9 97 2 87 1.44e-18 80.9
MS.gene029530.t1 AT4G18960 41.000 100 49 1 9 108 18 107 1.54e-18 82.0
MS.gene029530.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.59e-18 81.6
MS.gene029530.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.59e-18 81.6
MS.gene029530.t1 AT5G13790 54.412 68 31 0 9 76 2 69 1.60e-18 82.0
MS.gene029530.t1 AT5G13790 54.412 68 31 0 9 76 2 69 1.67e-18 82.0
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.78e-18 79.7
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.78e-18 79.7
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.78e-18 79.7
MS.gene029530.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.96e-18 80.1
MS.gene029530.t1 AT3G57390 51.471 68 33 0 9 76 2 69 2.02e-18 81.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.11e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.11e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.11e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.11e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.11e-18 79.3
MS.gene029530.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.16e-18 81.3
MS.gene029530.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.18e-18 81.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.18e-18 77.8
MS.gene029530.t1 AT4G22950 45.455 77 42 0 10 86 3 79 3.03e-18 79.3
MS.gene029530.t1 AT3G58780 49.333 75 36 1 2 76 12 84 4.61e-18 80.5
MS.gene029530.t1 AT3G57390 51.471 68 33 0 9 76 2 69 4.80e-18 80.5
MS.gene029530.t1 AT3G58780 49.333 75 36 1 2 76 18 90 5.78e-18 80.5
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.45e-18 79.0
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.45e-18 79.0
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene029530.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene029530.t1 AT3G58780 49.333 75 36 1 2 76 12 84 7.94e-18 80.5
MS.gene029530.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.59e-17 78.6
MS.gene029530.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.59e-17 78.6
MS.gene029530.t1 AT3G61120 45.122 82 44 1 9 89 2 83 1.89e-17 79.0
MS.gene029530.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.27e-17 77.8
MS.gene029530.t1 AT3G30260 47.826 69 35 1 9 76 2 70 2.28e-17 78.6
MS.gene029530.t1 AT1G26310 50.704 71 32 2 7 76 2 70 2.30e-17 79.0
MS.gene029530.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.77e-17 77.8
MS.gene029530.t1 AT2G14210 47.826 69 35 1 9 76 2 70 4.96e-17 77.4
MS.gene029530.t1 AT5G60910 49.275 69 34 1 9 76 2 70 5.35e-17 77.4
MS.gene029530.t1 AT2G14210 47.826 69 35 1 9 76 2 70 6.25e-17 77.4
MS.gene029530.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.71e-17 75.9
MS.gene029530.t1 AT4G11880 51.471 68 32 1 10 76 3 70 8.26e-17 75.9
MS.gene029530.t1 AT4G11880 51.471 68 32 1 10 76 3 70 8.26e-17 75.9
MS.gene029530.t1 AT1G69120 47.887 71 34 2 7 76 2 70 8.53e-17 77.0
MS.gene029530.t1 AT5G15800 50.725 69 33 1 9 76 2 70 8.92e-17 77.0
MS.gene029530.t1 AT5G23260 46.739 92 43 2 5 90 14 105 1.03e-16 77.0
MS.gene029530.t1 AT1G77980 51.389 72 34 1 9 79 2 73 1.08e-16 77.8
MS.gene029530.t1 AT2G22540 51.471 68 28 1 9 76 2 64 1.13e-16 76.6
MS.gene029530.t1 AT5G20240 47.945 73 36 1 9 79 2 74 1.23e-16 74.3
MS.gene029530.t1 AT5G23260 46.739 92 43 2 5 90 14 105 1.23e-16 77.0
MS.gene029530.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.47e-16 76.6
MS.gene029530.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.75e-16 76.3
MS.gene029530.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.75e-16 76.3
MS.gene029530.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.75e-16 76.3
MS.gene029530.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.75e-16 76.3
MS.gene029530.t1 AT5G20240 47.945 73 36 1 9 79 2 74 1.78e-16 75.5
MS.gene029530.t1 AT4G11880 51.471 68 32 1 10 76 3 70 1.88e-16 75.5
MS.gene029530.t1 AT4G11880 51.471 68 32 1 10 76 3 70 1.88e-16 75.5
MS.gene029530.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.96e-16 75.1
MS.gene029530.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.07e-16 74.7
MS.gene029530.t1 AT1G22130 48.750 80 39 2 9 87 2 80 2.17e-16 77.0
MS.gene029530.t1 AT5G23260 47.727 88 40 2 9 90 2 89 2.45e-16 75.9
MS.gene029530.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.50e-16 74.3
MS.gene029530.t1 AT1G69120 46.377 69 36 1 9 76 2 70 2.56e-16 75.9
MS.gene029530.t1 AT5G23260 47.727 88 40 2 9 90 2 89 2.62e-16 75.5
MS.gene029530.t1 AT5G65060 47.826 69 35 1 9 76 2 70 3.91e-16 74.3
MS.gene029530.t1 AT3G54340 35.252 139 74 6 9 133 2 138 4.27e-16 75.1
MS.gene029530.t1 AT3G02310 49.275 69 34 1 9 76 2 70 5.03e-16 73.9
MS.gene029530.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.95e-16 73.6
MS.gene029530.t1 AT5G65060 47.826 69 35 1 9 76 2 70 6.83e-16 73.6
MS.gene029530.t1 AT2G03710 48.571 70 34 2 9 76 2 71 9.74e-16 73.2
MS.gene029530.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.02e-15 73.9
MS.gene029530.t1 AT1G28450 29.651 172 113 5 5 169 4 174 1.03e-15 72.8
MS.gene029530.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.51e-15 73.9
MS.gene029530.t1 AT3G02310 49.275 69 34 1 9 76 2 70 1.88e-15 73.6
MS.gene029530.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.21e-15 72.8
MS.gene029530.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.21e-15 72.8
MS.gene029530.t1 AT5G65070 31.915 141 78 4 9 136 2 137 2.63e-15 70.9
MS.gene029530.t1 AT1G17310 35.119 168 69 5 8 171 47 178 2.69e-15 72.4
MS.gene029530.t1 AT1G17310 35.119 168 69 5 8 171 58 189 3.10e-15 72.4
MS.gene029530.t1 AT1G24260 47.826 69 35 1 9 76 2 70 3.11e-15 72.8
MS.gene029530.t1 AT1G24260 47.826 69 35 1 9 76 2 70 3.15e-15 72.8
MS.gene029530.t1 AT1G24260 47.826 69 35 1 9 76 2 70 3.24e-15 72.8
MS.gene029530.t1 AT2G03710 48.571 70 34 2 9 76 2 71 4.03e-15 72.8
MS.gene029530.t1 AT2G03710 48.571 70 34 2 9 76 2 71 4.30e-15 72.8
MS.gene029530.t1 AT5G65070 43.478 69 38 1 9 76 2 70 5.27e-15 71.2
MS.gene029530.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.29e-14 70.9
MS.gene029530.t1 AT1G71692 44.928 69 37 1 10 77 3 71 1.32e-14 70.5
MS.gene029530.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.58e-14 70.1
MS.gene029530.t1 AT1G47760 41.791 67 39 0 9 75 2 68 3.19e-14 68.9
MS.gene029530.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.60e-14 70.5
MS.gene029530.t1 AT1G18750 41.333 75 42 1 9 81 2 76 7.22e-14 70.5
MS.gene029530.t1 AT1G18750 41.333 75 42 1 9 81 2 76 7.40e-14 70.1
MS.gene029530.t1 AT5G65070 49.123 57 29 0 9 65 2 58 9.24e-14 68.6
MS.gene029530.t1 AT5G65080 42.029 69 39 1 9 76 9 77 3.44e-13 66.2
MS.gene029530.t1 AT4G37435 42.254 71 40 1 9 78 2 72 1.35e-12 64.3
MS.gene029530.t1 AT5G65080 48.148 54 28 0 9 62 9 62 1.69e-12 64.7
MS.gene029530.t1 AT5G49420 38.043 92 50 2 5 89 3 94 2.72e-12 65.5
MS.gene029530.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene029530.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene029530.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene029530.t1 AT5G49490 38.947 95 50 3 5 92 41 134 4.60e-12 64.3
MS.gene029530.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.78e-12 65.1
MS.gene029530.t1 AT1G77080 49.275 69 34 1 9 76 2 70 5.41e-12 62.8
MS.gene029530.t1 AT1G77080 49.275 69 34 1 9 76 2 70 6.48e-12 62.4
MS.gene029530.t1 AT1G69540 41.892 74 42 1 9 81 2 75 8.53e-12 63.9
MS.gene029530.t1 AT1G69540 40.789 76 44 1 9 83 2 77 1.12e-11 63.9
MS.gene029530.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.50e-11 61.6
MS.gene029530.t1 AT1G46408 44.737 76 38 2 7 78 2 77 2.83e-11 62.0
MS.gene029530.t1 AT1G77080 49.275 69 34 1 9 76 2 70 4.33e-11 60.8
MS.gene029530.t1 AT2G26320 35.106 94 52 2 5 96 14 100 6.35e-11 58.2

Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.264625 1.3:+74049922 MS.gene029530:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.3:+74049887 MS.gene029530:CDS
ATTTCAGATTGTTGAGCATT+TGG 0.323276 1.3:-74050049 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 1.3:+74050144 MS.gene029530:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 1.3:-74049553 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.375394 1.3:-74049828 None:intergenic
AGGAAACGGAGGCTAGGTTT+TGG 0.396742 1.3:+74049867 MS.gene029530:CDS
GTCTATGACCGTATCAAGAT+TGG 0.398383 1.3:-74049684 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.401409 1.3:-74049856 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.3:+74049898 MS.gene029530:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.3:+74049897 MS.gene029530:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.3:+74049888 MS.gene029530:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1.3:-74049683 None:intergenic
AGTGAACTTTGCACCCTTTG+TGG 0.452717 1.3:+74049602 MS.gene029530:CDS
GCCTTTCTTTCCGCTTGACA+TGG 0.456342 1.3:-74049483 None:intergenic
CATAGACCGCTATCTTTCTC+TGG 0.460785 1.3:+74049700 MS.gene029530:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.460994 1.3:+74049821 MS.gene029530:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.469408 1.3:-74050097 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.477675 1.3:-74050039 None:intergenic
TTGCAGCCTCATTTATCTGA+TGG 0.480486 1.3:+74050109 MS.gene029530:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.3:-74049899 None:intergenic
GAGCCATTTGCTCAAGGAAA+CGG 0.489556 1.3:+74049853 MS.gene029530:CDS
AGCAGCATCTGCACCACAAA+GGG 0.490134 1.3:-74049615 None:intergenic
GAAGCATTGCCAACAAAAGA+TGG 0.491422 1.3:-74049998 None:intergenic
ACAAAGGGTGCAAAGTTCAC+TGG 0.510700 1.3:-74049600 None:intergenic
GCCATGTCAAGCGGAAAGAA+AGG 0.525443 1.3:+74049482 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.3:-74050147 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.3:+74049676 MS.gene029530:CDS
CTCATTGTATTCTCACCTAG+TGG 0.573768 1.3:+74049638 MS.gene029530:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.3:-74049672 None:intergenic
TGCTCAAGGAAACGGAGGCT+AGG 0.582635 1.3:+74049861 MS.gene029530:CDS
ATTGATCCATCAGATAAATG+AGG 0.593185 1.3:-74050115 None:intergenic
AGAATTGAGTTCACGAACGT+TGG 0.593330 1.3:-74049774 None:intergenic
TGAGCTGAGCCATTTGCTCA+AGG 0.597593 1.3:+74049847 MS.gene029530:CDS
CGACACCATGCAACTCCTTG+AGG 0.608936 1.3:+74049739 MS.gene029530:CDS
TGTATTCTCACCTAGTGGAA+AGG 0.611194 1.3:+74049643 MS.gene029530:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.3:-74050023 None:intergenic
TCAAGCGGAAAGAAAGGCCG+AGG 0.614100 1.3:+74049488 MS.gene029530:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 1.3:-74049653 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 1.3:+74049563 MS.gene029530:CDS
TGTGCGTCAGCCATGTCAAG+CGG 0.628268 1.3:+74049473 None:intergenic
TGGCATTGCAGTGAGCCTCA+AGG 0.629194 1.3:-74049754 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.637538 1.3:-74049616 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1.3:-74049682 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.3:-74050142 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1.3:+74049802 MS.gene029530:CDS
GTGAGCCTCAAGGAGTTGCA+TGG 0.673506 1.3:-74049744 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.676667 1.3:+74049856 MS.gene029530:CDS
GTGGTACCAGAGAAAGATAG+CGG 0.703250 1.3:-74049706 None:intergenic
GGATCAATGATGCCTCACCA+TGG 0.734402 1.3:+74050130 MS.gene029530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.3:74049922-74049941 MS.gene029530:CDS 20.0%
!!! ATAGGATTTTGAAAAAAATG+TGG - chr1.3:74050082-74050101 None:intergenic 20.0%
!! TGAATTATTCAAAAAGGCAT+TGG + chr1.3:74049928-74049947 MS.gene029530:CDS 25.0%
ATTGATCCATCAGATAAATG+AGG - chr1.3:74050118-74050137 None:intergenic 30.0%
ATTTCAGATTGTTGAGCATT+TGG - chr1.3:74050052-74050071 None:intergenic 30.0%
!! ATTATTCAAAAAGGCATTGG+AGG + chr1.3:74049931-74049950 MS.gene029530:CDS 30.0%
!! GGATTTTGAAAAAAATGTGG+TGG - chr1.3:74050079-74050098 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr1.3:74049517-74049536 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.3:74049656-74049675 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.3:74050150-74050169 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.3:74050145-74050164 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.3:74050144-74050163 MS.gene029530:CDS 35.0%
TCTATGACCGTATCAAGATT+GGG - chr1.3:74049686-74049705 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.3:74050026-74050045 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.3:74049656-74049675 MS.gene029530:CDS 35.0%
AGAATTGAGTTCACGAACGT+TGG - chr1.3:74049777-74049796 None:intergenic 40.0%
CTATGACCGTATCAAGATTG+GGG - chr1.3:74049685-74049704 None:intergenic 40.0%
CTCATTGTATTCTCACCTAG+TGG + chr1.3:74049638-74049657 MS.gene029530:CDS 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.3:74049687-74049706 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr1.3:74049643-74049662 MS.gene029530:CDS 40.0%
TTGCAGCCTCATTTATCTGA+TGG + chr1.3:74050109-74050128 MS.gene029530:CDS 40.0%
! CGAACTCTTCCATCTTTTGT+TGG + chr1.3:74049989-74050008 MS.gene029530:CDS 40.0%
!! GAAGCATTGCCAACAAAAGA+TGG - chr1.3:74050001-74050020 None:intergenic 40.0%
AGTGAACTTTGCACCCTTTG+TGG + chr1.3:74049602-74049621 MS.gene029530:CDS 45.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.3:74049675-74049694 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG + chr1.3:74049700-74049719 MS.gene029530:CDS 45.0%
CTCATCGCCAATCTTCTTCT+CGG - chr1.3:74049831-74049850 None:intergenic 45.0%
GACTCAAATCAACAACACGC+TGG + chr1.3:74049802-74049821 MS.gene029530:CDS 45.0%
GAGCCATTTGCTCAAGGAAA+CGG + chr1.3:74049853-74049872 MS.gene029530:CDS 45.0%
GTGGTACCAGAGAAAGATAG+CGG - chr1.3:74049709-74049728 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.3:74050042-74050061 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.3:74049902-74049921 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.3:74050100-74050119 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.3:74049676-74049695 MS.gene029530:CDS 45.0%
! ACAAAGGGTGCAAAGTTCAC+TGG - chr1.3:74049603-74049622 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG + chr1.3:74049563-74049582 MS.gene029530:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG - chr1.3:74049556-74049575 None:intergenic 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.3:74049898-74049917 MS.gene029530:CDS 45.0%
!!! ATGGTGTCGTTGTTTTGTGG+TGG - chr1.3:74049728-74049747 None:intergenic 45.0%
!!! TGCATGGTGTCGTTGTTTTG+TGG - chr1.3:74049731-74049750 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.3:74049618-74049637 None:intergenic 50.0%
CCATTTGCTCAAGGAAACGG+AGG + chr1.3:74049856-74049875 MS.gene029530:CDS 50.0%
CCTCCGTTTCCTTGAGCAAA+TGG - chr1.3:74049859-74049878 None:intergenic 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + chr1.3:74049821-74049840 MS.gene029530:CDS 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.3:74050130-74050149 MS.gene029530:CDS 50.0%
TGAGCTGAGCCATTTGCTCA+AGG + chr1.3:74049847-74049866 MS.gene029530:CDS 50.0%
! AGGAAACGGAGGCTAGGTTT+TGG + chr1.3:74049867-74049886 MS.gene029530:CDS 50.0%
! TCTCGATCTTTTGGCGACCT+CGG - chr1.3:74049508-74049527 None:intergenic 50.0%
!! AAACGGAGGCTAGGTTTTGG+TGG + chr1.3:74049870-74049889 MS.gene029530:CDS 50.0%
!! AACGGAGGCTAGGTTTTGGT+GGG + chr1.3:74049871-74049890 MS.gene029530:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.3:74049897-74049916 MS.gene029530:CDS 50.0%
!!! TAGGTTTTGGTGGGCTTGTC+CGG + chr1.3:74049880-74049899 MS.gene029530:CDS 50.0%
CGACACCATGCAACTCCTTG+AGG + chr1.3:74049739-74049758 MS.gene029530:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.3:74049619-74049638 None:intergenic 55.0%
GTGAGCCTCAAGGAGTTGCA+TGG - chr1.3:74049747-74049766 None:intergenic 55.0%
TCAAGCGGAAAGAAAGGCCG+AGG + chr1.3:74049488-74049507 MS.gene029530:CDS 55.0%
TGCTCAAGGAAACGGAGGCT+AGG + chr1.3:74049861-74049880 MS.gene029530:CDS 55.0%
TGGCATTGCAGTGAGCCTCA+AGG - chr1.3:74049757-74049776 None:intergenic 55.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.3:74049888-74049907 MS.gene029530:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.3:74049887-74049906 MS.gene029530:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74049485 74050171 74049485 ID=MS.gene029530
chr1.3 mRNA 74049485 74050171 74049485 ID=MS.gene029530.t1;Parent=MS.gene029530
chr1.3 exon 74049485 74050171 74049485 ID=MS.gene029530.t1.exon1;Parent=MS.gene029530.t1
chr1.3 CDS 74049485 74050171 74049485 ID=cds.MS.gene029530.t1;Parent=MS.gene029530.t1
Gene Sequence

>MS.gene029530

ATGTCAAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCCAGTGAACTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCATTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGACACCATGCAACTCCTTGAGGCTCACTGCAATGCCAACGTTCGTGAACTCAATTCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGCTGAGCCATTTGCTCAAGGAAACGGAGGCTAGGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCATTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCGAACTCTTCCATCTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATGTTGCCACCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTATCTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene029530.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALIVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNDTMQLLEAHCNANVRELNSQMTQINNTLDAEKKIGDELSHLLKETEARFWWACPVDGMNRDQLELFKKALEELKKLLIQHATTRTLPSFVGNASSSNIYLHHQPNAQQSEMLPPHFFQNPMLQLQPHLSDGSMMPHHGFNNMV