AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29060.t1 MTR_3g073010 98.559 347 5 0 1 347 1 347 0.0 712
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29060.t1 AT2G25710 67.164 335 103 4 18 347 22 354 2.40e-166 468
MS.gene29060.t1 AT2G25710 67.164 335 103 4 18 347 22 354 2.40e-166 468
MS.gene29060.t1 AT2G25710 70.159 315 92 2 34 347 3 316 1.39e-165 465
MS.gene29060.t1 AT2G25710 70.159 315 92 2 34 347 3 316 1.39e-165 465
MS.gene29060.t1 AT1G37150 69.453 311 93 2 38 347 7 316 5.81e-162 456
MS.gene29060.t1 AT1G37150 66.894 293 95 2 38 329 7 298 4.62e-145 414
MS.gene29060.t1 AT1G37150 67.708 288 91 2 38 324 7 293 2.36e-144 410
MS.gene29060.t1 AT1G37150 67.708 288 91 2 38 324 7 293 2.36e-144 410
MS.gene29060.t1 AT1G37150 67.708 288 91 2 38 324 7 293 2.36e-144 410
MS.gene29060.t1 AT1G37150 67.832 286 90 2 38 322 7 291 2.97e-144 409
MS.gene29060.t1 AT1G37150 67.832 286 90 2 38 322 7 291 2.97e-144 409
MS.gene29060.t1 AT1G37150 67.159 271 78 1 88 347 3 273 4.05e-137 391
MS.gene29060.t1 AT2G25710 64.808 287 94 4 18 299 22 306 3.00e-136 390
MS.gene29060.t1 AT2G25710 64.808 287 94 4 18 299 22 306 3.00e-136 390
MS.gene29060.t1 AT2G25710 64.103 273 91 4 18 285 22 292 1.92e-125 362
MS.gene29060.t1 AT2G25710 64.103 273 91 4 18 285 22 292 1.92e-125 362
MS.gene29060.t1 AT1G37150 71.287 202 58 0 123 324 9 210 5.03e-110 320

Find 73 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTAGAACTGTATTTA+AGG 0.111945 3.2:-65789512 None:intergenic
GAACATCTTCTCTTTGAAAT+TGG 0.211376 3.2:-65789552 None:intergenic
TCTCTTTCTACCAATCAATT+TGG 0.239071 3.2:+65788062 MS.gene29060:CDS
AATTCATGAATGAACTAAAT+TGG 0.279539 3.2:-65788040 None:intergenic
CGAACATGCGGTAACGATTC+AGG 0.287803 3.2:+65792449 MS.gene29060:CDS
AGGGAGCTTGAGAGTGTTAT+TGG 0.294498 3.2:-65787949 None:intergenic
TCAAACCTCTTCCCTTGTTC+TGG 0.304902 3.2:-65788380 None:intergenic
CCGTTTAAGTACAGATCATT+TGG 0.323737 3.2:-65789213 None:intergenic
AGTTCAGTATGTTGTTTCCT+TGG 0.354644 3.2:+65788579 MS.gene29060:CDS
GAACTCTGAATGTAAAATAA+TGG 0.359620 3.2:-65787988 None:intergenic
ATGGATAGTTCTTTCTTGTC+AGG 0.365223 3.2:-65787969 None:intergenic
CAGGGTGGAGCTCACACATT+TGG 0.389032 3.2:-65792808 None:intergenic
ACTGTATTTAAGGATGTTGT+TGG 0.393939 3.2:-65789502 None:intergenic
ATTTCAAAGAGAAGATGTTC+TGG 0.407060 3.2:+65789555 MS.gene29060:CDS
AGCTGTGGATTGCAGTTTGT+TGG 0.408229 3.2:+65787875 MS.gene29060:intron
TTCCATTACCTATTACCATC+AGG 0.410856 3.2:-65792827 None:intergenic
CCAAATGATCTGTACTTAAA+CGG 0.410986 3.2:+65789213 MS.gene29060:CDS
AGCTCCACCCTGATGGTAAT+AGG 0.416462 3.2:+65792819 MS.gene29060:CDS
AATTTGGCAGGCTTCTCATA+TGG 0.421581 3.2:+65788078 MS.gene29060:CDS
TACTTAAACGGATTTAAAGT+TGG 0.432774 3.2:+65789225 MS.gene29060:CDS
TTGTAGGGTTTGACGTCCTC+GGG 0.435328 3.2:+65792758 MS.gene29060:intron
TTTGTAGGGTTTGACGTCCT+CGG 0.435494 3.2:+65792757 MS.gene29060:intron
GACGTCCTCGGGATATTTGT+TGG 0.437033 3.2:+65792769 MS.gene29060:CDS
GAAAACATCAGGCAACCTAA+TGG 0.441676 3.2:-65788517 None:intergenic
CAGGTCGGTCAAAGAATGCC+TGG 0.453946 3.2:+65788488 MS.gene29060:intron
GGCTATCACAGAGGCAATCA+AGG 0.464240 3.2:+65788600 MS.gene29060:CDS
TCTTGTAATATAGTTCCTCT+AGG 0.468024 3.2:-65792065 None:intergenic
GCAGAGTAAAAGAAAACATC+AGG 0.469791 3.2:-65788528 None:intergenic
AATGCCTGGGAGTCTCCATT+AGG 0.471596 3.2:+65788502 MS.gene29060:CDS
GAGAAGCCTGCCAAATTGAT+TGG 0.473011 3.2:-65788072 None:intergenic
TTTCTACCAATCAATTTGGC+AGG 0.476100 3.2:+65788066 MS.gene29060:CDS
GAAACAACATACTGAACTAA+AGG 0.493234 3.2:-65788574 None:intergenic
CATGAATGAACTAAATTGGA+AGG 0.495238 3.2:-65788036 None:intergenic
CTTGTAATATAGTTCCTCTA+GGG 0.500499 3.2:-65792064 None:intergenic
CTTCTTTGATTTATATGTAG+AGG 0.504393 3.2:-65789262 None:intergenic
TTTACTCTGCAAATGGAGGA+TGG 0.511964 3.2:+65788541 MS.gene29060:CDS
CTCTGCAAATGGAGGATGGA+CGG 0.514061 3.2:+65788545 MS.gene29060:CDS
TGGATAGTTCTTTCTTGTCA+GGG 0.530693 3.2:-65787968 None:intergenic
CCAACACATACTGTACCAAC+CGG 0.533546 3.2:-65788351 None:intergenic
TTAAACGGATTTAAAGTTGG+AGG 0.536654 3.2:+65789228 MS.gene29060:CDS
AAGAAGTTCAATATCAGTGC+AGG 0.537210 3.2:+65789279 MS.gene29060:CDS
TCCATTACCTATTACCATCA+GGG 0.541073 3.2:-65792826 None:intergenic
TGCAGTTTGTTGGTTCTATG+TGG 0.543232 3.2:+65787885 MS.gene29060:CDS
TCTGCAAATGGAGGATGGAC+GGG 0.547695 3.2:+65788546 MS.gene29060:CDS
TCGGGATATTTGTTGGCAGT+CGG 0.549135 3.2:+65792776 MS.gene29060:CDS
ATTACAAGACATGGTTGCAC+AGG 0.556223 3.2:+65792079 MS.gene29060:CDS
TATACACTCATGGCATCCTC+AGG 0.556833 3.2:+65787651 MS.gene29060:CDS
TGAGTGTATATGTATAAAGA+TGG 0.560836 3.2:-65787638 None:intergenic
GCAACCTAATGGAGACTCCC+AGG 0.571631 3.2:-65788506 None:intergenic
TCTTTATACATATACACTCA+TGG 0.584917 3.2:+65787641 MS.gene29060:CDS
GTTGTAAACCCTCCTTGTGG+TGG 0.586071 3.2:-65787613 None:intergenic
GTTCTAAGAGAATTGTCTGT+GGG 0.590225 3.2:+65789523 MS.gene29060:CDS
CGTTGTTATTAGCCACCACA+AGG 0.591906 3.2:+65787601 MS.gene29060:CDS
GATATCCAGAACAAGGGAAG+AGG 0.594894 3.2:+65788375 MS.gene29060:CDS
TGTTGGTGATATCCAGAACA+AGG 0.598168 3.2:+65788368 MS.gene29060:CDS
GCATTGATGTTAAAATCAAG+TGG 0.601093 3.2:+65789190 MS.gene29060:CDS
GTTATTAGCCACCACAAGGA+GGG 0.602791 3.2:+65787605 MS.gene29060:CDS
AGGTCGGTCAAAGAATGCCT+GGG 0.612004 3.2:+65788489 MS.gene29060:intron
CCGGTTGGTACAGTATGTGT+TGG 0.612660 3.2:+65788351 MS.gene29060:CDS
TCATGTGTCGAAGTTAACTC+AGG 0.633045 3.2:-65788104 None:intergenic
ATGTGTGAGCTCCACCCTGA+TGG 0.635556 3.2:+65792812 MS.gene29060:CDS
GATTGCCTCTGTGATAGCCA+AGG 0.635755 3.2:-65788596 None:intergenic
AGGAACTATATTACAAGACA+TGG 0.642353 3.2:+65792070 MS.gene29060:CDS
TGTTATTAGCCACCACAAGG+AGG 0.667643 3.2:+65787604 MS.gene29060:CDS
AGTTCTAAGAGAATTGTCTG+TGG 0.675294 3.2:+65789522 MS.gene29060:CDS
TGCAGGATTTCAAACCCTAG+AGG 0.679588 3.2:+65792050 MS.gene29060:intron
ATTACCTATTACCATCAGGG+TGG 0.691674 3.2:-65792823 None:intergenic
GACTGCCAACAAATATCCCG+AGG 0.701770 3.2:-65792774 None:intergenic
TGTTTCCTTGGCTATCACAG+AGG 0.702795 3.2:+65788591 MS.gene29060:CDS
GTTGGTGATATCCAGAACAA+GGG 0.711490 3.2:+65788369 MS.gene29060:CDS
GGACAAAGTAGTCGAACATG+CGG 0.723999 3.2:+65792437 MS.gene29060:CDS
GTAGTTGTAAACCCTCCTTG+TGG 0.780824 3.2:-65787616 None:intergenic
TATTGTACAAGAAAAGAACG+AGG 0.782276 3.2:+65792416 MS.gene29060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTAAAATATAACTTAAA+AGG - chr3.2:65788436-65788455 None:intergenic 10.0%
!! ACTTAAAATATAACTTAAAA+GGG - chr3.2:65788435-65788454 None:intergenic 10.0%
!!! AATTTATTTTAATGTCATTT+TGG + chr3.2:65789419-65789438 MS.gene29060:intron 10.0%
!!! AGGTAAATAAAATTTTTTTT+TGG - chr3.2:65788261-65788280 None:intergenic 10.0%
!!! TGTTTTTAGTTAAATATTTA+TGG + chr3.2:65791890-65791909 MS.gene29060:intron 10.0%
!! AAAAAGAAAAGAATTAAACT+TGG - chr3.2:65789795-65789814 None:intergenic 15.0%
!! ACATATTTAGAGAATTAAAA+TGG - chr3.2:65791440-65791459 None:intergenic 15.0%
!! AGTATTAAATTTAACACTTA+AGG + chr3.2:65788706-65788725 MS.gene29060:intron 15.0%
!! GTTATAGAAATTAAAAAAGT+TGG + chr3.2:65791648-65791667 MS.gene29060:intron 15.0%
!! TAGTTAGTTAGTTAAAAAAT+GGG + chr3.2:65791016-65791035 MS.gene29060:intron 15.0%
!! TCTATAATGAATTAAATTCA+TGG + chr3.2:65787788-65787807 MS.gene29060:intron 15.0%
!! TTAGTTAGTTAGTTAAAAAA+TGG + chr3.2:65791015-65791034 MS.gene29060:intron 15.0%
!!! AAATTTTCAAATGAATAACA+AGG - chr3.2:65791621-65791640 None:intergenic 15.0%
!!! AATTAAAAGCAATTAGTTTT+GGG - chr3.2:65791751-65791770 None:intergenic 15.0%
!!! AGTCTTATTTTTTCAATTAT+TGG + chr3.2:65791346-65791365 MS.gene29060:intron 15.0%
!!! TAATTAAAAGCAATTAGTTT+TGG - chr3.2:65791752-65791771 None:intergenic 15.0%
!! AAAAAAGATCTTAAACATAC+TGG - chr3.2:65788294-65788313 None:intergenic 20.0%
!! AAAAAGATCTTAAACATACT+GGG - chr3.2:65788293-65788312 None:intergenic 20.0%
!! AAACTGTAAGTAATCATAAT+GGG + chr3.2:65790652-65790671 MS.gene29060:intron 20.0%
!! AATTCATGAATGAACTAAAT+TGG - chr3.2:65788043-65788062 None:intergenic 20.0%
!! ACAATATTAATTACTGAACT+CGG + chr3.2:65792216-65792235 MS.gene29060:intron 20.0%
!! AGAACCAATTTAAATATTTG+AGG - chr3.2:65791524-65791543 None:intergenic 20.0%
!! AGTTAGTTAGTTAAAAAATG+GGG + chr3.2:65791017-65791036 MS.gene29060:intron 20.0%
!! GAACCAATTTAAATATTTGA+GGG - chr3.2:65791523-65791542 None:intergenic 20.0%
!! TAACTAAAAACATAACACTT+TGG - chr3.2:65791882-65791901 None:intergenic 20.0%
!! TAATATTCTGGTAAAAGTAA+TGG + chr3.2:65788773-65788792 MS.gene29060:intron 20.0%
!! TAATATTGTGAAAACATGTT+GGG - chr3.2:65792205-65792224 None:intergenic 20.0%
!! TTAATATTGTGAAAACATGT+TGG - chr3.2:65792206-65792225 None:intergenic 20.0%
!! TTTAAGAAAATATGGATGTT+CGG - chr3.2:65791926-65791945 None:intergenic 20.0%
!!! AATTTTACCTTCCAATATTT+TGG + chr3.2:65791171-65791190 MS.gene29060:intron 20.0%
!!! AGTATAGTTTGTATTTTGTT+AGG + chr3.2:65790030-65790049 MS.gene29060:intron 20.0%
!!! ATTTTACCTTCCAATATTTT+GGG + chr3.2:65791172-65791191 MS.gene29060:intron 20.0%
!!! CTTCTCAAATTTGTTAAAAA+AGG - chr3.2:65789584-65789603 None:intergenic 20.0%
!!! GATAATTGCTTTTATTTGTA+GGG + chr3.2:65792743-65792762 MS.gene29060:intron 20.0%
!!! TATACACATAAAAGTTTTAC+AGG + chr3.2:65791713-65791732 MS.gene29060:intron 20.0%
!!! TTCAGATAATTTTGTAAATC+AGG - chr3.2:65792496-65792515 None:intergenic 20.0%
!!! TTTGATCTATTTTTGAATCA+AGG + chr3.2:65789607-65789626 MS.gene29060:CDS 20.0%
!!! TTTTTGGTAAATGTCAATTA+TGG - chr3.2:65791845-65791864 None:intergenic 20.0%
! AAAAAATGGGGAGAAATATA+GGG + chr3.2:65791029-65791048 MS.gene29060:intron 25.0%
! AAAACACGAAAAACAGAAAA+AGG - chr3.2:65788154-65788173 None:intergenic 25.0%
! AAAAGAATTAAACTTGGCAT+AGG - chr3.2:65789789-65789808 None:intergenic 25.0%
! AAAAGTAGTTAGGAAAGTTA+GGG + chr3.2:65789974-65789993 MS.gene29060:intron 25.0%
! AAAGAATTAAACTTGGCATA+GGG - chr3.2:65789788-65789807 None:intergenic 25.0%
! AAATTGTTACAAAAATGCAC+AGG - chr3.2:65789151-65789170 None:intergenic 25.0%
! AAGCTTATGTTTGGATTTAA+TGG + chr3.2:65790738-65790757 MS.gene29060:intron 25.0%
! AATCCTGCATTTAACATAAT+AGG - chr3.2:65792039-65792058 None:intergenic 25.0%
! ACTACTAAAAGAATAACAAG+GGG - chr3.2:65791329-65791348 None:intergenic 25.0%
! AGACTACTAAAAGAATAACA+AGG - chr3.2:65791331-65791350 None:intergenic 25.0%
! AGACTTTCAGAAAAGTTTAA+AGG - chr3.2:65791676-65791695 None:intergenic 25.0%
! AGCTTATGTTTGGATTTAAT+GGG + chr3.2:65790739-65790758 MS.gene29060:intron 25.0%
! ATAGCAGGTTTAAGAAAATA+TGG - chr3.2:65791934-65791953 None:intergenic 25.0%
! ATAGTTAATTTCCGATATAG+GGG + chr3.2:65791785-65791804 MS.gene29060:intron 25.0%
! ATCGATATAAACATTGAATG+TGG - chr3.2:65792670-65792689 None:intergenic 25.0%
! ATTAAATCCAAACATAAGCT+TGG - chr3.2:65790739-65790758 None:intergenic 25.0%
! ATTCATGGTTATTGAACAAT+TGG + chr3.2:65787803-65787822 MS.gene29060:intron 25.0%
! ATTCTTTCTACTATATGTTG+AGG - chr3.2:65790822-65790841 None:intergenic 25.0%
! CAAACTGTAAGTAATCATAA+TGG + chr3.2:65790651-65790670 MS.gene29060:intron 25.0%
! CATAGTTAATTTCCGATATA+GGG + chr3.2:65791784-65791803 MS.gene29060:intron 25.0%
! CTCTTTGAATTCCATAAATT+TGG - chr3.2:65790771-65790790 None:intergenic 25.0%
! GAACTCTGAATGTAAAATAA+TGG - chr3.2:65787991-65788010 None:intergenic 25.0%
! GACTACTAAAAGAATAACAA+GGG - chr3.2:65791330-65791349 None:intergenic 25.0%
! GGTAAAAGGGATTTATAATA+GGG + chr3.2:65789682-65789701 MS.gene29060:intron 25.0%
! TAAAAAATGGGGAGAAATAT+AGG + chr3.2:65791028-65791047 MS.gene29060:intron 25.0%
! TAACCTATTATGTTAAATGC+AGG + chr3.2:65792033-65792052 MS.gene29060:intron 25.0%
! TAGCTAGTAGTATAATACAT+GGG - chr3.2:65789362-65789381 None:intergenic 25.0%
! TATCTACTAAAATGCAAACT+TGG + chr3.2:65788876-65788895 MS.gene29060:intron 25.0%
! TCTTTATACATATACACTCA+TGG + chr3.2:65787641-65787660 MS.gene29060:CDS 25.0%
! TGAGTGTATATGTATAAAGA+TGG - chr3.2:65787641-65787660 None:intergenic 25.0%
! TGTGTACAAGTTTAATATTC+TGG + chr3.2:65788761-65788780 MS.gene29060:intron 25.0%
! TTAAGAAAATATGGATGTTC+GGG - chr3.2:65791925-65791944 None:intergenic 25.0%
! TTAGCTAGTAGTATAATACA+TGG - chr3.2:65789363-65789382 None:intergenic 25.0%
! TTATAGGTGCAAAAATAGTT+CGG + chr3.2:65790942-65790961 MS.gene29060:intron 25.0%
! TTCTCTTAGAACTGTATTTA+AGG - chr3.2:65789515-65789534 None:intergenic 25.0%
! TTGCCCTCAAATATTTAAAT+TGG + chr3.2:65791517-65791536 MS.gene29060:intron 25.0%
!! AAATGTATATTTTGCGGAAA+GGG + chr3.2:65789661-65789680 MS.gene29060:intron 25.0%
!! AATAAAAGCACATGATAAAG+AGG - chr3.2:65792139-65792158 None:intergenic 25.0%
!! AATTTTTCACGATCTGATTA+TGG - chr3.2:65788197-65788216 None:intergenic 25.0%
!! AGTTTGTATTTTGTTAGGAT+AGG + chr3.2:65790035-65790054 MS.gene29060:intron 25.0%
!! ATTGGTTGGTTAAATAAATG+GGG + chr3.2:65790128-65790147 MS.gene29060:intron 25.0%
!! ATTTTTCACGATCTGATTAT+GGG - chr3.2:65788196-65788215 None:intergenic 25.0%
!! CTTCTTTGATTTATATGTAG+AGG - chr3.2:65789265-65789284 None:intergenic 25.0%
!! GATTGGTTGGTTAAATAAAT+GGG + chr3.2:65790127-65790146 MS.gene29060:intron 25.0%
!! GATTTGATTGTTGTTATGAA+CGG + chr3.2:65791071-65791090 MS.gene29060:intron 25.0%
!! GTTTGTATTTTGTTAGGATA+GGG + chr3.2:65790036-65790055 MS.gene29060:intron 25.0%
!! TACTTAAACGGATTTAAAGT+TGG + chr3.2:65789225-65789244 MS.gene29060:CDS 25.0%
!! TACTTTTACTTCAATCATGA+AGG + chr3.2:65792163-65792182 MS.gene29060:intron 25.0%
!!! ATTTTAATGTCATTTTGGTG+AGG + chr3.2:65789424-65789443 MS.gene29060:intron 25.0%
!!! CGATAATTGCTTTTATTTGT+AGG + chr3.2:65792742-65792761 MS.gene29060:intron 25.0%
!!! TTGATTTTAACATCAATGCA+CGG - chr3.2:65789189-65789208 None:intergenic 25.0%
AAAAATGGGGAGAAATATAG+GGG + chr3.2:65791030-65791049 MS.gene29060:intron 30.0%
AAAAGAATAACAAGGGGTAA+GGG - chr3.2:65791323-65791342 None:intergenic 30.0%
AACAAATTCCATGATTTCAC+AGG + chr3.2:65789451-65789470 MS.gene29060:intron 30.0%
AAGAAGAAAAATCACTCACT+TGG + chr3.2:65791268-65791287 MS.gene29060:intron 30.0%
AAGAATTAAACTTGGCATAG+GGG - chr3.2:65789787-65789806 None:intergenic 30.0%
ACTGTATTTAAGGATGTTGT+TGG - chr3.2:65789505-65789524 None:intergenic 30.0%
AGATGTATACAACATCACAT+TGG - chr3.2:65791814-65791833 None:intergenic 30.0%
AGGAACTATATTACAAGACA+TGG + chr3.2:65792070-65792089 MS.gene29060:CDS 30.0%
ATAAATGCTTGCTTTGTGTT+TGG + chr3.2:65789063-65789082 MS.gene29060:intron 30.0%
ATAACAACTAGGGTTTATAG+AGG - chr3.2:65789939-65789958 None:intergenic 30.0%
ATACACTTATGACAAAGCTA+AGG - chr3.2:65791469-65791488 None:intergenic 30.0%
ATCCGACGTTTAAGAAAATT+TGG + chr3.2:65792006-65792025 MS.gene29060:intron 30.0%
ATCCTAGTTATGCTTTCATT+TGG + chr3.2:65792297-65792316 MS.gene29060:intron 30.0%
ATCTTAAGCACAAGAAAGTT+TGG - chr3.2:65788229-65788248 None:intergenic 30.0%
ATTTCAAAGAGAAGATGTTC+TGG + chr3.2:65789555-65789574 MS.gene29060:CDS 30.0%
ATTTGTCGTTCATGCTTAAT+AGG - chr3.2:65788953-65788972 None:intergenic 30.0%
CAAAAGTAGTTAGGAAAGTT+AGG + chr3.2:65789973-65789992 MS.gene29060:intron 30.0%
CATGAATGAACTAAATTGGA+AGG - chr3.2:65788039-65788058 None:intergenic 30.0%
CCAAATGATCTGTACTTAAA+CGG + chr3.2:65789213-65789232 MS.gene29060:CDS 30.0%
CCATAGTTAATTTCCGATAT+AGG + chr3.2:65791783-65791802 MS.gene29060:intron 30.0%
CCATTAAAATTGGACCTTAT+AGG + chr3.2:65790926-65790945 MS.gene29060:intron 30.0%
CCTATATCGGAAATTAACTA+TGG - chr3.2:65791786-65791805 None:intergenic 30.0%
CGTTATTGAATGAATCATAG+AGG - chr3.2:65790253-65790272 None:intergenic 30.0%
CTATATGTTTGATCACTCAA+TGG + chr3.2:65790900-65790919 MS.gene29060:intron 30.0%
CTTGTAATATAGTTCCTCTA+GGG - chr3.2:65792067-65792086 None:intergenic 30.0%
CTTTCCGCAAAATATACATT+TGG - chr3.2:65789662-65789681 None:intergenic 30.0%
GAAACAACATACTGAACTAA+AGG - chr3.2:65788577-65788596 None:intergenic 30.0%
GAATTCCATAAATTTGGACT+TGG - chr3.2:65790765-65790784 None:intergenic 30.0%
GGGTAAAAGGGATTTATAAT+AGG + chr3.2:65789681-65789700 MS.gene29060:intron 30.0%
GGTGACAAAAAAAAAAGAGA+AGG - chr3.2:65791372-65791391 None:intergenic 30.0%
GTGAACAGGATTTAATATAC+TGG - chr3.2:65789387-65789406 None:intergenic 30.0%
TAAAAGAATAACAAGGGGTA+AGG - chr3.2:65791324-65791343 None:intergenic 30.0%
TAAGATACTGTGACAAATCA+TGG - chr3.2:65789109-65789128 None:intergenic 30.0%
TACAGCAAATTTCACATCAA+TGG - chr3.2:65792536-65792555 None:intergenic 30.0%
TACTAAAATGCAAACTTGGT+TGG + chr3.2:65788880-65788899 MS.gene29060:intron 30.0%
TAGTAGTATAATACATGGGA+TGG - chr3.2:65789358-65789377 None:intergenic 30.0%
TATAGGTGCAAAAATAGTTC+GGG + chr3.2:65790943-65790962 MS.gene29060:intron 30.0%
TATTAAGCATGAACGACAAA+TGG + chr3.2:65788952-65788971 MS.gene29060:intron 30.0%
TATTGTACAAGAAAAGAACG+AGG + chr3.2:65792416-65792435 MS.gene29060:CDS 30.0%
TCTCTTTCTACCAATCAATT+TGG + chr3.2:65788062-65788081 MS.gene29060:CDS 30.0%
TCTTGTAATATAGTTCCTCT+AGG - chr3.2:65792068-65792087 None:intergenic 30.0%
TTATTGCATACTAGTATACG+TGG + chr3.2:65792335-65792354 MS.gene29060:intron 30.0%
TTGAATAGATGACTGAGAAT+AGG - chr3.2:65791130-65791149 None:intergenic 30.0%
TTGTTAAGAGCCCAAAATAT+TGG - chr3.2:65791185-65791204 None:intergenic 30.0%
! AAATTGCTTGCTAATTTACC+AGG + chr3.2:65789736-65789755 MS.gene29060:intron 30.0%
! CAAATGTATATTTTGCGGAA+AGG + chr3.2:65789660-65789679 MS.gene29060:intron 30.0%
! CCTATAAGGTCCAATTTTAA+TGG - chr3.2:65790929-65790948 None:intergenic 30.0%
! CGAACCAAATGTATATTTTG+CGG + chr3.2:65789655-65789674 MS.gene29060:intron 30.0%
! CTCCAAATTTTCTTAAACGT+CGG - chr3.2:65792011-65792030 None:intergenic 30.0%
! GCATTGATGTTAAAATCAAG+TGG + chr3.2:65789190-65789209 MS.gene29060:CDS 30.0%
! GTTTTCTTTTACTCTGCAAA+TGG + chr3.2:65788534-65788553 MS.gene29060:CDS 30.0%
! TTAAACGGATTTAAAGTTGG+AGG + chr3.2:65789228-65789247 MS.gene29060:CDS 30.0%
! TTCAAAAGCTGAATGGTTTT+TGG + chr3.2:65789024-65789043 MS.gene29060:intron 30.0%
! TTCCAAATGAAAGCATAACT+AGG - chr3.2:65792302-65792321 None:intergenic 30.0%
! TTGGTTGGTTAAATAAATGG+GGG + chr3.2:65790129-65790148 MS.gene29060:intron 30.0%
! TTGTAACAATTTTCATCCCA+GGG + chr3.2:65789159-65789178 MS.gene29060:intron 30.0%
! TTTGTAACAATTTTCATCCC+AGG + chr3.2:65789158-65789177 MS.gene29060:intron 30.0%
!! GAACATCTTCTCTTTGAAAT+TGG - chr3.2:65789555-65789574 None:intergenic 30.0%
!! GGATTGGTTGGTTAAATAAA+TGG + chr3.2:65790126-65790145 MS.gene29060:intron 30.0%
!! GTTTTAGATTATGCATTGGT+TGG + chr3.2:65788169-65788188 MS.gene29060:intron 30.0%
!! TCGTGTTTTAGATTATGCAT+TGG + chr3.2:65788165-65788184 MS.gene29060:intron 30.0%
!!! AGCACTTGGTTTTAAATTAC+TGG + chr3.2:65788643-65788662 MS.gene29060:intron 30.0%
!!! ATGGTGCTTTTTTGTGAATA+TGG + chr3.2:65788792-65788811 MS.gene29060:intron 30.0%
!!! GAACTATTTTTGCACCTATA+AGG - chr3.2:65790943-65790962 None:intergenic 30.0%
AAAAGCAAAGTGGGAAGATT+TGG + chr3.2:65790611-65790630 MS.gene29060:intron 35.0%
AAAATGGGGAGAAATATAGG+GGG + chr3.2:65791031-65791050 MS.gene29060:intron 35.0%
AAATAAATGGGGGGAATGTA+AGG + chr3.2:65790139-65790158 MS.gene29060:intron 35.0%
AACCTGCCAGATATCTTATT+GGG + chr3.2:65790341-65790360 MS.gene29060:intron 35.0%
AAGAAGTTCAATATCAGTGC+AGG + chr3.2:65789279-65789298 MS.gene29060:CDS 35.0%
AATAAATGGGGGGAATGTAA+GGG + chr3.2:65790140-65790159 MS.gene29060:intron 35.0%
ACATTCAAAATGTCATGCAG+TGG + chr3.2:65792384-65792403 MS.gene29060:intron 35.0%
ACCCTCTAAGTCAATAGTAA+AGG - chr3.2:65789843-65789862 None:intergenic 35.0%
ACTAACTGTAGACGAATTGT+TGG - chr3.2:65790798-65790817 None:intergenic 35.0%
ACTTAAAAGGGACAGAATCA+TGG - chr3.2:65788423-65788442 None:intergenic 35.0%
AGACAACTCTCATCATCATA+TGG + chr3.2:65788998-65789017 MS.gene29060:intron 35.0%
AGATTGTTAGCTGAACAACT+GGG + chr3.2:65787723-65787742 MS.gene29060:intron 35.0%
AGGAGAAATCCTTTGTACAT+TGG + chr3.2:65790198-65790217 MS.gene29060:intron 35.0%
AGTTGTGCTATGTCTTGTAA+TGG + chr3.2:65789817-65789836 MS.gene29060:intron 35.0%
ATATCTTATTGGGGGAAGAA+AGG + chr3.2:65790351-65790370 MS.gene29060:intron 35.0%
ATCCTATTCCTGTGAAATCA+TGG - chr3.2:65789462-65789481 None:intergenic 35.0%
ATGGAGTTTCAAAAGCTGAA+TGG + chr3.2:65789017-65789036 MS.gene29060:intron 35.0%
ATGGATAGTTCTTTCTTGTC+AGG - chr3.2:65787972-65787991 None:intergenic 35.0%
CAACAGTTTCCAATGTACAA+AGG - chr3.2:65790210-65790229 None:intergenic 35.0%
CAATATCAGTGCAGGTAATA+AGG + chr3.2:65789287-65789306 MS.gene29060:intron 35.0%
CAATCAGCACAAAATATAGC+AGG - chr3.2:65791949-65791968 None:intergenic 35.0%
CAATCATGAAGGAAACGATT+CGG + chr3.2:65792174-65792193 MS.gene29060:intron 35.0%
CCGTTTAAGTACAGATCATT+TGG - chr3.2:65789216-65789235 None:intergenic 35.0%
CTAACTGTAGACGAATTGTT+GGG - chr3.2:65790797-65790816 None:intergenic 35.0%
CTTTGTACATTGGAAACTGT+TGG + chr3.2:65790208-65790227 MS.gene29060:intron 35.0%
GAAGGATCATCATGTGAATT+TGG + chr3.2:65790165-65790184 MS.gene29060:intron 35.0%
GCAGAGTAAAAGAAAACATC+AGG - chr3.2:65788531-65788550 None:intergenic 35.0%
GTGACAAAAATGTAAGCACT+TGG + chr3.2:65788629-65788648 MS.gene29060:intron 35.0%
GTTCTTGAAGTGACATCAAA+TGG + chr3.2:65791539-65791558 MS.gene29060:intron 35.0%
GTTGTTCAGCTAACAATCTA+TGG - chr3.2:65787722-65787741 None:intergenic 35.0%
TAAGAGCCCAAAATATTGGA+AGG - chr3.2:65791181-65791200 None:intergenic 35.0%
TAGATTGTTAGCTGAACAAC+TGG + chr3.2:65787722-65787741 MS.gene29060:intron 35.0%
TATCTTATTGGGGGAAGAAA+GGG + chr3.2:65790352-65790371 MS.gene29060:intron 35.0%
TCAATGGCAGCCATTAAAAT+TGG + chr3.2:65790916-65790935 MS.gene29060:intron 35.0%
TCACCTAAGAACTTCAAAGA+GGG + chr3.2:65791387-65791406 MS.gene29060:intron 35.0%
TCCAAAACAGCAACAAAGTA+AGG + chr3.2:65790537-65790556 MS.gene29060:intron 35.0%
TCCACAGCTGATAAAAATAG+AGG - chr3.2:65787864-65787883 None:intergenic 35.0%
TGGATAGTTCTTTCTTGTCA+GGG - chr3.2:65787971-65787990 None:intergenic 35.0%
TGTCAACTTGACATCATTAC+TGG + chr3.2:65792704-65792723 MS.gene29060:intron 35.0%
TTAAATTCTCTGCAGTGAAC+AGG - chr3.2:65789401-65789420 None:intergenic 35.0%
TTAACCAACCAATCCCTATA+AGG - chr3.2:65790121-65790140 None:intergenic 35.0%
TTAGGAAAGTTAGGGTAGTT+AGG + chr3.2:65789982-65790001 MS.gene29060:intron 35.0%
TTCCATGATTTCACAGGAAT+AGG + chr3.2:65789457-65789476 MS.gene29060:intron 35.0%
TTTCCCTAACCAAATTCACT+GGG - chr3.2:65788684-65788703 None:intergenic 35.0%
TTTCTACCAATCAATTTGGC+AGG + chr3.2:65788066-65788085 MS.gene29060:CDS 35.0%
! AAATCTTCCCACTTTGCTTT+TGG - chr3.2:65790612-65790631 None:intergenic 35.0%
! ATGGCAGCAACATTTTTGAA+AGG + chr3.2:65788971-65788990 MS.gene29060:intron 35.0%
! ATTTTGCGGAAAGGGTAAAA+GGG + chr3.2:65789669-65789688 MS.gene29060:intron 35.0%
! TATTTTGCGGAAAGGGTAAA+AGG + chr3.2:65789668-65789687 MS.gene29060:intron 35.0%
! TCATCATGTGAATTTGGTGA+TGG + chr3.2:65790171-65790190 MS.gene29060:intron 35.0%
! TGCAGGTAATAAGGTATTCT+TGG + chr3.2:65789296-65789315 MS.gene29060:intron 35.0%
! TGCATACAACTTCACAGTTT+TGG - chr3.2:65788818-65788837 None:intergenic 35.0%
! TGGTTGGTTAAATAAATGGG+GGG + chr3.2:65790130-65790149 MS.gene29060:intron 35.0%
! TGTTTGTTAAGACTTCAGAG+TGG + chr3.2:65790980-65790999 MS.gene29060:intron 35.0%
! TTCTCTTGTTTCCCAACAAT+TGG + chr3.2:65790315-65790334 MS.gene29060:intron 35.0%
! TTCTTTTACTCTGCAAATGG+AGG + chr3.2:65788537-65788556 MS.gene29060:CDS 35.0%
!! AATCTTCCCACTTTGCTTTT+GGG - chr3.2:65790611-65790630 None:intergenic 35.0%
!! AGTTCAGTATGTTGTTTCCT+TGG + chr3.2:65788579-65788598 MS.gene29060:CDS 35.0%
!! AGTTCTAAGAGAATTGTCTG+TGG + chr3.2:65789522-65789541 MS.gene29060:CDS 35.0%
!! CTCATTAGCTTTGTTGTTCT+AGG - chr3.2:65791567-65791586 None:intergenic 35.0%
!! CTGCTATATTTTGTGCTGAT+TGG + chr3.2:65791947-65791966 MS.gene29060:intron 35.0%
!! GCCTTTACTATTGACTTAGA+GGG + chr3.2:65789839-65789858 MS.gene29060:intron 35.0%
!! GTTCTAAGAGAATTGTCTGT+GGG + chr3.2:65789523-65789542 MS.gene29060:CDS 35.0%
!! TGGCAGCAACATTTTTGAAA+GGG + chr3.2:65788972-65788991 MS.gene29060:intron 35.0%
!!! ACCTTACTTTGTTGCTGTTT+TGG - chr3.2:65790541-65790560 None:intergenic 35.0%
!!! TCCTCTATTTTTATCAGCTG+TGG + chr3.2:65787860-65787879 MS.gene29060:intron 35.0%
AACAAGGGAAGAGGTTTGAT+CGG + chr3.2:65788384-65788403 MS.gene29060:intron 40.0%
AACATACTGGGAATGACAAC+AGG - chr3.2:65788281-65788300 None:intergenic 40.0%
AACCCTAGTTGTTATGACTG+AGG + chr3.2:65789944-65789963 MS.gene29060:intron 40.0%
AAGTGGGAAGATTTGGCATT+TGG + chr3.2:65790618-65790637 MS.gene29060:intron 40.0%
AATTTGGCAGGCTTCTCATA+TGG + chr3.2:65788078-65788097 MS.gene29060:CDS 40.0%
ACATGGGATGGAAATGCAAT+TGG - chr3.2:65789346-65789365 None:intergenic 40.0%
ACCTGCCAGATATCTTATTG+GGG + chr3.2:65790342-65790361 MS.gene29060:intron 40.0%
ACTTAAGGCTGTATGCTTTC+AGG + chr3.2:65788721-65788740 MS.gene29060:intron 40.0%
AGGAGGATGCAAAAGTAGTT+AGG + chr3.2:65789964-65789983 MS.gene29060:intron 40.0%
AGTTAAAGAGCGGAGTGATA+AGG - chr3.2:65790074-65790093 None:intergenic 40.0%
ATAAATGGGGGGAATGTAAG+GGG + chr3.2:65790141-65790160 MS.gene29060:intron 40.0%
ATATTGCACTAGTGCATCCT+GGG - chr3.2:65789708-65789727 None:intergenic 40.0%
ATGGGCCAAGTCCAAATTTA+TGG + chr3.2:65790757-65790776 MS.gene29060:intron 40.0%
ATTACAAGACATGGTTGCAC+AGG + chr3.2:65792079-65792098 MS.gene29060:CDS 40.0%
CAACCTGCCAGATATCTTAT+TGG + chr3.2:65790340-65790359 MS.gene29060:intron 40.0%
CAATAAGATATCTGGCAGGT+TGG - chr3.2:65790342-65790361 None:intergenic 40.0%
CAATACTTTACCCAGTATGC+AGG - chr3.2:65789906-65789925 None:intergenic 40.0%
CTCCTCAGTCATAACAACTA+GGG - chr3.2:65789949-65789968 None:intergenic 40.0%
CTGAAGACAGACAGTTAGAT+GGG + chr3.2:65790707-65790726 MS.gene29060:intron 40.0%
CTGTGACAAATCATGGAAGT+TGG - chr3.2:65789102-65789121 None:intergenic 40.0%
CTTAAACGTCGGATACAGTA+AGG - chr3.2:65792000-65792019 None:intergenic 40.0%
CTTTCCCTAACCAAATTCAC+TGG - chr3.2:65788685-65788704 None:intergenic 40.0%
GAAAACATCAGGCAACCTAA+TGG - chr3.2:65788520-65788539 None:intergenic 40.0%
GAAACAGCCAAGCTTATGTT+TGG + chr3.2:65790729-65790748 MS.gene29060:intron 40.0%
GTCACCTAAGAACTTCAAAG+AGG + chr3.2:65791386-65791405 MS.gene29060:intron 40.0%
GTTAATTTCCGATATAGGGG+TGG + chr3.2:65791788-65791807 MS.gene29060:intron 40.0%
TAAAGAGACAGCAAGAGCTA+GGG + chr3.2:65790561-65790580 MS.gene29060:intron 40.0%
TATATTGCACTAGTGCATCC+TGG - chr3.2:65789709-65789728 None:intergenic 40.0%
TCATGTGTCGAAGTTAACTC+AGG - chr3.2:65788107-65788126 None:intergenic 40.0%
TCTCCCAGTGAATTTGGTTA+GGG + chr3.2:65788678-65788697 MS.gene29060:intron 40.0%
TCTGAAGACAGACAGTTAGA+TGG + chr3.2:65790706-65790725 MS.gene29060:intron 40.0%
TCTGTCTTGAATACGAACCA+AGG - chr3.2:65791247-65791266 None:intergenic 40.0%
TCTTCCCCCAATAAGATATC+TGG - chr3.2:65790350-65790369 None:intergenic 40.0%
TGGCTGATAATTCAGTACCA+CGG + chr3.2:65790481-65790500 MS.gene29060:intron 40.0%
TGTTAAGACTTCAGAGTGGT+TGG + chr3.2:65790984-65791003 MS.gene29060:intron 40.0%
TTAAAGAGACAGCAAGAGCT+AGG + chr3.2:65790560-65790579 MS.gene29060:intron 40.0%
TTTACTCTGCAAATGGAGGA+TGG + chr3.2:65788541-65788560 MS.gene29060:CDS 40.0%
! AACTTCAGGGTGTTCTTGAA+AGG + chr3.2:65790377-65790396 MS.gene29060:intron 40.0%
! AAGATAGCGCTGAAAGTAAC+AGG - chr3.2:65787688-65787707 None:intergenic 40.0%
! ACTTCAGGGTGTTCTTGAAA+GGG + chr3.2:65790378-65790397 MS.gene29060:intron 40.0%
! GGATAATGAAGTTTTACGCC+TGG - chr3.2:65789757-65789776 None:intergenic 40.0%
!! GGCCTTTACTATTGACTTAG+AGG + chr3.2:65789838-65789857 MS.gene29060:intron 40.0%
!! GTGAATTTGGTGATGGTGAA+AGG + chr3.2:65790178-65790197 MS.gene29060:intron 40.0%
!! GTTGGTGATATCCAGAACAA+GGG + chr3.2:65788369-65788388 MS.gene29060:CDS 40.0%
!! TCTCCCTCTTTGAAGTTCTT+AGG - chr3.2:65791393-65791412 None:intergenic 40.0%
!! TGAAAGGGAGCACTGATAAT+GGG + chr3.2:65790393-65790412 MS.gene29060:intron 40.0%
!! TGCAGTTTGTTGGTTCTATG+TGG + chr3.2:65787885-65787904 MS.gene29060:CDS 40.0%
!! TGTTGGTGATATCCAGAACA+AGG + chr3.2:65788368-65788387 MS.gene29060:CDS 40.0%
!! TTGAAAGGGAGCACTGATAA+TGG + chr3.2:65790392-65790411 MS.gene29060:intron 40.0%
!! TTTGTGCTGATTGGTTGTCA+AGG + chr3.2:65791956-65791975 MS.gene29060:intron 40.0%
AAAGACAAGGACCTGCATAC+TGG + chr3.2:65789892-65789911 MS.gene29060:intron 45.0%
AAGACAAGGACCTGCATACT+GGG + chr3.2:65789893-65789912 MS.gene29060:intron 45.0%
AAGACTTCAGAGTGGTTGGT+TGG + chr3.2:65790988-65791007 MS.gene29060:intron 45.0%
AATTCAGTACCACGGCAATG+AGG + chr3.2:65790489-65790508 MS.gene29060:intron 45.0%
ACCAAATTCACTGGGAGACT+AGG - chr3.2:65788676-65788695 None:intergenic 45.0%
ACTTGGCATAGGGGAAATAG+AGG - chr3.2:65789778-65789797 None:intergenic 45.0%
AGGGATGAAGTGGAAAGACT+GGG + chr3.2:65790580-65790599 MS.gene29060:intron 45.0%
AGGGATTTATAATAGGGCCC+AGG + chr3.2:65789688-65789707 MS.gene29060:intron 45.0%
ATGCGGTAACGATTCAGGTA+TGG + chr3.2:65792454-65792473 MS.gene29060:intron 45.0%
ATTCAGTACCACGGCAATGA+GGG + chr3.2:65790490-65790509 MS.gene29060:intron 45.0%
CAACTTGCAACCTCTGTTGA+GGG + chr3.2:65790419-65790438 MS.gene29060:intron 45.0%
CCAACACATACTGTACCAAC+CGG - chr3.2:65788354-65788373 None:intergenic 45.0%
CCAACCAATCCCTATAAGGT+TGG - chr3.2:65790117-65790136 None:intergenic 45.0%
CCTAGTTGTTATGACTGAGG+AGG + chr3.2:65789947-65789966 MS.gene29060:intron 45.0%
CCTCCTCAGTCATAACAACT+AGG - chr3.2:65789950-65789969 None:intergenic 45.0%
CCTGCCAGATATCTTATTGG+GGG + chr3.2:65790343-65790362 MS.gene29060:intron 45.0%
GACTTAGAGGGTGAGACATA+TGG + chr3.2:65789851-65789870 MS.gene29060:intron 45.0%
GAGAAGCCTGCCAAATTGAT+TGG - chr3.2:65788075-65788094 None:intergenic 45.0%
GATATCCAGAACAAGGGAAG+AGG + chr3.2:65788375-65788394 MS.gene29060:CDS 45.0%
GGAAGAAAGGGAGAACTTCA+GGG + chr3.2:65790364-65790383 MS.gene29060:intron 45.0%
GGACAAAGTAGTCGAACATG+CGG + chr3.2:65792437-65792456 MS.gene29060:CDS 45.0%
GGGGGAGAAGAATCATTAAG+TGG + chr3.2:65791049-65791068 MS.gene29060:intron 45.0%
GTAGTTGTAAACCCTCCTTG+TGG - chr3.2:65787619-65787638 None:intergenic 45.0%
GTCTCCCAGTGAATTTGGTT+AGG + chr3.2:65788677-65788696 MS.gene29060:intron 45.0%
GTTATTAGCCACCACAAGGA+GGG + chr3.2:65787605-65787624 MS.gene29060:CDS 45.0%
TAAATGGGGGGAATGTAAGG+GGG + chr3.2:65790142-65790161 MS.gene29060:intron 45.0%
TAGGGATGAAGTGGAAAGAC+TGG + chr3.2:65790579-65790598 MS.gene29060:intron 45.0%
TATACACTCATGGCATCCTC+AGG + chr3.2:65787651-65787670 MS.gene29060:CDS 45.0%
TCAAACCTCTTCCCTTGTTC+TGG - chr3.2:65788383-65788402 None:intergenic 45.0%
TCCTAGTCTCCCAGTGAATT+TGG + chr3.2:65788672-65788691 MS.gene29060:intron 45.0%
TCCTTGTCTTTGCGACCAAA+AGG - chr3.2:65789883-65789902 None:intergenic 45.0%
TGCAGGATTTCAAACCCTAG+AGG + chr3.2:65792050-65792069 MS.gene29060:intron 45.0%
TGTTATTAGCCACCACAAGG+AGG + chr3.2:65787604-65787623 MS.gene29060:CDS 45.0%
TGTTTCCTTGGCTATCACAG+AGG + chr3.2:65788591-65788610 MS.gene29060:CDS 45.0%
TTTGTAGGGTTTGACGTCCT+CGG + chr3.2:65792757-65792776 MS.gene29060:intron 45.0%
! AACTTTTGTGAGCTTCCGGT+TGG + chr3.2:65788336-65788355 MS.gene29060:CDS 45.0%
! AGCTGTGGATTGCAGTTTGT+TGG + chr3.2:65787875-65787894 MS.gene29060:intron 45.0%
! CAATCCCTATAAGGTTGGCT+GGG - chr3.2:65790112-65790131 None:intergenic 45.0%
! CACAAACTGGTCTCTGTCAT+TGG + chr3.2:65790680-65790699 MS.gene29060:intron 45.0%
! CAGCAACTTTTGTGAGCTTC+CGG + chr3.2:65788332-65788351 MS.gene29060:intron 45.0%
! CCAACCTTATAGGGATTGGT+TGG + chr3.2:65790114-65790133 MS.gene29060:intron 45.0%
! CGTTGTTATTAGCCACCACA+AGG + chr3.2:65787601-65787620 MS.gene29060:CDS 45.0%
! GACATATGGCTGTTGCCTTT+TGG + chr3.2:65789865-65789884 MS.gene29060:intron 45.0%
! GACTAGCCCAAAAGCAAAGT+GGG + chr3.2:65790602-65790621 MS.gene29060:intron 45.0%
! TCGGGATATTTGTTGGCAGT+CGG + chr3.2:65792776-65792795 MS.gene29060:CDS 45.0%
!! AGGGAGCTTGAGAGTGTTAT+TGG - chr3.2:65787952-65787971 None:intergenic 45.0%
!! ATAATGGGCCAGACACAAAC+TGG + chr3.2:65790667-65790686 MS.gene29060:intron 45.0%
AAATGGGGGGAATGTAAGGG+GGG + chr3.2:65790143-65790162 MS.gene29060:intron 50.0%
AACCACCCAGCCAACCTTAT+AGG + chr3.2:65790104-65790123 MS.gene29060:intron 50.0%
AAGAGCGGAGTGATAAGGAG+AGG - chr3.2:65790069-65790088 None:intergenic 50.0%
AATGCCTGGGAGTCTCCATT+AGG + chr3.2:65788502-65788521 MS.gene29060:CDS 50.0%
ACAGGTTGCGATCTAACCTG+AGG - chr3.2:65787670-65787689 None:intergenic 50.0%
ACCACCCAGCCAACCTTATA+GGG + chr3.2:65790105-65790124 MS.gene29060:intron 50.0%
AGAGCGGAGTGATAAGGAGA+GGG - chr3.2:65790068-65790087 None:intergenic 50.0%
AGCAAGAGCTAGGGATGAAG+TGG + chr3.2:65790570-65790589 MS.gene29060:intron 50.0%
AGGCATTCTTTGACCGACCT+GGG - chr3.2:65788489-65788508 None:intergenic 50.0%
AGGTCGGTCAAAGAATGCCT+GGG + chr3.2:65788489-65788508 MS.gene29060:intron 50.0%
ATCAATGCACGGCAATCCCT+GGG - chr3.2:65789178-65789197 None:intergenic 50.0%
CACATTGGCCACCCCTATAT+CGG - chr3.2:65791799-65791818 None:intergenic 50.0%
CCAATCCCTATAAGGTTGGC+TGG - chr3.2:65790113-65790132 None:intergenic 50.0%
CCAGCCAACCTTATAGGGAT+TGG + chr3.2:65790110-65790129 MS.gene29060:intron 50.0%
CCCCCAATAAGATATCTGGC+AGG - chr3.2:65790346-65790365 None:intergenic 50.0%
CGAACATGCGGTAACGATTC+AGG + chr3.2:65792449-65792468 MS.gene29060:CDS 50.0%
CTCTGCAAATGGAGGATGGA+CGG + chr3.2:65788545-65788564 MS.gene29060:CDS 50.0%
CTCTGTTGAGGGAGCTGAAA+GGG + chr3.2:65790430-65790449 MS.gene29060:intron 50.0%
GACAGAGACCAGTTTGTGTC+TGG - chr3.2:65790678-65790697 None:intergenic 50.0%
GACGTCCTCGGGATATTTGT+TGG + chr3.2:65792769-65792788 MS.gene29060:CDS 50.0%
GACTGCCAACAAATATCCCG+AGG - chr3.2:65792777-65792796 None:intergenic 50.0%
GAGAGCTTAAACTCCCAGGT+CGG + chr3.2:65788473-65788492 MS.gene29060:intron 50.0%
GATTGCCTCTGTGATAGCCA+AGG - chr3.2:65788599-65788618 None:intergenic 50.0%
GCAACTTGCAACCTCTGTTG+AGG + chr3.2:65790418-65790437 MS.gene29060:intron 50.0%
GGAGTGGGAGAGTTAAAGAG+CGG - chr3.2:65790084-65790103 None:intergenic 50.0%
GGCTATCACAGAGGCAATCA+AGG + chr3.2:65788600-65788619 MS.gene29060:CDS 50.0%
GGGAAGAAAGGGAGAACTTC+AGG + chr3.2:65790363-65790382 MS.gene29060:intron 50.0%
GTTGTAAACCCTCCTTGTGG+TGG - chr3.2:65787616-65787635 None:intergenic 50.0%
TAACAACCGCAGTGCTCGTA+TGG + chr3.2:65790458-65790477 MS.gene29060:intron 50.0%
TCTGCAAATGGAGGATGGAC+GGG + chr3.2:65788546-65788565 MS.gene29060:CDS 50.0%
TCTGTTGAGGGAGCTGAAAG+GGG + chr3.2:65790431-65790450 MS.gene29060:intron 50.0%
TGACTGAGAATAGGAGAGCG+AGG - chr3.2:65791121-65791140 None:intergenic 50.0%
TGCACAGGCTTTCTGTACCT+TGG + chr3.2:65791227-65791246 MS.gene29060:intron 50.0%
TTCAGTACCACGGCAATGAG+GGG + chr3.2:65790491-65790510 MS.gene29060:intron 50.0%
TTGTAGGGTTTGACGTCCTC+GGG + chr3.2:65792758-65792777 MS.gene29060:intron 50.0%
! AAGAGCATAGTGCACTGCAC+AGG + chr3.2:65791212-65791231 MS.gene29060:intron 50.0%
! CCGGTTGGTACAGTATGTGT+TGG + chr3.2:65788351-65788370 MS.gene29060:CDS 50.0%
! CTCTGAGAGCTTAAACTCCC+AGG + chr3.2:65788469-65788488 MS.gene29060:intron 50.0%
! GCCTTTTGGTCGCAAAGACA+AGG + chr3.2:65789879-65789898 MS.gene29060:intron 50.0%
! GGCAGGTTGGACCAATTGTT+GGG - chr3.2:65790329-65790348 None:intergenic 50.0%
! TATAAGGTTGGCTGGGTGGT+TGG - chr3.2:65790105-65790124 None:intergenic 50.0%
! TGGCAGGTTGGACCAATTGT+TGG - chr3.2:65790330-65790349 None:intergenic 50.0%
!! GGACTAGCCCAAAAGCAAAG+TGG + chr3.2:65790601-65790620 MS.gene29060:intron 50.0%
ATGTGTGAGCTCCACCCTGA+TGG + chr3.2:65792812-65792831 MS.gene29060:CDS 55.0%
CAGGCATTCTTTGACCGACC+TGG - chr3.2:65788490-65788509 None:intergenic 55.0%
CAGGGTGGAGCTCACACATT+TGG - chr3.2:65792811-65792830 None:intergenic 55.0%
CAGGTCGGTCAAAGAATGCC+TGG + chr3.2:65788488-65788507 MS.gene29060:intron 55.0%
CATCAATGCACGGCAATCCC+TGG - chr3.2:65789179-65789198 None:intergenic 55.0%
CATCTTACCCCTCATTGCCG+TGG - chr3.2:65790501-65790520 None:intergenic 55.0%
CCTCTGTTGAGGGAGCTGAA+AGG + chr3.2:65790429-65790448 MS.gene29060:intron 55.0%
CCTTTCAGCTCCCTCAACAG+AGG - chr3.2:65790432-65790451 None:intergenic 55.0%
GCAACCTAATGGAGACTCCC+AGG - chr3.2:65788509-65788528 None:intergenic 55.0%
! TCCCTATAAGGTTGGCTGGG+TGG - chr3.2:65790109-65790128 None:intergenic 55.0%
CAACCGCAGTGCTCGTATGG+TGG + chr3.2:65790461-65790480 MS.gene29060:intron 60.0%
GTTGGCTGGGTGGTTGGAGT+GGG - chr3.2:65790099-65790118 None:intergenic 60.0%
! CAGCCACCATACGAGCACTG+CGG - chr3.2:65790467-65790486 None:intergenic 60.0%
GGGGGGAATGTAAGGGGGGA+AGG + chr3.2:65790147-65790166 MS.gene29060:intron 65.0%
! GGTTGGCTGGGTGGTTGGAG+TGG - chr3.2:65790100-65790119 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 65787570 65792840 65787570 ID=MS.gene29060
chr3.2 mRNA 65787570 65792840 65787570 ID=MS.gene29060.t1;Parent=MS.gene29060
chr3.2 exon 65787570 65787672 65787570 ID=MS.gene29060.t1.exon1;Parent=MS.gene29060.t1
chr3.2 CDS 65787570 65787672 65787570 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65787877 65788138 65787877 ID=MS.gene29060.t1.exon2;Parent=MS.gene29060.t1
chr3.2 CDS 65787877 65788138 65787877 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65788335 65788396 65788335 ID=MS.gene29060.t1.exon3;Parent=MS.gene29060.t1
chr3.2 CDS 65788335 65788396 65788335 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65788491 65788639 65788491 ID=MS.gene29060.t1.exon4;Parent=MS.gene29060.t1
chr3.2 CDS 65788491 65788639 65788491 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65789180 65789300 65789180 ID=MS.gene29060.t1.exon5;Parent=MS.gene29060.t1
chr3.2 CDS 65789180 65789300 65789180 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65789473 65789628 65789473 ID=MS.gene29060.t1.exon6;Parent=MS.gene29060.t1
chr3.2 CDS 65789473 65789628 65789473 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65792055 65792100 65792055 ID=MS.gene29060.t1.exon7;Parent=MS.gene29060.t1
chr3.2 CDS 65792055 65792100 65792055 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65792404 65792470 65792404 ID=MS.gene29060.t1.exon8;Parent=MS.gene29060.t1
chr3.2 CDS 65792404 65792470 65792404 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
chr3.2 exon 65792764 65792840 65792764 ID=MS.gene29060.t1.exon9;Parent=MS.gene29060.t1
chr3.2 CDS 65792764 65792840 65792764 ID=cds.MS.gene29060.t1;Parent=MS.gene29060.t1
Gene Sequence

>MS.gene29060

ATGGTATTACTGAACTCTGCGTCAACAGCATCGTTGTTATTAGCCACCACAAGGAGGGTTTACAACTACCATCTTTATACATATACACTCATGGCATCCTCAGGTTAGATCGCAACCTGTTACTTTCAGCGCTATCTTTCTCTCAGATACCATAGATTGTTAGCTGAACAACTGGGTAGACTAGTTAAATTTTAAAAATATTAGTTACTTAATTAATTTCTATAATGAATTAAATTCATGGTTATTGAACAATTGGAGTAAAGTTTGAATCTTGATGATGAAATATCTATTCCTCTATTTTTATCAGCTGTGGATTGCAGTTTGTTGGTTCTATGTGGCAAATCACTCGCAGAGAATGAAACTGCTATAGCTATTAAGACCAATAACACTCTCAAGCTCCCTGACAAGAAAGAACTATCCATTATTTTACATTCAGAGTTCAATAAAAGTGTTATACAACGACAATCCTTCCAATTTAGTTCATTCATGAATTCTCTTTCTACCAATCAATTTGGCAGGCTTCTCATATGGTCTCCTGAGTTAACTTCGACACATGATGTCGTTTCACAGTATGTCTTGCACCTTTTTCTGTTTTTCGTGTTTTAGATTATGCATTGGTTGGACCCATAATCAGATCGTGAAAAATTATTATGTATCCAAACTTTCTTGTGCTTAAGATGATATCTTACCAAAAAAAAATTTTATTTACCTGTTGTCATTCCCAGTATGTTTAAGATCTTTTTTCAAATATATATTCTCATGCAGCAACTTTTGTGAGCTTCCGGTTGGTACAGTATGTGTTGGTGATATCCAGAACAAGGGAAGAGGTTTGATCGGACATTTAGTTTTACCATGATTCTGTCCCTTTTAAGTTATATTTTAAGTTTATATAAAAGTTTCTCTGAGAGCTTAAACTCCCAGGTCGGTCAAAGAATGCCTGGGAGTCTCCATTAGGTTGCCTGATGTTTTCTTTTACTCTGCAAATGGAGGATGGACGGGTCGTTCCTTTAGTTCAGTATGTTGTTTCCTTGGCTATCACAGAGGCAATCAAGGATATCTGTGACAAAAATGTAAGCACTTGGTTTTAAATTACTGGCTATATTCCTAGTCTCCCAGTGAATTTGGTTAGGGAAAGTAGTATTAAATTTAACACTTAAGGCTGTATGCTTTCAGGCAATATAAGACTATAAGTGTGTACAAGTTTAATATTCTGGTAAAAGTAATGGTGCTTTTTTGTGAATATGGCCAAAACTGTGAAGTTGTATGCAGTATTAAGAATGCTGTTATTTGAAAGAATTTCATTTTTTATCTACTAAAATGCAAACTTGGTTGGTCAGTCTTGCTGTTTAACTGCTAAGATATTCAGAATGTGAGTTTAAACCTATTAAGCATGAACGACAAATGGCAGCAACATTTTTGAAAGGGAGAAGACAACTCTCATCATCATATGGAGTTTCAAAAGCTGAATGGTTTTTGGTTGTCATTTTAAAATAATAAATGCTTGCTTTGTGTTTGGTCGATTTTCTGAACCAACTTCCATGATTTGTCACAGTATCTTATTTTCTAGTTGTTTGAGCTCCTGTGCATTTTTGTAACAATTTTCATCCCAGGGATTGCCGTGCATTGATGTTAAAATCAAGTGGCCAAATGATCTGTACTTAAACGGATTTAAAGTTGGAGGCATTCTTTGCACCTCTACATATAAATCAAAGAAGTTCAATATCAGTGCAGGTAATAAGGTATTCTTGGATAGCTAATTTTATTCAATGATGACCAATTGCATTTCCATCCCATGTATTATACTACTAGCTAAACCAGTATATTAAATCCTGTTCACTGCAGAGAATTTAATTTATTTTAATGTCATTTTGGTGAGGTCATAACAAATTCCATGATTTCACAGGAATAGGATTGAATGTCAATAATGAGAAGCCAACAACATCCTTAAATACAGTTCTAAGAGAATTGTCTGTGGGAGCTTACCAATTTCAAAGAGAAGATGTTCTGGCAGCCTTTTTTAACAAATTTGAGAAGTTTTTTGATCTATTTTTGAATCAAGGTACTATTCTAATTATCTCATGAGATCGAACCAAATGTATATTTTGCGGAAAGGGTAAAAGGGATTTATAATAGGGCCCAGGATGCACTAGTGCAATATATAATTGAAAATTGCTTGCTAATTTACCAGGCGTAAAACTTCATTATCCTCTATTTCCCCTATGCCAAGTTTAATTCTTTTCTTTTTATAGTTGTGCTATGTCTTGTAATGGCCTTTACTATTGACTTAGAGGGTGAGACATATGGCTGTTGCCTTTTGGTCGCAAAGACAAGGACCTGCATACTGGGTAAAGTATTGTATATTTGATCCTCTATAAACCCTAGTTGTTATGACTGAGGAGGATGCAAAAGTAGTTAGGAAAGTTAGGGTAGTTAGGTTTTGTTTTTTGAATAACAAATCTTAGTATAGTTTGTATTTTGTTAGGATAGGGATTGAACCCTCTCCTTATCACTCCGCTCTTTAACTCTCCCACTCCAACCACCCAGCCAACCTTATAGGGATTGGTTGGTTAAATAAATGGGGGGAATGTAAGGGGGGAAGGATCATCATGTGAATTTGGTGATGGTGAAAGGAGAAATCCTTTGTACATTGGAAACTGTTGGAGAAGTCTCTCTTCTCTTTCCTCTATGATTCATTCAATAACGTTGTGCTTTTTTTTTTTCTTTCTATCAATTTTCTCTTTCGATTTCTCTTGTTTCCCAACAATTGGTCCAACCTGCCAGATATCTTATTGGGGGAAGAAAGGGAGAACTTCAGGGTGTTCTTGAAAGGGAGCACTGATAATGGGTTGCAACTTGCAACCTCTGTTGAGGGAGCTGAAAGGGGAGCGTAACAACCGCAGTGCTCGTATGGTGGCTGATAATTCAGTACCACGGCAATGAGGGGTAAGATGTGTGCTATTATGTTGTTCCAAAACAGCAACAAAGTAAGGTTAAAGAGACAGCAAGAGCTAGGGATGAAGTGGAAAGACTGGGACTAGCCCAAAAGCAAAGTGGGAAGATTTGGCATTTGGCAAAGTGAGTCAAACTGTAAGTAATCATAATGGGCCAGACACAAACTGGTCTCTGTCATTGGACATCTGAAGACAGACAGTTAGATGGGAAACAGCCAAGCTTATGTTTGGATTTAATGGGCCAAGTCCAAATTTATGGAATTCAAAGAGTGTCCCAACAATTCGTCTACAGTTAGTGCCTCAACATATAGTAGAAAGAATGTGACAAAAACATCTATGATAATTGATAAGTGATCATCGACGTTTTTGTCTCATGCAACTATATGTTTGATCACTCAATGGCAGCCATTAAAATTGGACCTTATAGGTGCAAAAATAGTTCGGGAAGTTAGAGCAGTTTGTTTGTTAAGACTTCAGAGTGGTTGGTTGGTTAGTTAGTTAGTTAGTTAAAAAATGGGGAGAAATATAGGGGGAGAAGAATCATTAAGTGGATTTGATTGTTGTTATGAACGGAGAAATACTTTGTGAAGAAGAAAACCTCGCTCTCCTATTCTCAGTCATCTATTCAATAAAGTTGTGCTCTTTCTATAAATTTTACCTTCCAATATTTTGGGCTCTTAACAATGTTCGTAAGAGCATAGTGCACTGCACAGGCTTTCTGTACCTTGGTTCGTATTCAAGACAGAGAAGAAGAAAAATCACTCACTTGGCTTTTAAGATCAGAGTCACGTGATGCTTTCCCTTACCCCTTGTTATTCTTTTAGTAGTCTTATTTTTTCAATTATTGGCCTTCTCTTTTTTTTTTGTCACCTAAGAACTTCAAAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGTCCATTTTAATTCTCTAAATATGTGAATGTCCTTAGCTTTGTCATAAGTGTATAGATATGCATCAAATTCAATGTTAATTGTTGCCCTCAAATATTTAAATTGGTTCTTGAAGTGACATCAAATGGTTCCTAGAACAACAAAGCTAATGAGATAGATTCTCTCATGTTAGAGTTTCATATGACCTTGTTATTCATTTGAAAATTTGATATCTGTTATAGAAATTAAAAAAGTTGGATCCTTTAAACTTTTCTGAAAGTCTATACAGAAATTTAGAAATATACACATAAAAGTTTTACAGGTGAGAATTTCTTCCCAAAACTAATTGCTTTTAATTATTATGAAAGAACCATAGTTAATTTCCGATATAGGGGTGGCCAATGTGATGTTGTATACATCTTTAGAAGACCATAATTGACATTTACCAAAAATAAGAAGTAAACAACCAAAGTGTTATGTTTTTAGTTAAATATTTATGGTAAGTTGTTCCCGAACATCCATATTTTCTTAAACCTGCTATATTTTGTGCTGATTGGTTGTCAAGGACATACAATTATACTCTACCTTACTGTATCCGACGTTTAAGAAAATTTGGAGCTTAACCTATTATGTTAAATGCAGGATTTCAAACCCTAGAGGAACTATATTACAAGACATGGTTGCACAGGTGACTTGAATTTCAAGTATTATTACTCTGTTTATCCTCTTTATCATGTGCTTTTATTCTTGTACTTTTACTTCAATCATGAAGGAAACGATTCGGATATACCCAACATGTTTTCACAATATTAATTACTGAACTCGGATTCACTCGTTTTTGTTAGCAGTTGAACTGAAGTTTAAAACATAATGTTGTTTTCAACATCCTAGTTATGCTTTCATTTGGAAAAAACAAAGCATGTTATTGCATACTAGTATACGTGGAATAGTTTATTTGTACATTTGTTTATACATTCAAAATGTCATGCAGTGGACAGAGAGTTATTGTACAAGAAAAGAACGAGGACAAAGTAGTCGAACATGCGGTAACGATTCAGGTATGGTCGACAGAAATAGTCTCCTGATTTACAAAATTATCTGAATTGAGCGTTGATCAAGTCCATTGATGTGAAATTTGCTGTATGAAAGAACAGACAATTTTTGCTGTTGATTATTATTGATTATGAAGTTAGAAATTTTGAAAACTGAAATTGTTATATCAAATCAAAGAATGTAATGCATGTAATCTGCTAGCCACATTCAATGTTTATATCGATAGTTTAAATTTGATTGTCAACTTGACATCATTACTGGAAATAATTATTATATCGATAATTGCTTTTATTTGTAGGGTTTGACGTCCTCGGGATATTTGTTGGCAGTCGGTGATGACAACCAAATGTGTGAGCTCCACCCTGATGGTAATAG

Protein sequence

>MS.gene29060.t1

MVLLNSASTASLLLATTRRVYNYHLYTYTLMASSAVDCSLLVLCGKSLAENETAIAIKTNNTLKLPDKKELSIILHSEFNKSVIQRQSFQFSSFMNSLSTNQFGRLLIWSPELTSTHDVVSHNFCELPVGTVCVGDIQNKGRGRSKNAWESPLGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAIKDICDKNGLPCIDVKIKWPNDLYLNGFKVGGILCTSTYKSKKFNISAGIGLNVNNEKPTTSLNTVLRELSVGAYQFQREDVLAAFFNKFEKFFDLFLNQGFQTLEELYYKTWLHSGQRVIVQEKNEDKVVEHAVTIQGLTSSGYLLAVGDDNQMCELHPDGN