Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031850.t1 | XP_003601098.1 | 98.6 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 7.60E-194 | 686.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031850.t1 | Q9SL92 | 64.8 | 355 | 116 | 4 | 1 | 347 | 1 | 354 | 1.7e-125 | 450.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031850.t1 | G7J3L5 | 98.6 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 5.5e-194 | 686.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031850 | MS.gene29060 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031850.t1 | MTR_3g073010 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031850.t1 | AT2G25710 | 67.164 | 335 | 103 | 4 | 18 | 347 | 22 | 354 | 5.42e-166 | 469 |
| MS.gene031850.t1 | AT2G25710 | 67.164 | 335 | 103 | 4 | 18 | 347 | 22 | 354 | 5.42e-166 | 469 |
| MS.gene031850.t1 | AT2G25710 | 70.159 | 315 | 92 | 2 | 34 | 347 | 3 | 316 | 5.23e-165 | 465 |
| MS.gene031850.t1 | AT2G25710 | 70.159 | 315 | 92 | 2 | 34 | 347 | 3 | 316 | 5.23e-165 | 465 |
| MS.gene031850.t1 | AT1G37150 | 69.453 | 311 | 93 | 2 | 38 | 347 | 7 | 316 | 2.35e-161 | 456 |
| MS.gene031850.t1 | AT1G37150 | 66.894 | 293 | 95 | 2 | 38 | 329 | 7 | 298 | 2.00e-144 | 414 |
| MS.gene031850.t1 | AT1G37150 | 67.708 | 288 | 91 | 2 | 38 | 324 | 7 | 293 | 9.45e-144 | 410 |
| MS.gene031850.t1 | AT1G37150 | 67.708 | 288 | 91 | 2 | 38 | 324 | 7 | 293 | 9.45e-144 | 410 |
| MS.gene031850.t1 | AT1G37150 | 67.708 | 288 | 91 | 2 | 38 | 324 | 7 | 293 | 9.45e-144 | 410 |
| MS.gene031850.t1 | AT1G37150 | 67.832 | 286 | 90 | 2 | 38 | 322 | 7 | 291 | 1.50e-143 | 409 |
| MS.gene031850.t1 | AT1G37150 | 67.832 | 286 | 90 | 2 | 38 | 322 | 7 | 291 | 1.50e-143 | 409 |
| MS.gene031850.t1 | AT1G37150 | 67.159 | 271 | 78 | 1 | 88 | 347 | 3 | 273 | 1.93e-136 | 391 |
| MS.gene031850.t1 | AT2G25710 | 64.808 | 287 | 94 | 4 | 18 | 299 | 22 | 306 | 8.36e-136 | 390 |
| MS.gene031850.t1 | AT2G25710 | 64.808 | 287 | 94 | 4 | 18 | 299 | 22 | 306 | 8.36e-136 | 390 |
| MS.gene031850.t1 | AT2G25710 | 64.103 | 273 | 91 | 4 | 18 | 285 | 22 | 292 | 6.55e-125 | 362 |
| MS.gene031850.t1 | AT2G25710 | 64.103 | 273 | 91 | 4 | 18 | 285 | 22 | 292 | 6.55e-125 | 362 |
| MS.gene031850.t1 | AT1G37150 | 71.287 | 202 | 58 | 0 | 123 | 324 | 9 | 210 | 1.74e-109 | 320 |
Find 84 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTTAGAACTGTATTTA+AGG | 0.111945 | 3.4:-71826412 | None:intergenic |
| AACCTTTAGGTTAATTAATA+AGG | 0.181753 | 3.4:+71831617 | MS.gene031850:intron |
| GAACATCTTCTCTTTGAAAT+TGG | 0.211376 | 3.4:-71826452 | None:intergenic |
| TAGGATTCATATACTTTATA+TGG | 0.214397 | 3.4:-71835165 | None:intergenic |
| TCTCTTTCTACCAATCAATT+TGG | 0.239071 | 3.4:+71824962 | MS.gene031850:CDS |
| AATTCATGAATGAACTAAAT+TGG | 0.279539 | 3.4:-71824940 | None:intergenic |
| CGAACATGCGGTAACGATTC+AGG | 0.287803 | 3.4:+71829349 | MS.gene031850:CDS |
| AGGGAGCTTGAGAGTGTTAT+TGG | 0.294498 | 3.4:-71824849 | None:intergenic |
| TCAAACCTCTTCCCTTGTTC+TGG | 0.304902 | 3.4:-71825280 | None:intergenic |
| CCGTTTAAGTACAGATCATT+TGG | 0.323737 | 3.4:-71826113 | None:intergenic |
| AGTTCAGTATGTTGTTTCCT+TGG | 0.354644 | 3.4:+71825479 | MS.gene031850:CDS |
| GAACTCTGAATGTAAAATAA+TGG | 0.359620 | 3.4:-71824888 | None:intergenic |
| ATGGATAGTTCTTTCTTGTC+AGG | 0.365223 | 3.4:-71824869 | None:intergenic |
| CAGGGTGGAGCTCACACATT+TGG | 0.389032 | 3.4:-71829708 | None:intergenic |
| ACTGTATTTAAGGATGTTGT+TGG | 0.393939 | 3.4:-71826402 | None:intergenic |
| ATTTCAAAGAGAAGATGTTC+TGG | 0.407060 | 3.4:+71826455 | MS.gene031850:CDS |
| AGCTGTGGATTGCAGTTTGT+TGG | 0.408229 | 3.4:+71824775 | MS.gene031850:intron |
| TTCCATTACCTATTACCATC+AGG | 0.410856 | 3.4:-71829727 | None:intergenic |
| CCAAATGATCTGTACTTAAA+CGG | 0.410986 | 3.4:+71826113 | MS.gene031850:CDS |
| AGCTCCACCCTGATGGTAAT+AGG | 0.416462 | 3.4:+71829719 | MS.gene031850:CDS |
| AATTTGGCAGGCTTCTCATA+TGG | 0.421581 | 3.4:+71824978 | MS.gene031850:CDS |
| TACTTAAACGGATTTAAAGT+TGG | 0.432774 | 3.4:+71826125 | MS.gene031850:CDS |
| TTGTAGGGTTTGACGTCCTC+GGG | 0.435328 | 3.4:+71829658 | MS.gene031850:intron |
| TTTGTAGGGTTTGACGTCCT+CGG | 0.435494 | 3.4:+71829657 | MS.gene031850:intron |
| GACGTCCTCGGGATATTTGT+TGG | 0.437033 | 3.4:+71829669 | MS.gene031850:CDS |
| GAAAACATCAGGCAACCTAA+TGG | 0.441676 | 3.4:-71825417 | None:intergenic |
| CAGGTCGGTCAAAGAATGCC+TGG | 0.453946 | 3.4:+71825388 | MS.gene031850:intron |
| GGCTATCACAGAGGCAATCA+AGG | 0.464240 | 3.4:+71825500 | MS.gene031850:CDS |
| TCTTGTAATATAGTTCCTCT+AGG | 0.468024 | 3.4:-71828965 | None:intergenic |
| GCAGAGTAAAAGAAAACATC+AGG | 0.469791 | 3.4:-71825428 | None:intergenic |
| AATGCCTGGGAGTCTCCATT+AGG | 0.471596 | 3.4:+71825402 | MS.gene031850:CDS |
| GAGAAGCCTGCCAAATTGAT+TGG | 0.473011 | 3.4:-71824972 | None:intergenic |
| TCATGCATTACCGGTAGTAT+AGG | 0.474766 | 3.4:-71835200 | None:intergenic |
| TTTCTACCAATCAATTTGGC+AGG | 0.476100 | 3.4:+71824966 | MS.gene031850:CDS |
| TTGTTGACCCGTGCGTCGCA+CGG | 0.484123 | 3.4:-71835124 | None:intergenic |
| GAAACAACATACTGAACTAA+AGG | 0.493234 | 3.4:-71825474 | None:intergenic |
| TATTCGACCCGTGCGACGCA+CGG | 0.494277 | 3.4:+71835116 | MS.gene031850:CDS |
| CATGAATGAACTAAATTGGA+AGG | 0.495238 | 3.4:-71824936 | None:intergenic |
| CTTGTAATATAGTTCCTCTA+GGG | 0.500499 | 3.4:-71828964 | None:intergenic |
| TGTTGACCCGTGCGTCGCAC+GGG | 0.503970 | 3.4:-71835123 | None:intergenic |
| CTTCTTTGATTTATATGTAG+AGG | 0.504393 | 3.4:-71826162 | None:intergenic |
| TTTACTCTGCAAATGGAGGA+TGG | 0.511964 | 3.4:+71825441 | MS.gene031850:CDS |
| CTCTGCAAATGGAGGATGGA+CGG | 0.514061 | 3.4:+71825445 | MS.gene031850:CDS |
| TAGGTTAATTAATAAGGTGT+TGG | 0.514328 | 3.4:+71831623 | MS.gene031850:intron |
| TGGATAGTTCTTTCTTGTCA+GGG | 0.530693 | 3.4:-71824868 | None:intergenic |
| CCAACACATACTGTACCAAC+CGG | 0.533546 | 3.4:-71825251 | None:intergenic |
| TTAAACGGATTTAAAGTTGG+AGG | 0.536654 | 3.4:+71826128 | MS.gene031850:CDS |
| AAGAAGTTCAATATCAGTGC+AGG | 0.537210 | 3.4:+71826179 | MS.gene031850:CDS |
| TCCATTACCTATTACCATCA+GGG | 0.541073 | 3.4:-71829726 | None:intergenic |
| TGCAGTTTGTTGGTTCTATG+TGG | 0.543232 | 3.4:+71824785 | MS.gene031850:CDS |
| TCTGCAAATGGAGGATGGAC+GGG | 0.547695 | 3.4:+71825446 | MS.gene031850:CDS |
| TCGGGATATTTGTTGGCAGT+CGG | 0.549135 | 3.4:+71829676 | MS.gene031850:CDS |
| ATTCGACCCGTGCGACGCAC+GGG | 0.553179 | 3.4:+71835117 | MS.gene031850:CDS |
| ATTACAAGACATGGTTGCAC+AGG | 0.556223 | 3.4:+71828979 | MS.gene031850:CDS |
| TATACACTCATGGCATCCTC+AGG | 0.556833 | 3.4:+71824551 | MS.gene031850:CDS |
| TGAGTGTATATGTATAAAGA+TGG | 0.560836 | 3.4:-71824538 | None:intergenic |
| GCAACCTAATGGAGACTCCC+AGG | 0.571631 | 3.4:-71825406 | None:intergenic |
| TCTTTATACATATACACTCA+TGG | 0.584917 | 3.4:+71824541 | MS.gene031850:CDS |
| GTTGTAAACCCTCCTTGTGG+TGG | 0.586071 | 3.4:-71824513 | None:intergenic |
| GTTCTAAGAGAATTGTCTGT+GGG | 0.590225 | 3.4:+71826423 | MS.gene031850:CDS |
| CGTTGTTATTAGCCACCACA+AGG | 0.591906 | 3.4:+71824501 | MS.gene031850:CDS |
| GATATCCAGAACAAGGGAAG+AGG | 0.594894 | 3.4:+71825275 | MS.gene031850:CDS |
| CGGTACGACTCCTATACTAC+CGG | 0.595128 | 3.4:+71835190 | MS.gene031850:CDS |
| TGTTGGTGATATCCAGAACA+AGG | 0.598168 | 3.4:+71825268 | MS.gene031850:CDS |
| GCATTGATGTTAAAATCAAG+TGG | 0.601093 | 3.4:+71826090 | MS.gene031850:CDS |
| GTTATTAGCCACCACAAGGA+GGG | 0.602791 | 3.4:+71824505 | MS.gene031850:CDS |
| AGGTCGGTCAAAGAATGCCT+GGG | 0.612004 | 3.4:+71825389 | MS.gene031850:intron |
| CCGGTTGGTACAGTATGTGT+TGG | 0.612660 | 3.4:+71825251 | MS.gene031850:CDS |
| TCATGTGTCGAAGTTAACTC+AGG | 0.633045 | 3.4:-71825004 | None:intergenic |
| ATGTGTGAGCTCCACCCTGA+TGG | 0.635556 | 3.4:+71829712 | MS.gene031850:CDS |
| GATTGCCTCTGTGATAGCCA+AGG | 0.635755 | 3.4:-71825496 | None:intergenic |
| AGGAACTATATTACAAGACA+TGG | 0.642353 | 3.4:+71828970 | MS.gene031850:CDS |
| GTATAGGAGTCGTACCGTGT+AGG | 0.644866 | 3.4:-71835184 | None:intergenic |
| TGTTATTAGCCACCACAAGG+AGG | 0.667643 | 3.4:+71824504 | MS.gene031850:CDS |
| AGTTCTAAGAGAATTGTCTG+TGG | 0.675294 | 3.4:+71826422 | MS.gene031850:CDS |
| TGCAGGATTTCAAACCCTAG+AGG | 0.679588 | 3.4:+71828950 | MS.gene031850:intron |
| ATTACCTATTACCATCAGGG+TGG | 0.691674 | 3.4:-71829723 | None:intergenic |
| GACTGCCAACAAATATCCCG+AGG | 0.701770 | 3.4:-71829674 | None:intergenic |
| TGTTTCCTTGGCTATCACAG+AGG | 0.702795 | 3.4:+71825491 | MS.gene031850:CDS |
| GTTGGTGATATCCAGAACAA+GGG | 0.711490 | 3.4:+71825269 | MS.gene031850:CDS |
| GGACAAAGTAGTCGAACATG+CGG | 0.723999 | 3.4:+71829337 | MS.gene031850:CDS |
| TAAAGTATATGAATCCTACA+CGG | 0.764282 | 3.4:+71835170 | MS.gene031850:CDS |
| GTAGTTGTAAACCCTCCTTG+TGG | 0.780824 | 3.4:-71824516 | None:intergenic |
| TATTGTACAAGAAAAGAACG+AGG | 0.782276 | 3.4:+71829316 | MS.gene031850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71824470 | 71835215 | 71824470 | ID=MS.gene031850 |
| chr3.4 | mRNA | 71824470 | 71835215 | 71824470 | ID=MS.gene031850.t1;Parent=MS.gene031850 |
| chr3.4 | exon | 71824470 | 71824572 | 71824470 | ID=MS.gene031850.t1.exon1;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71824470 | 71824572 | 71824470 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71824777 | 71825038 | 71824777 | ID=MS.gene031850.t1.exon2;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71824777 | 71825038 | 71824777 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71825235 | 71825296 | 71825235 | ID=MS.gene031850.t1.exon3;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71825235 | 71825296 | 71825235 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71825391 | 71825539 | 71825391 | ID=MS.gene031850.t1.exon4;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71825391 | 71825539 | 71825391 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71826080 | 71826200 | 71826080 | ID=MS.gene031850.t1.exon5;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71826080 | 71826200 | 71826080 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71826373 | 71826528 | 71826373 | ID=MS.gene031850.t1.exon6;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71826373 | 71826528 | 71826373 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71828955 | 71829000 | 71828955 | ID=MS.gene031850.t1.exon7;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71828955 | 71829000 | 71828955 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71829304 | 71829370 | 71829304 | ID=MS.gene031850.t1.exon8;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71829304 | 71829370 | 71829304 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71829664 | 71829740 | 71829664 | ID=MS.gene031850.t1.exon9;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71829664 | 71829740 | 71829664 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71831626 | 71831644 | 71831626 | ID=MS.gene031850.t1.exon10;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71831626 | 71831644 | 71831626 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| chr3.4 | exon | 71835114 | 71835215 | 71835114 | ID=MS.gene031850.t1.exon11;Parent=MS.gene031850.t1 |
| chr3.4 | CDS | 71835114 | 71835215 | 71835114 | ID=cds.MS.gene031850.t1;Parent=MS.gene031850.t1 |
| Gene Sequence |
| Protein sequence |