Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030454.t1 | KEH21015.1 | 97.2 | 324 | 9 | 0 | 1 | 324 | 57 | 380 | 1.50E-179 | 638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030454.t1 | Q8VY78 | 71.2 | 320 | 92 | 0 | 4 | 323 | 2 | 321 | 2.0e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030454.t1 | A0A072U588 | 97.2 | 324 | 9 | 0 | 1 | 324 | 57 | 380 | 1.1e-179 | 638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071380 | MS.gene030454 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030454.t1 | MTR_8g096740 | 97.222 | 324 | 9 | 0 | 1 | 324 | 57 | 380 | 0.0 | 655 |
| MS.gene030454.t1 | MTR_8g096740 | 97.213 | 287 | 8 | 0 | 1 | 287 | 1 | 287 | 0.0 | 581 |
| MS.gene030454.t1 | MTR_5g072480 | 35.032 | 157 | 96 | 3 | 15 | 171 | 176 | 326 | 8.20e-14 | 72.8 |
| MS.gene030454.t1 | MTR_5g072480 | 35.032 | 157 | 96 | 3 | 15 | 171 | 177 | 327 | 8.58e-14 | 72.8 |
| MS.gene030454.t1 | MTR_4g048220 | 31.788 | 151 | 93 | 4 | 10 | 155 | 2 | 147 | 1.69e-13 | 71.2 |
| MS.gene030454.t1 | MTR_4g048220 | 31.788 | 151 | 93 | 4 | 10 | 155 | 2 | 147 | 1.85e-13 | 70.5 |
| MS.gene030454.t1 | MTR_4g048220 | 31.788 | 151 | 93 | 4 | 10 | 155 | 2 | 147 | 2.34e-13 | 70.9 |
| MS.gene030454.t1 | MTR_4g048220 | 31.788 | 151 | 93 | 4 | 10 | 155 | 2 | 147 | 2.51e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030454.t1 | AT4G24940 | 71.250 | 320 | 92 | 0 | 4 | 323 | 2 | 321 | 2.85e-177 | 493 |
| MS.gene030454.t1 | AT5G50680 | 71.203 | 316 | 91 | 0 | 4 | 319 | 2 | 317 | 7.18e-173 | 482 |
| MS.gene030454.t1 | AT5G50580 | 71.203 | 316 | 91 | 0 | 4 | 319 | 2 | 317 | 7.18e-173 | 482 |
| MS.gene030454.t1 | AT5G50680 | 70.570 | 316 | 91 | 1 | 4 | 319 | 2 | 315 | 1.90e-169 | 473 |
| MS.gene030454.t1 | AT5G50580 | 70.570 | 316 | 91 | 1 | 4 | 319 | 2 | 315 | 1.90e-169 | 473 |
| MS.gene030454.t1 | AT2G30110 | 36.306 | 157 | 94 | 2 | 15 | 171 | 77 | 227 | 6.10e-16 | 79.3 |
| MS.gene030454.t1 | AT5G06460 | 34.395 | 157 | 97 | 3 | 15 | 171 | 74 | 224 | 2.56e-14 | 74.3 |
| MS.gene030454.t1 | AT2G32410 | 29.861 | 144 | 95 | 3 | 10 | 150 | 2 | 142 | 2.85e-12 | 67.4 |
| MS.gene030454.t1 | AT2G32410 | 29.861 | 144 | 95 | 3 | 10 | 150 | 2 | 142 | 3.11e-12 | 67.8 |
| MS.gene030454.t1 | AT2G32410 | 29.861 | 144 | 95 | 3 | 10 | 150 | 2 | 142 | 3.85e-12 | 67.0 |
| MS.gene030454.t1 | AT1G05180 | 23.810 | 231 | 143 | 7 | 16 | 226 | 24 | 241 | 7.53e-11 | 63.5 |
Find 65 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAGTTTCTGCTGTTAT+TGG | 0.120073 | 4.4:+6786182 | MS.gene030454:CDS |
| AAAGCTCATGTCTTAGTTTA+TGG | 0.134275 | 4.4:+6780984 | MS.gene030454:CDS |
| CTCCAGTTTCTGCTGTTATT+GGG | 0.194555 | 4.4:+6786183 | MS.gene030454:CDS |
| GAGGTTATCAAAGCAATTTC+TGG | 0.209705 | 4.4:+6786302 | MS.gene030454:CDS |
| TGACCGTCAGATTAGGGTTT+GGG | 0.273281 | 4.4:+6780755 | MS.gene030454:CDS |
| CTACACGTTTGGAAGCTTTC+CGG | 0.296580 | 4.4:-6782042 | None:intergenic |
| TCATGTGCCTGATACTCTTC+TGG | 0.307495 | 4.4:+6786130 | MS.gene030454:CDS |
| CTTTGTATGACCGTCAGATT+AGG | 0.312758 | 4.4:+6780748 | MS.gene030454:CDS |
| GACATATCTGATTCAAATAC+TGG | 0.335424 | 4.4:+6786389 | MS.gene030454:CDS |
| GTTCGTGTCTTTGTGGATAA+AGG | 0.360856 | 4.4:+6781692 | MS.gene030454:CDS |
| CCTGATGAGAATGTGTATAA+TGG | 0.366364 | 4.4:+6781617 | MS.gene030454:CDS |
| TCCTATGGTTCGTGTCTTTG+TGG | 0.380042 | 4.4:+6781685 | MS.gene030454:CDS |
| AATCTTTCCAGAAGAGTATC+AGG | 0.384196 | 4.4:-6786137 | None:intergenic |
| GACCGGTCTATCGTCAATTA+AGG | 0.388703 | 4.4:-6781558 | None:intergenic |
| AGTATAAAATGCTACACGTT+TGG | 0.407403 | 4.4:-6782053 | None:intergenic |
| TCAAAGCAATTTCTGGGAAA+GGG | 0.415897 | 4.4:+6786309 | MS.gene030454:CDS |
| CCATTATACACATTCTCATC+AGG | 0.427583 | 4.4:-6781617 | None:intergenic |
| TGCAAGAATATTGTTCTGGC+TGG | 0.429331 | 4.4:+6781521 | MS.gene030454:CDS |
| ATGACCGTCAGATTAGGGTT+TGG | 0.429457 | 4.4:+6780754 | MS.gene030454:CDS |
| AGCTTTGATGTAGAATTCTT+CGG | 0.436477 | 4.4:+6781863 | MS.gene030454:CDS |
| CTCTTTCAGCTTAAGAACAT+TGG | 0.437329 | 4.4:-6785997 | None:intergenic |
| CGGCGACGGCGAAGAGTTAA+CGG | 0.442404 | 4.4:+6780713 | MS.gene030454:CDS |
| TCCAGTTTCTGCTGTTATTG+GGG | 0.444754 | 4.4:+6786184 | MS.gene030454:CDS |
| CAATGTTCTTAAGCTGAAAG+AGG | 0.448917 | 4.4:+6785998 | MS.gene030454:CDS |
| TTTGTATGACCGTCAGATTA+GGG | 0.453191 | 4.4:+6780749 | MS.gene030454:CDS |
| ACTTAAAGACTTCAATCCTA+TGG | 0.454595 | 4.4:+6781670 | MS.gene030454:CDS |
| AGGTTATCAAAGCAATTTCT+GGG | 0.456843 | 4.4:+6786303 | MS.gene030454:CDS |
| AACCTACATACCTCAAAACT+TGG | 0.457034 | 4.4:-6784597 | None:intergenic |
| TGATACTCTTCTGGAAAGAT+TGG | 0.460712 | 4.4:+6786139 | MS.gene030454:CDS |
| GTCTTAGTTTATGGAATGAA+AGG | 0.496608 | 4.4:+6780993 | MS.gene030454:CDS |
| ATCAAAGCAATTTCTGGGAA+AGG | 0.498227 | 4.4:+6786308 | MS.gene030454:CDS |
| GAGGCTGAAGGACGTAGTGC+GGG | 0.514026 | 4.4:+6785951 | MS.gene030454:CDS |
| TACCTTGGAGGGCTCTTCAC+AGG | 0.517069 | 4.4:+6785341 | MS.gene030454:CDS |
| AATATTGTTCTGGCTGGAGT+TGG | 0.520269 | 4.4:+6781527 | MS.gene030454:CDS |
| CAAAGCAATTTCTGGGAAAG+GGG | 0.521786 | 4.4:+6786310 | MS.gene030454:CDS |
| GCAGGACTATAAATATCAAA+AGG | 0.525364 | 4.4:+6782117 | MS.gene030454:CDS |
| ATGCTCTATCAGTACCTTGG+AGG | 0.531201 | 4.4:+6785329 | MS.gene030454:CDS |
| CCAGTTTCTGCTGTTATTGG+GGG | 0.535744 | 4.4:+6786185 | MS.gene030454:CDS |
| TTTGATGCTTCTGATGGGAA+GGG | 0.536125 | 4.4:+6786356 | MS.gene030454:CDS |
| AAGCTGTACTTTGCAATGAG+AGG | 0.549242 | 4.4:+6785373 | MS.gene030454:CDS |
| CGGCGAAGAGTTAACGGCGC+AGG | 0.555211 | 4.4:+6780719 | MS.gene030454:CDS |
| AGAGGAGCTTTGTACTGCAC+AGG | 0.559597 | 4.4:+6786016 | MS.gene030454:CDS |
| GACCTTAATTGACGATAGAC+CGG | 0.560595 | 4.4:+6781556 | MS.gene030454:CDS |
| TGCTCTATCAGTACCTTGGA+GGG | 0.563387 | 4.4:+6785330 | MS.gene030454:CDS |
| ACCAATAAAATACCTGTCCA+AGG | 0.563530 | 4.4:-6786211 | None:intergenic |
| GAAAGCAATTCCTCAGTGAC+CGG | 0.564416 | 4.4:-6781575 | None:intergenic |
| GAAGGACCTTCTTTGAGCAT+CGG | 0.566700 | 4.4:-6780781 | None:intergenic |
| GACCGTCAGATTAGGGTTTG+GGG | 0.571834 | 4.4:+6780756 | MS.gene030454:CDS |
| GGGGTGCCGATGCTCAAAGA+AGG | 0.577600 | 4.4:+6780775 | MS.gene030454:CDS |
| AGTAATAGAGAAGTTTGAAG+AGG | 0.585773 | 4.4:+6785932 | MS.gene030454:intron |
| AGGATGCTCTATCAGTACCT+TGG | 0.589322 | 4.4:+6785326 | MS.gene030454:intron |
| GAGAAGTTTGAAGAGGCTGA+AGG | 0.603485 | 4.4:+6785939 | MS.gene030454:CDS |
| CACCCCAAACCCTAATCTGA+CGG | 0.611151 | 4.4:-6780758 | None:intergenic |
| AGAGGCTGAAGGACGTAGTG+CGG | 0.615684 | 4.4:+6785950 | MS.gene030454:CDS |
| CTCCTGTGAAGAGCCCTCCA+AGG | 0.616479 | 4.4:-6785343 | None:intergenic |
| ATCACAGCAAAGCTGAGCAA+TGG | 0.628016 | 4.4:-6781645 | None:intergenic |
| TCCACAAAGACACGAACCAT+AGG | 0.628657 | 4.4:-6781686 | None:intergenic |
| TTATACACATTCTCATCAGG+AGG | 0.644434 | 4.4:-6781614 | None:intergenic |
| CGGTTGGAAATGAACGGCGA+CGG | 0.646571 | 4.4:+6780699 | None:intergenic |
| AATGAAAGGAACTATTGCTG+AGG | 0.679461 | 4.4:+6781007 | MS.gene030454:CDS |
| GTTGACTGTAGAGATTCTTG+CGG | 0.683545 | 4.4:+6782076 | MS.gene030454:CDS |
| CCAATAACAGCAGAAACTGG+AGG | 0.697573 | 4.4:-6786182 | None:intergenic |
| AGGTTGCGGTTGGAAATGAA+CGG | 0.718698 | 4.4:+6780693 | None:intergenic |
| TGACGATAGACCGGTCACTG+AGG | 0.739868 | 4.4:+6781565 | MS.gene030454:CDS |
| AATCTGACGGTCATACAAAG+CGG | 0.741130 | 4.4:-6780745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAGTTAAATTGTT+TGG | + | chr4.4:6781166-6781185 | MS.gene030454:intron | 10.0% |
| !! | TAAATAAATTAGCAAAAATT+AGG | - | chr4.4:6780862-6780881 | None:intergenic | 10.0% |
| !!! | AAAATAGAAAAAGTTTTTTA+TGG | - | chr4.4:6786339-6786358 | None:intergenic | 10.0% |
| !!! | AAATAGAAAAAGTTTTTTAT+GGG | - | chr4.4:6786338-6786357 | None:intergenic | 10.0% |
| !! | AAAATCCATTAATTAAACTT+AGG | + | chr4.4:6784672-6784691 | MS.gene030454:intron | 15.0% |
| !! | AAATCCATTAATTAAACTTA+GGG | + | chr4.4:6784673-6784692 | MS.gene030454:intron | 15.0% |
| !! | TAGTAATTTAGAAAATAGAA+AGG | - | chr4.4:6780806-6780825 | None:intergenic | 15.0% |
| !! | TCTTATAAAAAAAAATGGTT+TGG | - | chr4.4:6783093-6783112 | None:intergenic | 15.0% |
| !! | TGAACAATTAAAATTACAAT+TGG | - | chr4.4:6782721-6782740 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTAATGATTTATT+AGG | + | chr4.4:6781472-6781491 | MS.gene030454:intron | 15.0% |
| !! | AAAAAGAAAACAACTTGATA+AGG | - | chr4.4:6781735-6781754 | None:intergenic | 20.0% |
| !! | AAAAGAAAACAACTTGATAA+GGG | - | chr4.4:6781734-6781753 | None:intergenic | 20.0% |
| !! | AAAAGAGAAAAATCAGAAAA+TGG | - | chr4.4:6783219-6783238 | None:intergenic | 20.0% |
| !! | AAAGAAGATAATCAATGTAA+AGG | - | chr4.4:6782363-6782382 | None:intergenic | 20.0% |
| !! | AAGAAGATAATCAATGTAAA+GGG | - | chr4.4:6782362-6782381 | None:intergenic | 20.0% |
| !! | AATTTAGAAAATAGAAAGGA+AGG | - | chr4.4:6780802-6780821 | None:intergenic | 20.0% |
| !! | AGATAAATGTGATATCAATT+CGG | - | chr4.4:6782748-6782767 | None:intergenic | 20.0% |
| !! | AGTATTCTTAATGATGTTTA+TGG | + | chr4.4:6782633-6782652 | MS.gene030454:intron | 20.0% |
| !! | ATTTACTATTGTAACATTAC+AGG | + | chr4.4:6786280-6786299 | MS.gene030454:intron | 20.0% |
| !! | GCAGTTCTTATAAAAAAAAA+TGG | - | chr4.4:6783098-6783117 | None:intergenic | 20.0% |
| !! | TAATGTTACAATAGTAAATC+TGG | - | chr4.4:6786279-6786298 | None:intergenic | 20.0% |
| !! | TTCCACATAAAAAATATCAT+TGG | - | chr4.4:6784741-6784760 | None:intergenic | 20.0% |
| !!! | AAAAGCTATTTCTATAACTA+AGG | + | chr4.4:6781142-6781161 | MS.gene030454:intron | 20.0% |
| !!! | AAGACTTCAAGTTTTTTTTT+CGG | + | chr4.4:6781777-6781796 | MS.gene030454:intron | 20.0% |
| !!! | CAATTTTTATAGACATAGTT+CGG | + | chr4.4:6784245-6784264 | MS.gene030454:intron | 20.0% |
| !!! | TAAGTAACTTTTGTTAGTTT+AGG | + | chr4.4:6780830-6780849 | MS.gene030454:intron | 20.0% |
| !!! | TTCCAATGATATTTTTTATG+TGG | + | chr4.4:6784736-6784755 | MS.gene030454:intron | 20.0% |
| !!! | TTTACACTTGTTTTTTTTTG+TGG | + | chr4.4:6781753-6781772 | MS.gene030454:intron | 20.0% |
| ! | AAAATTGTATAGAGACAGAT+CGG | - | chr4.4:6783063-6783082 | None:intergenic | 25.0% |
| ! | AAAGAAAACAACTTGATAAG+GGG | - | chr4.4:6781733-6781752 | None:intergenic | 25.0% |
| ! | AAATAGAAGATCTGCAATTA+GGG | + | chr4.4:6785057-6785076 | MS.gene030454:intron | 25.0% |
| ! | AAGAAAAAGAATCAGAGATA+TGG | - | chr4.4:6783142-6783161 | None:intergenic | 25.0% |
| ! | AAGAACCTGTAAGATAATTT+CGG | - | chr4.4:6781383-6781402 | None:intergenic | 25.0% |
| ! | AAGACCCTAAGTTTAATTAA+TGG | - | chr4.4:6784680-6784699 | None:intergenic | 25.0% |
| ! | AATAGAGAGAATGAAAGAAA+AGG | + | chr4.4:6784089-6784108 | MS.gene030454:intron | 25.0% |
| ! | ACATAATTGCTTATGATAAG+TGG | - | chr4.4:6781212-6781231 | None:intergenic | 25.0% |
| ! | AGAAAAAGAATCAGAGATAT+GGG | - | chr4.4:6783141-6783160 | None:intergenic | 25.0% |
| ! | ATAGAGAGAATGAAAGAAAA+GGG | + | chr4.4:6784090-6784109 | MS.gene030454:intron | 25.0% |
| ! | ATCATGAAAATAAATGCATG+GGG | - | chr4.4:6782402-6782421 | None:intergenic | 25.0% |
| ! | ATTGATATCACATTTATCTC+AGG | + | chr4.4:6782749-6782768 | MS.gene030454:intron | 25.0% |
| ! | ATTTATGACACTGATGAATA+TGG | + | chr4.4:6782452-6782471 | MS.gene030454:intron | 25.0% |
| ! | CAAAAAAAGAATCAGATATG+TGG | + | chr4.4:6784173-6784192 | MS.gene030454:intron | 25.0% |
| ! | CATCATGAAAATAAATGCAT+GGG | - | chr4.4:6782403-6782422 | None:intergenic | 25.0% |
| ! | CTAAAATGTTCATCACAATT+AGG | + | chr4.4:6782784-6782803 | MS.gene030454:intron | 25.0% |
| ! | CTAATGATTTATTAGGACTT+CGG | + | chr4.4:6781479-6781498 | MS.gene030454:intron | 25.0% |
| ! | GATCTTCTATGTATATGTTT+GGG | + | chr4.4:6785104-6785123 | MS.gene030454:intron | 25.0% |
| ! | GCAGTTCTTCATAAAATAAA+CGG | + | chr4.4:6784216-6784235 | MS.gene030454:intron | 25.0% |
| ! | GTACTTCTAAACTATTGTTA+TGG | - | chr4.4:6782849-6782868 | None:intergenic | 25.0% |
| ! | TAAAATGCAACAATAATGAC+AGG | - | chr4.4:6784625-6784644 | None:intergenic | 25.0% |
| ! | TCATATGATAACCAATAGTT+AGG | + | chr4.4:6782261-6782280 | MS.gene030454:intron | 25.0% |
| ! | TCATCATGAAAATAAATGCA+TGG | - | chr4.4:6782404-6782423 | None:intergenic | 25.0% |
| ! | TCTTCATAAAATAAACGGTT+TGG | + | chr4.4:6784221-6784240 | MS.gene030454:intron | 25.0% |
| ! | TGATCTTCTATGTATATGTT+TGG | + | chr4.4:6785103-6785122 | MS.gene030454:intron | 25.0% |
| ! | TGGATAAAATGTGTGAAATA+AGG | + | chr4.4:6785421-6785440 | MS.gene030454:intron | 25.0% |
| ! | TTAAACTGTTTATCCAAACA+TGG | - | chr4.4:6781077-6781096 | None:intergenic | 25.0% |
| ! | TTCTAAACTATTGTTATGGT+CGG | - | chr4.4:6782845-6782864 | None:intergenic | 25.0% |
| ! | TTGTGAAAAACAAGTTATCT+TGG | + | chr4.4:6781293-6781312 | MS.gene030454:intron | 25.0% |
| ! | TTTAATGTTCAATTCTTCCT+TGG | + | chr4.4:6784532-6784551 | MS.gene030454:intron | 25.0% |
| !! | GGATTTTTAACAAAAGAGAA+AGG | - | chr4.4:6784659-6784678 | None:intergenic | 25.0% |
| !! | TAGATTGGCAATTTGAAATT+AGG | + | chr4.4:6784010-6784029 | MS.gene030454:intron | 25.0% |
| !! | TTAAATAAGGCATTCCAAAA+AGG | + | chr4.4:6781419-6781438 | MS.gene030454:intron | 25.0% |
| !!! | AACTGCTATACCATTTTTTT+TGG | + | chr4.4:6783112-6783131 | MS.gene030454:intron | 25.0% |
| !!! | ACAGTTTAATTTGAAGCTTA+TGG | + | chr4.4:6781088-6781107 | MS.gene030454:intron | 25.0% |
| !!! | AGACTTCAAGTTTTTTTTTC+GGG | + | chr4.4:6781778-6781797 | MS.gene030454:intron | 25.0% |
| !!! | AGCAATTTGTTACAAAGATA+TGG | - | chr4.4:6784442-6784461 | None:intergenic | 25.0% |
| !!! | GCAATTTGTTACAAAGATAT+GGG | - | chr4.4:6784441-6784460 | None:intergenic | 25.0% |
| !!! | TAGTTGATTTGGTTTCATTT+TGG | + | chr4.4:6785617-6785636 | MS.gene030454:intron | 25.0% |
| !!! | TGCATTTATTTTCATGATGA+TGG | + | chr4.4:6782404-6782423 | MS.gene030454:intron | 25.0% |
| !!! | TTTTGGATTTACTGTTGATT+TGG | + | chr4.4:6785634-6785653 | MS.gene030454:intron | 25.0% |
| AAAAATAGACTCTTAAGTCG+TGG | - | chr4.4:6783709-6783728 | None:intergenic | 30.0% | |
| AAAGCTCATGTCTTAGTTTA+TGG | + | chr4.4:6780984-6781003 | MS.gene030454:CDS | 30.0% | |
| AACCAATAGTTAGGCATATA+CGG | + | chr4.4:6782270-6782289 | MS.gene030454:intron | 30.0% | |
| AAGTCATATAGACAAGTGAT+AGG | - | chr4.4:6781037-6781056 | None:intergenic | 30.0% | |
| AATTGCAATCGATAAACTTC+AGG | - | chr4.4:6785859-6785878 | None:intergenic | 30.0% | |
| ACTTAAAGACTTCAATCCTA+TGG | + | chr4.4:6781670-6781689 | MS.gene030454:CDS | 30.0% | |
| AGAGAAAAATCAGAAAATGG+TGG | - | chr4.4:6783216-6783235 | None:intergenic | 30.0% | |
| AGAGAATCTAATGTACAACA+TGG | - | chr4.4:6784972-6784991 | None:intergenic | 30.0% | |
| AGGTTATCAAAGCAATTTCT+GGG | + | chr4.4:6786303-6786322 | MS.gene030454:CDS | 30.0% | |
| AGTAATAGAGAAGTTTGAAG+AGG | + | chr4.4:6785932-6785951 | MS.gene030454:intron | 30.0% | |
| AGTATAAAATGCTACACGTT+TGG | - | chr4.4:6782056-6782075 | None:intergenic | 30.0% | |
| ATATGGGGAACCAAAAAAAA+TGG | - | chr4.4:6783125-6783144 | None:intergenic | 30.0% | |
| ATCCTGTAGCAAAAAGAAAA+AGG | - | chr4.4:6785311-6785330 | None:intergenic | 30.0% | |
| ATCTAATGCAAGTAAATGAC+TGG | - | chr4.4:6784833-6784852 | None:intergenic | 30.0% | |
| ATGAATTTAACATAACCCCA+TGG | - | chr4.4:6784858-6784877 | None:intergenic | 30.0% | |
| CAAATAGAAGATCTGCAATT+AGG | + | chr4.4:6785056-6785075 | MS.gene030454:intron | 30.0% | |
| CAGCTAACATTATAACAGTT+TGG | + | chr4.4:6784288-6784307 | MS.gene030454:intron | 30.0% | |
| CGAAGTCCTAATAAATCATT+AGG | - | chr4.4:6781481-6781500 | None:intergenic | 30.0% | |
| CTACAAATGATTGTATTACG+AGG | + | chr4.4:6783266-6783285 | MS.gene030454:intron | 30.0% | |
| CTTAATGATGTTTATGGTAG+TGG | + | chr4.4:6782639-6782658 | MS.gene030454:intron | 30.0% | |
| GAAAAAGAATCAGAGATATG+GGG | - | chr4.4:6783140-6783159 | None:intergenic | 30.0% | |
| GAACATATTGAGAGTCTTTA+GGG | - | chr4.4:6784719-6784738 | None:intergenic | 30.0% | |
| GAATGAAAGAAAAGGGAAAA+TGG | + | chr4.4:6784097-6784116 | MS.gene030454:intron | 30.0% | |
| GACATATCTGATTCAAATAC+TGG | + | chr4.4:6786389-6786408 | MS.gene030454:CDS | 30.0% | |
| GCAGGACTATAAATATCAAA+AGG | + | chr4.4:6782117-6782136 | MS.gene030454:CDS | 30.0% | |
| GTCTTAGTTTATGGAATGAA+AGG | + | chr4.4:6780993-6781012 | MS.gene030454:CDS | 30.0% | |
| TACTATTGTAACATTACAGG+AGG | + | chr4.4:6786283-6786302 | MS.gene030454:intron | 30.0% | |
| TATGTATGTCGAATTTGAAC+CGG | + | chr4.4:6782214-6782233 | MS.gene030454:intron | 30.0% | |
| TATTCAAGTCAATTAAGAGC+TGG | + | chr4.4:6785450-6785469 | MS.gene030454:intron | 30.0% | |
| TCAAATTCGACATACATACT+CGG | - | chr4.4:6782212-6782231 | None:intergenic | 30.0% | |
| TCAGTTGACAAGCTTAAATA+AGG | + | chr4.4:6781406-6781425 | MS.gene030454:intron | 30.0% | |
| TCTAATGCAAGTAAATGACT+GGG | - | chr4.4:6784832-6784851 | None:intergenic | 30.0% | |
| TGAAGTTAGAACTTGAAGAA+TGG | + | chr4.4:6783900-6783919 | MS.gene030454:intron | 30.0% | |
| TGAATTTAACATAACCCCAT+GGG | - | chr4.4:6784857-6784876 | None:intergenic | 30.0% | |
| TGACTTAGACCAACATAATT+TGG | + | chr4.4:6781051-6781070 | MS.gene030454:intron | 30.0% | |
| TGTAATGTAAACAGAAGGAT+TGG | - | chr4.4:6786095-6786114 | None:intergenic | 30.0% | |
| TGTTATAATGTTAGCTGAAC+CGG | - | chr4.4:6784285-6784304 | None:intergenic | 30.0% | |
| TTAAAAAAAAACGGTGGTGT+TGG | + | chr4.4:6783956-6783975 | MS.gene030454:intron | 30.0% | |
| TTCTTCTTCAAACTATGCTA+CGG | - | chr4.4:6784071-6784090 | None:intergenic | 30.0% | |
| ! | AAAAAGAAAAAGGCATACCT+AGG | - | chr4.4:6785301-6785320 | None:intergenic | 30.0% |
| ! | AGCTTTGATGTAGAATTCTT+CGG | + | chr4.4:6781863-6781882 | MS.gene030454:CDS | 30.0% |
| ! | AGGTATTTTATTGGTCATCA+TGG | + | chr4.4:6786219-6786238 | MS.gene030454:intron | 30.0% |
| ! | CCTAAAATATCCAAGTTTTG+AGG | + | chr4.4:6784587-6784606 | MS.gene030454:CDS | 30.0% |
| ! | CCTCAAAACTTGGATATTTT+AGG | - | chr4.4:6784590-6784609 | None:intergenic | 30.0% |
| ! | GTGCTAATTATCTAGAACTT+TGG | - | chr4.4:6784475-6784494 | None:intergenic | 30.0% |
| ! | GTTTAGAACTTCATATTCCT+AGG | + | chr4.4:6785281-6785300 | MS.gene030454:intron | 30.0% |
| ! | GTTTTGCAAGAATATTGTTC+TGG | + | chr4.4:6781517-6781536 | MS.gene030454:intron | 30.0% |
| ! | TACATAGCATGTGTTTGTTT+TGG | - | chr4.4:6785208-6785227 | None:intergenic | 30.0% |
| ! | TGGCAATTTGAAATTAGGAA+GGG | + | chr4.4:6784015-6784034 | MS.gene030454:intron | 30.0% |
| ! | TGTTGGCTATTTGACAATAA+TGG | + | chr4.4:6784382-6784401 | MS.gene030454:intron | 30.0% |
| ! | TTGGCAATTTGAAATTAGGA+AGG | + | chr4.4:6784014-6784033 | MS.gene030454:intron | 30.0% |
| !! | ACATAGCATGTGTTTGTTTT+GGG | - | chr4.4:6785207-6785226 | None:intergenic | 30.0% |
| !! | ACGAGATTTTGATAGAAGAT+AGG | - | chr4.4:6783736-6783755 | None:intergenic | 30.0% |
| !! | ATAGTTTAGAAGTACTGAAC+TGG | + | chr4.4:6782854-6782873 | MS.gene030454:intron | 30.0% |
| !! | ATGGAAGATGCAATTTTGAT+AGG | + | chr4.4:6783534-6783553 | MS.gene030454:intron | 30.0% |
| !! | CAAAACTTGGATATTTTAGG+TGG | - | chr4.4:6784587-6784606 | None:intergenic | 30.0% |
| !! | CGAGATTTTGATAGAAGATA+GGG | - | chr4.4:6783735-6783754 | None:intergenic | 30.0% |
| !! | TGTAACAAATTGCTTTTGCT+GGG | + | chr4.4:6784448-6784467 | MS.gene030454:intron | 30.0% |
| !! | TTGTAACAAATTGCTTTTGC+TGG | + | chr4.4:6784447-6784466 | MS.gene030454:intron | 30.0% |
| !!! | TAAGCTATGCAACTTTTTTG+TGG | + | chr4.4:6785401-6785420 | MS.gene030454:intron | 30.0% |
| !!! | TCTATTTTGATGCTTCTGAT+GGG | + | chr4.4:6786351-6786370 | MS.gene030454:CDS | 30.0% |
| !!! | TGAATTTTTTGTTGATCTGC+AGG | + | chr4.4:6782099-6782118 | MS.gene030454:CDS | 30.0% |
| !!! | TTCTATTTTGATGCTTCTGA+TGG | + | chr4.4:6786350-6786369 | MS.gene030454:CDS | 30.0% |
| !!! | TTGGTTTTGCTTTAAGACAA+TGG | + | chr4.4:6785019-6785038 | MS.gene030454:intron | 30.0% |
| AAAACAACTTGATAAGGGGA+GGG | - | chr4.4:6781729-6781748 | None:intergenic | 35.0% | |
| AAAAGGCTTAGTGTGTGAAA+TGG | + | chr4.4:6781436-6781455 | MS.gene030454:intron | 35.0% | |
| AAAGGCTTAGTGTGTGAAAT+GGG | + | chr4.4:6781437-6781456 | MS.gene030454:intron | 35.0% | |
| AAATTGCCAATCTACAAGTG+GGG | - | chr4.4:6784004-6784023 | None:intergenic | 35.0% | |
| AACAAGAGATCAATTGTGAC+CGG | - | chr4.4:6782236-6782255 | None:intergenic | 35.0% | |
| AACCTACATACCTCAAAACT+TGG | - | chr4.4:6784600-6784619 | None:intergenic | 35.0% | |
| AACTAGCCAATGAAAAATGC+CGG | + | chr4.4:6782023-6782042 | MS.gene030454:CDS | 35.0% | |
| AAGCGGTGATGTGAAAAATT+GGG | - | chr4.4:6783182-6783201 | None:intergenic | 35.0% | |
| AATAAATGCATGGGGATTGA+CGG | - | chr4.4:6782394-6782413 | None:intergenic | 35.0% | |
| AATCCAGTTCAGTTCAGTTT+GGG | - | chr4.4:6783003-6783022 | None:intergenic | 35.0% | |
| AATGAAAGGAACTATTGCTG+AGG | + | chr4.4:6781007-6781026 | MS.gene030454:CDS | 35.0% | |
| ACAAACACACAAGCTTCTAA+AGG | + | chr4.4:6785155-6785174 | MS.gene030454:intron | 35.0% | |
| ACCAAATATCCTTCATGTCA+AGG | - | chr4.4:6784786-6784805 | None:intergenic | 35.0% | |
| ACCAATAAAATACCTGTCCA+AGG | - | chr4.4:6786214-6786233 | None:intergenic | 35.0% | |
| ACCTTGACATGAAGGATATT+TGG | + | chr4.4:6784782-6784801 | MS.gene030454:intron | 35.0% | |
| AGATATGGGCAAAACAAACA+AGG | - | chr4.4:6784427-6784446 | None:intergenic | 35.0% | |
| AGTAGCAAAAACATGGAAGA+AGG | - | chr4.4:6781949-6781968 | None:intergenic | 35.0% | |
| AGTATAGAAACATGCCCTAA+TGG | + | chr4.4:6785776-6785795 | MS.gene030454:intron | 35.0% | |
| AGTCAGTAAGGGAAAATTTG+AGG | + | chr4.4:6782541-6782560 | MS.gene030454:intron | 35.0% | |
| ATCAAACCACTAATCCAGTT+CGG | - | chr4.4:6782905-6782924 | None:intergenic | 35.0% | |
| ATCAACTAAAGCAATCAGGT+TGG | - | chr4.4:6785605-6785624 | None:intergenic | 35.0% | |
| ATCACAATTAGGACTGTTCA+TGG | + | chr4.4:6782795-6782814 | MS.gene030454:intron | 35.0% | |
| ATCCGTATATGCCTAACTAT+TGG | - | chr4.4:6782275-6782294 | None:intergenic | 35.0% | |
| ATGTGATAACCTTGACATGA+AGG | + | chr4.4:6784774-6784793 | MS.gene030454:intron | 35.0% | |
| CAAACATGGCCAAATTATGT+TGG | - | chr4.4:6781063-6781082 | None:intergenic | 35.0% | |
| CAAATTGCCAATCTACAAGT+GGG | - | chr4.4:6784005-6784024 | None:intergenic | 35.0% | |
| CAACATAATTTGGCCATGTT+TGG | + | chr4.4:6781061-6781080 | MS.gene030454:intron | 35.0% | |
| CAATGTTCTTAAGCTGAAAG+AGG | + | chr4.4:6785998-6786017 | MS.gene030454:CDS | 35.0% | |
| CAGTTAATTTCAGTGCGTTT+CGG | - | chr4.4:6782696-6782715 | None:intergenic | 35.0% | |
| CATAGAAGATCAACACAGAA+TGG | - | chr4.4:6785095-6785114 | None:intergenic | 35.0% | |
| CCAAATCAACTAAAGCAATC+AGG | - | chr4.4:6785609-6785628 | None:intergenic | 35.0% | |
| CCATTATACACATTCTCATC+AGG | - | chr4.4:6781620-6781639 | None:intergenic | 35.0% | |
| CCTGATGAGAATGTGTATAA+TGG | + | chr4.4:6781617-6781636 | MS.gene030454:CDS | 35.0% | |
| CCTGATTGCTTTAGTTGATT+TGG | + | chr4.4:6785606-6785625 | MS.gene030454:intron | 35.0% | |
| CTCTTTCAGCTTAAGAACAT+TGG | - | chr4.4:6786000-6786019 | None:intergenic | 35.0% | |
| GAAACAATACTCTTAAGTCG+TGG | + | chr4.4:6783567-6783586 | MS.gene030454:intron | 35.0% | |
| GAGACTGTAATGTAAACAGA+AGG | - | chr4.4:6786100-6786119 | None:intergenic | 35.0% | |
| GAGGTTATCAAAGCAATTTC+TGG | + | chr4.4:6786302-6786321 | MS.gene030454:CDS | 35.0% | |
| GATGACACTTCATCATTGTT+CGG | - | chr4.4:6783442-6783461 | None:intergenic | 35.0% | |
| GGAACATATTGAGAGTCTTT+AGG | - | chr4.4:6784720-6784739 | None:intergenic | 35.0% | |
| GGTGTCTGGTCTAATATATT+AGG | + | chr4.4:6785487-6785506 | MS.gene030454:intron | 35.0% | |
| GTTCTCCGAAATTATCTTAC+AGG | + | chr4.4:6781375-6781394 | MS.gene030454:intron | 35.0% | |
| GTTTCCTGCTTTATGTGATT+TGG | - | chr4.4:6782568-6782587 | None:intergenic | 35.0% | |
| TAAAGGGAAGTAACACAGTT+TGG | - | chr4.4:6782346-6782365 | None:intergenic | 35.0% | |
| TAAAGTCATCATCGTCTGTA+AGG | + | chr4.4:6782486-6782505 | MS.gene030454:intron | 35.0% | |
| TAATCCAGTTCAGTTCAGTT+TGG | - | chr4.4:6783004-6783023 | None:intergenic | 35.0% | |
| TCAAATTGCCAATCTACAAG+TGG | - | chr4.4:6784006-6784025 | None:intergenic | 35.0% | |
| TCTTCCTTGGCAGAAAAAAA+TGG | + | chr4.4:6784545-6784564 | MS.gene030454:intron | 35.0% | |
| TCTTCTTCAAACTATGCTAC+GGG | - | chr4.4:6784070-6784089 | None:intergenic | 35.0% | |
| TGAAAGAAAAGGGAAAATGG+TGG | + | chr4.4:6784100-6784119 | MS.gene030454:intron | 35.0% | |
| TGCATCTTCCATTCTATCTA+CGG | - | chr4.4:6783526-6783545 | None:intergenic | 35.0% | |
| TGTACATTAGATTCTCTTGC+AGG | + | chr4.4:6784975-6784994 | MS.gene030454:intron | 35.0% | |
| TGTGACAAATTAGATCCACA+GGG | - | chr4.4:6782149-6782168 | None:intergenic | 35.0% | |
| TTATACACATTCTCATCAGG+AGG | - | chr4.4:6781617-6781636 | None:intergenic | 35.0% | |
| TTCTAGATAATTAGCACCTG+TGG | + | chr4.4:6784478-6784497 | MS.gene030454:intron | 35.0% | |
| TTTGTATGACCGTCAGATTA+GGG | + | chr4.4:6780749-6780768 | MS.gene030454:CDS | 35.0% | |
| ! | AAGGAGTTTTCACTGTACTT+TGG | - | chr4.4:6781930-6781949 | None:intergenic | 35.0% |
| ! | ACTCCTAATTTTTCACACCA+CGG | - | chr4.4:6784139-6784158 | None:intergenic | 35.0% |
| ! | ATCAAAGCAATTTCTGGGAA+AGG | + | chr4.4:6786308-6786327 | MS.gene030454:CDS | 35.0% |
| ! | GGCAATTTGAAATTAGGAAG+GGG | + | chr4.4:6784016-6784035 | MS.gene030454:intron | 35.0% |
| ! | TCAAAGCAATTTCTGGGAAA+GGG | + | chr4.4:6786309-6786328 | MS.gene030454:CDS | 35.0% |
| ! | TCATCGACTATGATGATGAA+GGG | + | chr4.4:6783457-6783476 | MS.gene030454:intron | 35.0% |
| ! | TCCTTGGACAGGTATTTTAT+TGG | + | chr4.4:6786210-6786229 | MS.gene030454:intron | 35.0% |
| ! | TGATACTCTTCTGGAAAGAT+TGG | + | chr4.4:6786139-6786158 | MS.gene030454:CDS | 35.0% |
| ! | TGCCTTTTTCTTTTTGCTAC+AGG | + | chr4.4:6785306-6785325 | MS.gene030454:intron | 35.0% |
| ! | TTTCACACACTAAGCCTTTT+TGG | - | chr4.4:6781436-6781455 | None:intergenic | 35.0% |
| !! | AATCTTTCCAGAAGAGTATC+AGG | - | chr4.4:6786140-6786159 | None:intergenic | 35.0% |
| !! | ATAGTTTAGAAGTACTGACC+TGG | + | chr4.4:6782963-6782982 | MS.gene030454:intron | 35.0% |
| !! | ATATTGAGAGTCTTTAGGGT+TGG | - | chr4.4:6784715-6784734 | None:intergenic | 35.0% |
| !! | CTGTTGATTTGGTTTCATCT+CGG | + | chr4.4:6785645-6785664 | MS.gene030454:intron | 35.0% |
| !! | TGATGTTTATGGTAGTGGAT+AGG | + | chr4.4:6782644-6782663 | MS.gene030454:intron | 35.0% |
| !!! | ATCCAAGTTTTGAGGTATGT+AGG | + | chr4.4:6784595-6784614 | MS.gene030454:intron | 35.0% |
| !!! | ATGTGTTTGTTTTGGGCATA+AGG | - | chr4.4:6785200-6785219 | None:intergenic | 35.0% |
| !!! | ATTTTCCCTTACTGACTTCT+AGG | - | chr4.4:6782538-6782557 | None:intergenic | 35.0% |
| !!! | CTTGTGTGTTTGTTTTGCAA+TGG | - | chr4.4:6785148-6785167 | None:intergenic | 35.0% |
| !!! | TTCACGGGTTAGTTTAGTTT+TGG | + | chr4.4:6785568-6785587 | MS.gene030454:intron | 35.0% |
| !!! | TTGGTAGCGCATTTTGTTTT+CGG | - | chr4.4:6782327-6782346 | None:intergenic | 35.0% |
| AAACAACTTGATAAGGGGAG+GGG | - | chr4.4:6781728-6781747 | None:intergenic | 40.0% | |
| AAGCCAGAGTAGCAAAAACA+TGG | - | chr4.4:6781956-6781975 | None:intergenic | 40.0% | |
| AAGCTGTACTTTGCAATGAG+AGG | + | chr4.4:6785373-6785392 | MS.gene030454:CDS | 40.0% | |
| AATCCAGTTCGGTTCAGTTT+GGG | - | chr4.4:6782894-6782913 | None:intergenic | 40.0% | |
| AATCTGACGGTCATACAAAG+CGG | - | chr4.4:6780748-6780767 | None:intergenic | 40.0% | |
| ACAAACTACAATCGACAGCT+AGG | - | chr4.4:6784365-6784384 | None:intergenic | 40.0% | |
| ACCTAGTACATGACAGGAAA+AGG | - | chr4.4:6784940-6784959 | None:intergenic | 40.0% | |
| ACGGCGATTTCCAAATAATC+CGG | - | chr4.4:6783507-6783526 | None:intergenic | 40.0% | |
| ACGGCGGCGTTAAAAAAAAA+CGG | + | chr4.4:6783947-6783966 | MS.gene030454:intron | 40.0% | |
| ACTAAGTTAAGCCAAGAGAG+AGG | + | chr4.4:6785531-6785550 | MS.gene030454:intron | 40.0% | |
| ACTGAACAGAACCATAACAG+TGG | - | chr4.4:6784321-6784340 | None:intergenic | 40.0% | |
| AGAGAAGTTGCCGGATTATT+TGG | + | chr4.4:6783494-6783513 | MS.gene030454:intron | 40.0% | |
| AGAGTGACAGTGTGTACAAA+TGG | + | chr4.4:6783596-6783615 | MS.gene030454:intron | 40.0% | |
| AGGACCAAATCACATAAAGC+AGG | + | chr4.4:6782561-6782580 | MS.gene030454:intron | 40.0% | |
| AGGCTCTATCACTAATTGCA+AGG | - | chr4.4:6782518-6782537 | None:intergenic | 40.0% | |
| ATAGAGCCTAGAAGTCAGTA+AGG | + | chr4.4:6782529-6782548 | MS.gene030454:intron | 40.0% | |
| ATCAACTTCTTCCTCACATC+TGG | + | chr4.4:6783791-6783810 | MS.gene030454:intron | 40.0% | |
| ATCCAGTTCAGTTCAGTTTG+GGG | - | chr4.4:6783002-6783021 | None:intergenic | 40.0% | |
| ATGACGGTGAGTACAAATTG+TGG | - | chr4.4:6783677-6783696 | None:intergenic | 40.0% | |
| ATTGCTGCAGGTTAAAGCAA+CGG | + | chr4.4:6783928-6783947 | MS.gene030454:intron | 40.0% | |
| ATTGTTCAGAACCAATCGCT+TGG | + | chr4.4:6783855-6783874 | MS.gene030454:intron | 40.0% | |
| CGAGGTTTAGAAGAAGACAA+TGG | + | chr4.4:6783284-6783303 | MS.gene030454:intron | 40.0% | |
| CGGAAACAACCACTTGATTA+GGG | - | chr4.4:6783422-6783441 | None:intergenic | 40.0% | |
| CTCCAGTTTCTGCTGTTATT+GGG | + | chr4.4:6786183-6786202 | MS.gene030454:CDS | 40.0% | |
| CTGTGACAAATTAGATCCAC+AGG | - | chr4.4:6782150-6782169 | None:intergenic | 40.0% | |
| CTTCTTCAAACTATGCTACG+GGG | - | chr4.4:6784069-6784088 | None:intergenic | 40.0% | |
| CTTTGTATGACCGTCAGATT+AGG | + | chr4.4:6780748-6780767 | MS.gene030454:CDS | 40.0% | |
| GAAAACAACTTGATAAGGGG+AGG | - | chr4.4:6781730-6781749 | None:intergenic | 40.0% | |
| GAAGCGGTGATGTGAAAAAT+TGG | - | chr4.4:6783183-6783202 | None:intergenic | 40.0% | |
| GACAAGACGAACAAAAGAGA+AGG | - | chr4.4:6781827-6781846 | None:intergenic | 40.0% | |
| GACCTTAATTGACGATAGAC+CGG | + | chr4.4:6781556-6781575 | MS.gene030454:CDS | 40.0% | |
| GGAAACAACCACTTGATTAG+GGG | - | chr4.4:6783421-6783440 | None:intergenic | 40.0% | |
| GTGAAATTGTGAAGGGGTTT+GGG | - | chr4.4:6783318-6783337 | None:intergenic | 40.0% | |
| GTGACAAATTAGATCCACAG+GGG | - | chr4.4:6782148-6782167 | None:intergenic | 40.0% | |
| GTGATGTGAAAAATTGGGAG+TGG | - | chr4.4:6783177-6783196 | None:intergenic | 40.0% | |
| GTGGTGTGAAAAATTAGGAG+TGG | + | chr4.4:6784138-6784157 | MS.gene030454:intron | 40.0% | |
| GTTCGTGTCTTTGTGGATAA+AGG | + | chr4.4:6781692-6781711 | MS.gene030454:CDS | 40.0% | |
| GTTGACTGTAGAGATTCTTG+CGG | + | chr4.4:6782076-6782095 | MS.gene030454:CDS | 40.0% | |
| TAAGCTCTCTCTCTCCATTA+GGG | - | chr4.4:6785793-6785812 | None:intergenic | 40.0% | |
| TAATCCAGTTCGGTTCAGTT+TGG | - | chr4.4:6782895-6782914 | None:intergenic | 40.0% | |
| TACTTGCATTAGATGCCCAT+GGG | + | chr4.4:6784839-6784858 | MS.gene030454:intron | 40.0% | |
| TAGAGCCTAGAAGTCAGTAA+GGG | + | chr4.4:6782530-6782549 | MS.gene030454:intron | 40.0% | |
| TCCAGTTTCTGCTGTTATTG+GGG | + | chr4.4:6786184-6786203 | MS.gene030454:CDS | 40.0% | |
| TCCTTGGCAGAAAAAAATGG+AGG | + | chr4.4:6784548-6784567 | MS.gene030454:intron | 40.0% | |
| TCGGAAACAACCACTTGATT+AGG | - | chr4.4:6783423-6783442 | None:intergenic | 40.0% | |
| TGAACAGCAATTGATACTGC+TGG | - | chr4.4:6783366-6783385 | None:intergenic | 40.0% | |
| TGCAAGAATATTGTTCTGGC+TGG | + | chr4.4:6781521-6781540 | MS.gene030454:CDS | 40.0% | |
| TGTGAAATTGTGAAGGGGTT+TGG | - | chr4.4:6783319-6783338 | None:intergenic | 40.0% | |
| TTACTTGCATTAGATGCCCA+TGG | + | chr4.4:6784838-6784857 | MS.gene030454:intron | 40.0% | |
| TTCGGTTCAAAATTCAGAGC+CGG | + | chr4.4:6784263-6784282 | MS.gene030454:intron | 40.0% | |
| TTTCACAGCACCAATGTCAT+CGG | + | chr4.4:6783332-6783351 | MS.gene030454:intron | 40.0% | |
| TTTGATGCTTCTGATGGGAA+GGG | + | chr4.4:6786356-6786375 | MS.gene030454:CDS | 40.0% | |
| ! | AATATTGTTCTGGCTGGAGT+TGG | + | chr4.4:6781527-6781546 | MS.gene030454:CDS | 40.0% |
| ! | ACTGAACTGAACTGGATTAG+CGG | + | chr4.4:6783005-6783024 | MS.gene030454:intron | 40.0% |
| ! | AGCTGTCGATTGTAGTTTGT+TGG | + | chr4.4:6784365-6784384 | MS.gene030454:intron | 40.0% |
| ! | AGCTTTCCGGCATTTTTCAT+TGG | - | chr4.4:6782032-6782051 | None:intergenic | 40.0% |
| ! | CAAAGCAATTTCTGGGAAAG+GGG | + | chr4.4:6786310-6786329 | MS.gene030454:CDS | 40.0% |
| ! | CTTTTGTTCGTCTTGTCTTC+AGG | + | chr4.4:6781830-6781849 | MS.gene030454:intron | 40.0% |
| ! | GCAGTATCAATTGCTGTTCA+AGG | + | chr4.4:6783366-6783385 | MS.gene030454:intron | 40.0% |
| ! | GTCATCGACTATGATGATGA+AGG | + | chr4.4:6783456-6783475 | MS.gene030454:intron | 40.0% |
| ! | TCCTTTTCCTGTCATGTACT+AGG | + | chr4.4:6784936-6784955 | MS.gene030454:intron | 40.0% |
| ! | TTGGTTCTTCACCACTGTTA+TGG | + | chr4.4:6784307-6784326 | MS.gene030454:intron | 40.0% |
| ! | TTTTGATGCTTCTGATGGGA+AGG | + | chr4.4:6786355-6786374 | MS.gene030454:CDS | 40.0% |
| !! | AACTTTTAGTTGACGGTGTC+TGG | + | chr4.4:6785473-6785492 | MS.gene030454:intron | 40.0% |
| !! | CTTCCATGTTTTTGCTACTC+TGG | + | chr4.4:6781950-6781969 | MS.gene030454:intron | 40.0% |
| !! | GAACTGGATTAGTGGTTTGA+TGG | + | chr4.4:6782904-6782923 | MS.gene030454:intron | 40.0% |
| !! | GAGCTGGAACTTTTAGTTGA+CGG | + | chr4.4:6785466-6785485 | MS.gene030454:intron | 40.0% |
| !! | GTGGGTGGTCATTGATTTAT+TGG | - | chr4.4:6783399-6783418 | None:intergenic | 40.0% |
| !! | TGGTGCTGTGAAATTGTGAA+GGG | - | chr4.4:6783325-6783344 | None:intergenic | 40.0% |
| !! | TTGGTGCTGTGAAATTGTGA+AGG | - | chr4.4:6783326-6783345 | None:intergenic | 40.0% |
| !!! | AGTTGGGCAGTTTTTTTACC+AGG | - | chr4.4:6782670-6782689 | None:intergenic | 40.0% |
| !!! | TCCTCCATTTTTTTCTGCCA+AGG | - | chr4.4:6784552-6784571 | None:intergenic | 40.0% |
| AAAGCAAGCACAGTATCCAC+AGG | - | chr4.4:6784497-6784516 | None:intergenic | 45.0% | |
| AACAACCACTTGATTAGGGG+TGG | - | chr4.4:6783418-6783437 | None:intergenic | 45.0% | |
| AACCTAGAGAACGCAAAGGT+TGG | + | chr4.4:6782585-6782604 | MS.gene030454:intron | 45.0% | |
| AAGTTAAGCCAAGAGAGAGG+TGG | + | chr4.4:6785534-6785553 | MS.gene030454:intron | 45.0% | |
| AATGACTGGGTAAGCCATCA+AGG | - | chr4.4:6784819-6784838 | None:intergenic | 45.0% | |
| ACAAATTAGATCCACAGGGG+TGG | - | chr4.4:6782145-6782164 | None:intergenic | 45.0% | |
| ACAACCACTTGATTAGGGGT+GGG | - | chr4.4:6783417-6783436 | None:intergenic | 45.0% | |
| ACCTAGACCTAGTACATGAC+AGG | - | chr4.4:6784946-6784965 | None:intergenic | 45.0% | |
| ACCTAGAGAACGCAAAGGTT+GGG | + | chr4.4:6782586-6782605 | MS.gene030454:intron | 45.0% | |
| ACTTGCATTAGATGCCCATG+GGG | + | chr4.4:6784840-6784859 | MS.gene030454:intron | 45.0% | |
| AGAATGGTGATCATTGCTGC+AGG | + | chr4.4:6783916-6783935 | MS.gene030454:intron | 45.0% | |
| AGGAAACCTAGAGAACGCAA+AGG | + | chr4.4:6782581-6782600 | MS.gene030454:intron | 45.0% | |
| AGGATGCTCTATCAGTACCT+TGG | + | chr4.4:6785326-6785345 | MS.gene030454:intron | 45.0% | |
| AGTTGTGAGAGAGAAGTTGC+CGG | + | chr4.4:6783485-6783504 | MS.gene030454:intron | 45.0% | |
| ATCACAGCAAAGCTGAGCAA+TGG | - | chr4.4:6781648-6781667 | None:intergenic | 45.0% | |
| ATCCAGTTCGGTTCAGTTTG+GGG | - | chr4.4:6782893-6782912 | None:intergenic | 45.0% | |
| ATGAAGGGATTCCAGATGTG+AGG | - | chr4.4:6783805-6783824 | None:intergenic | 45.0% | |
| ATGACCGTCAGATTAGGGTT+TGG | + | chr4.4:6780754-6780773 | MS.gene030454:CDS | 45.0% | |
| ATGCTCTATCAGTACCTTGG+AGG | + | chr4.4:6785329-6785348 | MS.gene030454:CDS | 45.0% | |
| CAAAGGTTGGGATGGATGAA+AGG | + | chr4.4:6782598-6782617 | MS.gene030454:intron | 45.0% | |
| CCAATAACAGCAGAAACTGG+AGG | - | chr4.4:6786185-6786204 | None:intergenic | 45.0% | |
| CCAGTTTCTGCTGTTATTGG+GGG | + | chr4.4:6786185-6786204 | MS.gene030454:CDS | 45.0% | |
| CCTCCAGTTTCTGCTGTTAT+TGG | + | chr4.4:6786182-6786201 | MS.gene030454:CDS | 45.0% | |
| CTACACGTTTGGAAGCTTTC+CGG | - | chr4.4:6782045-6782064 | None:intergenic | 45.0% | |
| GAAAGCAATTCCTCAGTGAC+CGG | - | chr4.4:6781578-6781597 | None:intergenic | 45.0% | |
| GAAGGACCTTCTTTGAGCAT+CGG | - | chr4.4:6780784-6780803 | None:intergenic | 45.0% | |
| GACCGGTCTATCGTCAATTA+AGG | - | chr4.4:6781561-6781580 | None:intergenic | 45.0% | |
| GAGAAGTTTGAAGAGGCTGA+AGG | + | chr4.4:6785939-6785958 | MS.gene030454:CDS | 45.0% | |
| GAGCCGTGGTGTGAAAAATT+AGG | + | chr4.4:6784133-6784152 | MS.gene030454:intron | 45.0% | |
| GCATGATCTATAAACCGCTG+CGG | - | chr4.4:6783771-6783790 | None:intergenic | 45.0% | |
| GCGGCGTTAAAAAAAAACGG+TGG | + | chr4.4:6783950-6783969 | MS.gene030454:intron | 45.0% | |
| GGAAATCGCCGTAGATAGAA+TGG | + | chr4.4:6783515-6783534 | MS.gene030454:intron | 45.0% | |
| GTAAGCTCTCTCTCTCCATT+AGG | - | chr4.4:6785794-6785813 | None:intergenic | 45.0% | |
| GTCGTGGAATCTGAGAATGA+CGG | - | chr4.4:6783693-6783712 | None:intergenic | 45.0% | |
| GTCTTTCATTCTATCCGCAG+CGG | + | chr4.4:6783754-6783773 | MS.gene030454:intron | 45.0% | |
| TACCCCAAACTGAACTGAAC+TGG | + | chr4.4:6782997-6783016 | MS.gene030454:intron | 45.0% | |
| TCAGAACCAATCGCTTGGTT+AGG | + | chr4.4:6783860-6783879 | MS.gene030454:intron | 45.0% | |
| TCATGTGCCTGATACTCTTC+TGG | + | chr4.4:6786130-6786149 | MS.gene030454:CDS | 45.0% | |
| TCCACAAAGACACGAACCAT+AGG | - | chr4.4:6781689-6781708 | None:intergenic | 45.0% | |
| TCCTATGGTTCGTGTCTTTG+TGG | + | chr4.4:6781685-6781704 | MS.gene030454:CDS | 45.0% | |
| TCCTGTCATGTACTAGGTCT+AGG | + | chr4.4:6784942-6784961 | MS.gene030454:intron | 45.0% | |
| TGACCGTCAGATTAGGGTTT+GGG | + | chr4.4:6780755-6780774 | MS.gene030454:CDS | 45.0% | |
| TGAGTTCCCCACTTGTAGAT+TGG | + | chr4.4:6783995-6784014 | MS.gene030454:intron | 45.0% | |
| TGCTCTATCAGTACCTTGGA+GGG | + | chr4.4:6785330-6785349 | MS.gene030454:CDS | 45.0% | |
| TGGGGTATAACTAACTGTCC+AGG | - | chr4.4:6782875-6782894 | None:intergenic | 45.0% | |
| ! | ACAGGTATGCTTGCTGGAAT+TGG | + | chr4.4:6786034-6786053 | MS.gene030454:intron | 45.0% |
| ! | ACTGAACCGAACTGGATTAG+TGG | + | chr4.4:6782896-6782915 | MS.gene030454:intron | 45.0% |
| ! | ATGGCGGCAATGATGATGAA+GGG | - | chr4.4:6783820-6783839 | None:intergenic | 45.0% |
| ! | GGATTAGTGGTTTGATGGAG+CGG | + | chr4.4:6782909-6782928 | MS.gene030454:intron | 45.0% |
| ! | GGTGCTGTGAAATTGTGAAG+GGG | - | chr4.4:6783324-6783343 | None:intergenic | 45.0% |
| ! | TGGTGCACTGATAACCTTGA+TGG | + | chr4.4:6784802-6784821 | MS.gene030454:intron | 45.0% |
| !! | GAACTGGATTAGCGGTTTGA+TGG | + | chr4.4:6783013-6783032 | MS.gene030454:intron | 45.0% |
| !! | TTTATGGTAGTGGATAGGCC+TGG | + | chr4.4:6782649-6782668 | MS.gene030454:intron | 45.0% |
| !!! | TGGTGGTTTTGAGAGTGAAG+CGG | - | chr4.4:6783199-6783218 | None:intergenic | 45.0% |
| ACCAATCGCTTGGTTAGGTG+TGG | + | chr4.4:6783865-6783884 | MS.gene030454:intron | 50.0% | |
| ACCACACCTAACCAAGCGAT+TGG | - | chr4.4:6783869-6783888 | None:intergenic | 50.0% | |
| AGAGAACGCAAAGGTTGGGA+TGG | + | chr4.4:6782590-6782609 | MS.gene030454:intron | 50.0% | |
| ATCATCATTGCCGCCATCGA+TGG | + | chr4.4:6783823-6783842 | MS.gene030454:intron | 50.0% | |
| CAATGACGAAGAGCCATCGA+TGG | - | chr4.4:6783839-6783858 | None:intergenic | 50.0% | |
| CACCCCAAACCCTAATCTGA+CGG | - | chr4.4:6780761-6780780 | None:intergenic | 50.0% | |
| CAGTGCGTTTCGGTTCAGTT+GGG | - | chr4.4:6782686-6782705 | None:intergenic | 50.0% | |
| CCCCCAATAACAGCAGAAAC+TGG | - | chr4.4:6786188-6786207 | None:intergenic | 50.0% | |
| GACCGTCAGATTAGGGTTTG+GGG | + | chr4.4:6780756-6780775 | MS.gene030454:CDS | 50.0% | |
| GGTTGAAGCTCCGATGACAT+TGG | - | chr4.4:6783345-6783364 | None:intergenic | 50.0% | |
| TACCCCAAACTGAACCGAAC+TGG | + | chr4.4:6782888-6782907 | MS.gene030454:intron | 50.0% | |
| TACTGCACAGGTATGCTTGC+TGG | + | chr4.4:6786028-6786047 | MS.gene030454:intron | 50.0% | |
| TCAGTGCGTTTCGGTTCAGT+TGG | - | chr4.4:6782687-6782706 | None:intergenic | 50.0% | |
| TCCCAACCTTTGCGTTCTCT+AGG | - | chr4.4:6782590-6782609 | None:intergenic | 50.0% | |
| ! | AGAGGAGCTTTGTACTGCAC+AGG | + | chr4.4:6786016-6786035 | MS.gene030454:CDS | 50.0% |
| ! | GATGGCGGCAATGATGATGA+AGG | - | chr4.4:6783821-6783840 | None:intergenic | 50.0% |
| ! | GGATTAGCGGTTTGATGGAG+CGG | + | chr4.4:6783018-6783037 | MS.gene030454:intron | 50.0% |
| ! | GGTGGAGAGCAAGGTATTCA+CGG | + | chr4.4:6785552-6785571 | MS.gene030454:intron | 50.0% |
| ! | GTGGAGAGCAAGGTATTCAC+GGG | + | chr4.4:6785553-6785572 | MS.gene030454:intron | 50.0% |
| !! | ATCAAAAGGTACCACCCCTG+TGG | + | chr4.4:6782131-6782150 | MS.gene030454:intron | 50.0% |
| ACCACCCACCCCTAATCAAG+TGG | + | chr4.4:6783410-6783429 | MS.gene030454:intron | 55.0% | |
| ACCACTTGATTAGGGGTGGG+TGG | - | chr4.4:6783414-6783433 | None:intergenic | 55.0% | |
| AGAGGCTGAAGGACGTAGTG+CGG | + | chr4.4:6785950-6785969 | MS.gene030454:CDS | 55.0% | |
| CAAGAGAGAGGTGGAGAGCA+AGG | + | chr4.4:6785543-6785562 | MS.gene030454:intron | 55.0% | |
| CTTGCTCTCCACCTCTCTCT+TGG | - | chr4.4:6785545-6785564 | None:intergenic | 55.0% | |
| GCTGCAGGTTAAAGCAACGG+CGG | + | chr4.4:6783931-6783950 | MS.gene030454:intron | 55.0% | |
| TACCTTGGAGGGCTCTTCAC+AGG | + | chr4.4:6785341-6785360 | MS.gene030454:CDS | 55.0% | |
| TGACGAAGAGCCATCGATGG+CGG | - | chr4.4:6783836-6783855 | None:intergenic | 55.0% | |
| TGACGATAGACCGGTCACTG+AGG | + | chr4.4:6781565-6781584 | MS.gene030454:CDS | 55.0% | |
| !! | GCTGTTATTGGGGGCATCCT+TGG | + | chr4.4:6786194-6786213 | MS.gene030454:CDS | 55.0% |
| !! | TATTGGGGGCATCCTTGGAC+AGG | + | chr4.4:6786199-6786218 | MS.gene030454:CDS | 55.0% |
| !!! | GTGGTTTTGAGAGTGAGCCG+TGG | + | chr4.4:6784119-6784138 | MS.gene030454:intron | 55.0% |
| CGGCGACGGCGAAGAGTTAA+CGG | + | chr4.4:6780713-6780732 | MS.gene030454:CDS | 60.0% | |
| CTCCTGTGAAGAGCCCTCCA+AGG | - | chr4.4:6785346-6785365 | None:intergenic | 60.0% | |
| GAGGCTGAAGGACGTAGTGC+GGG | + | chr4.4:6785951-6785970 | MS.gene030454:CDS | 60.0% | |
| !! | GGGGTGCCGATGCTCAAAGA+AGG | + | chr4.4:6780775-6780794 | MS.gene030454:CDS | 60.0% |
| CGGCGAAGAGTTAACGGCGC+AGG | + | chr4.4:6780719-6780738 | MS.gene030454:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6780708 | 6786418 | 6780708 | ID=MS.gene030454 |
| chr4.4 | mRNA | 6780708 | 6786418 | 6780708 | ID=MS.gene030454.t1;Parent=MS.gene030454 |
| chr4.4 | exon | 6780708 | 6780796 | 6780708 | ID=MS.gene030454.t1.exon1;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6780708 | 6780796 | 6780708 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6780977 | 6781028 | 6780977 | ID=MS.gene030454.t1.exon2;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6780977 | 6781028 | 6780977 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6781518 | 6781713 | 6781518 | ID=MS.gene030454.t1.exon3;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6781518 | 6781713 | 6781518 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6781852 | 6781931 | 6781852 | ID=MS.gene030454.t1.exon4;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6781852 | 6781931 | 6781852 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6782022 | 6782138 | 6782022 | ID=MS.gene030454.t1.exon5;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6782022 | 6782138 | 6782022 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6784558 | 6784608 | 6784558 | ID=MS.gene030454.t1.exon6;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6784558 | 6784608 | 6784558 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6785328 | 6785394 | 6785328 | ID=MS.gene030454.t1.exon7;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6785328 | 6785394 | 6785328 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6785934 | 6786037 | 6785934 | ID=MS.gene030454.t1.exon8;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6785934 | 6786037 | 6785934 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6786116 | 6786220 | 6786116 | ID=MS.gene030454.t1.exon9;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6786116 | 6786220 | 6786116 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| chr4.4 | exon | 6786302 | 6786418 | 6786302 | ID=MS.gene030454.t1.exon10;Parent=MS.gene030454.t1 |
| chr4.4 | CDS | 6786302 | 6786418 | 6786302 | ID=cds.MS.gene030454.t1;Parent=MS.gene030454.t1 |
| Gene Sequence |
| Protein sequence |
