AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031445

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031445.t1 MTR_2g085280 95.781 237 10 0 1 237 1 237 2.72e-172 473
MS.gene031445.t1 MTR_2g085250 95.781 237 10 0 1 237 1 237 1.25e-171 472
MS.gene031445.t1 MTR_5g055100 82.203 236 42 0 1 236 1 236 1.00e-144 404
MS.gene031445.t1 MTR_5g053390 75.983 229 55 0 1 229 1 229 3.09e-124 352
MS.gene031445.t1 MTR_5g045560 76.695 236 55 0 1 236 1 236 3.53e-124 352
MS.gene031445.t1 MTR_8g043650 66.102 236 80 0 1 236 1 236 1.09e-115 330
MS.gene031445.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 2.69e-113 324
MS.gene031445.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 8.10e-112 320
MS.gene031445.t1 MTR_1g105920 68.037 219 70 0 1 219 1 219 5.75e-111 318
MS.gene031445.t1 MTR_1g105910 65.778 225 77 0 1 225 1 225 2.71e-109 314
MS.gene031445.t1 MTR_1g012570 66.667 219 73 0 1 219 1 219 1.11e-106 308
MS.gene031445.t1 MTR_2g030740 64.840 219 77 0 1 219 1 219 1.46e-106 307
MS.gene031445.t1 MTR_3g052920 64.384 219 78 0 1 219 1 219 1.78e-102 297
MS.gene031445.t1 MTR_3g030770 62.128 235 71 3 1 225 1 227 2.63e-99 288
MS.gene031445.t1 MTR_0121s0080 60.169 236 93 1 1 236 1 235 8.39e-99 288
MS.gene031445.t1 MTR_1g108510 61.702 235 72 3 1 225 1 227 3.62e-97 283
MS.gene031445.t1 MTR_1g105905 61.187 219 85 0 18 236 1 219 1.91e-96 281
MS.gene031445.t1 MTR_2g093190 60.426 235 75 3 1 225 1 227 1.30e-93 274
MS.gene031445.t1 MTR_3g052870 61.187 219 66 2 1 219 1 200 1.83e-91 268
MS.gene031445.t1 MTR_1g108580 61.111 216 76 1 1 216 1 208 1.70e-90 266
MS.gene031445.t1 MTR_7g062350 56.338 213 92 1 24 236 36 247 6.48e-83 248
MS.gene031445.t1 MTR_1g106070 64.286 182 65 0 1 182 1 182 1.12e-82 244
MS.gene031445.t1 MTR_1g075570 65.169 178 48 1 18 195 1 164 6.09e-68 207
MS.gene031445.t1 MTR_3g080940 48.315 178 92 0 1 178 1 178 3.97e-55 176
MS.gene031445.t1 MTR_0121s0100 65.152 132 46 0 1 132 1 132 1.32e-54 172
MS.gene031445.t1 MTR_3g030780 62.903 124 46 0 1 124 1 124 2.59e-51 163
MS.gene031445.t1 MTR_3g067910 74.257 101 26 0 22 122 3 103 4.33e-50 159
MS.gene031445.t1 MTR_8g086290 36.145 166 96 2 5 167 8 166 4.86e-30 110
MS.gene031445.t1 MTR_2g105290 35.057 174 101 3 5 174 8 173 3.84e-29 108
MS.gene031445.t1 MTR_3g067875 89.286 56 6 0 18 73 1 56 5.43e-29 104
MS.gene031445.t1 MTR_7g028448 37.419 155 85 2 5 159 8 150 6.80e-29 107
MS.gene031445.t1 MTR_4g036915 37.419 155 85 2 5 159 8 150 6.80e-29 107
MS.gene031445.t1 MTR_3g067915 55.914 93 41 0 33 125 3 95 1.08e-28 104
MS.gene031445.t1 MTR_3g067870 73.016 63 17 0 16 78 83 145 8.25e-24 93.6
MS.gene031445.t1 MTR_1g108500 53.125 96 24 1 22 117 110 184 1.98e-23 96.7
MS.gene031445.t1 MTR_4g127140 34.054 185 100 5 5 175 8 184 1.18e-22 91.7
MS.gene031445.t1 MTR_1g047550 53.623 69 32 0 9 77 2 70 5.22e-21 87.0
MS.gene031445.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 7.44e-21 86.3
MS.gene031445.t1 MTR_8g079502 53.623 69 32 0 9 77 2 70 8.68e-21 86.7
MS.gene031445.t1 MTR_8g051580 50.633 79 39 0 9 87 2 80 2.50e-20 85.1
MS.gene031445.t1 MTR_1g063160 50.649 77 37 1 9 84 2 78 5.36e-20 84.3
MS.gene031445.t1 MTR_4g131030 48.101 79 41 0 9 87 2 80 7.74e-20 84.7
MS.gene031445.t1 MTR_8g046350 32.298 161 99 3 9 165 2 156 1.42e-18 80.1
MS.gene031445.t1 MTR_0003s0590 27.962 211 113 4 9 186 2 206 1.54e-18 82.0
MS.gene031445.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 3.03e-18 80.9
MS.gene031445.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 4.81e-18 80.1
MS.gene031445.t1 MTR_4g084740 32.967 182 101 4 9 170 2 182 1.15e-17 80.9
MS.gene031445.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.26e-17 79.0
MS.gene031445.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 1.57e-17 77.8
MS.gene031445.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 1.88e-17 79.0
MS.gene031445.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 4.24e-17 78.2
MS.gene031445.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 5.51e-17 75.9
MS.gene031445.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 1.07e-16 77.0
MS.gene031445.t1 MTR_7g075870 52.239 67 32 0 10 76 3 69 1.23e-16 76.3
MS.gene031445.t1 MTR_8g022970 34.395 157 92 3 8 159 17 167 1.23e-16 75.5
MS.gene031445.t1 MTR_4g102530 50.746 67 33 0 10 76 3 69 1.49e-16 75.9
MS.gene031445.t1 MTR_4g109830 50.725 69 33 1 9 76 2 70 2.10e-16 75.9
MS.gene031445.t1 MTR_3g102570 44.330 97 51 3 9 104 2 96 2.98e-16 76.6
MS.gene031445.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 3.25e-16 75.5
MS.gene031445.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 4.82e-16 74.7
MS.gene031445.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 4.95e-16 74.7
MS.gene031445.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 6.81e-16 74.3
MS.gene031445.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 7.29e-16 75.1
MS.gene031445.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 7.34e-16 74.7
MS.gene031445.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 8.35e-16 73.6
MS.gene031445.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 9.85e-16 74.7
MS.gene031445.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.04e-15 73.9
MS.gene031445.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 2.00e-15 73.2
MS.gene031445.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 2.13e-15 73.2
MS.gene031445.t1 MTR_7g075870 51.471 68 32 1 10 76 3 70 2.53e-15 72.8
MS.gene031445.t1 MTR_3g437790 31.690 142 82 4 26 159 30 164 3.67e-15 71.6
MS.gene031445.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 4.31e-15 72.4
MS.gene031445.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 4.65e-15 72.4
MS.gene031445.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 6.05e-15 72.0
MS.gene031445.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 7.12e-15 72.0
MS.gene031445.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 7.50e-15 70.5
MS.gene031445.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 8.25e-15 71.6
MS.gene031445.t1 MTR_1g029670 50.000 66 32 1 9 74 2 66 9.81e-15 70.5
MS.gene031445.t1 MTR_5g046790 46.377 69 36 1 9 76 2 70 1.11e-14 70.9
MS.gene031445.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.44e-14 66.6
MS.gene031445.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 1.61e-14 71.2
MS.gene031445.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 2.59e-14 70.1
MS.gene031445.t1 MTR_7g075850 46.429 84 42 2 9 89 2 85 2.84e-14 70.5
MS.gene031445.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 3.86e-14 65.5
MS.gene031445.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 4.82e-14 66.6
MS.gene031445.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 8.72e-14 68.6
MS.gene031445.t1 MTR_4g109810 27.984 243 136 10 9 230 2 226 1.91e-13 67.8
MS.gene031445.t1 MTR_4g093030 35.789 95 45 1 9 87 2 96 3.84e-13 65.5
MS.gene031445.t1 MTR_3g109930 31.655 139 81 3 27 159 20 150 4.02e-13 65.9
MS.gene031445.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 5.05e-13 66.6
MS.gene031445.t1 MTR_3g084980 46.377 69 36 1 9 76 2 70 5.49e-13 66.6
MS.gene031445.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.37e-11 62.0
MS.gene031445.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.46e-11 61.6
MS.gene031445.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.56e-11 61.6
MS.gene031445.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.64e-11 62.0
MS.gene031445.t1 MTR_4g108720 38.043 92 54 2 9 97 2 93 1.70e-11 63.5
MS.gene031445.t1 MTR_4g051538 28.723 188 113 7 5 182 5 181 2.60e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031445.t1 AT5G60440 47.340 188 92 3 5 189 3 186 2.38e-51 169
MS.gene031445.t1 AT1G65360 39.153 189 108 3 5 192 3 185 1.81e-40 139
MS.gene031445.t1 AT2G24840 47.799 159 74 3 9 162 63 217 2.56e-40 139
MS.gene031445.t1 AT1G01530 40.722 194 99 4 4 192 2 184 4.08e-39 136
MS.gene031445.t1 AT4G36590 43.976 166 79 4 5 160 3 164 6.53e-35 125
MS.gene031445.t1 AT2G34440 35.669 157 98 3 9 164 2 156 4.03e-25 97.8
MS.gene031445.t1 AT3G04100 29.012 162 111 2 2 159 7 168 3.25e-21 88.2
MS.gene031445.t1 AT1G72350 41.732 127 46 3 9 109 43 167 9.95e-21 87.4
MS.gene031445.t1 AT1G28460 31.765 170 112 2 5 170 4 173 1.20e-20 86.3
MS.gene031445.t1 AT3G66656 41.748 103 59 1 9 110 2 104 4.59e-20 84.7
MS.gene031445.t1 AT1G29962 30.233 172 113 3 5 169 4 175 1.71e-19 83.2
MS.gene031445.t1 AT2G45660 54.412 68 31 0 10 77 3 70 6.68e-19 80.9
MS.gene031445.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.81e-18 81.3
MS.gene031445.t1 AT5G51870 54.167 72 33 0 5 76 21 92 1.99e-18 80.5
MS.gene031445.t1 AT2G45650 55.882 68 30 0 9 76 2 69 2.35e-18 81.6
MS.gene031445.t1 AT4G22950 52.239 67 32 0 10 76 3 69 2.44e-18 79.7
MS.gene031445.t1 AT5G51870 55.224 67 30 0 10 76 3 69 5.54e-18 79.7
MS.gene031445.t1 AT4G22950 52.239 67 32 0 10 76 3 69 7.52e-18 79.7
MS.gene031445.t1 AT4G22950 52.239 67 32 0 10 76 3 69 7.52e-18 79.7
MS.gene031445.t1 AT4G24540 37.162 148 76 4 9 156 2 132 7.58e-18 79.7
MS.gene031445.t1 AT5G51870 55.224 67 30 0 10 76 3 69 7.99e-18 78.6
MS.gene031445.t1 AT5G51870 52.703 74 33 1 3 76 8 79 1.03e-17 79.3
MS.gene031445.t1 AT1G77980 46.067 89 47 1 9 96 2 90 1.15e-17 80.9
MS.gene031445.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.16e-17 79.0
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 3 70 1.18e-17 79.3
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.19e-17 79.3
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.24e-17 79.0
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 12 79 1.69e-17 79.0
MS.gene031445.t1 AT1G22130 42.424 99 56 1 9 106 2 100 1.77e-17 80.5
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 28 95 2.14e-17 79.0
MS.gene031445.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.21e-17 79.0
MS.gene031445.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.21e-17 79.0
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.43e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.43e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.43e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.65e-17 75.1
MS.gene031445.t1 AT3G57230 48.529 68 35 0 9 76 2 69 2.90e-17 76.3
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.93e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.93e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.93e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.93e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.93e-17 76.6
MS.gene031445.t1 AT3G57390 52.941 68 32 0 9 76 2 69 4.47e-17 77.8
MS.gene031445.t1 AT4G09960 50.000 68 34 0 9 76 97 164 5.00e-17 79.0
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.48e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.48e-17 76.6
MS.gene031445.t1 AT3G57230 48.529 68 35 0 9 76 2 69 6.57e-17 77.4
MS.gene031445.t1 AT3G57230 48.529 68 35 0 9 76 2 69 6.57e-17 77.4
MS.gene031445.t1 AT4G37940 50.000 68 34 0 9 76 2 69 7.16e-17 77.0
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.18e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.18e-17 76.6
MS.gene031445.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.18e-17 76.6
MS.gene031445.t1 AT4G37940 50.000 68 34 0 9 76 2 69 8.22e-17 77.0
MS.gene031445.t1 AT3G57390 52.941 68 32 0 9 76 2 69 1.03e-16 77.4
MS.gene031445.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.17e-16 77.4
MS.gene031445.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.24e-16 77.4
MS.gene031445.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.38e-16 75.1
MS.gene031445.t1 AT1G77950 41.573 89 51 1 9 96 2 90 1.81e-16 76.6
MS.gene031445.t1 AT1G77950 41.573 89 51 1 9 96 2 90 1.81e-16 76.6
MS.gene031445.t1 AT1G77950 41.573 89 51 1 9 96 2 90 1.81e-16 76.6
MS.gene031445.t1 AT1G77950 41.573 89 51 1 9 96 2 90 1.81e-16 76.6
MS.gene031445.t1 AT1G47760 34.783 115 65 2 9 115 2 114 1.99e-16 75.1
MS.gene031445.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.01e-16 74.7
MS.gene031445.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.28e-16 74.7
MS.gene031445.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.57e-16 75.1
MS.gene031445.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.19e-16 74.7
MS.gene031445.t1 AT5G23260 35.065 154 72 4 5 130 14 167 4.06e-16 75.9
MS.gene031445.t1 AT2G22630 48.529 68 35 0 9 76 2 69 4.18e-16 75.1
MS.gene031445.t1 AT2G22630 48.529 68 35 0 9 76 2 69 4.18e-16 75.1
MS.gene031445.t1 AT4G18960 48.611 72 37 0 9 80 18 89 4.18e-16 75.5
MS.gene031445.t1 AT3G58780 49.296 71 36 0 6 76 14 84 4.20e-16 75.5
MS.gene031445.t1 AT2G42830 50.000 68 34 0 9 76 17 84 4.70e-16 75.1
MS.gene031445.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.70e-16 74.7
MS.gene031445.t1 AT2G42830 50.000 68 34 0 9 76 17 84 4.94e-16 75.1
MS.gene031445.t1 AT3G58780 49.296 71 36 0 6 76 20 90 4.95e-16 75.5
MS.gene031445.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.98e-16 73.9
MS.gene031445.t1 AT3G54340 46.575 73 37 1 9 79 2 74 6.07e-16 74.7
MS.gene031445.t1 AT5G23260 35.333 150 69 4 9 130 2 151 9.47e-16 74.7
MS.gene031445.t1 AT1G69120 37.000 100 55 2 9 100 2 101 9.79e-16 74.3
MS.gene031445.t1 AT3G58780 49.296 71 36 0 6 76 14 84 1.06e-15 74.7
MS.gene031445.t1 AT4G11880 51.471 68 32 1 10 76 3 70 2.07e-15 72.0
MS.gene031445.t1 AT4G11880 51.471 68 32 1 10 76 3 70 2.07e-15 72.0
MS.gene031445.t1 AT1G69120 37.000 100 55 2 9 100 2 101 2.52e-15 73.6
MS.gene031445.t1 AT3G30260 46.377 69 36 1 9 76 2 70 2.67e-15 73.2
MS.gene031445.t1 AT4G11880 51.471 68 32 1 10 76 3 70 2.81e-15 72.8
MS.gene031445.t1 AT4G11880 51.471 68 32 1 10 76 3 70 2.81e-15 72.8
MS.gene031445.t1 AT5G23260 50.667 75 35 1 5 77 14 88 3.33e-15 73.2
MS.gene031445.t1 AT5G20240 46.575 73 37 1 9 79 2 74 4.13e-15 72.0
MS.gene031445.t1 AT5G20240 46.575 73 37 1 9 79 2 74 4.30e-15 70.5
MS.gene031445.t1 AT2G14210 47.826 69 35 1 9 76 2 70 5.14e-15 72.0
MS.gene031445.t1 AT5G60910 47.826 69 35 1 9 76 2 70 5.16e-15 72.4
MS.gene031445.t1 AT1G26310 47.826 69 35 1 9 76 2 70 5.72e-15 72.4
MS.gene031445.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.17e-15 72.0
MS.gene031445.t1 AT2G14210 47.826 69 35 1 9 76 2 70 7.13e-15 72.0
MS.gene031445.t1 AT1G28450 28.834 163 107 4 5 161 4 163 7.20e-15 70.9
MS.gene031445.t1 AT2G22540 50.000 68 29 1 9 76 2 64 8.05e-15 71.6
MS.gene031445.t1 AT5G23260 52.113 71 32 1 9 77 2 72 8.83e-15 71.6
MS.gene031445.t1 AT1G17310 51.899 79 36 1 8 86 47 123 9.76e-15 71.2
MS.gene031445.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.44e-14 69.7
MS.gene031445.t1 AT1G17310 51.899 79 36 1 8 86 58 134 1.53e-14 70.9
MS.gene031445.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.62e-14 71.2
MS.gene031445.t1 AT5G15800 50.725 69 33 1 9 76 2 70 2.73e-14 70.5
MS.gene031445.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.76e-14 69.3
MS.gene031445.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.92e-14 69.3
MS.gene031445.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.19e-14 68.9
MS.gene031445.t1 AT2G03710 50.000 70 33 2 9 76 2 71 6.58e-14 68.2
MS.gene031445.t1 AT5G65060 47.826 69 35 1 9 76 2 70 8.52e-14 67.8
MS.gene031445.t1 AT3G58780 51.667 60 29 0 6 65 14 73 8.70e-14 68.9
MS.gene031445.t1 AT5G65060 47.826 69 35 1 9 76 2 70 8.88e-14 68.2
MS.gene031445.t1 AT5G65060 47.826 69 35 1 9 76 2 70 9.68e-14 67.8
MS.gene031445.t1 AT1G71692 47.143 70 36 1 9 77 2 71 1.17e-13 68.2
MS.gene031445.t1 AT3G58780 51.667 60 29 0 6 65 14 73 1.40e-13 68.9
MS.gene031445.t1 AT2G03710 50.000 70 33 2 9 76 2 71 1.51e-13 68.6
MS.gene031445.t1 AT2G03710 50.000 70 33 2 9 76 2 71 1.51e-13 68.6
MS.gene031445.t1 AT3G02310 46.377 69 36 1 9 76 2 70 2.29e-13 67.0
MS.gene031445.t1 AT5G65070 43.478 69 38 1 9 76 2 70 3.20e-13 66.6
MS.gene031445.t1 AT5G65070 43.478 69 38 1 9 76 2 70 3.37e-13 65.5
MS.gene031445.t1 AT3G02310 46.377 69 36 1 9 76 2 70 4.03e-13 67.4
MS.gene031445.t1 AT1G24260 55.357 56 25 0 9 64 2 57 4.08e-13 67.0
MS.gene031445.t1 AT1G24260 55.357 56 25 0 9 64 2 57 4.28e-13 67.0
MS.gene031445.t1 AT1G24260 55.357 56 25 0 9 64 2 57 4.45e-13 67.0
MS.gene031445.t1 AT5G65070 43.478 69 38 1 9 76 2 70 7.00e-13 66.2
MS.gene031445.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.18e-12 65.5
MS.gene031445.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.69e-12 64.7
MS.gene031445.t1 AT1G18750 40.000 75 43 1 9 81 2 76 3.35e-12 65.5
MS.gene031445.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.26e-12 65.5
MS.gene031445.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.77e-12 65.1
MS.gene031445.t1 AT5G65080 42.029 69 39 1 9 76 9 77 1.89e-11 61.6
MS.gene031445.t1 AT4G37435 42.254 71 40 1 9 78 2 72 2.34e-11 61.2
MS.gene031445.t1 AT5G65080 48.148 54 28 0 9 62 9 62 5.55e-11 60.5
MS.gene031445.t1 AT2G03060 27.315 216 117 13 9 196 2 205 6.18e-11 62.0
MS.gene031445.t1 AT2G03060 27.315 216 117 13 9 196 2 205 6.18e-11 62.0
MS.gene031445.t1 AT2G03060 27.315 216 117 13 9 196 2 205 6.18e-11 62.0
MS.gene031445.t1 AT2G03060 27.315 216 117 13 9 196 2 205 6.48e-11 62.0

Find 54 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATGATGCCATCATTT+TGG 0.152250 2.1:+20991566 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.241179 2.1:-20991158 MS.gene031445:CDS
CCCCATTCATCTTTCGTTGT+TGG 0.261530 2.1:+20991440 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.309906 2.1:+20991613 None:intergenic
TTGTTGAAACCAAACAAATA+AGG 0.314433 2.1:+20991163 None:intergenic
TTTGATTCTTGTTGAGGATT+TGG 0.321722 2.1:+20991223 None:intergenic
ATGTTGCAACCTTATTTGTT+TGG 0.345480 2.1:-20991172 MS.gene031445:CDS
TGATGGCATCATGGAATTCA+TGG 0.359601 2.1:-20991560 MS.gene031445:CDS
TTGTTGGACAACATGCTGAT+AGG 0.363582 2.1:-20991330 MS.gene031445:CDS
GGATTTGGTTGATGCTCTAT+AGG 0.365710 2.1:+20991238 None:intergenic
GAGGATCTTCAGAAACTTGT+TGG 0.372862 2.1:-20991346 MS.gene031445:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.386179 2.1:-20991157 MS.gene031445:CDS
TGATTTATTAAAGAAGGCTT+TGG 0.388057 2.1:-20991368 MS.gene031445:CDS
CCAACTTGATTTATTAAAGA+AGG 0.389126 2.1:-20991374 MS.gene031445:CDS
TGCTGATAGGGTTGAAATGC+AGG 0.408645 2.1:-20991317 MS.gene031445:CDS
TCCCATTGATGAGATGAATA+TGG 0.418270 2.1:-20991398 MS.gene031445:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 2.1:-20991694 MS.gene031445:CDS
GACCATATTCATCTCATCAA+TGG 0.429531 2.1:+20991396 None:intergenic
AACAAATAAGGTTGCAACAT+AGG 0.449382 2.1:+20991175 None:intergenic
AACAATATGGGAGGAGAAGA+TGG 0.453701 2.1:-20991145 MS.gene031445:CDS
GCCAACAACGAAAGATGAAT+GGG 0.457149 2.1:-20991441 MS.gene031445:CDS
GGAAAATTTGATTCTTGTTG+AGG 0.459812 2.1:+20991217 None:intergenic
TTTATTAAAGAAGGCTTTGG+AGG 0.489471 2.1:-20991365 MS.gene031445:CDS
ACCATATTCATCTCATCAAT+GGG 0.490788 2.1:+20991397 None:intergenic
GAAGATGGACATGGTCCTCA+TGG 0.494228 2.1:-20991130 MS.gene031445:CDS
ACAAATAAGGTTGCAACATA+GGG 0.494926 2.1:+20991176 None:intergenic
GTTGGCTCAGCTCATTCTCA+CGG 0.502310 2.1:+20991458 None:intergenic
AGCCAACAACGAAAGATGAA+TGG 0.503597 2.1:-20991442 MS.gene031445:CDS
TGGTTATCCAAATGTTGAAA+CGG 0.505688 2.1:-20991620 MS.gene031445:CDS
CTGATCCCACCCCAAAATGA+TGG 0.513576 2.1:-20991577 MS.gene031445:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 2.1:+20991681 None:intergenic
CCTTCTTTAATAAATCAAGT+TGG 0.517926 2.1:+20991374 None:intergenic
ACCCCAAAATGATGGCATCA+TGG 0.541533 2.1:-20991569 MS.gene031445:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2.1:-20991732 MS.gene031445:CDS
GCCAAGGTGCGTGAGCTCAA+TGG 0.556002 2.1:-20991523 MS.gene031445:CDS
TTGATGCTCTATAGGCATGT+TGG 0.571335 2.1:+20991246 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2.1:-20991733 MS.gene031445:CDS
ACCATTGAGCTCACGCACCT+TGG 0.575766 2.1:+20991522 None:intergenic
TGTTGGACAACATGCTGATA+GGG 0.576064 2.1:-20991329 MS.gene031445:CDS
ATGCTCTATAGGCATGTTGG+AGG 0.590407 2.1:+20991249 None:intergenic
TTTGGTTTCAACAATATGGG+AGG 0.603714 2.1:-20991154 MS.gene031445:CDS
AAGATGGACATGGTCCTCAT+GGG 0.606190 2.1:-20991129 MS.gene031445:CDS
TATATTCTCACCTAGTGAGA+AGG 0.611194 2.1:-20991653 MS.gene031445:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 2.1:+20991719 None:intergenic
GAGCAATATATGCACCACAA+AGG 0.628392 2.1:+20991680 None:intergenic
AATGAAAATACCTTCTCACT+AGG 0.637760 2.1:+20991643 None:intergenic
GCTGATAGGGTTGAAATGCA+GGG 0.657468 2.1:-20991316 MS.gene031445:CDS
CCAACAACGAAAGATGAATG+GGG 0.679618 2.1:-20991440 MS.gene031445:CDS
TGTGCATTAGCTATGTCGGG+CGG 0.688759 2.1:-20991823 None:intergenic
CAACAACGAAAGATGAATGG+GGG 0.695270 2.1:-20991439 MS.gene031445:CDS
ATGGGAGGAGAAGATGGACA+TGG 0.698479 2.1:-20991139 MS.gene031445:CDS
TCGGGCGGAAAGAAAACTCG+AGG 0.704252 2.1:-20991808 MS.gene031445:CDS
TCAGATCAAACGAACCCATG+AGG 0.716103 2.1:+20991115 None:intergenic
TGGCATCATGGAATTCATGG+AGG 0.743879 2.1:-20991557 MS.gene031445:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTCCAACAAAAAATGGAA+GGG + chr2.1:20991655-20991674 None:intergenic 25.0%
! CCAACTTGATTTATTAAAGA+AGG - chr2.1:20991557-20991576 MS.gene031445:CDS 25.0%
! CCTTCTTTAATAAATCAAGT+TGG + chr2.1:20991560-20991579 None:intergenic 25.0%
! TGATTTATTAAAGAAGGCTT+TGG - chr2.1:20991563-20991582 MS.gene031445:CDS 25.0%
! TTGTTGAAACCAAACAAATA+AGG + chr2.1:20991771-20991790 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr2.1:20991774-20991793 MS.gene031445:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr2.1:20991773-20991792 MS.gene031445:CDS 25.0%
AACAAATAAGGTTGCAACAT+AGG + chr2.1:20991759-20991778 None:intergenic 30.0%
AATGAAAATACCTTCTCACT+AGG + chr2.1:20991291-20991310 None:intergenic 30.0%
ACAAATAAGGTTGCAACATA+GGG + chr2.1:20991758-20991777 None:intergenic 30.0%
ACCATATTCATCTCATCAAT+GGG + chr2.1:20991537-20991556 None:intergenic 30.0%
CATTTCCAACAAAAAATGGA+AGG + chr2.1:20991656-20991675 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr2.1:20991660-20991679 None:intergenic 30.0%
GGAAAATTTGATTCTTGTTG+AGG + chr2.1:20991717-20991736 None:intergenic 30.0%
TGGTTATCCAAATGTTGAAA+CGG - chr2.1:20991311-20991330 MS.gene031445:CDS 30.0%
TTTGATTCTTGTTGAGGATT+TGG + chr2.1:20991711-20991730 None:intergenic 30.0%
! ATGTTGCAACCTTATTTGTT+TGG - chr2.1:20991759-20991778 MS.gene031445:CDS 30.0%
! TTTATTAAAGAAGGCTTTGG+AGG - chr2.1:20991566-20991585 MS.gene031445:CDS 30.0%
!!! AGTGAGAAGGTATTTTCATT+TGG - chr2.1:20991291-20991310 MS.gene031445:CDS 30.0%
!!! CTTCCATTTTTTGTTGGAAA+TGG - chr2.1:20991654-20991673 MS.gene031445:CDS 30.0%
AACAAAAAATGGAAGGGCTT+GGG + chr2.1:20991649-20991668 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG + chr2.1:20991253-20991272 None:intergenic 35.0%
GACCATATTCATCTCATCAA+TGG + chr2.1:20991538-20991557 None:intergenic 35.0%
GAGATGAAAAAGATGAGCAA+TGG - chr2.1:20991159-20991178 MS.gene031445:CDS 35.0%
TATATTCTCACCTAGTGAGA+AGG - chr2.1:20991278-20991297 MS.gene031445:CDS 35.0%
TCCCATTGATGAGATGAATA+TGG - chr2.1:20991533-20991552 MS.gene031445:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG + chr2.1:20991321-20991340 None:intergenic 35.0%
! ATTCCATGATGCCATCATTT+TGG + chr2.1:20991368-20991387 None:intergenic 35.0%
! TTCCATGATGCCATCATTTT+GGG + chr2.1:20991367-20991386 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+AGG - chr2.1:20991777-20991796 MS.gene031445:CDS 35.0%
AACAATATGGGAGGAGAAGA+TGG - chr2.1:20991786-20991805 MS.gene031445:CDS 40.0%
AGCCAACAACGAAAGATGAA+TGG - chr2.1:20991489-20991508 MS.gene031445:CDS 40.0%
CAACAAAAAATGGAAGGGCT+TGG + chr2.1:20991650-20991669 None:intergenic 40.0%
CAACAACGAAAGATGAATGG+GGG - chr2.1:20991492-20991511 MS.gene031445:CDS 40.0%
CCAACAACGAAAGATGAATG+GGG - chr2.1:20991491-20991510 MS.gene031445:CDS 40.0%
GAGCAATATATGCACCACAA+AGG + chr2.1:20991254-20991273 None:intergenic 40.0%
GAGGATCTTCAGAAACTTGT+TGG - chr2.1:20991585-20991604 MS.gene031445:CDS 40.0%
GCCAACAACGAAAGATGAAT+GGG - chr2.1:20991490-20991509 MS.gene031445:CDS 40.0%
GGGTTATGAAAAAACTCAGC+TGG + chr2.1:20991738-20991757 None:intergenic 40.0%
TGATGGCATCATGGAATTCA+TGG - chr2.1:20991371-20991390 MS.gene031445:CDS 40.0%
TGTTGGACAACATGCTGATA+GGG - chr2.1:20991602-20991621 MS.gene031445:CDS 40.0%
TTGATGCTCTATAGGCATGT+TGG + chr2.1:20991688-20991707 None:intergenic 40.0%
TTGTTGGACAACATGCTGAT+AGG - chr2.1:20991601-20991620 MS.gene031445:CDS 40.0%
! GGATTTGGTTGATGCTCTAT+AGG + chr2.1:20991696-20991715 None:intergenic 40.0%
! TCCATGATGCCATCATTTTG+GGG + chr2.1:20991366-20991385 None:intergenic 40.0%
!!! CAAGCCCTTCCATTTTTTGT+TGG - chr2.1:20991648-20991667 MS.gene031445:CDS 40.0%
AAGATGGACATGGTCCTCAT+GGG - chr2.1:20991802-20991821 MS.gene031445:CDS 45.0%
ACCCCAAAATGATGGCATCA+TGG - chr2.1:20991362-20991381 MS.gene031445:CDS 45.0%
ATGCTCTATAGGCATGTTGG+AGG + chr2.1:20991685-20991704 None:intergenic 45.0%
CCCCATTCATCTTTCGTTGT+TGG + chr2.1:20991494-20991513 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr2.1:20991215-20991234 None:intergenic 45.0%
GCTGATAGGGTTGAAATGCA+GGG - chr2.1:20991615-20991634 MS.gene031445:CDS 45.0%
TGCTGATAGGGTTGAAATGC+AGG - chr2.1:20991614-20991633 MS.gene031445:CDS 45.0%
TGGCATCATGGAATTCATGG+AGG - chr2.1:20991374-20991393 MS.gene031445:CDS 45.0%
! AGATGAATGGGGGTCAGTTT+TGG - chr2.1:20991502-20991521 MS.gene031445:CDS 45.0%
!! ATGATGCCATCATTTTGGGG+TGG + chr2.1:20991363-20991382 None:intergenic 45.0%
!!! TGATGCCATCATTTTGGGGT+GGG + chr2.1:20991362-20991381 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr2.1:20991237-20991256 MS.gene031445:CDS 50.0%
ATGGGAGGAGAAGATGGACA+TGG - chr2.1:20991792-20991811 MS.gene031445:CDS 50.0%
CTGATCCCACCCCAAAATGA+TGG - chr2.1:20991354-20991373 MS.gene031445:CDS 50.0%
GAAGATGGACATGGTCCTCA+TGG - chr2.1:20991801-20991820 MS.gene031445:CDS 50.0%
! GGAGGATTTTCGTAGAGCCA+AGG - chr2.1:20991392-20991411 MS.gene031445:CDS 50.0%
! GTTGGCTCAGCTCATTCTCA+CGG + chr2.1:20991476-20991495 None:intergenic 50.0%
!! TGAATGGGGGTCAGTTTTGG+TGG - chr2.1:20991505-20991524 MS.gene031445:CDS 50.0%
ACCATTGAGCTCACGCACCT+TGG + chr2.1:20991412-20991431 None:intergenic 55.0%
TCGGGCGGAAAGAAAACTCG+AGG - chr2.1:20991123-20991142 MS.gene031445:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr2.1:20991198-20991217 MS.gene031445:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr2.1:20991199-20991218 MS.gene031445:CDS 55.0%
GCCAAGGTGCGTGAGCTCAA+TGG - chr2.1:20991408-20991427 MS.gene031445:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 20991120 20991833 20991120 ID=MS.gene031445
chr2.1 mRNA 20991120 20991833 20991120 ID=MS.gene031445.t1;Parent=MS.gene031445
chr2.1 exon 20991120 20991833 20991120 ID=MS.gene031445.t1.exon1;Parent=MS.gene031445.t1
chr2.1 CDS 20991120 20991833 20991120 ID=cds.MS.gene031445.t1;Parent=MS.gene031445.t1
Gene Sequence

>MS.gene031445

ATGTCGGGCGGAAAGAAAACTCGAGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGGAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTGATTATATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTTATCCAAATGTTGAAACGGTCATAGATCGTTATCTGTCTCTGATCCCACCCCAAAATGATGGCATCATGGAATTCATGGAGGATTTTCGTAGAGCCAAGGTGCGTGAGCTCAATGGTATATTGACTCGTATGAACGATGCAATAGACATTGACAAGAACCGTGAGAATGAGCTGAGCCAACAACGAAAGATGAATGGGGGTCAGTTTTGGTGGACTCGTCCCATTGATGAGATGAATATGGTCCAACTTGATTTATTAAAGAAGGCTTTGGAGGATCTTCAGAAACTTGTTGGACAACATGCTGATAGGGTTGAAATGCAGGGTACTTCTACCCAAGCCCTTCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTATAGAGCATCAACCAAATCCTCAACAAGAATCAAATTTTCCAGCTGAGTTTTTTCATAACCCTATGTTGCAACCTTATTTGTTTGGTTTCAACAATATGGGAGGAGAAGATGGACATGGTCCTCATGGGTTCGTTTGA
Protein sequence

>MS.gene031445.t1

MSGGKKTRGRQKIEMKKMSNGSNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGYPNVETVIDRYLSLIPPQNDGIMEFMEDFRRAKVRELNGILTRMNDAIDIDKNRENELSQQRKMNGGQFWWTRPIDEMNMVQLDLLKKALEDLQKLVGQHADRVEMQGTSTQALPFFVGNGSSSNMPIEHQPNPQQESNFPAEFFHNPMLQPYLFGFNNMGGEDGHGPHGFV