AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029898

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029898.t1 MTR_1g067370 99.544 439 2 0 1 439 1 439 0.0 893
MS.gene029898.t1 MTR_7g100360 84.634 423 58 2 24 439 22 444 0.0 679
MS.gene029898.t1 MTR_3g080830 54.545 418 182 5 26 439 24 437 2.28e-158 454
MS.gene029898.t1 MTR_1g025450 55.034 149 66 1 26 173 301 449 1.29e-38 147
MS.gene029898.t1 MTR_1g061930 39.669 121 70 3 321 438 1 121 2.59e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029898.t1 AT5G18520 76.244 442 100 3 1 439 1 440 0.0 687
MS.gene029898.t1 AT3G09570 77.830 424 91 2 19 439 16 439 0.0 663
MS.gene029898.t1 AT5G02630 61.343 432 160 4 4 433 2 428 0.0 534
MS.gene029898.t1 AT5G42090 54.808 416 185 2 27 439 24 439 1.98e-164 470

Find 113 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTTATTCCTCTTC+AGG 0.246602 1.4:-54142262 MS.gene029898:CDS
TGTTATTCCTCTTCAGGTTT+TGG 0.265822 1.4:-54142256 MS.gene029898:CDS
GTAACCCAATCCTTGATAAA+AGG 0.306429 1.4:+54142198 None:intergenic
ATGATCCTCTTAGAGAAATT+CGG 0.313606 1.4:-54142987 MS.gene029898:CDS
GCAACACGACACGGATAAAC+TGG 0.334981 1.4:+54142364 None:intergenic
AATTTAGCTTCCGTTGTAAT+CGG 0.341534 1.4:-54142231 MS.gene029898:CDS
TTTGATCTCAGCCGTTGATT+GGG 0.345915 1.4:+54143040 None:intergenic
ATTTGATCTCAGCCGTTGAT+TGG 0.359823 1.4:+54143039 None:intergenic
GACGGTGGTGATCACCGTTT+TGG 0.361569 1.4:+54143100 None:intergenic
GGATTGGGTTACTTGGAATC+AGG 0.378170 1.4:-54142187 MS.gene029898:CDS
TCCGTTGTAATCGGCGAAAC+TGG 0.378237 1.4:-54142222 MS.gene029898:CDS
TTATCAAGGATTGGGTTACT+TGG 0.387701 1.4:-54142194 MS.gene029898:CDS
TGATCCTCTTAGAGAAATTC+GGG 0.400373 1.4:-54142986 MS.gene029898:CDS
GAAGCGATTCTTCGCTTAAG+AGG 0.412419 1.4:+54142871 None:intergenic
GCCATGGAAACGGAGGTTTC+CGG 0.427556 1.4:+54142675 None:intergenic
GTCATTGTATTGATCGGAAC+TGG 0.430766 1.4:-54142333 MS.gene029898:CDS
GAACTCATTCGGAGAAGTTA+CGG 0.433751 1.4:+54142722 None:intergenic
CTCTTCTCCGTCGTGTACTT+CGG 0.437135 1.4:-54142567 MS.gene029898:CDS
AACTCATTCGGAGAAGTTAC+GGG 0.446315 1.4:+54142723 None:intergenic
AAGCTGCGGAGGTTGCTCTC+AGG 0.452635 1.4:-54141828 MS.gene029898:CDS
CCATTACTGCTTATAAGTAT+AGG 0.453867 1.4:-54141966 MS.gene029898:CDS
AGACGGAGGAAACGGCGATC+TGG 0.455414 1.4:+54142943 None:intergenic
AGCGACGGAGACGGAGGAAA+CGG 0.456624 1.4:+54142935 None:intergenic
GAGGATCATGGGTCGGGTAT+CGG 0.458332 1.4:+54143001 None:intergenic
GATTTAATCGACCATACAAT+AGG 0.463888 1.4:+54142120 None:intergenic
TATGGTCGATTAAATCGCTT+AGG 0.480587 1.4:-54142113 MS.gene029898:CDS
GATCTGGATGTGGCCGGTGT+GGG 0.484944 1.4:+54142959 None:intergenic
AAGAAGAGACTGAACTCATT+CGG 0.487216 1.4:+54142711 None:intergenic
CTCTAAGAGGATCATGGGTC+GGG 0.488515 1.4:+54142995 None:intergenic
ATAACAAACGCTCCGTTCAC+CGG 0.489572 1.4:-54142512 MS.gene029898:CDS
TTGATCTCAGCCGTTGATTG+GGG 0.493890 1.4:+54143041 None:intergenic
TTTGCAAGAAAGGGAGAAGA+AGG 0.498982 1.4:-54142289 MS.gene029898:CDS
GAATTTCTCTAAGAGGATCA+TGG 0.499199 1.4:+54142989 None:intergenic
AGCTGCGGAGGTTGCTCTCA+GGG 0.500321 1.4:-54141827 MS.gene029898:CDS
ATCCCATCCATGTGGAGTAC+CGG 0.501308 1.4:+54142404 None:intergenic
CCTATACTTATAAGCAGTAA+TGG 0.502591 1.4:+54141966 None:intergenic
TTCACCGTCATTGTATTGAT+CGG 0.507639 1.4:-54142339 MS.gene029898:CDS
GGTTAGCAATCTTGCTGAGG+AGG 0.512540 1.4:-54141941 MS.gene029898:CDS
GAATCGAGAACGCAGAAGCT+AGG 0.512869 1.4:+54142819 None:intergenic
AATCCGAGACGAGATGGATC+GGG 0.515601 1.4:+54142897 None:intergenic
GGTACGAACCGCCATGGAAA+CGG 0.516857 1.4:+54142665 None:intergenic
GAATCCGAGACGAGATGGAT+CGG 0.518346 1.4:+54142896 None:intergenic
CCGCCATGAGGAGATGGATC+CGG 0.520442 1.4:+54142493 None:intergenic
GAACGGTTAAACGCCGCAGT+TGG 0.520553 1.4:+54142750 None:intergenic
CGATCTGGATGTGGCCGGTG+TGG 0.527010 1.4:+54142958 None:intergenic
TTGTGTTGCAGCGGCAGCGA+CGG 0.528585 1.4:+54142920 None:intergenic
ACCGGAAACCTCCGTTTCCA+TGG 0.528671 1.4:-54142676 MS.gene029898:CDS
TCACCGGTACTCCACATGGA+TGG 0.539403 1.4:-54142407 MS.gene029898:CDS
CGGTTAAACGCCGCAGTTGG+AGG 0.540690 1.4:+54142753 None:intergenic
AGGAAGAATCCGAGACGAGA+TGG 0.541758 1.4:+54142891 None:intergenic
TCTCTAAGAGGATCATGGGT+CGG 0.545583 1.4:+54142994 None:intergenic
AGGAAACGGCGATCTGGATG+TGG 0.546544 1.4:+54142949 None:intergenic
GAGAAGTTACGGGGTAAGAA+CGG 0.552674 1.4:+54142733 None:intergenic
GTCCGTGATTATCTTTCCGC+CGG 0.554079 1.4:-54142618 MS.gene029898:CDS
GAAGTGCCGCCATGAGGAGA+TGG 0.555399 1.4:+54142487 None:intergenic
TGAACCCGAATTTCTCTAAG+AGG 0.557990 1.4:+54142982 None:intergenic
TTAAACGCCGCAGTTGGAGG+TGG 0.561889 1.4:+54142756 None:intergenic
GGCATCGAGGTTGAAAAGCT+CGG 0.563320 1.4:+54142644 None:intergenic
ATGGTCGATTAAATCGCTTA+GGG 0.564486 1.4:-54142112 MS.gene029898:CDS
CACCGGTACTCCACATGGAT+GGG 0.565762 1.4:-54142406 MS.gene029898:CDS
AAATTCGCCAAAACCTGAAG+AGG 0.566176 1.4:+54142249 None:intergenic
AAATACTCATTCTTCTCCAC+CGG 0.566222 1.4:+54141874 None:intergenic
TTACTGCTTATAAGTATAGG+TGG 0.566517 1.4:-54141963 MS.gene029898:CDS
AAACATTATGTCAAGGTCAC+CGG 0.568178 1.4:-54142423 MS.gene029898:CDS
CTTGACATAATGTTTATCCT+CGG 0.571094 1.4:+54142431 None:intergenic
CGGTGAAAAGCAACACGACA+CGG 0.571831 1.4:+54142355 None:intergenic
AATCGAGAACGCAGAAGCTA+GGG 0.571969 1.4:+54142820 None:intergenic
GGAAAGATAATCACGGACTC+CGG 0.572809 1.4:+54142623 None:intergenic
GAGGAGATGGATCCGGTGAA+CGG 0.573260 1.4:+54142500 None:intergenic
GGAGGAAGAAGAAGCTGCGG+AGG 0.577819 1.4:-54141839 MS.gene029898:CDS
AGACGGTAACTGAGTTTGAC+CGG 0.579031 1.4:+54142599 None:intergenic
AATTTCTCTAAGAGGATCAT+GGG 0.580478 1.4:+54142990 None:intergenic
TCACCGGATCCATCTCCTCA+TGG 0.581328 1.4:-54142496 MS.gene029898:CDS
AGACCGATGGAAAAGCTGCT+AGG 0.583599 1.4:-54142080 MS.gene029898:CDS
GTTAGCAATCTTGCTGAGGA+GGG 0.583606 1.4:-54141940 MS.gene029898:CDS
ACCAGTTTCGCCGATTACAA+CGG 0.586450 1.4:+54142221 None:intergenic
CTTCTTCGCTAACTGTGCAC+CGG 0.590271 1.4:-54142694 MS.gene029898:CDS
GATCATGGGTCGGGTATCGG+AGG 0.594584 1.4:+54143004 None:intergenic
AAGCTCGGTACGAACCGCCA+TGG 0.596283 1.4:+54142659 None:intergenic
AACGGCGATCTGGATGTGGC+CGG 0.598066 1.4:+54142953 None:intergenic
TACTGCTTATAAGTATAGGT+GGG 0.603318 1.4:-54141962 MS.gene029898:CDS
GGTATCGGAGGTTATTGTGA+GGG 0.605524 1.4:+54143016 None:intergenic
TTGGAGGTGGTGAAAGATCA+CGG 0.606308 1.4:+54142769 None:intergenic
TAACTTGATTTGTGCCGCCG+AGG 0.609812 1.4:-54142448 MS.gene029898:CDS
AAGGTCACCGGTACTCCACA+TGG 0.613539 1.4:-54142411 MS.gene029898:CDS
TGATCTCAGCCGTTGATTGG+GGG 0.614677 1.4:+54143042 None:intergenic
TTGTATTGATCGGAACTGGA+TGG 0.615956 1.4:-54142329 MS.gene029898:CDS
TGCAGCGGCAGCGACGGAGA+CGG 0.619834 1.4:+54142926 None:intergenic
AGCGGCAGCGACGGAGACGG+AGG 0.621423 1.4:+54142929 None:intergenic
CGAGGATAAACATTATGTCA+AGG 0.627926 1.4:-54142430 MS.gene029898:CDS
TGAGGAGGAAGAAGAAGCTG+CGG 0.630700 1.4:-54141842 MS.gene029898:CDS
GAGAAGAGAAAGAACAGAGA+CGG 0.631076 1.4:+54142582 None:intergenic
CAACCCGATCCATCTCGTCT+CGG 0.633761 1.4:-54142900 MS.gene029898:CDS
AGGGAAACCTCAAAGACCGA+TGG 0.641237 1.4:-54142093 MS.gene029898:CDS
TGGATCGGGTTGTGTTGCAG+CGG 0.642391 1.4:+54142911 None:intergenic
TCTTTCACCACCTCCAACTG+CGG 0.654408 1.4:-54142763 MS.gene029898:CDS
TCAACAGAAGTGCCGCCATG+AGG 0.664003 1.4:+54142481 None:intergenic
AATCACGGACTCCGGCATCG+AGG 0.665196 1.4:+54142631 None:intergenic
GACATAATGTTTATCCTCGG+CGG 0.665632 1.4:+54142434 None:intergenic
GGGTATCGGAGGTTATTGTG+AGG 0.669465 1.4:+54143015 None:intergenic
GTGGGTTAGCAATCTTGCTG+AGG 0.670293 1.4:-54141944 MS.gene029898:CDS
GGAAACCTCCGTTTCCATGG+CGG 0.672147 1.4:-54142673 MS.gene029898:CDS
AGTTCCGATCAATACAATGA+CGG 0.676682 1.4:+54142335 None:intergenic
AAATTCGGGTTCACCCACAC+CGG 0.680372 1.4:-54142972 MS.gene029898:CDS
AAGAGAACATCCCATCCATG+TGG 0.690008 1.4:+54142396 None:intergenic
GACCGGCGGAAAGATAATCA+CGG 0.713828 1.4:+54142616 None:intergenic
ACGAACCGCCATGGAAACGG+AGG 0.722339 1.4:+54142668 None:intergenic
ACTCATTCGGAGAAGTTACG+GGG 0.726459 1.4:+54142724 None:intergenic
GAGAAAACCGAAGTACACGA+CGG 0.734771 1.4:+54142560 None:intergenic
CCGGATCCATCTCCTCATGG+CGG 0.735489 1.4:-54142493 MS.gene029898:CDS
GATTGTGATGAGTGAAACGA+CGG 0.759491 1.4:+54143082 None:intergenic
CGGTAACTGAGTTTGACCGG+CGG 0.781047 1.4:+54142602 None:intergenic
TGTGATGAGTGAAACGACGG+TGG 0.807665 1.4:+54143085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATCATTTTTCCTATTGTA+TGG - chr1.4:54142780-54142799 MS.gene029898:CDS 25.0%
!!! CAGTTTTACATTGTTGTTAT+CGG - chr1.4:54142881-54142900 MS.gene029898:CDS 25.0%
ATGATCCTCTTAGAGAAATT+CGG - chr1.4:54141924-54141943 MS.gene029898:CDS 30.0%
CCATTACTGCTTATAAGTAT+AGG - chr1.4:54142945-54142964 MS.gene029898:CDS 30.0%
CCTATACTTATAAGCAGTAA+TGG + chr1.4:54142948-54142967 None:intergenic 30.0%
CTTGACATAATGTTTATCCT+CGG + chr1.4:54142483-54142502 None:intergenic 30.0%
GATTTAATCGACCATACAAT+AGG + chr1.4:54142794-54142813 None:intergenic 30.0%
TACTGCTTATAAGTATAGGT+GGG - chr1.4:54142949-54142968 MS.gene029898:CDS 30.0%
TTACTGCTTATAAGTATAGG+TGG - chr1.4:54142948-54142967 MS.gene029898:CDS 30.0%
! AATTTAGCTTCCGTTGTAAT+CGG - chr1.4:54142680-54142699 MS.gene029898:CDS 30.0%
! AATTTCTCTAAGAGGATCAT+GGG + chr1.4:54141924-54141943 None:intergenic 30.0%
! CATGTTTTACATGTTTATGC+CGG - chr1.4:54143018-54143037 MS.gene029898:CDS 30.0%
! TATGATTGTTATTCCTCTTC+AGG - chr1.4:54142649-54142668 MS.gene029898:CDS 30.0%
AAACATTATGTCAAGGTCAC+CGG - chr1.4:54142488-54142507 MS.gene029898:CDS 35.0%
AAATACTCATTCTTCTCCAC+CGG + chr1.4:54143040-54143059 None:intergenic 35.0%
AAGAAGAGACTGAACTCATT+CGG + chr1.4:54142203-54142222 None:intergenic 35.0%
AGTTCCGATCAATACAATGA+CGG + chr1.4:54142579-54142598 None:intergenic 35.0%
ATGGTCGATTAAATCGCTTA+GGG - chr1.4:54142799-54142818 MS.gene029898:CDS 35.0%
CGAGGATAAACATTATGTCA+AGG - chr1.4:54142481-54142500 MS.gene029898:CDS 35.0%
GTAACCCAATCCTTGATAAA+AGG + chr1.4:54142716-54142735 None:intergenic 35.0%
TATGGTCGATTAAATCGCTT+AGG - chr1.4:54142798-54142817 MS.gene029898:CDS 35.0%
TGATCCTCTTAGAGAAATTC+GGG - chr1.4:54141925-54141944 MS.gene029898:CDS 35.0%
TTATCAAGGATTGGGTTACT+TGG - chr1.4:54142717-54142736 MS.gene029898:CDS 35.0%
TTCTCCCTTTCTTGCAAAAA+CGG + chr1.4:54142620-54142639 None:intergenic 35.0%
! GAATTTCTCTAAGAGGATCA+TGG + chr1.4:54141925-54141944 None:intergenic 35.0%
! TGAGTATTTTGTGCTTGATG+AGG - chr1.4:54143051-54143070 MS.gene029898:CDS 35.0%
! TGGTCCTTTTATCAAGGATT+GGG - chr1.4:54142709-54142728 MS.gene029898:CDS 35.0%
! TTCACCGTCATTGTATTGAT+CGG - chr1.4:54142572-54142591 MS.gene029898:CDS 35.0%
!! TCGCGAAGTTAACACTTTTT+AGG - chr1.4:54142858-54142877 MS.gene029898:CDS 35.0%
!! TGTTATTCCTCTTCAGGTTT+TGG - chr1.4:54142655-54142674 MS.gene029898:CDS 35.0%
AAATTCGCCAAAACCTGAAG+AGG + chr1.4:54142665-54142684 None:intergenic 40.0%
AACTCATTCGGAGAAGTTAC+GGG + chr1.4:54142191-54142210 None:intergenic 40.0%
ATTTGATCTCAGCCGTTGAT+TGG + chr1.4:54141875-54141894 None:intergenic 40.0%
GAACTCATTCGGAGAAGTTA+CGG + chr1.4:54142192-54142211 None:intergenic 40.0%
GACATAATGTTTATCCTCGG+CGG + chr1.4:54142480-54142499 None:intergenic 40.0%
GAGAAGAGAAAGAACAGAGA+CGG + chr1.4:54142332-54142351 None:intergenic 40.0%
GATTGTGATGAGTGAAACGA+CGG + chr1.4:54141832-54141851 None:intergenic 40.0%
TGAACCCGAATTTCTCTAAG+AGG + chr1.4:54141932-54141951 None:intergenic 40.0%
TTTGCAAGAAAGGGAGAAGA+AGG - chr1.4:54142622-54142641 MS.gene029898:CDS 40.0%
! ATTCCTAGCAGCTTTTCCAT+CGG + chr1.4:54142837-54142856 None:intergenic 40.0%
! CGAAACTGGTCCTTTTATCA+AGG - chr1.4:54142703-54142722 MS.gene029898:CDS 40.0%
! CTGGTCCTTTTATCAAGGAT+TGG - chr1.4:54142708-54142727 MS.gene029898:CDS 40.0%
! GTATTTTGTGCTTGATGAGG+AGG - chr1.4:54143054-54143073 MS.gene029898:CDS 40.0%
! GTCATTGTATTGATCGGAAC+TGG - chr1.4:54142578-54142597 MS.gene029898:CDS 40.0%
! GTTTTACATGTTTATGCCGG+TGG - chr1.4:54143021-54143040 MS.gene029898:CDS 40.0%
! TTGTATTGATCGGAACTGGA+TGG - chr1.4:54142582-54142601 MS.gene029898:CDS 40.0%
! TTTGATCTCAGCCGTTGATT+GGG + chr1.4:54141874-54141893 None:intergenic 40.0%
!!! GAAGCCGTTTTTGCAAGAAA+GGG - chr1.4:54142613-54142632 MS.gene029898:CDS 40.0%
!!! TGAAGCCGTTTTTGCAAGAA+AGG - chr1.4:54142612-54142631 MS.gene029898:CDS 40.0%
AAGAGAACATCCCATCCATG+TGG + chr1.4:54142518-54142537 None:intergenic 45.0%
AATCGAGAACGCAGAAGCTA+GGG + chr1.4:54142094-54142113 None:intergenic 45.0%
ACTCATTCGGAGAAGTTACG+GGG + chr1.4:54142190-54142209 None:intergenic 45.0%
AGACGGTAACTGAGTTTGAC+CGG + chr1.4:54142315-54142334 None:intergenic 45.0%
ATAACAAACGCTCCGTTCAC+CGG - chr1.4:54142399-54142418 MS.gene029898:CDS 45.0%
CACAACAATCCCCCAATCAA+CGG - chr1.4:54141860-54141879 MS.gene029898:CDS 45.0%
GAAGCGATTCTTCGCTTAAG+AGG + chr1.4:54142043-54142062 None:intergenic 45.0%
GAGAAAACCGAAGTACACGA+CGG + chr1.4:54142354-54142373 None:intergenic 45.0%
GAGAAGTTACGGGGTAAGAA+CGG + chr1.4:54142181-54142200 None:intergenic 45.0%
GGAAAGATAATCACGGACTC+CGG + chr1.4:54142291-54142310 None:intergenic 45.0%
GGATTGGGTTACTTGGAATC+AGG - chr1.4:54142724-54142743 MS.gene029898:CDS 45.0%
GTTAGCAATCTTGCTGAGGA+GGG - chr1.4:54142971-54142990 MS.gene029898:CDS 45.0%
TTGATTGGGGGATTGTTGTG+AGG + chr1.4:54141860-54141879 None:intergenic 45.0%
TTGGAGGTGGTGAAAGATCA+CGG + chr1.4:54142145-54142164 None:intergenic 45.0%
! ACCAGTTTCGCCGATTACAA+CGG + chr1.4:54142693-54142712 None:intergenic 45.0%
! AGCTTTTCCATCGGTCTTTG+AGG + chr1.4:54142828-54142847 None:intergenic 45.0%
! GGTATCGGAGGTTATTGTGA+GGG + chr1.4:54141898-54141917 None:intergenic 45.0%
! GTCGTGTACTTCGGTTTTCT+CGG - chr1.4:54142353-54142372 MS.gene029898:CDS 45.0%
! TCTCTAAGAGGATCATGGGT+CGG + chr1.4:54141920-54141939 None:intergenic 45.0%
! TTGATCTCAGCCGTTGATTG+GGG + chr1.4:54141873-54141892 None:intergenic 45.0%
!!! ACTTCGGTTTTCTCGGTGTT+TGG - chr1.4:54142360-54142379 MS.gene029898:CDS 45.0%
!!! GGTTTTGTTGGATCTCGATG+AGG + chr1.4:54142073-54142092 None:intergenic 45.0%
AATCCGAGACGAGATGGATC+GGG + chr1.4:54142017-54142036 None:intergenic 50.0%
AGACCGATGGAAAAGCTGCT+AGG - chr1.4:54142831-54142850 MS.gene029898:CDS 50.0%
AGGAAGAATCCGAGACGAGA+TGG + chr1.4:54142023-54142042 None:intergenic 50.0%
AGGGAAACCTCAAAGACCGA+TGG - chr1.4:54142818-54142837 MS.gene029898:CDS 50.0%
ATCCCATCCATGTGGAGTAC+CGG + chr1.4:54142510-54142529 None:intergenic 50.0%
CGGTGAAAAGCAACACGACA+CGG + chr1.4:54142559-54142578 None:intergenic 50.0%
CTCTTCTCCGTCGTGTACTT+CGG - chr1.4:54142344-54142363 MS.gene029898:CDS 50.0%
CTTCTTCGCTAACTGTGCAC+CGG - chr1.4:54142217-54142236 MS.gene029898:CDS 50.0%
GAATCCGAGACGAGATGGAT+CGG + chr1.4:54142018-54142037 None:intergenic 50.0%
GAATCGAGAACGCAGAAGCT+AGG + chr1.4:54142095-54142114 None:intergenic 50.0%
GACCGGCGGAAAGATAATCA+CGG + chr1.4:54142298-54142317 None:intergenic 50.0%
GCAACACGACACGGATAAAC+TGG + chr1.4:54142550-54142569 None:intergenic 50.0%
GGTTAGCAATCTTGCTGAGG+AGG - chr1.4:54142970-54142989 MS.gene029898:CDS 50.0%
GTCCGTGATTATCTTTCCGC+CGG - chr1.4:54142293-54142312 MS.gene029898:CDS 50.0%
TCCGTTGTAATCGGCGAAAC+TGG - chr1.4:54142689-54142708 MS.gene029898:CDS 50.0%
TCTTTCACCACCTCCAACTG+CGG - chr1.4:54142148-54142167 MS.gene029898:CDS 50.0%
TGAGGAGGAAGAAGAAGCTG+CGG - chr1.4:54143069-54143088 MS.gene029898:CDS 50.0%
TGTGATGAGTGAAACGACGG+TGG + chr1.4:54141829-54141848 None:intergenic 50.0%
! AAATTCGGGTTCACCCACAC+CGG - chr1.4:54141939-54141958 MS.gene029898:CDS 50.0%
! CTCTAAGAGGATCATGGGTC+GGG + chr1.4:54141919-54141938 None:intergenic 50.0%
! GAGCTTTTCAACCTCGATGC+CGG - chr1.4:54142269-54142288 MS.gene029898:CDS 50.0%
! GGCATCGAGGTTGAAAAGCT+CGG + chr1.4:54142270-54142289 None:intergenic 50.0%
! TGATCTCAGCCGTTGATTGG+GGG + chr1.4:54141872-54141891 None:intergenic 50.0%
!! CGCAGAAGCTAGGGTTTTGT+TGG + chr1.4:54142085-54142104 None:intergenic 50.0%
!! GGGTATCGGAGGTTATTGTG+AGG + chr1.4:54141899-54141918 None:intergenic 50.0%
!! GTGGGTTAGCAATCTTGCTG+AGG - chr1.4:54142967-54142986 MS.gene029898:CDS 50.0%
!! TAACTTGATTTGTGCCGCCG+AGG - chr1.4:54142463-54142482 MS.gene029898:CDS 50.0%
AAGGTCACCGGTACTCCACA+TGG - chr1.4:54142500-54142519 MS.gene029898:CDS 55.0%
ACCGGAAACCTCCGTTTCCA+TGG - chr1.4:54142235-54142254 MS.gene029898:CDS 55.0%
AGGAAACGGCGATCTGGATG+TGG + chr1.4:54141965-54141984 None:intergenic 55.0%
CAACCCGATCCATCTCGTCT+CGG - chr1.4:54142011-54142030 MS.gene029898:CDS 55.0%
CACCGGTACTCCACATGGAT+GGG - chr1.4:54142505-54142524 MS.gene029898:CDS 55.0%
CGGTAACTGAGTTTGACCGG+CGG + chr1.4:54142312-54142331 None:intergenic 55.0%
GAACGGTTAAACGCCGCAGT+TGG + chr1.4:54142164-54142183 None:intergenic 55.0%
GAGGAGATGGATCCGGTGAA+CGG + chr1.4:54142414-54142433 None:intergenic 55.0%
GAGGATCATGGGTCGGGTAT+CGG + chr1.4:54141913-54141932 None:intergenic 55.0%
GCCATGGAAACGGAGGTTTC+CGG + chr1.4:54142239-54142258 None:intergenic 55.0%
GGAAACCTCCGTTTCCATGG+CGG - chr1.4:54142238-54142257 MS.gene029898:CDS 55.0%
GGGGGATTGTTGTGAGGATG+AGG + chr1.4:54141854-54141873 None:intergenic 55.0%
GGTACGAACCGCCATGGAAA+CGG + chr1.4:54142249-54142268 None:intergenic 55.0%
TCACCGGATCCATCTCCTCA+TGG - chr1.4:54142415-54142434 MS.gene029898:CDS 55.0%
TCACCGGTACTCCACATGGA+TGG - chr1.4:54142504-54142523 MS.gene029898:CDS 55.0%
TTAAACGCCGCAGTTGGAGG+TGG + chr1.4:54142158-54142177 None:intergenic 55.0%
! GACGGTGGTGATCACCGTTT+TGG + chr1.4:54141814-54141833 None:intergenic 55.0%
! TGGATCGGGTTGTGTTGCAG+CGG + chr1.4:54142003-54142022 None:intergenic 55.0%
!! TCAACAGAAGTGCCGCCATG+AGG + chr1.4:54142433-54142452 None:intergenic 55.0%
AACGGCGATCTGGATGTGGC+CGG + chr1.4:54141961-54141980 None:intergenic 60.0%
AAGCTCGGTACGAACCGCCA+TGG + chr1.4:54142255-54142274 None:intergenic 60.0%
AAGCTGCGGAGGTTGCTCTC+AGG - chr1.4:54143083-54143102 MS.gene029898:CDS 60.0%
AATCACGGACTCCGGCATCG+AGG + chr1.4:54142283-54142302 None:intergenic 60.0%
ACGAACCGCCATGGAAACGG+AGG + chr1.4:54142246-54142265 None:intergenic 60.0%
AGACGGAGGAAACGGCGATC+TGG + chr1.4:54141971-54141990 None:intergenic 60.0%
AGCGACGGAGACGGAGGAAA+CGG + chr1.4:54141979-54141998 None:intergenic 60.0%
AGCTGCGGAGGTTGCTCTCA+GGG - chr1.4:54143084-54143103 MS.gene029898:CDS 60.0%
CCGCCATGAGGAGATGGATC+CGG + chr1.4:54142421-54142440 None:intergenic 60.0%
CCGGATCCATCTCCTCATGG+CGG - chr1.4:54142418-54142437 MS.gene029898:CDS 60.0%
CGGTTAAACGCCGCAGTTGG+AGG + chr1.4:54142161-54142180 None:intergenic 60.0%
GATCTGGATGTGGCCGGTGT+GGG + chr1.4:54141955-54141974 None:intergenic 60.0%
GGAGGAAGAAGAAGCTGCGG+AGG - chr1.4:54143072-54143091 MS.gene029898:CDS 60.0%
TTGTGTTGCAGCGGCAGCGA+CGG + chr1.4:54141994-54142013 None:intergenic 60.0%
!! GAAGTGCCGCCATGAGGAGA+TGG + chr1.4:54142427-54142446 None:intergenic 60.0%
!! GATCATGGGTCGGGTATCGG+AGG + chr1.4:54141910-54141929 None:intergenic 60.0%
CGATCTGGATGTGGCCGGTG+TGG + chr1.4:54141956-54141975 None:intergenic 65.0%
TGCAGCGGCAGCGACGGAGA+CGG + chr1.4:54141988-54142007 None:intergenic 70.0%
AGCGGCAGCGACGGAGACGG+AGG + chr1.4:54141985-54142004 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 54141807 54143126 54141807 ID=MS.gene029898
chr1.4 mRNA 54141807 54143126 54141807 ID=MS.gene029898.t1;Parent=MS.gene029898
chr1.4 exon 54141807 54143126 54141807 ID=MS.gene029898.t1.exon1;Parent=MS.gene029898.t1
chr1.4 CDS 54141807 54143126 54141807 ID=cds.MS.gene029898.t1;Parent=MS.gene029898.t1
Gene Sequence

>MS.gene029898

ATGGCCAAAACGGTGATCACCACCGTCGTTTCACTCATCACAATCCTCATCCTCACAACAATCCCCCAATCAACGGCTGAGATCAAATCCCTCACAATAACCTCCGATACCCGACCCATGATCCTCTTAGAGAAATTCGGGTTCACCCACACCGGCCACATCCAGATCGCCGTTTCCTCCGTCTCCGTCGCTGCCGCTGCAACACAACCCGATCCATCTCGTCTCGGATTCTTCCTCTTAAGCGAAGAATCGCTTCTACAAGTCCTCATCGAGATCCAACAAAACCCTAGCTTCTGCGTTCTCGATTCACATTACATCACGCGTTTATTCACTTTCCGTGATCTTTCACCACCTCCAACTGCGGCGTTTAACCGTTCTTACCCCGTAACTTCTCCGAATGAGTTCAGTCTCTTCTTCGCTAACTGTGCACCGGAAACCTCCGTTTCCATGGCGGTTCGTACCGAGCTTTTCAACCTCGATGCCGGAGTCCGTGATTATCTTTCCGCCGGTCAAACTCAGTTACCGTCTCTGTTCTTTCTCTTCTCCGTCGTGTACTTCGGTTTTCTCGGTGTTTGGTTCTATGTTTGTTACAATAACAAACGCTCCGTTCACCGGATCCATCTCCTCATGGCGGCACTTCTGTTGATGAAAGCTCTTAACTTGATTTGTGCCGCCGAGGATAAACATTATGTCAAGGTCACCGGTACTCCACATGGATGGGATGTTCTCTTTTACATTTTCCAGTTTATCCGTGTCGTGTTGCTTTTCACCGTCATTGTATTGATCGGAACTGGATGGTCGTTTTTGAAGCCGTTTTTGCAAGAAAGGGAGAAGAAGGTGCTTATGATTGTTATTCCTCTTCAGGTTTTGGCGAATTTAGCTTCCGTTGTAATCGGCGAAACTGGTCCTTTTATCAAGGATTGGGTTACTTGGAATCAGGTTTTCTTGCTTGTTGATATCATTTGTTGTTGTGCAATCATTTTTCCTATTGTATGGTCGATTAAATCGCTTAGGGAAACCTCAAAGACCGATGGAAAAGCTGCTAGGAATCTCGCGAAGTTAACACTTTTTAGGCAGTTTTACATTGTTGTTATCGGCTATCTTTACTTCACACGCATTGTTGTTTTTGCTCTCAAGACCATTACTGCTTATAAGTATAGGTGGGTTAGCAATCTTGCTGAGGAGGGTGCTAGTCTTGCATTTTACATTGTCATGTTTTACATGTTTATGCCGGTGGAGAAGAATGAGTATTTTGTGCTTGATGAGGAGGAAGAAGAAGCTGCGGAGGTTGCTCTCAGGGAAGAAGAGTTTGAGCTTTGA
Protein sequence

>MS.gene029898.t1

MAKTVITTVVSLITILILTTIPQSTAEIKSLTITSDTRPMILLEKFGFTHTGHIQIAVSSVSVAAAATQPDPSRLGFFLLSEESLLQVLIEIQQNPSFCVLDSHYITRLFTFRDLSPPPTAAFNRSYPVTSPNEFSLFFANCAPETSVSMAVRTELFNLDAGVRDYLSAGQTQLPSLFFLFSVVYFGFLGVWFYVCYNNKRSVHRIHLLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIKSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTITAYKYRWVSNLAEEGASLAFYIVMFYMFMPVEKNEYFVLDEEEEEAAEVALREEEFEL