AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030238

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030238.t1 MTR_4g124640 95.021 241 6 1 1 241 1 235 3.93e-170 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030238.t1 AT4G33250 77.477 222 45 2 19 240 9 225 7.93e-128 361

Find 54 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCATTAAATTCATTTC+TGG 0.142858 8.2:-8407531 None:intergenic
CTGGAAGGTTTCGTCAGTTC+TGG 0.234923 8.2:+8406324 MS.gene030238:CDS
TCGAGATCTGGAAGAATATC+AGG 0.283637 8.2:-8405083 None:intergenic
TGTTCTGTCTCACTATTTAG+AGG 0.302059 8.2:+8406232 MS.gene030238:CDS
ACCTCAGCAAGCACAGTTCT+AGG 0.306787 8.2:-8406981 None:intergenic
GCACAGTTCTAGGAATCTTT+TGG 0.326432 8.2:-8406971 None:intergenic
GGATCATTAAATTCATTTCT+GGG 0.389991 8.2:-8407530 None:intergenic
CGTTGCTCGCATATTGGTTA+AGG 0.392388 8.2:+8405400 MS.gene030238:CDS
GAATAGGCTATCAATGTAGA+AGG 0.397813 8.2:+8407416 MS.gene030238:intron
AGTTGGCTACTTGGTGTTCA+AGG 0.416300 8.2:-8407457 None:intergenic
ATAGTTTGTACCACACGTTC+CGG 0.420899 8.2:-8405860 None:intergenic
AAGAGACACAGGCTGAAGTC+TGG 0.427245 8.2:-8405830 None:intergenic
CCCAACCAGAGTTGGCTACT+TGG 0.435040 8.2:-8407466 None:intergenic
CGATGAGTTGACCCTTCCCC+TGG 0.436267 8.2:-8407502 None:intergenic
TGGAAGGTTTCGTCAGTTCT+GGG 0.441956 8.2:+8406325 MS.gene030238:CDS
ATAGAAAATCAGCTAAGAAT+AGG 0.455595 8.2:-8407611 None:intergenic
CGAAAATTATGTCAATGATC+AGG 0.458244 8.2:+8405103 MS.gene030238:CDS
TCCTTGCTGTTGTACTTGTA+CGG 0.463786 8.2:-8405000 None:intergenic
ACAACAGCAAGGACAAGGAC+AGG 0.464338 8.2:+8405010 MS.gene030238:CDS
CTCAATAACCCAACCAGAGT+TGG 0.468021 8.2:-8407474 None:intergenic
AATTATTGCAGGATTTGAGC+AGG 0.473491 8.2:+8406908 MS.gene030238:intron
CATATAGTTGAAGCTGTGCC+AGG 0.477852 8.2:+8406368 MS.gene030238:CDS
CTGCCTTCTTCGCCTCTACC+AGG 0.481697 8.2:+8405242 MS.gene030238:CDS
TCAGATCGTTGCTCGCATAT+TGG 0.484728 8.2:+8405394 MS.gene030238:CDS
CAATGTAGAAGGTTTATCCT+TGG 0.488911 8.2:+8407427 MS.gene030238:CDS
CACTGCAGATAGTGTACCAT+TGG 0.497181 8.2:+8407568 MS.gene030238:CDS
CATTAAATTCATTTCTGGGA+AGG 0.506668 8.2:-8407526 None:intergenic
TATTGAGAAAAGCCAGGGGA+AGG 0.508280 8.2:+8407490 MS.gene030238:CDS
GAACATGAATCGCATAGCCT+TGG 0.508528 8.2:-8406935 None:intergenic
CCAAGTAGCCAACTCTGGTT+GGG 0.517284 8.2:+8407466 MS.gene030238:CDS
TTGGGTTATTGAGAAAAGCC+AGG 0.525809 8.2:+8407484 MS.gene030238:CDS
GAAGGCAGAGATTTGATTCG+AGG 0.526051 8.2:-8405227 None:intergenic
CACAGGCTGAAGTCTGGAGC+TGG 0.532716 8.2:-8405824 None:intergenic
ATTCTTCTCTTCAGACTGGA+AGG 0.536061 8.2:+8406309 MS.gene030238:intron
ACCAAGTAGCCAACTCTGGT+TGG 0.542756 8.2:+8407465 MS.gene030238:CDS
GGATTTGAGCAGGCAATCCA+AGG 0.567214 8.2:+8406918 MS.gene030238:intron
TACCATTGGAGCACATTAGA+CGG 0.570341 8.2:+8407582 MS.gene030238:CDS
TGGAGCTGGCATAGCCATGA+GGG 0.570416 8.2:-8405810 None:intergenic
ATACCTGGTAGAGGCGAAGA+AGG 0.571105 8.2:-8405245 None:intergenic
GTGTTCAAGGAATTTGTCCA+AGG 0.573518 8.2:-8407444 None:intergenic
GAACACCAAGTAGCCAACTC+TGG 0.578457 8.2:+8407461 MS.gene030238:CDS
AGAAAATGGATACCTGGTAG+AGG 0.583966 8.2:-8405254 None:intergenic
TGGGTTATTGAGAAAAGCCA+GGG 0.586311 8.2:+8407485 MS.gene030238:CDS
ATCCGTCTAATGTGCTCCAA+TGG 0.587256 8.2:-8407584 None:intergenic
GAGCTGTTCGACAGTGTAAG+CGG 0.592715 8.2:-8405039 None:intergenic
TCCTAGAACTGTGCTTGCTG+AGG 0.608721 8.2:+8406980 MS.gene030238:CDS
CAACAGCAAGGACAAGGACA+GGG 0.614854 8.2:+8405011 MS.gene030238:CDS
ATTGAGAAAAGCCAGGGGAA+GGG 0.616926 8.2:+8407491 MS.gene030238:CDS
CAAGTACAACAGCAAGGACA+AGG 0.618746 8.2:+8405005 MS.gene030238:CDS
CTGTGAATATTAGCAAATGG+AGG 0.623742 8.2:+8406190 MS.gene030238:intron
CTGGAGCTGGCATAGCCATG+AGG 0.661849 8.2:-8405811 None:intergenic
CAGCAAGGACAAGGACAGGG+AGG 0.673719 8.2:+8405014 MS.gene030238:CDS
GCCGTACAAGTACAACAGCA+AGG 0.674180 8.2:+8404999 MS.gene030238:CDS
GGGTTATTGAGAAAAGCCAG+GGG 0.752929 8.2:+8407486 MS.gene030238:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTTAAAATGATTAAT+AGG + chr8.2:8405310-8405329 MS.gene030238:intron 10.0%
!! AACAAAAATTAATGAACAAA+AGG - chr8.2:8406168-8406187 None:intergenic 15.0%
!! ACAAAAATTAATGAACAAAA+GGG - chr8.2:8406167-8406186 None:intergenic 15.0%
!! CAAGTTTAACAAAAAATAAA+TGG - chr8.2:8407397-8407416 None:intergenic 15.0%
!!! ATTTGGTTTTGTTTTATAAT+AGG + chr8.2:8405787-8405806 MS.gene030238:intron 15.0%
!!! ATTTTTTGTTAAACTTGAAT+AGG + chr8.2:8407400-8407419 MS.gene030238:intron 15.0%
!!! TAAATGATTCTTGAAAATTT+TGG + chr8.2:8407191-8407210 MS.gene030238:intron 15.0%
!!! TTTTTTTGAACAAGAAATTT+TGG + chr8.2:8407229-8407248 MS.gene030238:intron 15.0%
!! AATGACGATTAATAAGAAAA+TGG - chr8.2:8405271-8405290 None:intergenic 20.0%
!! ATTTAAATGGACAAAACAAA+AGG - chr8.2:8407010-8407029 None:intergenic 20.0%
!! TACTATTACAATTGACTATT+AGG - chr8.2:8405983-8406002 None:intergenic 20.0%
!! TTATGAAAATAAGCTGAAAA+CGG - chr8.2:8405580-8405599 None:intergenic 20.0%
!!! GTAATAGTATGAATTTTACT+TGG + chr8.2:8405994-8406013 MS.gene030238:intron 20.0%
!!! TTACTTTAGAAAATTATTGC+AGG + chr8.2:8406897-8406916 MS.gene030238:intron 20.0%
! AGACTTAGAAAAACTATTAG+AGG + chr8.2:8406481-8406500 MS.gene030238:intron 25.0%
! ATATGGATGATAAAGAAGAA+AGG - chr8.2:8405132-8405151 None:intergenic 25.0%
! ATCATCCATATCACTTAATT+AGG + chr8.2:8405141-8405160 MS.gene030238:intron 25.0%
! ATGAAACCTGAAGAAATAAT+TGG - chr8.2:8405194-8405213 None:intergenic 25.0%
! ATTAAATCAGTATAATCACC+TGG - chr8.2:8406389-8406408 None:intergenic 25.0%
! ATTGTTTCGTTTATTCCTTT+GGG + chr8.2:8407166-8407185 MS.gene030238:intron 25.0%
! CTTGTCATTGATATGTTATT+GGG + chr8.2:8406724-8406743 MS.gene030238:intron 25.0%
! GAAATCAACTGATATCATAT+AGG - chr8.2:8407346-8407365 None:intergenic 25.0%
! GGATCATTAAATTCATTTCT+GGG - chr8.2:8407533-8407552 None:intergenic 25.0%
! TAAACCCTAATTAAGTGATA+TGG - chr8.2:8405149-8405168 None:intergenic 25.0%
! TAAACGAACCAACATTTAAA+TGG - chr8.2:8407023-8407042 None:intergenic 25.0%
! TATATCGAGTAATGCTAAAT+AGG - chr8.2:8406133-8406152 None:intergenic 25.0%
! TATTAGAGGATCTATTAAGA+AGG + chr8.2:8406495-8406514 MS.gene030238:intron 25.0%
! TATTGTTTCGTTTATTCCTT+TGG + chr8.2:8407165-8407184 MS.gene030238:intron 25.0%
! TCATCCATATCACTTAATTA+GGG + chr8.2:8405142-8405161 MS.gene030238:intron 25.0%
! TGGATCATTAAATTCATTTC+TGG - chr8.2:8407534-8407553 None:intergenic 25.0%
! TTAATAAGAAAATGGATACC+TGG - chr8.2:8405263-8405282 None:intergenic 25.0%
! TTACTGTGAATATTAGCAAA+TGG + chr8.2:8406187-8406206 MS.gene030238:intron 25.0%
! TTAGATGTCTATAATTGAGA+AGG + chr8.2:8405956-8405975 MS.gene030238:intron 25.0%
! TTATCACTTGCTCAAATATT+TGG + chr8.2:8405770-8405789 MS.gene030238:intron 25.0%
!! ATGATTCTTGAAAATTTTGG+CGG + chr8.2:8407194-8407213 MS.gene030238:intron 25.0%
!! TCAATTCCAATTATTTCTTC+AGG + chr8.2:8405185-8405204 MS.gene030238:intron 25.0%
!! TGTTTTGTCCATTTAAATGT+TGG + chr8.2:8407012-8407031 MS.gene030238:intron 25.0%
!! TTTTGAACAAGAAATTTTGG+CGG + chr8.2:8407232-8407251 MS.gene030238:intron 25.0%
!!! ATTGATTTTTTGAAAACCTG+TGG + chr8.2:8406791-8406810 MS.gene030238:intron 25.0%
!!! TTGATTTTTTGAAAACCTGT+GGG + chr8.2:8406792-8406811 MS.gene030238:intron 25.0%
AACCAAAAATCATATGCCTA+AGG + chr8.2:8405461-8405480 MS.gene030238:intron 30.0%
ACCAAAAATCATATGCCTAA+GGG + chr8.2:8405462-8405481 MS.gene030238:intron 30.0%
AGTGATAATATCAGCTATCT+TGG - chr8.2:8405758-8405777 None:intergenic 30.0%
ATATGACAAGCATTTCAAGA+TGG + chr8.2:8406687-8406706 MS.gene030238:intron 30.0%
CGAAAATTATGTCAATGATC+AGG + chr8.2:8405103-8405122 MS.gene030238:CDS 30.0%
CTCAATTATAGACATCTAAC+AGG - chr8.2:8405955-8405974 None:intergenic 30.0%
GCTTGTCATTGATATGTTAT+TGG + chr8.2:8406723-8406742 MS.gene030238:intron 30.0%
TAATATTCTTCTCTTCAGAC+TGG + chr8.2:8406305-8406324 MS.gene030238:intron 30.0%
TCCAAAACTTAGTTTAACTC+CGG + chr8.2:8407105-8407124 MS.gene030238:intron 30.0%
TGTTCTCATGCATAATTGAT+TGG + chr8.2:8405907-8405926 MS.gene030238:intron 30.0%
TTGTTTCGTTTATTCCTTTG+GGG + chr8.2:8407167-8407186 MS.gene030238:intron 30.0%
! CATTAAATTCATTTCTGGGA+AGG - chr8.2:8407529-8407548 None:intergenic 30.0%
! GCAGTGTTTTTCTTCAAAAT+TGG - chr8.2:8407554-8407573 None:intergenic 30.0%
! TGGTTTTTGATAAATCACTG+TGG + chr8.2:8406547-8406566 MS.gene030238:intron 30.0%
! TTGATGAGTTGGAAAAAACA+TGG + chr8.2:8406527-8406546 MS.gene030238:intron 30.0%
! TTTCTCAAATACAAGAGTGT+TGG + chr8.2:8407280-8407299 MS.gene030238:intron 30.0%
!! GTTTAGTATTGACTCTGATT+TGG + chr8.2:8406833-8406852 MS.gene030238:intron 30.0%
!! TGGGGATTTTTGTTTATCTT+TGG + chr8.2:8406811-8406830 MS.gene030238:intron 30.0%
!! TTGACATAATTTTCGAGATC+TGG - chr8.2:8405098-8405117 None:intergenic 30.0%
!!! AGTTTTGGAGAATTAATGCA+AGG - chr8.2:8407094-8407113 None:intergenic 30.0%
!!! TGATTTTTTGAAAACCTGTG+GGG + chr8.2:8406793-8406812 MS.gene030238:intron 30.0%
AATTATTGCAGGATTTGAGC+AGG + chr8.2:8406908-8406927 MS.gene030238:intron 35.0%
AGATAAACAAAAATCCCCAC+AGG - chr8.2:8406810-8406829 None:intergenic 35.0%
ATCAGATATTTGTAACCGCA+AGG - chr8.2:8406667-8406686 None:intergenic 35.0%
CAAGAATCATTTAACCCCAA+AGG - chr8.2:8407184-8407203 None:intergenic 35.0%
CAATGTAGAAGGTTTATCCT+TGG + chr8.2:8407427-8407446 MS.gene030238:CDS 35.0%
CTGTGAATATTAGCAAATGG+AGG + chr8.2:8406190-8406209 MS.gene030238:intron 35.0%
GAATAGGCTATCAATGTAGA+AGG + chr8.2:8407416-8407435 MS.gene030238:intron 35.0%
GCTTATCATGATAAGCACTT+GGG + chr8.2:8405696-8405715 MS.gene030238:intron 35.0%
GTTTCTCTTATAGTTTCTCC+AGG + chr8.2:8406429-8406448 MS.gene030238:intron 35.0%
TATGCGTTCATTCATCAAAC+CGG - chr8.2:8407127-8407146 None:intergenic 35.0%
TCGAGTAATGCTAAATAGGA+AGG - chr8.2:8406129-8406148 None:intergenic 35.0%
TGTTCTGTCTCACTATTTAG+AGG + chr8.2:8406232-8406251 MS.gene030238:CDS 35.0%
TTATAGACATCTAACAGGAG+TGG - chr8.2:8405950-8405969 None:intergenic 35.0%
! ACCGGAGTTAAACTAAGTTT+TGG - chr8.2:8407109-8407128 None:intergenic 35.0%
! AGGAATCTTTTGGTAAGTCA+AGG - chr8.2:8406964-8406983 None:intergenic 35.0%
! ATCTGAGAACTCATTTTCTC+AGG - chr8.2:8405380-8405399 None:intergenic 35.0%
! GTCAATCTTTTGTGTTACAC+AGG + chr8.2:8406016-8406035 MS.gene030238:intron 35.0%
! TCATATGCCTAAGGGATTTT+TGG + chr8.2:8405470-8405489 MS.gene030238:intron 35.0%
! TCCCTTAGGCATATGATTTT+TGG - chr8.2:8405466-8405485 None:intergenic 35.0%
! TGTTTTATAATAGGCCCTCA+TGG + chr8.2:8405796-8405815 MS.gene030238:intron 35.0%
!! GCTGTTTTCATAAGCTATCT+CGG - chr8.2:8405608-8405627 None:intergenic 35.0%
!! TTGACTCTGATTTGGCTTAT+AGG + chr8.2:8406841-8406860 MS.gene030238:intron 35.0%
AGAAAATGGATACCTGGTAG+AGG - chr8.2:8405257-8405276 None:intergenic 40.0%
AGCCAATCCAAAAATCCCTT+AGG - chr8.2:8405480-8405499 None:intergenic 40.0%
ATTCTTCTCTTCAGACTGGA+AGG + chr8.2:8406309-8406328 MS.gene030238:intron 40.0%
CCCCTAAATCACTAGAAGTA+GGG + chr8.2:8406456-8406475 MS.gene030238:intron 40.0%
CCCCTACTTCTAGTGATTTA+GGG - chr8.2:8406460-8406479 None:intergenic 40.0%
CCCTAAATCACTAGAAGTAG+GGG + chr8.2:8406457-8406476 MS.gene030238:intron 40.0%
CCCTACTTCTAGTGATTTAG+GGG - chr8.2:8406459-8406478 None:intergenic 40.0%
CGCTTATCATGATAAGCACT+TGG + chr8.2:8405695-8405714 MS.gene030238:intron 40.0%
GGATCTAGAGATTGATGAGT+TGG + chr8.2:8406516-8406535 MS.gene030238:intron 40.0%
GTGTTCAAGGAATTTGTCCA+AGG - chr8.2:8407447-8407466 None:intergenic 40.0%
GTTAATTGCGTCGTGTAACT+GGG + chr8.2:8406638-8406657 MS.gene030238:intron 40.0%
TACCATTGGAGCACATTAGA+CGG + chr8.2:8407582-8407601 MS.gene030238:CDS 40.0%
TCCCCTAAATCACTAGAAGT+AGG + chr8.2:8406455-8406474 MS.gene030238:intron 40.0%
TCCCCTACTTCTAGTGATTT+AGG - chr8.2:8406461-8406480 None:intergenic 40.0%
TCGAGATCTGGAAGAATATC+AGG - chr8.2:8405086-8405105 None:intergenic 40.0%
TCTTTGAACTGCGTAAGTCA+TGG - chr8.2:8406275-8406294 None:intergenic 40.0%
TGGGTTATTGAGAAAAGCCA+GGG + chr8.2:8407485-8407504 MS.gene030238:CDS 40.0%
TGTTAATTGCGTCGTGTAAC+TGG + chr8.2:8406637-8406656 MS.gene030238:intron 40.0%
TTGGGTTATTGAGAAAAGCC+AGG + chr8.2:8407484-8407503 MS.gene030238:CDS 40.0%
! ATAGTTTGTACCACACGTTC+CGG - chr8.2:8405863-8405882 None:intergenic 40.0%
!! CCTGTGTCTCTTTTTGATTC+CGG + chr8.2:8405841-8405860 MS.gene030238:CDS 40.0%
!! TCCTTGCTGTTGTACTTGTA+CGG - chr8.2:8405003-8405022 None:intergenic 40.0%
!! TGCCTAAGGGATTTTTGGAT+TGG + chr8.2:8405475-8405494 MS.gene030238:intron 40.0%
!!! GCACAGTTCTAGGAATCTTT+TGG - chr8.2:8406974-8406993 None:intergenic 40.0%
ATCCGTCTAATGTGCTCCAA+TGG - chr8.2:8407587-8407606 None:intergenic 45.0%
ATGTAGCCAACCTCACTTAG+TGG + chr8.2:8406583-8406602 MS.gene030238:intron 45.0%
ATTGAGAAAAGCCAGGGGAA+GGG + chr8.2:8407491-8407510 MS.gene030238:CDS 45.0%
CAACCTCACTTAGTGGGATA+AGG + chr8.2:8406590-8406609 MS.gene030238:intron 45.0%
CAAGTACAACAGCAAGGACA+AGG + chr8.2:8405005-8405024 MS.gene030238:CDS 45.0%
CACTGCAGATAGTGTACCAT+TGG + chr8.2:8407568-8407587 MS.gene030238:CDS 45.0%
CATATAGTTGAAGCTGTGCC+AGG + chr8.2:8406368-8406387 MS.gene030238:CDS 45.0%
CCGGAATCAAAAAGAGACAC+AGG - chr8.2:8405844-8405863 None:intergenic 45.0%
CTCAATAACCCAACCAGAGT+TGG - chr8.2:8407477-8407496 None:intergenic 45.0%
CTTATCCCACTAAGTGAGGT+TGG - chr8.2:8406592-8406611 None:intergenic 45.0%
GAACATGAATCGCATAGCCT+TGG - chr8.2:8406938-8406957 None:intergenic 45.0%
GGGTTATTGAGAAAAGCCAG+GGG + chr8.2:8407486-8407505 MS.gene030238:CDS 45.0%
TAGTGATTTAGGGGAAGACC+TGG - chr8.2:8406450-8406469 None:intergenic 45.0%
TATTGAGAAAAGCCAGGGGA+AGG + chr8.2:8407490-8407509 MS.gene030238:CDS 45.0%
TCACTTAGTGGGATAAGGCT+TGG + chr8.2:8406595-8406614 MS.gene030238:intron 45.0%
TCAGATCGTTGCTCGCATAT+TGG + chr8.2:8405394-8405413 MS.gene030238:CDS 45.0%
TGGAAGGTTTCGTCAGTTCT+GGG + chr8.2:8406325-8406344 MS.gene030238:CDS 45.0%
TGTAGCCAACCTCACTTAGT+GGG + chr8.2:8406584-8406603 MS.gene030238:intron 45.0%
! AAGCCTTATCCCACTAAGTG+AGG - chr8.2:8406596-8406615 None:intergenic 45.0%
! CGTTGCTCGCATATTGGTTA+AGG + chr8.2:8405400-8405419 MS.gene030238:CDS 45.0%
! GAAGGCAGAGATTTGATTCG+AGG - chr8.2:8405230-8405249 None:intergenic 45.0%
!! AGTTGGCTACTTGGTGTTCA+AGG - chr8.2:8407460-8407479 None:intergenic 45.0%
!! CTTTTTGATTCCGGAACGTG+TGG + chr8.2:8405850-8405869 MS.gene030238:CDS 45.0%
!! TCAGCTATCTTGGCTCTGTT+TGG - chr8.2:8405748-8405767 None:intergenic 45.0%
AAGAGACACAGGCTGAAGTC+TGG - chr8.2:8405833-8405852 None:intergenic 50.0%
ACAACAGCAAGGACAAGGAC+AGG + chr8.2:8405010-8405029 MS.gene030238:CDS 50.0%
ACCAAGTAGCCAACTCTGGT+TGG + chr8.2:8407465-8407484 MS.gene030238:CDS 50.0%
ACCTCAGCAAGCACAGTTCT+AGG - chr8.2:8406984-8407003 None:intergenic 50.0%
ATACCTGGTAGAGGCGAAGA+AGG - chr8.2:8405248-8405267 None:intergenic 50.0%
CAACAGCAAGGACAAGGACA+GGG + chr8.2:8405011-8405030 MS.gene030238:CDS 50.0%
CCAAGTAGCCAACTCTGGTT+GGG + chr8.2:8407466-8407485 MS.gene030238:CDS 50.0%
CTGGAAGGTTTCGTCAGTTC+TGG + chr8.2:8406324-8406343 MS.gene030238:CDS 50.0%
GAACACCAAGTAGCCAACTC+TGG + chr8.2:8407461-8407480 MS.gene030238:CDS 50.0%
GAGCTGTTCGACAGTGTAAG+CGG - chr8.2:8405042-8405061 None:intergenic 50.0%
GCCGTACAAGTACAACAGCA+AGG + chr8.2:8404999-8405018 MS.gene030238:CDS 50.0%
GGATTTGAGCAGGCAATCCA+AGG + chr8.2:8406918-8406937 MS.gene030238:intron 50.0%
! TCCTAGAACTGTGCTTGCTG+AGG + chr8.2:8406980-8406999 MS.gene030238:CDS 50.0%
CCCAACCAGAGTTGGCTACT+TGG - chr8.2:8407469-8407488 None:intergenic 55.0%
CGTGTAACTGGGAAGCCTTG+CGG + chr8.2:8406649-8406668 MS.gene030238:intron 55.0%
TGGAGCTGGCATAGCCATGA+GGG - chr8.2:8405813-8405832 None:intergenic 55.0%
CAGCAAGGACAAGGACAGGG+AGG + chr8.2:8405014-8405033 MS.gene030238:CDS 60.0%
CTGCCTTCTTCGCCTCTACC+AGG + chr8.2:8405242-8405261 MS.gene030238:CDS 60.0%
CTGGAGCTGGCATAGCCATG+AGG - chr8.2:8405814-8405833 None:intergenic 60.0%
! CACAGGCTGAAGTCTGGAGC+TGG - chr8.2:8405827-8405846 None:intergenic 60.0%
! CGATGAGTTGACCCTTCCCC+TGG - chr8.2:8407505-8407524 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 8404975 8407625 8404975 ID=MS.gene030238
chr8.2 mRNA 8404975 8407625 8404975 ID=MS.gene030238.t1;Parent=MS.gene030238
chr8.2 exon 8404975 8405124 8404975 ID=MS.gene030238.t1.exon1;Parent=MS.gene030238.t1
chr8.2 CDS 8404975 8405124 8404975 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8405207 8405263 8405207 ID=MS.gene030238.t1.exon2;Parent=MS.gene030238.t1
chr8.2 CDS 8405207 8405263 8405207 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8405371 8405421 8405371 ID=MS.gene030238.t1.exon3;Parent=MS.gene030238.t1
chr8.2 CDS 8405371 8405421 8405371 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8405809 8405871 8405809 ID=MS.gene030238.t1.exon4;Parent=MS.gene030238.t1
chr8.2 CDS 8405809 8405871 8405809 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8406203 8406253 8406203 ID=MS.gene030238.t1.exon5;Parent=MS.gene030238.t1
chr8.2 CDS 8406203 8406253 8406203 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8406323 8406389 8406323 ID=MS.gene030238.t1.exon6;Parent=MS.gene030238.t1
chr8.2 CDS 8406323 8406389 8406323 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8406919 8407001 8406919 ID=MS.gene030238.t1.exon7;Parent=MS.gene030238.t1
chr8.2 CDS 8406919 8407001 8406919 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
chr8.2 exon 8407422 8407625 8407422 ID=MS.gene030238.t1.exon8;Parent=MS.gene030238.t1
chr8.2 CDS 8407422 8407625 8407422 ID=cds.MS.gene030238.t1;Parent=MS.gene030238.t1
Gene Sequence

>MS.gene030238

ATGGGAAGAGAAGCAGCAGCAGCAGCCGTACAAGTACAACAGCAAGGACAAGGACAGGGAGGAACCGCTTACACTGTCGAACAGCTCGTTGCATTTAATCGTTACAATCCTGATATTCTTCCAGATCTCGAAAATTATGTCAATGATCAGGTAACCTTTCTTCTTTATCATCCATATCACTTAATTAGGGTTTATACAATTCAATTCAATTCAATTCCAATTATTTCTTCAGGTTTCATCGCAAACTTACAGCCTCGAATCAAATCTCTGCCTTCTTCGCCTCTACCAGGTATCCATTTTCTTATTAATCGTCATTTTCAGATTATTGCTTAATCACAATTTTAAAATGATTAATAGGTTGATTATGAGTAATTGTTTGTTTGCTTATTATTGCAGTTTGAACCTGAGAAAATGAGTTCTCAGATCGTTGCTCGCATATTGGTTAAGGTATTCAATTCTATTTTTTTACTTTGCTTATTACTTTCGAACCAAAAATCATATGCCTAAGGGATTTTTGGATTGGCTTATTTGAGCTTATTTAAGTTTTGTAAGACTGTCTGAGAGAACTTATGAAAACAGATTATTACAACATTGTTCAGAAGCCGTTTTCAGCTTATTTTCATAAGTTCTCCGAGATAGCTTATGAAAACAGCTTATAGCTTATATCAAAACAATTTAACTTTATTTTATCTTTTGCTATAGAAATAGCTTATACATAAGCGCTTATCATGATAAGCACTTGGGTTATAAGCTGCAAATAATCTGTTTATCCAAACAGAGCCAAGATAGCTGATATTATCACTTGCTCAAATATTTGGTTTTGTTTTATAATAGGCCCTCATGGCTATGCCAGCTCCAGACTTCAGCCTGTGTCTCTTTTTGATTCCGGAACGTGTGGTACAAACTATTCTTTCTTTTGTACTTGCTTTTCTTGTTCTCATGCATAATTGATTGGATATTTGAATGATTCAGCCACTCCTGTTAGATGTCTATAATTGAGAAGGACCTAATAGTCAATTGTAATAGTATGAATTTTACTTGGTCAATCTTTTGTGTTACACAGGATTTCTCTGTGTCTCTGATATTCATCTAGCTGTAGAAATTTTCTATTTGAATTTGAATTGCTAATTGTAACGATGATATGTTGATTTCCTTCCTATTTAGCATTACTCGATATAACTTTTTGATTCCCTTTTGTTCATTAATTTTTGTTTACTGTGAATATTAGCAAATGGAGGAGCAGTTCAAGACTCTGATTGTTCTGTCTCACTATTTAGAGGTATGCATCAATTAGTTGCCATGACTTACGCAGTTCAAAGAAATCATAAATTAATATTCTTCTCTTCAGACTGGAAGGTTTCGTCAGTTCTGGGATGAAGCATCGAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGTGATTATACTGATTTAATTTTGCTATATCTTGTTATTTGTTTCTCTTATAGTTTCTCCAGGTCTTCCCCTAAATCACTAGAAGTAGGGGAAGACTTAGAAAAACTATTAGAGGATCTATTAAGAAGGATCTAGAGATTGATGAGTTGGAAAAAACATGGTTTTTGATAAATCACTGTGGCGTCATTTGATTCATGTAGCCAACCTCACTTAGTGGGATAAGGCTTGGTTGTTGTTAATATATATCTTGTTAATTGCGTCGTGTAACTGGGAAGCCTTGCGGTTACAAATATCTGATATATGACAAGCATTTCAAGATGGAGCTTTATCATATGCTTGTCATTGATATGTTATTGGGAAATAATAGAGTTGTGCTGCTACAATATCATATATATGTCAGACATTGATTTTTTGAAAACCTGTGGGGATTTTTGTTTATCTTTGGTTTAGTATTGACTCTGATTTGGCTTATAGGTTCAACTTTGTTAATACTTGCTTTTATGCTAGCTTACTTTAGAAAATTATTGCAGGATTTGAGCAGGCAATCCAAGGCTATGCGATTCATGTTCTATCCTTGACTTACCAAAAGATTCCTAGAACTGTGCTTGCTGAGGTATGCCTTTTGTTTTGTCCATTTAAATGTTGGTTCGTTTATGACTGAAAAATAGTTTTTGTGTAGCTAGTCTTTGCTAGTTCAAAGTACCTTGCATTAATTCTCCAAAACTTAGTTTAACTCCGGTTTGATGAATGAACGCATACATGATACAATACAACACTATTGTTTCGTTTATTCCTTTGGGGTTAAATGATTCTTGAAAATTTTGGCGGTTAGTTTTTTTTTTTTTTTGAACAAGAAATTTTGGCGGTTAGTTATTTGAATTCTTCTCACTGTTTCTCAAATACAAGAGTGTTGGTTTCTGTAGAAATTGTTTTTATTTTGAAGTCTTGTACGTACCTATATGATATCAGTTGATTTCTCATATTACTTTGAAGTATATAATAAGACCATTTATTTTTTGTTAAACTTGAATAGGCTATCAATGTAGAAGGTTTATCCTTGGACAAATTCCTTGAACACCAAGTAGCCAACTCTGGTTGGGTTATTGAGAAAAGCCAGGGGAAGGGTCAACTCATCGTCCTTCCCAGAAATGAATTTAATGATCCAATTTTGAAGAAAAACACTGCAGATAGTGTACCATTGGAGCACATTAGACGGATCTTTCCTATTCTTAGCTGA
Protein sequence

>MS.gene030238.t1

MGREAAAAAVQVQQQGQGQGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKFLEHQVANSGWVIEKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHIRRIFPILS