Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029540.t1 | XP_003592556.1 | 94 | 266 | 16 | 0 | 1 | 266 | 1 | 266 | 1.30E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029540.t1 | Q1LVZ2 | 35.5 | 93 | 53 | 3 | 39 | 125 | 41 | 132 | 8.9e-09 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029540.t1 | G7IAT6 | 94.0 | 266 | 16 | 0 | 1 | 266 | 1 | 266 | 9.1e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056800 | MS.gene029540 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029540.t1 | MTR_1g108490 | 95.489 | 266 | 12 | 0 | 1 | 266 | 1 | 266 | 0.0 | 531 |
| MS.gene029540.t1 | MTR_1g108490 | 96.135 | 207 | 8 | 0 | 1 | 207 | 1 | 207 | 7.18e-151 | 419 |
| MS.gene029540.t1 | MTR_7g082950 | 46.602 | 206 | 97 | 5 | 57 | 258 | 14 | 210 | 5.97e-66 | 204 |
| MS.gene029540.t1 | MTR_8g467220 | 39.919 | 248 | 138 | 3 | 1 | 238 | 1 | 247 | 1.54e-55 | 180 |
| MS.gene029540.t1 | MTR_7g082950 | 53.548 | 155 | 59 | 5 | 57 | 207 | 14 | 159 | 2.16e-52 | 168 |
| MS.gene029540.t1 | MTR_5g040650 | 44.920 | 187 | 99 | 3 | 55 | 238 | 66 | 251 | 1.65e-48 | 162 |
| MS.gene029540.t1 | MTR_5g040650 | 43.784 | 185 | 101 | 2 | 55 | 236 | 66 | 250 | 2.47e-48 | 161 |
| MS.gene029540.t1 | MTR_7g109460 | 35.874 | 223 | 130 | 4 | 45 | 264 | 6 | 218 | 1.91e-47 | 157 |
| MS.gene029540.t1 | MTR_7g109460 | 41.566 | 166 | 87 | 3 | 45 | 207 | 6 | 164 | 8.46e-40 | 136 |
| MS.gene029540.t1 | MTR_1g087150 | 38.636 | 220 | 125 | 4 | 45 | 255 | 6 | 224 | 9.36e-38 | 133 |
| MS.gene029540.t1 | MTR_1g087150 | 37.563 | 197 | 118 | 2 | 45 | 236 | 6 | 202 | 9.71e-35 | 124 |
| MS.gene029540.t1 | MTR_7g010610 | 55.224 | 67 | 28 | 1 | 54 | 118 | 30 | 96 | 4.43e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029540.t1 | AT2G01275 | 58.120 | 234 | 92 | 2 | 1 | 234 | 1 | 228 | 7.41e-96 | 282 |
| MS.gene029540.t1 | AT2G01275 | 58.120 | 234 | 92 | 2 | 1 | 234 | 1 | 228 | 7.41e-96 | 282 |
| MS.gene029540.t1 | AT2G01275 | 58.120 | 234 | 92 | 2 | 1 | 234 | 1 | 228 | 7.41e-96 | 282 |
| MS.gene029540.t1 | AT2G01275 | 58.120 | 234 | 92 | 2 | 1 | 234 | 27 | 254 | 9.03e-96 | 283 |
| MS.gene029540.t1 | AT2G01275 | 58.120 | 234 | 92 | 2 | 1 | 234 | 27 | 254 | 9.03e-96 | 283 |
| MS.gene029540.t1 | AT5G38070 | 41.897 | 253 | 129 | 4 | 1 | 250 | 1 | 238 | 1.87e-59 | 189 |
| MS.gene029540.t1 | AT2G02960 | 45.109 | 184 | 98 | 2 | 57 | 238 | 41 | 223 | 6.46e-51 | 168 |
| MS.gene029540.t1 | AT2G02960 | 45.109 | 184 | 98 | 2 | 57 | 238 | 41 | 223 | 6.46e-51 | 168 |
| MS.gene029540.t1 | AT2G02960 | 45.109 | 184 | 98 | 2 | 57 | 238 | 41 | 223 | 6.46e-51 | 168 |
| MS.gene029540.t1 | AT2G02960 | 45.109 | 184 | 98 | 2 | 57 | 238 | 41 | 223 | 6.46e-51 | 168 |
| MS.gene029540.t1 | AT2G02960 | 45.109 | 184 | 98 | 2 | 57 | 238 | 41 | 223 | 6.46e-51 | 168 |
| MS.gene029540.t1 | AT3G47550 | 41.200 | 250 | 133 | 6 | 1 | 238 | 1 | 248 | 1.45e-47 | 160 |
| MS.gene029540.t1 | AT3G47550 | 41.200 | 250 | 133 | 6 | 1 | 238 | 1 | 248 | 1.45e-47 | 160 |
| MS.gene029540.t1 | AT1G14260 | 43.455 | 191 | 104 | 2 | 57 | 245 | 55 | 243 | 5.26e-46 | 155 |
| MS.gene029540.t1 | AT1G14260 | 43.455 | 191 | 104 | 2 | 57 | 245 | 55 | 243 | 5.26e-46 | 155 |
| MS.gene029540.t1 | AT1G14260 | 43.455 | 191 | 104 | 2 | 57 | 245 | 55 | 243 | 5.26e-46 | 155 |
| MS.gene029540.t1 | AT3G47550 | 40.249 | 241 | 131 | 5 | 1 | 229 | 1 | 240 | 6.26e-45 | 152 |
| MS.gene029540.t1 | AT2G02960 | 50.000 | 134 | 67 | 0 | 57 | 190 | 41 | 174 | 1.15e-39 | 139 |
| MS.gene029540.t1 | AT5G62460 | 44.809 | 183 | 96 | 3 | 58 | 236 | 90 | 271 | 2.71e-39 | 139 |
| MS.gene029540.t1 | AT5G62460 | 44.809 | 183 | 96 | 3 | 58 | 236 | 77 | 258 | 2.95e-39 | 139 |
| MS.gene029540.t1 | AT5G62460 | 44.809 | 183 | 96 | 3 | 58 | 236 | 77 | 258 | 2.95e-39 | 139 |
| MS.gene029540.t1 | AT1G02610 | 35.122 | 205 | 128 | 3 | 59 | 262 | 20 | 220 | 2.54e-38 | 134 |
| MS.gene029540.t1 | AT4G02075 | 37.811 | 201 | 114 | 3 | 42 | 242 | 3 | 192 | 2.84e-38 | 134 |
| MS.gene029540.t1 | AT3G47550 | 40.860 | 186 | 98 | 4 | 1 | 175 | 1 | 185 | 2.93e-38 | 134 |
| MS.gene029540.t1 | AT1G02610 | 36.932 | 176 | 107 | 2 | 59 | 234 | 20 | 191 | 1.12e-37 | 132 |
| MS.gene029540.t1 | AT4G02075 | 38.191 | 199 | 112 | 3 | 42 | 240 | 3 | 190 | 1.17e-37 | 132 |
| MS.gene029540.t1 | AT4G02075 | 40.588 | 170 | 89 | 4 | 42 | 210 | 3 | 161 | 7.45e-29 | 108 |
Find 61 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGTATTCCAATGAGTTTC+AGG | 0.200352 | 1.3:+73958873 | MS.gene029540:CDS |
| CTGTTTATATCAGGGGAAAT+TGG | 0.204539 | 1.3:+73958989 | MS.gene029540:intron |
| TTTGATAGGTGTTATTATTT+CGG | 0.280078 | 1.3:+73959400 | MS.gene029540:intron |
| AAGATGGATATTAAATGTTC+CGG | 0.324167 | 1.3:+73957723 | MS.gene029540:CDS |
| CCTGCATTCTGCCAGCTTCC+CGG | 0.354273 | 1.3:-73957742 | None:intergenic |
| TCAATATTCAACCTCTTCTT+CGG | 0.364674 | 1.3:+73959095 | MS.gene029540:CDS |
| CGATCATTATTTGTTGAAGA+TGG | 0.367463 | 1.3:+73957707 | MS.gene029540:CDS |
| AGACTTAAACAGTACTCATT+TGG | 0.373861 | 1.3:+73959026 | MS.gene029540:CDS |
| CAATATTCAACCTCTTCTTC+GGG | 0.377237 | 1.3:+73959096 | MS.gene029540:CDS |
| GGAACAAGGTGTCTCCATAT+TGG | 0.390442 | 1.3:-73957790 | None:intergenic |
| TACACTAAATGCATGATATG+AGG | 0.394900 | 1.3:-73959686 | None:intergenic |
| TGATGATGATCATTCCAATA+TGG | 0.416015 | 1.3:+73957776 | MS.gene029540:CDS |
| GCTCTAATCATGAAGTATAT+AGG | 0.421934 | 1.3:-73959441 | None:intergenic |
| GGAGGAGGAGCTGTGTAATC+AGG | 0.426781 | 1.3:-73958836 | None:intergenic |
| TTCCTGTTGTGGTAGTTTGA+AGG | 0.427356 | 1.3:+73957809 | MS.gene029540:CDS |
| GATCATAGTTAGAATTGATA+AGG | 0.427640 | 1.3:-73959074 | None:intergenic |
| TGTTTATATCAGGGGAAATT+GGG | 0.428437 | 1.3:+73958990 | MS.gene029540:intron |
| AACCTTCAAACTACCACAAC+AGG | 0.428625 | 1.3:-73957811 | None:intergenic |
| ACTCTTCCCCTCGTAATTAG+TGG | 0.433107 | 1.3:+73959269 | MS.gene029540:CDS |
| AGATGGATATTAAATGTTCC+GGG | 0.433971 | 1.3:+73957724 | MS.gene029540:CDS |
| TATTAAATGTTCCGGGAAGC+TGG | 0.437118 | 1.3:+73957731 | MS.gene029540:CDS |
| TGCGATGCAGGCTGCATCCT+CGG | 0.439651 | 1.3:+73957665 | MS.gene029540:CDS |
| AAGCAGAAAGCGTGCGATGC+AGG | 0.450034 | 1.3:+73957653 | MS.gene029540:CDS |
| GGAAGTTACCTGAAACTCAT+TGG | 0.451447 | 1.3:-73958881 | None:intergenic |
| GATGTTGTCTCCGATGTCGC+TGG | 0.455481 | 1.3:-73959476 | None:intergenic |
| GTGTTATTATTTCGGAGTGC+TGG | 0.469107 | 1.3:+73959408 | MS.gene029540:CDS |
| TGCAGAACATACCATGAAAA+GGG | 0.471798 | 1.3:-73959312 | None:intergenic |
| ATGCAGAACATACCATGAAA+AGG | 0.472006 | 1.3:-73959313 | None:intergenic |
| CAGTACTCATTTGGTTAGCA+TGG | 0.474734 | 1.3:+73959035 | MS.gene029540:CDS |
| TTCATCTGATGATGAAATAG+AGG | 0.487470 | 1.3:+73959643 | MS.gene029540:CDS |
| ACCGCTGTATACATCTTCTG+TGG | 0.517155 | 1.3:-73958627 | None:intergenic |
| GCTGTGTAATCAGGCTTGAA+TGG | 0.517289 | 1.3:-73958827 | None:intergenic |
| ACTTTGATTTACTCGTTGAT+CGG | 0.526546 | 1.3:+73957595 | MS.gene029540:CDS |
| AGTTAGAATTGATAAGGCTC+TGG | 0.529910 | 1.3:-73959068 | None:intergenic |
| TTGATAAGGCTCTGGTCAGT+GGG | 0.533518 | 1.3:-73959060 | None:intergenic |
| CCGGGAAGCTGGCAGAATGC+AGG | 0.535324 | 1.3:+73957742 | MS.gene029540:CDS |
| TTAGGAGCATCCTAGTGCCT+TGG | 0.550967 | 1.3:+73959616 | MS.gene029540:intron |
| CACATGTGAGATATGCCATC+AGG | 0.551600 | 1.3:+73958672 | MS.gene029540:CDS |
| ATTGATAAGGCTCTGGTCAG+TGG | 0.565136 | 1.3:-73959061 | None:intergenic |
| ACAGCGGTGGTGTAATGAGA+AGG | 0.570745 | 1.3:+73958642 | MS.gene029540:CDS |
| GAGACACCTTGTTCCTGTTG+TGG | 0.577363 | 1.3:+73957798 | MS.gene029540:CDS |
| CTTTATTTCCACTAATTACG+AGG | 0.578088 | 1.3:-73959277 | None:intergenic |
| TATCAAACTTCCCGAAGAAG+AGG | 0.579750 | 1.3:-73959106 | None:intergenic |
| TTTATTTCCACTAATTACGA+GGG | 0.580239 | 1.3:-73959276 | None:intergenic |
| TGGCACTAATCCAGCGACAT+CGG | 0.586438 | 1.3:+73959466 | MS.gene029540:CDS |
| GATGAACTGACCAAGGCACT+AGG | 0.595162 | 1.3:-73959626 | None:intergenic |
| ATGTCGCTGGATTAGTGCCA+CGG | 0.608894 | 1.3:-73959463 | None:intergenic |
| CCGCTGTATACATCTTCTGT+GGG | 0.610748 | 1.3:-73958626 | None:intergenic |
| ATACTTCATGATTAGAGCCG+TGG | 0.621777 | 1.3:+73959446 | MS.gene029540:CDS |
| CAGCGGTGGTGTAATGAGAA+GGG | 0.623007 | 1.3:+73958643 | MS.gene029540:CDS |
| GCAGAACATACCATGAAAAG+GGG | 0.623505 | 1.3:-73959311 | None:intergenic |
| ATATGAGGTTGCGACTGCAA+AGG | 0.641191 | 1.3:-73959671 | None:intergenic |
| AAACTACCACAACAGGAACA+AGG | 0.641634 | 1.3:-73957804 | None:intergenic |
| ATCATCAGATGAACTGACCA+AGG | 0.647819 | 1.3:-73959633 | None:intergenic |
| CAGAACATACCATGAAAAGG+GGG | 0.660863 | 1.3:-73959310 | None:intergenic |
| ACAGAAGATGTATACAGCGG+TGG | 0.682707 | 1.3:+73958629 | MS.gene029540:CDS |
| GATGCAGGCTGCATCCTCGG+AGG | 0.685852 | 1.3:+73957668 | MS.gene029540:CDS |
| TTATTTCCACTAATTACGAG+GGG | 0.695633 | 1.3:-73959275 | None:intergenic |
| CTGATGGCATATCTCACATG+TGG | 0.721386 | 1.3:-73958671 | None:intergenic |
| TTCTGTGCTAGTCACCTCCG+AGG | 0.721922 | 1.3:-73957682 | None:intergenic |
| CCCACAGAAGATGTATACAG+CGG | 0.758174 | 1.3:+73958626 | MS.gene029540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATCAATTATAACATAAT+AGG | - | chr1.3:73958781-73958800 | None:intergenic | 15.0% |
| !! | ATTTGCATGTTAAAATTTAT+TGG | + | chr1.3:73957940-73957959 | MS.gene029540:intron | 15.0% |
| !! | TCATCAATTATAACATAATA+GGG | - | chr1.3:73958780-73958799 | None:intergenic | 15.0% |
| !! | AAAAATGAAAATATTGTGCA+TGG | - | chr1.3:73958905-73958924 | None:intergenic | 20.0% |
| !! | ATCAATTATAACATAATAGG+GGG | - | chr1.3:73958778-73958797 | None:intergenic | 20.0% |
| !! | CATCAATTATAACATAATAG+GGG | - | chr1.3:73958779-73958798 | None:intergenic | 20.0% |
| !! | TAAAATAAACCAGTAAGATT+TGG | - | chr1.3:73958023-73958042 | None:intergenic | 20.0% |
| !! | TAGTCACATATAAAAAGATT+TGG | + | chr1.3:73958107-73958126 | MS.gene029540:intron | 20.0% |
| !! | TTGCATTATTTATAATCCAT+GGG | - | chr1.3:73958474-73958493 | None:intergenic | 20.0% |
| !!! | AAAGATTTGGTTAAAATGAT+AGG | + | chr1.3:73958120-73958139 | MS.gene029540:intron | 20.0% |
| !!! | AAATCTTTTTATATGTGACT+AGG | - | chr1.3:73958108-73958127 | None:intergenic | 20.0% |
| !!! | ACACAATGATATTTTATTTG+TGG | + | chr1.3:73958747-73958766 | MS.gene029540:intron | 20.0% |
| !!! | AGTAATCACATGTTTTAATA+TGG | + | chr1.3:73957860-73957879 | MS.gene029540:intron | 20.0% |
| !!! | GTAATCACATGTTTTAATAT+GGG | + | chr1.3:73957861-73957880 | MS.gene029540:intron | 20.0% |
| !!! | TTTATTTTATTTCTGTTGGT+GGG | + | chr1.3:73958034-73958053 | MS.gene029540:intron | 20.0% |
| !!! | TTTGATAGGTGTTATTATTT+CGG | + | chr1.3:73959400-73959419 | MS.gene029540:intron | 20.0% |
| ! | AAATTCATTTCTGTTGTGTA+AGG | - | chr1.3:73958366-73958385 | None:intergenic | 25.0% |
| ! | AAGATGGATATTAAATGTTC+CGG | + | chr1.3:73957723-73957742 | MS.gene029540:CDS | 25.0% |
| ! | ATAAAATAGCCAAATCTTAC+TGG | + | chr1.3:73958011-73958030 | MS.gene029540:intron | 25.0% |
| ! | ATAACATACAATTTCAGTGA+TGG | + | chr1.3:73959334-73959353 | MS.gene029540:intron | 25.0% |
| ! | ATAATGCAAGTAGTTGTAAA+CGG | + | chr1.3:73958485-73958504 | MS.gene029540:intron | 25.0% |
| ! | ATACAAAACTGTAATTGCAA+AGG | - | chr1.3:73958443-73958462 | None:intergenic | 25.0% |
| ! | CTTGCATTATTTATAATCCA+TGG | - | chr1.3:73958475-73958494 | None:intergenic | 25.0% |
| ! | GATCATAGTTAGAATTGATA+AGG | - | chr1.3:73959077-73959096 | None:intergenic | 25.0% |
| ! | TACACAACAGAAATGAATTT+GGG | + | chr1.3:73958366-73958385 | MS.gene029540:intron | 25.0% |
| ! | TTACACAACAGAAATGAATT+TGG | + | chr1.3:73958365-73958384 | MS.gene029540:intron | 25.0% |
| ! | TTTATTTCCACTAATTACGA+GGG | - | chr1.3:73959279-73959298 | None:intergenic | 25.0% |
| !! | ATGGATTATACACTGAATAA+AGG | - | chr1.3:73958081-73958100 | None:intergenic | 25.0% |
| !! | TTTTGATCATTTTCTTACCA+AGG | + | chr1.3:73959357-73959376 | MS.gene029540:intron | 25.0% |
| !!! | AATTACAGTTTTGTATGTGA+TGG | + | chr1.3:73958447-73958466 | MS.gene029540:intron | 25.0% |
| !!! | CTGGTTTATTTTATTTCTGT+TGG | + | chr1.3:73958030-73958049 | MS.gene029540:intron | 25.0% |
| !!! | GTTTATTTTATTTCTGTTGG+TGG | + | chr1.3:73958033-73958052 | MS.gene029540:intron | 25.0% |
| AAAGTTTCTCAGCTGATATT+TGG | + | chr1.3:73958538-73958557 | MS.gene029540:intron | 30.0% | |
| ACACAACAGAAATGAATTTG+GGG | + | chr1.3:73958367-73958386 | MS.gene029540:intron | 30.0% | |
| ACTTACAAGATGTGATTAAC+TGG | + | chr1.3:73958233-73958252 | MS.gene029540:intron | 30.0% | |
| AGACTTAAACAGTACTCATT+TGG | + | chr1.3:73959026-73959045 | MS.gene029540:CDS | 30.0% | |
| AGATGGATATTAAATGTTCC+GGG | + | chr1.3:73957724-73957743 | MS.gene029540:CDS | 30.0% | |
| AGGGTTCACATATTAACTTA+CGG | - | chr1.3:73958934-73958953 | None:intergenic | 30.0% | |
| CATGAATCTTCATATACTCA+CGG | + | chr1.3:73959553-73959572 | MS.gene029540:intron | 30.0% | |
| CTAATAGTAACAAATGACCA+AGG | - | chr1.3:73959600-73959619 | None:intergenic | 30.0% | |
| GCTCTAATCATGAAGTATAT+AGG | - | chr1.3:73959444-73959463 | None:intergenic | 30.0% | |
| TACACTAAATGCATGATATG+AGG | - | chr1.3:73959689-73959708 | None:intergenic | 30.0% | |
| TATCTCTATCTGACTATTTC+TGG | + | chr1.3:73958149-73958168 | MS.gene029540:intron | 30.0% | |
| TCAATATTCAACCTCTTCTT+CGG | + | chr1.3:73959095-73959114 | MS.gene029540:CDS | 30.0% | |
| TGTTAGGAACAAATATAAGC+TGG | - | chr1.3:73958401-73958420 | None:intergenic | 30.0% | |
| TGTTTATATCAGGGGAAATT+GGG | + | chr1.3:73958990-73959009 | MS.gene029540:intron | 30.0% | |
| TTATATGTGACTAGGTAAGA+TGG | - | chr1.3:73958100-73958119 | None:intergenic | 30.0% | |
| TTATTTCCACTAATTACGAG+GGG | - | chr1.3:73959278-73959297 | None:intergenic | 30.0% | |
| TTGTGTACAAGTTTGTAGAA+AGG | - | chr1.3:73958733-73958752 | None:intergenic | 30.0% | |
| ! | AAAATGGCATCGAAAAAACA+GGG | - | chr1.3:73958953-73958972 | None:intergenic | 30.0% |
| ! | AAAGGCATACATTCTTTAGA+AGG | - | chr1.3:73959172-73959191 | None:intergenic | 30.0% |
| ! | AAGGCATACATTCTTTAGAA+GGG | - | chr1.3:73959171-73959190 | None:intergenic | 30.0% |
| ! | ACACTGAATAAAGGTTTTCA+GGG | - | chr1.3:73958072-73958091 | None:intergenic | 30.0% |
| ! | ACTTTGATTTACTCGTTGAT+CGG | + | chr1.3:73957595-73957614 | MS.gene029540:CDS | 30.0% |
| ! | CGATCATTATTTGTTGAAGA+TGG | + | chr1.3:73957707-73957726 | MS.gene029540:CDS | 30.0% |
| ! | CTTGGTCATTTGTTACTATT+AGG | + | chr1.3:73959598-73959617 | MS.gene029540:intron | 30.0% |
| ! | CTTTATTTCCACTAATTACG+AGG | - | chr1.3:73959280-73959299 | None:intergenic | 30.0% |
| ! | GAACAATTTAAGTTACCTGA+TGG | - | chr1.3:73958690-73958709 | None:intergenic | 30.0% |
| ! | GTGATTTGTAAGAATTTGTG+AGG | + | chr1.3:73957905-73957924 | MS.gene029540:intron | 30.0% |
| ! | TACACTGAATAAAGGTTTTC+AGG | - | chr1.3:73958073-73958092 | None:intergenic | 30.0% |
| ! | TGATGATGATCATTCCAATA+TGG | + | chr1.3:73957776-73957795 | MS.gene029540:CDS | 30.0% |
| ! | TTCATCTGATGATGAAATAG+AGG | + | chr1.3:73959643-73959662 | MS.gene029540:CDS | 30.0% |
| !! | CAATTTGATGGAGTTTTGAT+AGG | + | chr1.3:73959386-73959405 | MS.gene029540:intron | 30.0% |
| AGGAACAAATATAAGCTGGT+TGG | - | chr1.3:73958397-73958416 | None:intergenic | 35.0% | |
| AGTTAGAATTGATAAGGCTC+TGG | - | chr1.3:73959071-73959090 | None:intergenic | 35.0% | |
| ATACGTCCAAACTGAAAAAG+TGG | - | chr1.3:73958860-73958879 | None:intergenic | 35.0% | |
| ATCGAGTGAGTTTCTATCAT+AGG | + | chr1.3:73959496-73959515 | MS.gene029540:intron | 35.0% | |
| ATGAAGATTCATGTGCACAA+TGG | - | chr1.3:73959546-73959565 | None:intergenic | 35.0% | |
| ATGCAGAACATACCATGAAA+AGG | - | chr1.3:73959316-73959335 | None:intergenic | 35.0% | |
| CAATATTCAACCTCTTCTTC+GGG | + | chr1.3:73959096-73959115 | MS.gene029540:CDS | 35.0% | |
| CCATCAAATTGAGAAAACCT+TGG | - | chr1.3:73959377-73959396 | None:intergenic | 35.0% | |
| CTGTTTATATCAGGGGAAAT+TGG | + | chr1.3:73958989-73959008 | MS.gene029540:intron | 35.0% | |
| GCAAACCAAATATGTTGTGA+TGG | + | chr1.3:73957962-73957981 | MS.gene029540:intron | 35.0% | |
| GTTCACATATTAACTTACGG+AGG | - | chr1.3:73958931-73958950 | None:intergenic | 35.0% | |
| TATACTCACGGTAAATTCTC+TGG | + | chr1.3:73959565-73959584 | MS.gene029540:intron | 35.0% | |
| TGCAGAACATACCATGAAAA+GGG | - | chr1.3:73959315-73959334 | None:intergenic | 35.0% | |
| ! | ATTCCCATGCTGTTTATATC+AGG | + | chr1.3:73958980-73958999 | MS.gene029540:intron | 35.0% |
| ! | CACTGAATAAAGGTTTTCAG+GGG | - | chr1.3:73958071-73958090 | None:intergenic | 35.0% |
| ! | CCAAGGTTTTCTCAATTTGA+TGG | + | chr1.3:73959374-73959393 | MS.gene029540:intron | 35.0% |
| ! | GAAAATGGCATCGAAAAAAC+AGG | - | chr1.3:73958954-73958973 | None:intergenic | 35.0% |
| ! | TTCCCATGCTGTTTATATCA+GGG | + | chr1.3:73958981-73959000 | MS.gene029540:intron | 35.0% |
| !! | ATTTCTGGCAAAGGTTAGAT+AGG | + | chr1.3:73958164-73958183 | MS.gene029540:intron | 35.0% |
| !! | CAAATATGTTGTGATGGACA+CGG | + | chr1.3:73957968-73957987 | MS.gene029540:intron | 35.0% |
| !! | TATCTGACTATTTCTGGCAA+AGG | + | chr1.3:73958155-73958174 | MS.gene029540:intron | 35.0% |
| !!! | TTCTCTGGTGTTTTTTTCCT+TGG | + | chr1.3:73959580-73959599 | MS.gene029540:intron | 35.0% |
| AAACTACCACAACAGGAACA+AGG | - | chr1.3:73957807-73957826 | None:intergenic | 40.0% | |
| AACCTTCAAACTACCACAAC+AGG | - | chr1.3:73957814-73957833 | None:intergenic | 40.0% | |
| ATACTTCATGATTAGAGCCG+TGG | + | chr1.3:73959446-73959465 | MS.gene029540:CDS | 40.0% | |
| ATCATCAGATGAACTGACCA+AGG | - | chr1.3:73959636-73959655 | None:intergenic | 40.0% | |
| ATGTATGCCTTTACACGTTC+TGG | + | chr1.3:73959180-73959199 | MS.gene029540:intron | 40.0% | |
| CAGAACATACCATGAAAAGG+GGG | - | chr1.3:73959313-73959332 | None:intergenic | 40.0% | |
| CAGTACTCATTTGGTTAGCA+TGG | + | chr1.3:73959035-73959054 | MS.gene029540:CDS | 40.0% | |
| CATGGGAATGCATTGGAAAA+TGG | - | chr1.3:73958969-73958988 | None:intergenic | 40.0% | |
| CGTGTCCATCACAACATATT+TGG | - | chr1.3:73957970-73957989 | None:intergenic | 40.0% | |
| GACGTATTCCAATGAGTTTC+AGG | + | chr1.3:73958873-73958892 | MS.gene029540:CDS | 40.0% | |
| GCAGAACATACCATGAAAAG+GGG | - | chr1.3:73959314-73959333 | None:intergenic | 40.0% | |
| GCATAGAAAGCAGGAAACTT+AGG | - | chr1.3:73958512-73958531 | None:intergenic | 40.0% | |
| GGAAGTTACCTGAAACTCAT+TGG | - | chr1.3:73958884-73958903 | None:intergenic | 40.0% | |
| GTAGAAAGGAGATGCAAATC+AGG | - | chr1.3:73958719-73958738 | None:intergenic | 40.0% | |
| GTTCCTAACATGCATTGCAT+TGG | + | chr1.3:73958411-73958430 | MS.gene029540:intron | 40.0% | |
| TAAACAGCATGGGAATGCAT+TGG | - | chr1.3:73958976-73958995 | None:intergenic | 40.0% | |
| TATCAAACTTCCCGAAGAAG+AGG | - | chr1.3:73959109-73959128 | None:intergenic | 40.0% | |
| TATTAAATGTTCCGGGAAGC+TGG | + | chr1.3:73957731-73957750 | MS.gene029540:CDS | 40.0% | |
| TCAAGGGTCTAATGGAGAAA+AGG | - | chr1.3:73958191-73958210 | None:intergenic | 40.0% | |
| TCACCAATGCAATGCATGTT+AGG | - | chr1.3:73958417-73958436 | None:intergenic | 40.0% | |
| TCCCCTGATATAAACAGCAT+GGG | - | chr1.3:73958986-73959005 | None:intergenic | 40.0% | |
| TGGCGAGGAGACAAAAAAAA+AGG | - | chr1.3:73959526-73959545 | None:intergenic | 40.0% | |
| TTCCCCTGATATAAACAGCA+TGG | - | chr1.3:73958987-73959006 | None:intergenic | 40.0% | |
| TTCCTGTTGTGGTAGTTTGA+AGG | + | chr1.3:73957809-73957828 | MS.gene029540:CDS | 40.0% | |
| TTCTTCTCATGTGCAGTTCA+TGG | + | chr1.3:73959226-73959245 | MS.gene029540:intron | 40.0% | |
| ! | AACATGCATTGCATTGGTGA+AGG | + | chr1.3:73958417-73958436 | MS.gene029540:intron | 40.0% |
| ! | CTATTCTTTCCCCCTTTTCA+TGG | + | chr1.3:73959301-73959320 | MS.gene029540:CDS | 40.0% |
| ! | GTGTTATTATTTCGGAGTGC+TGG | + | chr1.3:73959408-73959427 | MS.gene029540:CDS | 40.0% |
| ! | TCCCATGCTGTTTATATCAG+GGG | + | chr1.3:73958982-73959001 | MS.gene029540:intron | 40.0% |
| ! | TCTGTTGTGTAAGGTGTCTA+AGG | - | chr1.3:73958357-73958376 | None:intergenic | 40.0% |
| ! | TTTTGTATGTGATGGTCCCA+TGG | + | chr1.3:73958455-73958474 | MS.gene029540:intron | 40.0% |
| ACAGAAGATGTATACAGCGG+TGG | + | chr1.3:73958629-73958648 | MS.gene029540:CDS | 45.0% | |
| ACCGCTGTATACATCTTCTG+TGG | - | chr1.3:73958630-73958649 | None:intergenic | 45.0% | |
| ACTCTTCCCCTCGTAATTAG+TGG | + | chr1.3:73959269-73959288 | MS.gene029540:CDS | 45.0% | |
| ATATGAGGTTGCGACTGCAA+AGG | - | chr1.3:73959674-73959693 | None:intergenic | 45.0% | |
| CACATGTGAGATATGCCATC+AGG | + | chr1.3:73958672-73958691 | MS.gene029540:CDS | 45.0% | |
| CCAAACTGAAAAAGTGGAGG+AGG | - | chr1.3:73958854-73958873 | None:intergenic | 45.0% | |
| CCCACAGAAGATGTATACAG+CGG | + | chr1.3:73958626-73958645 | MS.gene029540:CDS | 45.0% | |
| CCGCTGTATACATCTTCTGT+GGG | - | chr1.3:73958629-73958648 | None:intergenic | 45.0% | |
| CGTCCAAACTGAAAAAGTGG+AGG | - | chr1.3:73958857-73958876 | None:intergenic | 45.0% | |
| CTGATGGCATATCTCACATG+TGG | - | chr1.3:73958674-73958693 | None:intergenic | 45.0% | |
| GCTGTGTAATCAGGCTTGAA+TGG | - | chr1.3:73958830-73958849 | None:intergenic | 45.0% | |
| GGAGATGCAAATCAGGAACT+TGG | - | chr1.3:73958712-73958731 | None:intergenic | 45.0% | |
| GTCGTAACCAGAACGTGTAA+AGG | - | chr1.3:73959190-73959209 | None:intergenic | 45.0% | |
| TCAGCTGAGAAACTTTCGTC+AGG | - | chr1.3:73958534-73958553 | None:intergenic | 45.0% | |
| TTCTGCTGTCAAGGGTCTAA+TGG | - | chr1.3:73958199-73958218 | None:intergenic | 45.0% | |
| TTTCGTCAGGCATAGAAAGC+AGG | - | chr1.3:73958521-73958540 | None:intergenic | 45.0% | |
| ! | ATTGATAAGGCTCTGGTCAG+TGG | - | chr1.3:73959064-73959083 | None:intergenic | 45.0% |
| ! | GGAACAAGGTGTCTCCATAT+TGG | - | chr1.3:73957793-73957812 | None:intergenic | 45.0% |
| ! | TTGATAAGGCTCTGGTCAGT+GGG | - | chr1.3:73959063-73959082 | None:intergenic | 45.0% |
| !!! | CCTCCTCCACTTTTTCAGTT+TGG | + | chr1.3:73958851-73958870 | MS.gene029540:CDS | 45.0% |
| ACAGCGGTGGTGTAATGAGA+AGG | + | chr1.3:73958642-73958661 | MS.gene029540:CDS | 50.0% | |
| CAGCGGTGGTGTAATGAGAA+GGG | + | chr1.3:73958643-73958662 | MS.gene029540:CDS | 50.0% | |
| GAGACACCTTGTTCCTGTTG+TGG | + | chr1.3:73957798-73957817 | MS.gene029540:CDS | 50.0% | |
| GATTCATGTGCACAATGGCG+AGG | - | chr1.3:73959541-73959560 | None:intergenic | 50.0% | |
| TGGCACTAATCCAGCGACAT+CGG | + | chr1.3:73959466-73959485 | MS.gene029540:CDS | 50.0% | |
| ! | GATGAACTGACCAAGGCACT+AGG | - | chr1.3:73959629-73959648 | None:intergenic | 50.0% |
| !! | ATGTCGCTGGATTAGTGCCA+CGG | - | chr1.3:73959466-73959485 | None:intergenic | 50.0% |
| !! | TTAGGAGCATCCTAGTGCCT+TGG | + | chr1.3:73959616-73959635 | MS.gene029540:intron | 50.0% |
| ACCACCTCGTTCTGCTGTCA+AGG | - | chr1.3:73958208-73958227 | None:intergenic | 55.0% | |
| AGACCCTTGACAGCAGAACG+AGG | + | chr1.3:73958201-73958220 | MS.gene029540:intron | 55.0% | |
| CCACCTCGTTCTGCTGTCAA+GGG | - | chr1.3:73958207-73958226 | None:intergenic | 55.0% | |
| GATGTTGTCTCCGATGTCGC+TGG | - | chr1.3:73959479-73959498 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTGTAATC+AGG | - | chr1.3:73958839-73958858 | None:intergenic | 55.0% | |
| TTCTGTGCTAGTCACCTCCG+AGG | - | chr1.3:73957685-73957704 | None:intergenic | 55.0% | |
| ! | AAGCAGAAAGCGTGCGATGC+AGG | + | chr1.3:73957653-73957672 | MS.gene029540:CDS | 55.0% |
| CCCTTGACAGCAGAACGAGG+TGG | + | chr1.3:73958204-73958223 | MS.gene029540:intron | 60.0% | |
| CCTGCATTCTGCCAGCTTCC+CGG | - | chr1.3:73957745-73957764 | None:intergenic | 60.0% | |
| TGCGATGCAGGCTGCATCCT+CGG | + | chr1.3:73957665-73957684 | MS.gene029540:CDS | 60.0% | |
| CCGGGAAGCTGGCAGAATGC+AGG | + | chr1.3:73957742-73957761 | MS.gene029540:CDS | 65.0% | |
| GATGCAGGCTGCATCCTCGG+AGG | + | chr1.3:73957668-73957687 | MS.gene029540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73957585 | 73959709 | 73957585 | ID=MS.gene029540 |
| chr1.3 | mRNA | 73957585 | 73959709 | 73957585 | ID=MS.gene029540.t1;Parent=MS.gene029540 |
| chr1.3 | exon | 73957585 | 73957830 | 73957585 | ID=MS.gene029540.t1.exon1;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73957585 | 73957830 | 73957585 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73958622 | 73958693 | 73958622 | ID=MS.gene029540.t1.exon2;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73958622 | 73958693 | 73958622 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73958827 | 73958894 | 73958827 | ID=MS.gene029540.t1.exon3;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73958827 | 73958894 | 73958827 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73959002 | 73959152 | 73959002 | ID=MS.gene029540.t1.exon4;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73959002 | 73959152 | 73959002 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73959242 | 73959322 | 73959242 | ID=MS.gene029540.t1.exon5;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73959242 | 73959322 | 73959242 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73959408 | 73959500 | 73959408 | ID=MS.gene029540.t1.exon6;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73959408 | 73959500 | 73959408 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| chr1.3 | exon | 73959620 | 73959709 | 73959620 | ID=MS.gene029540.t1.exon7;Parent=MS.gene029540.t1 |
| chr1.3 | CDS | 73959620 | 73959709 | 73959620 | ID=cds.MS.gene029540.t1;Parent=MS.gene029540.t1 |
| Gene Sequence |
| Protein sequence |
