Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030373.t1 | XP_024627736.1 | 98 | 979 | 20 | 0 | 1 | 979 | 1 | 979 | 0.00E+00 | 1930.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030373.t1 | Q8H0S9 | 82.8 | 888 | 147 | 2 | 93 | 979 | 1 | 883 | 0.0e+00 | 1505.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030373.t1 | A0A072TU77 | 97.5 | 979 | 20 | 1 | 1 | 979 | 1 | 975 | 0.0e+00 | 1916.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030373 | MS.gene033983 | PPI |
| MS.gene030373 | MS.gene36285 | PPI |
| MS.gene030373 | MS.gene79543 | PPI |
| MS.gene030373 | MS.gene89100 | PPI |
| MS.gene030373 | MS.gene33357 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030373.t1 | MTR_8g098525 | 97.549 | 979 | 20 | 1 | 1 | 979 | 1 | 975 | 0.0 | 1983 |
| MS.gene030373.t1 | MTR_8g098545 | 72.274 | 321 | 38 | 6 | 443 | 760 | 120 | 392 | 4.21e-146 | 440 |
| MS.gene030373.t1 | MTR_8g098545 | 74.638 | 138 | 23 | 3 | 93 | 228 | 1 | 128 | 2.83e-55 | 197 |
| MS.gene030373.t1 | MTR_8g098535 | 86.029 | 136 | 19 | 0 | 819 | 954 | 1 | 136 | 1.49e-78 | 252 |
| MS.gene030373.t1 | MTR_3g104720 | 27.123 | 365 | 241 | 10 | 198 | 548 | 112 | 465 | 3.31e-24 | 110 |
| MS.gene030373.t1 | MTR_8g018790 | 25.654 | 382 | 247 | 12 | 189 | 550 | 105 | 469 | 2.99e-18 | 90.9 |
| MS.gene030373.t1 | MTR_8g018790 | 26.286 | 350 | 229 | 11 | 213 | 550 | 4 | 336 | 4.57e-18 | 90.1 |
| MS.gene030373.t1 | MTR_1g116230 | 22.689 | 357 | 219 | 10 | 213 | 541 | 127 | 454 | 5.60e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030373.t1 | AT1G63770 | 79.044 | 983 | 194 | 6 | 1 | 979 | 1 | 975 | 0.0 | 1613 |
| MS.gene030373.t1 | AT1G63770 | 79.044 | 983 | 194 | 6 | 1 | 979 | 1 | 975 | 0.0 | 1613 |
| MS.gene030373.t1 | AT1G63770 | 78.090 | 995 | 194 | 7 | 1 | 979 | 1 | 987 | 0.0 | 1605 |
| MS.gene030373.t1 | AT1G63770 | 82.770 | 888 | 147 | 2 | 93 | 979 | 1 | 883 | 0.0 | 1551 |
| MS.gene030373.t1 | AT1G63770 | 81.667 | 900 | 147 | 3 | 93 | 979 | 1 | 895 | 0.0 | 1540 |
| MS.gene030373.t1 | AT1G63770 | 76.596 | 940 | 204 | 7 | 1 | 932 | 1 | 932 | 0.0 | 1489 |
| MS.gene030373.t1 | AT1G63770 | 76.058 | 898 | 199 | 7 | 1 | 890 | 1 | 890 | 0.0 | 1408 |
| MS.gene030373.t1 | AT4G33090 | 25.978 | 358 | 244 | 9 | 198 | 543 | 112 | 460 | 2.64e-23 | 107 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAGGCTGGACAAATTT+TGG | 0.195193 | 4.4:+5945736 | MS.gene030373:CDS |
| TTCTGTTGGCATCGCCATTT+TGG | 0.229107 | 4.4:-5939333 | None:intergenic |
| GGGGCTTTGCAATCTGTTTC+AGG | 0.231479 | 4.4:+5943350 | MS.gene030373:CDS |
| GCTGCAATATTGGGAGTTAT+TGG | 0.238507 | 4.4:+5941324 | MS.gene030373:CDS |
| TTAGTTTCAGTTCATATAAA+TGG | 0.251370 | 4.4:+5939710 | MS.gene030373:CDS |
| TGCAGACTATGCTGCAATAT+TGG | 0.262232 | 4.4:+5941314 | MS.gene030373:CDS |
| AAAGAAAATGTATGTCCTTC+TGG | 0.295805 | 4.4:-5943080 | None:intergenic |
| GTATACTTTGCCATTATATC+AGG | 0.308903 | 4.4:-5940444 | None:intergenic |
| GCGGCAAACATTATGCTGTT+TGG | 0.323042 | 4.4:+5940625 | MS.gene030373:CDS |
| GAGGGGATTGGATTGTTAAA+TGG | 0.332826 | 4.4:-5940063 | None:intergenic |
| CGGCAAACATTATGCTGTTT+GGG | 0.335712 | 4.4:+5940626 | MS.gene030373:CDS |
| TAGGGTCTTTACAAGTCATC+TGG | 0.340933 | 4.4:+5940268 | MS.gene030373:intron |
| GCGGCCACACTCTTACATTA+AGG | 0.345414 | 4.4:+5942167 | MS.gene030373:CDS |
| GGCTTCTCCCGAGGCTGCTT+CGG | 0.348162 | 4.4:+5941290 | MS.gene030373:CDS |
| ACAGGATCGGCCTGATATAA+TGG | 0.349393 | 4.4:+5940434 | MS.gene030373:intron |
| AACCCACCTTAGTGACTCTA+AGG | 0.351287 | 4.4:-5943400 | None:intergenic |
| GGCCTGTTCCATCTTTGTTA+AGG | 0.353116 | 4.4:+5945512 | MS.gene030373:CDS |
| TTATGCAGTATTTCCACAAT+TGG | 0.355828 | 4.4:+5941462 | MS.gene030373:intron |
| TAAACCCAGTAGACTCTTCC+TGG | 0.359224 | 4.4:-5938774 | None:intergenic |
| GCCTGGTGAGGGAGAAATAA+TGG | 0.363785 | 4.4:+5946000 | MS.gene030373:CDS |
| ATAAATTACATATTAAAATC+TGG | 0.367342 | 4.4:-5940998 | None:intergenic |
| GAACCAATGGTTTATTATGT+TGG | 0.368205 | 4.4:-5945793 | None:intergenic |
| TGCCTTAGTCGCCGGACAAC+TGG | 0.370988 | 4.4:+5940680 | MS.gene030373:CDS |
| GCCTGTTCCATCTTTGTTAA+GGG | 0.374451 | 4.4:+5945513 | MS.gene030373:CDS |
| TATCCAGTATTGTTGTCTAA+TGG | 0.378189 | 4.4:+5940495 | MS.gene030373:CDS |
| GCAGACTATGCTGCAATATT+GGG | 0.380911 | 4.4:+5941315 | MS.gene030373:CDS |
| CAAGCAGTGTCTGACATTCC+TGG | 0.382633 | 4.4:+5947273 | MS.gene030373:CDS |
| TTTCCATTAGACAACAATAC+TGG | 0.386158 | 4.4:-5940498 | None:intergenic |
| GCAAGTTGAAGAATCCAAAA+TGG | 0.386732 | 4.4:+5939319 | MS.gene030373:CDS |
| GACACATTTACTACCCGTTC+AGG | 0.389755 | 4.4:+5940714 | MS.gene030373:CDS |
| ATGAGAGAGTACACTTTGTT+GGG | 0.391177 | 4.4:-5947351 | None:intergenic |
| TCAAGCAAACCTACCGCAAT+AGG | 0.395712 | 4.4:-5943284 | None:intergenic |
| CGCACATTCTCAACATTACC+AGG | 0.399662 | 4.4:-5947291 | None:intergenic |
| TTTGATTATTTAGGAGTTTG+TGG | 0.401530 | 4.4:+5945961 | MS.gene030373:intron |
| TTTCAATTCCAAGCTTGTAT+TGG | 0.401637 | 4.4:+5941269 | MS.gene030373:CDS |
| CGAATGTACAAAACCTTGTT+GGG | 0.403390 | 4.4:+5942708 | MS.gene030373:CDS |
| AATGAGAGAGTACACTTTGT+TGG | 0.404151 | 4.4:-5947352 | None:intergenic |
| TCCACAATTGGACTGGCAAC+AGG | 0.404803 | 4.4:+5941474 | MS.gene030373:CDS |
| GAAGTGTTTACTTTGACAAC+AGG | 0.405411 | 4.4:-5943050 | None:intergenic |
| GATAAGTAACCTGTGGAAAC+TGG | 0.407462 | 4.4:-5941833 | None:intergenic |
| AGATCAGATTCAAGACGAAT+AGG | 0.408417 | 4.4:-5945547 | None:intergenic |
| GTTGAATTCATCAGAATCAT+TGG | 0.409891 | 4.4:-5945599 | None:intergenic |
| CTCCAGTTGTCCGGCGACTA+AGG | 0.411170 | 4.4:-5940682 | None:intergenic |
| GTAGGTTTGCTTGATTCAAC+TGG | 0.416913 | 4.4:+5943293 | MS.gene030373:CDS |
| CTTTCCAGGTAGTGAACAAA+TGG | 0.420055 | 4.4:+5947241 | MS.gene030373:intron |
| GCCAACAGAAATATTCTTGA+AGG | 0.421916 | 4.4:+5939346 | MS.gene030373:CDS |
| GACCGAGCAGTTTGCAGCAT+TGG | 0.427494 | 4.4:+5946620 | MS.gene030373:CDS |
| CGAACAGTATGAACAGCATC+AGG | 0.428093 | 4.4:-5946043 | None:intergenic |
| CAAGAGATCCCGCCAACTCC+AGG | 0.436675 | 4.4:+5943233 | MS.gene030373:CDS |
| TGGCCGCACTGGATGGGCCA+TGG | 0.437513 | 4.4:-5942151 | None:intergenic |
| ACTGTCTCAAAGTAGTAATC+AGG | 0.438474 | 4.4:-5939380 | None:intergenic |
| AACTCCAGGGCAGTCAGTTA+AGG | 0.443697 | 4.4:+5943247 | MS.gene030373:CDS |
| TTTCCTCTATTTACCACGAC+GGG | 0.443822 | 4.4:+5943330 | MS.gene030373:CDS |
| ATACTGTTCGGTCTTTCATC+AGG | 0.445412 | 4.4:+5946056 | MS.gene030373:CDS |
| GCTGTGTTTCCTCGCGTTGA+AGG | 0.448348 | 4.4:+5939556 | MS.gene030373:CDS |
| GTCTGCATCCGAAGCAGCCT+CGG | 0.449809 | 4.4:-5941298 | None:intergenic |
| GGACACCTTCCTTCCTGAAC+GGG | 0.451324 | 4.4:-5940727 | None:intergenic |
| AACAAAGTGTACTCTCTCAT+TGG | 0.451462 | 4.4:+5947354 | MS.gene030373:CDS |
| GTTTCAATTCATGGCACGTT+TGG | 0.451608 | 4.4:+5938724 | None:intergenic |
| TGTATTGTTGCAGGCCCAGC+TGG | 0.451920 | 4.4:+5948206 | MS.gene030373:intron |
| ATTTACCACTAGGAGGGGAT+TGG | 0.453297 | 4.4:-5940075 | None:intergenic |
| CTGCAGGTGTCCAGATCCTA+AGG | 0.453974 | 4.4:-5940749 | None:intergenic |
| TCGAATGTACAAAACCTTGT+TGG | 0.454357 | 4.4:+5942707 | MS.gene030373:CDS |
| TATACTATCTGACTCAAGTC+TGG | 0.458119 | 4.4:+5945847 | MS.gene030373:CDS |
| TATAAATGGCAAGGCATTGA+AGG | 0.460112 | 4.4:+5939724 | MS.gene030373:CDS |
| GGGAGAAATAATGGACATAA+TGG | 0.462842 | 4.4:+5946009 | MS.gene030373:CDS |
| CCTGGTTGGACAGGGTGACT+TGG | 0.463142 | 4.4:+5940521 | MS.gene030373:CDS |
| GAGTAGGAAGCTAATTTGTT+CGG | 0.465821 | 4.4:+5939280 | MS.gene030373:CDS |
| GGAAGGTGTCCCTTAGGATC+TGG | 0.466228 | 4.4:+5940739 | MS.gene030373:CDS |
| CAAGTGGCAGAATGATTACT+TGG | 0.468682 | 4.4:+5946701 | MS.gene030373:CDS |
| TATATAGGTTGCCTCAAGAA+TGG | 0.470743 | 4.4:+5948021 | MS.gene030373:intron |
| ATACATAGCATGTGCAGTCT+TGG | 0.471435 | 4.4:-5940781 | None:intergenic |
| ATGATTCTGATGAATTCAAC+CGG | 0.473559 | 4.4:+5945602 | MS.gene030373:CDS |
| TACATAGCATGTGCAGTCTT+GGG | 0.475653 | 4.4:-5940780 | None:intergenic |
| GGCCGCACTGGATGGGCCAT+GGG | 0.476301 | 4.4:-5942150 | None:intergenic |
| ACTGACTGCCCTGGAGTTGG+CGG | 0.479991 | 4.4:-5943242 | None:intergenic |
| TTGTTCTGCAAAAGAATTGT+TGG | 0.482089 | 4.4:+5939123 | MS.gene030373:CDS |
| TAATGGAAACCTGGTTGGAC+AGG | 0.483118 | 4.4:+5940512 | MS.gene030373:CDS |
| CCCCTTAACAAAGATGGAAC+AGG | 0.483316 | 4.4:-5945514 | None:intergenic |
| GAGAAGATCATGTCTACTAA+TGG | 0.484516 | 4.4:+5948228 | MS.gene030373:CDS |
| GTCTTGGGTACGTCCTCTGC+AGG | 0.485166 | 4.4:-5940765 | None:intergenic |
| TAGACATGATCTTCTCCAGC+TGG | 0.485899 | 4.4:-5948221 | None:intergenic |
| TAAATTACATATTAAAATCT+GGG | 0.487279 | 4.4:-5940997 | None:intergenic |
| TTAACTGACTGCCCTGGAGT+TGG | 0.490776 | 4.4:-5943245 | None:intergenic |
| CAGATAACAAGGCTTCTTGA+AGG | 0.491235 | 4.4:-5940655 | None:intergenic |
| TATTTAGGAGTTTGTGGCAA+AGG | 0.491413 | 4.4:+5945967 | MS.gene030373:intron |
| CTGATGCTGTTCATACTGTT+CGG | 0.492246 | 4.4:+5946044 | MS.gene030373:CDS |
| CAGGAAGGAAGGTGTCCCTT+AGG | 0.492248 | 4.4:+5940733 | MS.gene030373:CDS |
| AATGTTCTTCAAAGCTCGTC+TGG | 0.495959 | 4.4:-5946298 | None:intergenic |
| AAAACCTTGTTGGGAAGTCA+AGG | 0.496990 | 4.4:+5942717 | MS.gene030373:CDS |
| ATCTCTGCTCTCCAGTTGTC+CGG | 0.497252 | 4.4:-5940691 | None:intergenic |
| TCCTTCAAGAATATTTCTGT+TGG | 0.497891 | 4.4:-5939347 | None:intergenic |
| GGATTGTAGTAGAGACTGAT+TGG | 0.498420 | 4.4:-5943379 | None:intergenic |
| CAACAATATTGAAGAGATCC+AGG | 0.499390 | 4.4:-5940970 | None:intergenic |
| GAAATGACACGAACGGGAGC+AGG | 0.499986 | 4.4:-5938803 | None:intergenic |
| GTTGAAAACAATAGGAGCTC+AGG | 0.505449 | 4.4:+5946246 | MS.gene030373:CDS |
| TCCTTTGCATGGAAGTTCAC+AGG | 0.505508 | 4.4:-5947393 | None:intergenic |
| CTGTATCCCCTTAACAAAGA+TGG | 0.506334 | 4.4:-5945520 | None:intergenic |
| TCCATTATTTCTCCCTCACC+AGG | 0.507418 | 4.4:-5946001 | None:intergenic |
| ATATAGACATTTCCTTGCAT+CGG | 0.508106 | 4.4:+5938998 | MS.gene030373:CDS |
| ATGTAAGAGTGTGGCCGCAC+TGG | 0.508351 | 4.4:-5942162 | None:intergenic |
| GTGAACTTCCATGCAAAGGA+TGG | 0.509407 | 4.4:+5947396 | MS.gene030373:CDS |
| TTCCATGCAAAGGATGGGTC+GGG | 0.512310 | 4.4:+5947402 | MS.gene030373:CDS |
| ATGGACAGGTACTCTCAAGC+TGG | 0.517263 | 4.4:+5943023 | MS.gene030373:intron |
| AAGAGTGTGGCCGCACTGGA+TGG | 0.517403 | 4.4:-5942158 | None:intergenic |
| AGCCCCGTCGTGGTAAATAG+AGG | 0.518125 | 4.4:-5943333 | None:intergenic |
| TTTCCAACATAATAAACCAT+TGG | 0.521326 | 4.4:+5945790 | MS.gene030373:CDS |
| GGCAATAACTCTGCCTGGTG+AGG | 0.521590 | 4.4:+5945988 | MS.gene030373:CDS |
| ATGTTTATTCCTATTGCGGT+AGG | 0.521964 | 4.4:+5943275 | MS.gene030373:CDS |
| GGCCAATGCTGCAAACTGCT+CGG | 0.527495 | 4.4:-5946622 | None:intergenic |
| ACCTGTTGCCAGTCCAATTG+TGG | 0.529552 | 4.4:-5941475 | None:intergenic |
| GCTTTGAAGAACATTGCTCT+TGG | 0.530232 | 4.4:+5946306 | MS.gene030373:CDS |
| TACAATCCTTAGAGTCACTA+AGG | 0.530410 | 4.4:+5943394 | MS.gene030373:CDS |
| CAGTATTTCCACAATTGGAC+TGG | 0.532172 | 4.4:+5941467 | MS.gene030373:intron |
| TTCAGTTCATATAAATGGCA+AGG | 0.532518 | 4.4:+5939715 | MS.gene030373:CDS |
| TCAGAGTGACATGTCGCGAC+TGG | 0.533480 | 4.4:+5941593 | MS.gene030373:intron |
| TTTCCAGGATGGAGGTCCCA+TGG | 0.533743 | 4.4:+5942134 | MS.gene030373:intron |
| CTTCCATGCAAAGGATGGGT+CGG | 0.533758 | 4.4:+5947401 | MS.gene030373:CDS |
| GGTTGGACAGGGTGACTTGG+AGG | 0.534548 | 4.4:+5940524 | MS.gene030373:CDS |
| AAAGTTGATGCTCAGCTTGG+TGG | 0.534567 | 4.4:+5945763 | MS.gene030373:CDS |
| TGGTGTCAGCCTTCTCAAGA+TGG | 0.537630 | 4.4:+5948041 | MS.gene030373:CDS |
| TATCGTCTTCTCCTCTCCTA+AGG | 0.538747 | 4.4:-5939518 | None:intergenic |
| TGGTGAGTTCTTGATCCTCA+AGG | 0.541352 | 4.4:-5946560 | None:intergenic |
| CAGATGGACAACTTCTACAC+AGG | 0.541978 | 4.4:+5942298 | MS.gene030373:intron |
| CTCTGAAAGCAGCTATGAAG+TGG | 0.542197 | 4.4:+5940805 | MS.gene030373:CDS |
| AGCTTATCTTGCATCCCTTG+AGG | 0.542985 | 4.4:+5946545 | MS.gene030373:intron |
| TTTACCAGGGTTCTGAACTA+CGG | 0.545961 | 4.4:-5946646 | None:intergenic |
| TCTGCATCCGAAGCAGCCTC+GGG | 0.546429 | 4.4:-5941297 | None:intergenic |
| AAATGACTTAGATGGGAGGC+TGG | 0.546916 | 4.4:+5945725 | MS.gene030373:intron |
| CCTGTTCCATCTTTGTTAAG+GGG | 0.548268 | 4.4:+5945514 | MS.gene030373:CDS |
| AGATAACAAGGCTTCTTGAA+GGG | 0.548726 | 4.4:-5940654 | None:intergenic |
| AAAGTGTACTCTCTCATTGG+AGG | 0.548892 | 4.4:+5947357 | MS.gene030373:CDS |
| GGTTCCTTAACTGACTGCCC+TGG | 0.549924 | 4.4:-5943251 | None:intergenic |
| CTGACTGCCCTGGAGTTGGC+GGG | 0.551592 | 4.4:-5943241 | None:intergenic |
| AAACTAGAATTCAGAACCAA+TGG | 0.552652 | 4.4:-5945806 | None:intergenic |
| GTATTCTTGAAGAGCAAGGT+TGG | 0.553049 | 4.4:-5946580 | None:intergenic |
| GGTGAGTTCTTGATCCTCAA+GGG | 0.553145 | 4.4:-5946559 | None:intergenic |
| ATCATATTTACCACTAGGAG+GGG | 0.554277 | 4.4:-5940080 | None:intergenic |
| AGCCCGACCCATCCTTTGCA+TGG | 0.555367 | 4.4:-5947404 | None:intergenic |
| AGAGTGTGGCCGCACTGGAT+GGG | 0.555488 | 4.4:-5942157 | None:intergenic |
| CCAAGTCACCCTGTCCAACC+AGG | 0.555742 | 4.4:-5940521 | None:intergenic |
| GCAAAGGCAATAACTCTGCC+TGG | 0.557564 | 4.4:+5945983 | MS.gene030373:CDS |
| GGATTGCGCAAGTCAAATGC+TGG | 0.558226 | 4.4:-5947330 | None:intergenic |
| GGGAGAAGCCAATACAAGCT+TGG | 0.559637 | 4.4:-5941277 | None:intergenic |
| TTTGCTTGATTCAACTGGCA+AGG | 0.560732 | 4.4:+5943298 | MS.gene030373:CDS |
| ACCCATGTTTATTCCTATTG+CGG | 0.563888 | 4.4:+5943271 | MS.gene030373:CDS |
| GACCTTCCTTCAGACTAAGC+TGG | 0.564366 | 4.4:-5941618 | None:intergenic |
| GCTTGTATTGGCTTCTCCCG+AGG | 0.565225 | 4.4:+5941281 | MS.gene030373:CDS |
| TCAAGATCATATTTACCACT+AGG | 0.565494 | 4.4:-5940085 | None:intergenic |
| CTTTCCTCTATTTACCACGA+CGG | 0.566620 | 4.4:+5943329 | MS.gene030373:CDS |
| ACCTGTGAACTTCCATGCAA+AGG | 0.567689 | 4.4:+5947392 | MS.gene030373:CDS |
| TTTCAAACACATTCTCTGAA+AGG | 0.568528 | 4.4:-5948251 | None:intergenic |
| TGTTTACTGATATCTTTGAG+AGG | 0.570587 | 4.4:+5945491 | MS.gene030373:CDS |
| TGTAATGGTCAGGGGCGCCA+TGG | 0.571835 | 4.4:+5941148 | MS.gene030373:intron |
| GCAGGAATTCTCATCTGACA+TGG | 0.573103 | 4.4:+5941761 | MS.gene030373:intron |
| ACCGGAACAGAAGAATAAAA+CGG | 0.575037 | 4.4:-5939146 | None:intergenic |
| TACTACCCGTTCAGGAAGGA+AGG | 0.577098 | 4.4:+5940722 | MS.gene030373:CDS |
| GCAATAACTCTGCCTGGTGA+GGG | 0.577317 | 4.4:+5945989 | MS.gene030373:CDS |
| AGGGTCTTTACAAGTCATCT+GGG | 0.577817 | 4.4:+5940269 | MS.gene030373:intron |
| AGATCATATTTACCACTAGG+AGG | 0.580024 | 4.4:-5940082 | None:intergenic |
| TATCTGTTTGCCTTAGTCGC+CGG | 0.580024 | 4.4:+5940672 | MS.gene030373:CDS |
| CTGGTTCCAGCTTAGTCTGA+AGG | 0.581143 | 4.4:+5941612 | MS.gene030373:CDS |
| GATCATATTTACCACTAGGA+GGG | 0.585510 | 4.4:-5940081 | None:intergenic |
| TTGCTGACTTCTATGACAAG+TGG | 0.589939 | 4.4:+5946685 | MS.gene030373:CDS |
| TGTACTCAATGTGAGGCTGA+AGG | 0.591035 | 4.4:+5940298 | MS.gene030373:CDS |
| TGCATCATTTGCATCTCGCA+TGG | 0.592491 | 4.4:-5942914 | None:intergenic |
| AGACATGATCTTCTCCAGCT+GGG | 0.594464 | 4.4:-5948220 | None:intergenic |
| AGCCGCACTGTAAAGCGTGT+TGG | 0.594519 | 4.4:+5941786 | MS.gene030373:CDS |
| GTTCCGAAAACAATTAACAC+TGG | 0.594661 | 4.4:-5938955 | None:intergenic |
| TCGAAATTACCAGTTTCCAC+AGG | 0.596406 | 4.4:+5941824 | MS.gene030373:CDS |
| GATAACAAGGCTTCTTGAAG+GGG | 0.597176 | 4.4:-5940653 | None:intergenic |
| AAACCTTGTTGGGAAGTCAA+GGG | 0.597650 | 4.4:+5942718 | MS.gene030373:CDS |
| ACTTGACAAAATAAACCCTC+AGG | 0.598001 | 4.4:+5947455 | MS.gene030373:CDS |
| TGAACTTCCATGCAAAGGAT+GGG | 0.601997 | 4.4:+5947397 | MS.gene030373:CDS |
| TCGTGGTAAATAGAGGAAAG+AGG | 0.602307 | 4.4:-5943326 | None:intergenic |
| AACACTTCTTATAATCCAGA+AGG | 0.604802 | 4.4:+5943065 | MS.gene030373:CDS |
| TAGACATTTCCTTGCATCGG+AGG | 0.607729 | 4.4:+5939001 | MS.gene030373:CDS |
| AAGAGATCCCGCCAACTCCA+GGG | 0.608268 | 4.4:+5943234 | MS.gene030373:CDS |
| TACCGCAATAGGAATAAACA+TGG | 0.611086 | 4.4:-5943273 | None:intergenic |
| GGGACACCTTCCTTCCTGAA+CGG | 0.612321 | 4.4:-5940728 | None:intergenic |
| AAAGTATACAGTTCGTATTG+AGG | 0.613721 | 4.4:+5940458 | MS.gene030373:CDS |
| ATAACGCTTCCATCTTGAGA+AGG | 0.617252 | 4.4:-5948050 | None:intergenic |
| TTGTCTAATGGAAACCTGGT+TGG | 0.618415 | 4.4:+5940507 | MS.gene030373:CDS |
| GAAGGCTGACACCATTCTTG+AGG | 0.618537 | 4.4:-5948032 | None:intergenic |
| ACGAAAGTTGATGCTCAGCT+TGG | 0.618899 | 4.4:+5945760 | MS.gene030373:CDS |
| ATTGTTGTCTAATGGAAACC+TGG | 0.624462 | 4.4:+5940503 | MS.gene030373:CDS |
| AATGGAAACCTGGTTGGACA+GGG | 0.624588 | 4.4:+5940513 | MS.gene030373:CDS |
| GAACCCTTGACTTCCCAACA+AGG | 0.625203 | 4.4:-5942721 | None:intergenic |
| GCCTCCGTAGTTCAGAACCC+TGG | 0.626424 | 4.4:+5946642 | MS.gene030373:CDS |
| CAAACATTATGCTGTTTGGG+AGG | 0.627080 | 4.4:+5940629 | MS.gene030373:CDS |
| TGCGCAAGTCAAATGCTGGA+TGG | 0.632908 | 4.4:-5947326 | None:intergenic |
| TGGACAGGTACTCTCAAGCT+GGG | 0.633936 | 4.4:+5943024 | MS.gene030373:intron |
| CATTTACTACCCGTTCAGGA+AGG | 0.637356 | 4.4:+5940718 | MS.gene030373:CDS |
| TCTGAAAGCAGCTATGAAGT+GGG | 0.641076 | 4.4:+5940806 | MS.gene030373:CDS |
| ACTAAGGCAAACAGATAACA+AGG | 0.643292 | 4.4:-5940666 | None:intergenic |
| AGAGGGTCAAGAAAGCGAGT+AGG | 0.648650 | 4.4:+5939264 | MS.gene030373:intron |
| GTTTAAATGACTTAGATGGG+AGG | 0.650532 | 4.4:+5945721 | MS.gene030373:intron |
| CACCAACACGCTTTACAGTG+CGG | 0.651504 | 4.4:-5941788 | None:intergenic |
| ATTGGGAGTTATTGGACACG+AGG | 0.651641 | 4.4:+5941332 | MS.gene030373:CDS |
| ACCAGGGTTCTGAACTACGG+AGG | 0.652025 | 4.4:-5946643 | None:intergenic |
| CAGGAATTCTCATCTGACAT+GGG | 0.652148 | 4.4:+5941762 | MS.gene030373:intron |
| TGTGTTTGATCATTCAAACA+TGG | 0.652923 | 4.4:+5946275 | MS.gene030373:CDS |
| TAGGATCTGGACACCTGCAG+AGG | 0.660936 | 4.4:+5940752 | MS.gene030373:CDS |
| CTAACCTTAATGTAAGAGTG+TGG | 0.664000 | 4.4:-5942171 | None:intergenic |
| GTCCCATGGCCCATCCAGTG+CGG | 0.666133 | 4.4:+5942148 | MS.gene030373:CDS |
| TCTTGTCCATCTAAAACTAG+CGG | 0.668026 | 4.4:-5939680 | None:intergenic |
| CAGATTGCAAAGCCCCGTCG+TGG | 0.672577 | 4.4:-5943343 | None:intergenic |
| TTCCAGCTTAGTCTGAAGGA+AGG | 0.673313 | 4.4:+5941616 | MS.gene030373:CDS |
| AAAGGGCTACCTTCAACGCG+AGG | 0.675346 | 4.4:-5939565 | None:intergenic |
| ACAATCCAATCCCCTCCTAG+TGG | 0.677730 | 4.4:+5940070 | MS.gene030373:CDS |
| GAATTTCTGTACTCAATGTG+AGG | 0.677788 | 4.4:+5940291 | MS.gene030373:CDS |
| CTGGTAATGTTGAGAATGTG+CGG | 0.687935 | 4.4:+5947292 | MS.gene030373:CDS |
| TTCCTCTATTTACCACGACG+GGG | 0.688128 | 4.4:+5943331 | MS.gene030373:CDS |
| TGTCCATCTAAAACTAGCGG+AGG | 0.690165 | 4.4:-5939677 | None:intergenic |
| TGCAGGTGTCCAGATCCTAA+GGG | 0.690368 | 4.4:-5940748 | None:intergenic |
| GAACAGTATGAACAGCATCA+GGG | 0.705784 | 4.4:-5946042 | None:intergenic |
| ACCGCAATAGGAATAAACAT+GGG | 0.742992 | 4.4:-5943272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5938734 | 5948299 | 5938734 | ID=MS.gene030373 |
| chr4.4 | mRNA | 5938734 | 5948299 | 5938734 | ID=MS.gene030373.t1;Parent=MS.gene030373 |
| chr4.4 | exon | 5938734 | 5938811 | 5938734 | ID=MS.gene030373.t1.exon1;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5938734 | 5938811 | 5938734 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5938942 | 5939022 | 5938942 | ID=MS.gene030373.t1.exon2;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5938942 | 5939022 | 5938942 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5939122 | 5939166 | 5939122 | ID=MS.gene030373.t1.exon3;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5939122 | 5939166 | 5939122 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5939266 | 5939400 | 5939266 | ID=MS.gene030373.t1.exon4;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5939266 | 5939400 | 5939266 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5939502 | 5939577 | 5939502 | ID=MS.gene030373.t1.exon5;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5939502 | 5939577 | 5939502 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5939669 | 5939745 | 5939669 | ID=MS.gene030373.t1.exon6;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5939669 | 5939745 | 5939669 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5940037 | 5940150 | 5940037 | ID=MS.gene030373.t1.exon7;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5940037 | 5940150 | 5940037 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5940271 | 5940345 | 5940271 | ID=MS.gene030373.t1.exon8;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5940271 | 5940345 | 5940271 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5940438 | 5940545 | 5940438 | ID=MS.gene030373.t1.exon9;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5940438 | 5940545 | 5940438 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5940624 | 5940836 | 5940624 | ID=MS.gene030373.t1.exon10;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5940624 | 5940836 | 5940624 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5940950 | 5941011 | 5940950 | ID=MS.gene030373.t1.exon11;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5940950 | 5941011 | 5940950 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5941160 | 5941187 | 5941160 | ID=MS.gene030373.t1.exon12;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5941160 | 5941187 | 5941160 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5941267 | 5941353 | 5941267 | ID=MS.gene030373.t1.exon13;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5941267 | 5941353 | 5941267 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5941470 | 5941495 | 5941470 | ID=MS.gene030373.t1.exon14;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5941470 | 5941495 | 5941470 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5941597 | 5941660 | 5941597 | ID=MS.gene030373.t1.exon15;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5941597 | 5941660 | 5941597 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5941765 | 5941845 | 5941765 | ID=MS.gene030373.t1.exon16;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5941765 | 5941845 | 5941765 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942141 | 5942188 | 5942141 | ID=MS.gene030373.t1.exon17;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942141 | 5942188 | 5942141 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942301 | 5942319 | 5942301 | ID=MS.gene030373.t1.exon18;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942301 | 5942319 | 5942301 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942484 | 5942488 | 5942484 | ID=MS.gene030373.t1.exon19;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942484 | 5942488 | 5942484 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942597 | 5942608 | 5942597 | ID=MS.gene030373.t1.exon20;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942597 | 5942608 | 5942597 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942693 | 5942749 | 5942693 | ID=MS.gene030373.t1.exon21;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942693 | 5942749 | 5942693 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5942850 | 5942959 | 5942850 | ID=MS.gene030373.t1.exon22;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5942850 | 5942959 | 5942850 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5943031 | 5943111 | 5943031 | ID=MS.gene030373.t1.exon23;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5943031 | 5943111 | 5943031 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5943232 | 5943415 | 5943232 | ID=MS.gene030373.t1.exon24;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5943232 | 5943415 | 5943232 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5945475 | 5945623 | 5945475 | ID=MS.gene030373.t1.exon25;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5945475 | 5945623 | 5945475 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5945736 | 5945874 | 5945736 | ID=MS.gene030373.t1.exon26;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5945736 | 5945874 | 5945736 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5945974 | 5946120 | 5945974 | ID=MS.gene030373.t1.exon27;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5945974 | 5946120 | 5945974 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5946246 | 5946327 | 5946246 | ID=MS.gene030373.t1.exon28;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5946246 | 5946327 | 5946246 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5946547 | 5946722 | 5946547 | ID=MS.gene030373.t1.exon29;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5946547 | 5946722 | 5946547 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5947249 | 5947476 | 5947249 | ID=MS.gene030373.t1.exon30;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5947249 | 5947476 | 5947249 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5948028 | 5948099 | 5948028 | ID=MS.gene030373.t1.exon31;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5948028 | 5948099 | 5948028 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| chr4.4 | exon | 5948219 | 5948299 | 5948219 | ID=MS.gene030373.t1.exon32;Parent=MS.gene030373.t1 |
| chr4.4 | CDS | 5948219 | 5948299 | 5948219 | ID=cds.MS.gene030373.t1;Parent=MS.gene030373.t1 |
| Gene Sequence |
| Protein sequence |
