Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031873.t1 | XP_013460797.1 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 6.90E-135 | 490 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031873.t1 | Q94AK4 | 53.8 | 78 | 34 | 2 | 164 | 239 | 127 | 204 | 5.3e-19 | 96.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031873.t1 | A0A072UZH7 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 5.0e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95889 | MS.gene031873 | PPI |
| MS.gene040151 | MS.gene031873 | PPI |
| MS.gene031873 | MS.gene93783 | PPI |
| MS.gene62620 | MS.gene031873 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031873.t1 | MTR_3g072630 | 96.234 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 5.79e-169 | 469 |
| MS.gene031873.t1 | MTR_3g072630 | 96.234 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 7.34e-169 | 469 |
| MS.gene031873.t1 | MTR_5g088720 | 29.555 | 247 | 145 | 6 | 20 | 256 | 7 | 234 | 2.50e-24 | 99.8 |
| MS.gene031873.t1 | MTR_5g088720 | 29.555 | 247 | 145 | 6 | 20 | 256 | 12 | 239 | 2.55e-24 | 99.8 |
| MS.gene031873.t1 | MTR_5g088720 | 29.555 | 247 | 145 | 6 | 20 | 256 | 53 | 280 | 4.88e-24 | 99.4 |
| MS.gene031873.t1 | MTR_1g051105 | 50.667 | 75 | 37 | 0 | 169 | 243 | 107 | 181 | 1.08e-21 | 91.3 |
| MS.gene031873.t1 | MTR_2g007340 | 30.400 | 250 | 132 | 9 | 1 | 239 | 1 | 219 | 3.24e-19 | 85.5 |
| MS.gene031873.t1 | MTR_0067s0100 | 26.872 | 227 | 133 | 6 | 20 | 239 | 8 | 208 | 4.75e-17 | 79.0 |
| MS.gene031873.t1 | MTR_3g083480 | 28.044 | 271 | 128 | 11 | 20 | 243 | 9 | 259 | 5.92e-15 | 73.9 |
| MS.gene031873.t1 | MTR_6g079660 | 33.981 | 103 | 58 | 4 | 156 | 255 | 172 | 267 | 3.99e-13 | 68.6 |
| MS.gene031873.t1 | MTR_2g097620 | 24.444 | 225 | 134 | 4 | 20 | 239 | 14 | 207 | 1.06e-12 | 67.4 |
| MS.gene031873.t1 | MTR_1g114320 | 43.662 | 71 | 37 | 2 | 172 | 239 | 142 | 212 | 3.37e-12 | 65.5 |
| MS.gene031873.t1 | MTR_3g068005 | 24.891 | 229 | 142 | 7 | 20 | 239 | 7 | 214 | 1.24e-11 | 64.3 |
| MS.gene031873.t1 | MTR_4g064570 | 25.333 | 225 | 126 | 5 | 20 | 239 | 12 | 199 | 3.66e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031873.t1 | AT1G60360 | 40.562 | 249 | 131 | 9 | 1 | 239 | 1 | 242 | 3.84e-39 | 139 |
| MS.gene031873.t1 | AT3G56580 | 30.380 | 237 | 108 | 8 | 20 | 239 | 8 | 204 | 9.56e-25 | 100 |
| MS.gene031873.t1 | AT3G56580 | 30.380 | 237 | 108 | 8 | 20 | 239 | 8 | 204 | 9.56e-25 | 100 |
| MS.gene031873.t1 | AT3G56580 | 30.380 | 237 | 108 | 8 | 20 | 239 | 8 | 204 | 9.56e-25 | 100 |
| MS.gene031873.t1 | AT2G40830 | 29.956 | 227 | 126 | 10 | 20 | 239 | 8 | 208 | 1.71e-21 | 92.0 |
| MS.gene031873.t1 | AT2G40830 | 29.956 | 227 | 126 | 10 | 20 | 239 | 8 | 208 | 1.71e-21 | 92.0 |
| MS.gene031873.t1 | AT2G40830 | 29.956 | 227 | 126 | 10 | 20 | 239 | 8 | 208 | 1.71e-21 | 92.0 |
| MS.gene031873.t1 | AT2G40830 | 29.956 | 227 | 126 | 10 | 20 | 239 | 8 | 208 | 1.71e-21 | 92.0 |
| MS.gene031873.t1 | AT3G19950 | 30.472 | 233 | 134 | 9 | 18 | 239 | 77 | 292 | 4.03e-20 | 89.0 |
| MS.gene031873.t1 | AT3G19950 | 30.472 | 233 | 134 | 9 | 18 | 239 | 77 | 292 | 4.03e-20 | 89.0 |
| MS.gene031873.t1 | AT3G19950 | 30.472 | 233 | 134 | 9 | 18 | 239 | 19 | 234 | 4.53e-20 | 88.2 |
| MS.gene031873.t1 | AT1G55530 | 26.724 | 232 | 134 | 8 | 20 | 243 | 9 | 212 | 3.76e-15 | 74.3 |
| MS.gene031873.t1 | AT1G55530 | 26.210 | 248 | 148 | 9 | 20 | 243 | 9 | 245 | 6.90e-15 | 73.6 |
| MS.gene031873.t1 | AT1G55530 | 26.210 | 248 | 148 | 9 | 20 | 243 | 9 | 245 | 6.90e-15 | 73.6 |
| MS.gene031873.t1 | AT5G56340 | 38.144 | 97 | 53 | 2 | 152 | 246 | 193 | 284 | 1.50e-13 | 70.1 |
| MS.gene031873.t1 | AT3G10815 | 45.161 | 62 | 33 | 1 | 179 | 239 | 78 | 139 | 7.04e-12 | 63.2 |
Find 83 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCGTCGGGTTTGGGTTTC+TGG | 0.014633 | 3.3:+62972148 | None:intergenic |
| CATGACGTGGGCGTCGGGTT+TGG | 0.229750 | 3.3:+62972140 | None:intergenic |
| GCTTCTAGTAAACGCGCTTC+TGG | 0.237677 | 3.3:+62972211 | None:intergenic |
| ATGACGTGGGCGTCGGGTTT+GGG | 0.249529 | 3.3:+62972141 | None:intergenic |
| ATTGCGTTTATACCTCTTTC+CGG | 0.279704 | 3.3:+62971827 | None:intergenic |
| CTGGTTCTGCTTCAAGAATA+AGG | 0.284347 | 3.3:-62971472 | None:intergenic |
| GTTCAGGTTCAGTTTGTGTT+TGG | 0.298514 | 3.3:+62972068 | None:intergenic |
| TGTCAAGAAGAGTTTGAAAT+TGG | 0.316838 | 3.3:-62971749 | MS.gene031873:CDS |
| CGGTGTTGGATCCCGGGTTC+AGG | 0.338023 | 3.3:+62972052 | None:intergenic |
| GCATCAACGCCGCGTGGAAT+TGG | 0.345689 | 3.3:+62971932 | None:intergenic |
| TGTTTATTTCACATATGAAT+TGG | 0.346384 | 3.3:+62972281 | None:intergenic |
| TTCAGGTTCAGTTTGTGTTT+GGG | 0.363394 | 3.3:+62972069 | None:intergenic |
| CCAGAACCATTGTCTCTTTG+AGG | 0.367252 | 3.3:+62971491 | None:intergenic |
| AAACGTGTTTGAATCGGAAT+TGG | 0.369421 | 3.3:+62971988 | None:intergenic |
| TCAAACTCTTCTTGACAAAC+AGG | 0.384860 | 3.3:+62971755 | None:intergenic |
| CTTCTAGTAAACGCGCTTCT+GGG | 0.389670 | 3.3:+62972212 | None:intergenic |
| TGGTTCTGCTTCAAGAATAA+GGG | 0.395926 | 3.3:-62971471 | None:intergenic |
| CCTCAAAGAGACAATGGTTC+TGG | 0.410933 | 3.3:-62971491 | MS.gene031873:CDS |
| TGGTTGTTTATTCTCTCTCT+TGG | 0.415418 | 3.3:+62972403 | None:intergenic |
| CCTCTTTCCGGCACCGGTGG+TGG | 0.418881 | 3.3:+62971839 | None:intergenic |
| CGATTCAAACACGTTTCAAC+CGG | 0.424278 | 3.3:-62971981 | MS.gene031873:CDS |
| GTTCAGTTTGTGTTTGGGTT+GGG | 0.434037 | 3.3:+62972074 | None:intergenic |
| ATCAAGTCAGAGGAGTTATA+TGG | 0.436014 | 3.3:+62972322 | None:intergenic |
| TTGTTTATTCTCTCTCTTGG+AGG | 0.443470 | 3.3:+62972406 | None:intergenic |
| TCCAACACCGTCCACGTACA+TGG | 0.446385 | 3.3:-62972039 | MS.gene031873:CDS |
| GGTTCAGTTTGTGTTTGGGT+TGG | 0.447683 | 3.3:+62972073 | None:intergenic |
| CAAGAAGAGTTTGAAATTGG+TGG | 0.457438 | 3.3:-62971746 | MS.gene031873:CDS |
| ACGTGGACGGTGTTGGATCC+CGG | 0.457633 | 3.3:+62972045 | None:intergenic |
| CGTGGACGGTGTTGGATCCC+GGG | 0.458200 | 3.3:+62972046 | None:intergenic |
| TTTATACCTCTTTCCGGCAC+CGG | 0.460655 | 3.3:+62971833 | None:intergenic |
| GTTCCAGTGCGCCGTCGGAC+AGG | 0.464229 | 3.3:-62972106 | MS.gene031873:CDS |
| TTGAAATTGGTGGTGAAGCG+AGG | 0.464387 | 3.3:-62971736 | MS.gene031873:CDS |
| TCTCCTGTCCGACGGCGCAC+TGG | 0.471289 | 3.3:+62972103 | None:intergenic |
| TGTGGCATGACGTGGGCGTC+GGG | 0.472184 | 3.3:+62972135 | None:intergenic |
| TGCGGAAGGTGCAGTTGCAT+TGG | 0.474464 | 3.3:+62972350 | None:intergenic |
| GCAGGGTCCACCACCGGTGC+CGG | 0.475669 | 3.3:-62971846 | MS.gene031873:CDS |
| GTGTGGCATGACGTGGGCGT+CGG | 0.475763 | 3.3:+62972134 | None:intergenic |
| CCACCACCGGTGCCGGAAAG+AGG | 0.484120 | 3.3:-62971839 | MS.gene031873:CDS |
| CGGTTGAAACGTGTTTGAAT+CGG | 0.491561 | 3.3:+62971982 | None:intergenic |
| ACACAAACTGAACCTGAACC+CGG | 0.494798 | 3.3:-62972064 | MS.gene031873:CDS |
| GCACCGGTGGTGGACCCTGC+CGG | 0.504051 | 3.3:+62971849 | None:intergenic |
| GTGAAGTCTACGACGAGTCT+TGG | 0.504527 | 3.3:+62972250 | None:intergenic |
| TTCTGGATTAAAGCGACGGA+TGG | 0.505101 | 3.3:+62972165 | None:intergenic |
| ACCAAATAACAGAAAATGAC+CGG | 0.519700 | 3.3:-62971868 | MS.gene031873:CDS |
| ATTGGTCCTTGTCGTCCACC+TGG | 0.519875 | 3.3:+62971950 | None:intergenic |
| GGATTAAAGCGACGGATGGG+TGG | 0.522942 | 3.3:+62972169 | None:intergenic |
| TCTACGACGAGTCTTGGTCT+TGG | 0.525811 | 3.3:+62972256 | None:intergenic |
| TTTGAATCGGAATTGGAAGA+AGG | 0.528606 | 3.3:+62971995 | None:intergenic |
| AGTAAACGCGCTTCTGGGGA+AGG | 0.533512 | 3.3:+62972217 | None:intergenic |
| AATAACAGAAAATGACCGGC+AGG | 0.549894 | 3.3:-62971864 | MS.gene031873:CDS |
| GATGGGTGGGTCAAGCATGA+TGG | 0.552583 | 3.3:+62972183 | None:intergenic |
| TATGAATTGGCCAAAGCAGT+GGG | 0.559128 | 3.3:+62972294 | None:intergenic |
| TGAAATTGGTGGTGAAGCGA+GGG | 0.569510 | 3.3:-62971735 | MS.gene031873:CDS |
| TGACCGGCAGGGTCCACCAC+CGG | 0.573125 | 3.3:-62971852 | MS.gene031873:CDS |
| ACTTCTTGTGTGGCATGACG+TGG | 0.573297 | 3.3:+62972127 | None:intergenic |
| GCGCACTGGAACTTCTTGTG+TGG | 0.576661 | 3.3:+62972117 | None:intergenic |
| GGGTTTCTGGATTAAAGCGA+CGG | 0.580123 | 3.3:+62972161 | None:intergenic |
| ATACCTCTTTCCGGCACCGG+TGG | 0.585012 | 3.3:+62971836 | None:intergenic |
| AAGAAGTTCCAGTGCGCCGT+CGG | 0.587134 | 3.3:-62972111 | MS.gene031873:CDS |
| TTCTAGTAAACGCGCTTCTG+GGG | 0.588626 | 3.3:+62972213 | None:intergenic |
| TCTGGATTAAAGCGACGGAT+GGG | 0.589400 | 3.3:+62972166 | None:intergenic |
| GATTAAAGCGACGGATGGGT+GGG | 0.596266 | 3.3:+62972170 | None:intergenic |
| AGAGTTGAAAGTTTCTACGT+TGG | 0.598580 | 3.3:+62972383 | None:intergenic |
| CCCATGTACGTGGACGGTGT+TGG | 0.598601 | 3.3:+62972038 | None:intergenic |
| GGTGATGATCTCCTGTCCGA+CGG | 0.599729 | 3.3:+62972095 | None:intergenic |
| GAATTGGAAGAAGGATCCAC+AGG | 0.610104 | 3.3:+62972004 | None:intergenic |
| ATATGAATTGGCCAAAGCAG+TGG | 0.610337 | 3.3:+62972293 | None:intergenic |
| GTTATATGGTGCAATGCGGA+AGG | 0.611074 | 3.3:+62972336 | None:intergenic |
| TCTATTAGTTCGTTAAAACC+CGG | 0.613916 | 3.3:+62971890 | None:intergenic |
| CACAAACTGAACCTGAACCC+GGG | 0.615987 | 3.3:-62972063 | MS.gene031873:CDS |
| TGAATTGGCCAAAGCAGTGG+GGG | 0.617717 | 3.3:+62972296 | None:intergenic |
| GTTCATCCTCAAAGAGACAA+TGG | 0.630874 | 3.3:-62971497 | MS.gene031873:CDS |
| ATGGGTCATTCTACAACCTG+TGG | 0.633466 | 3.3:-62972020 | MS.gene031873:CDS |
| TCTCTTGCATCAACGCCGCG+TGG | 0.635767 | 3.3:+62971926 | None:intergenic |
| TTCTGGGGAAGGATCATGTG+CGG | 0.637567 | 3.3:+62972228 | None:intergenic |
| CCAACACCGTCCACGTACAT+GGG | 0.643084 | 3.3:-62972038 | MS.gene031873:CDS |
| TGTAGAATGACCCATGTACG+TGG | 0.664295 | 3.3:+62972028 | None:intergenic |
| CTTCTTGTGTGGCATGACGT+GGG | 0.672360 | 3.3:+62972128 | None:intergenic |
| ATAACAGAAAATGACCGGCA+GGG | 0.686987 | 3.3:-62971863 | MS.gene031873:CDS |
| ATGAATTGGCCAAAGCAGTG+GGG | 0.694434 | 3.3:+62972295 | None:intergenic |
| GAATGACCCATGTACGTGGA+CGG | 0.707803 | 3.3:+62972032 | None:intergenic |
| AGGAGTTATATGGTGCAATG+CGG | 0.731326 | 3.3:+62972332 | None:intergenic |
| CGACAAGGACCAATTCCACG+CGG | 0.788216 | 3.3:-62971941 | MS.gene031873:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTATTTCACATATGAAT+TGG | + | chr3.3:62971614-62971633 | None:intergenic | 20.0% |
| ! | GAGTGATATATATGTTTACA+TGG | + | chr3.3:62972188-62972207 | None:intergenic | 25.0% |
| ACCAAATAACAGAAAATGAC+CGG | - | chr3.3:62972024-62972043 | MS.gene031873:CDS | 30.0% | |
| TCTATTAGTTCGTTAAAACC+CGG | + | chr3.3:62972005-62972024 | None:intergenic | 30.0% | |
| ! | TGTCAAGAAGAGTTTGAAAT+TGG | - | chr3.3:62972143-62972162 | MS.gene031873:CDS | 30.0% |
| !!! | AAGAGACTATTTTTTTGGAC+CGG | - | chr3.3:62971983-62972002 | MS.gene031873:CDS | 30.0% |
| !!! | GATGCAAGAGACTATTTTTT+TGG | - | chr3.3:62971978-62971997 | MS.gene031873:CDS | 30.0% |
| AAACGTGTTTGAATCGGAAT+TGG | + | chr3.3:62971907-62971926 | None:intergenic | 35.0% | |
| ACTCTGATTGTATTGTTCCA+TGG | - | chr3.3:62972204-62972223 | MS.gene031873:CDS | 35.0% | |
| AGAGTTGAAAGTTTCTACGT+TGG | + | chr3.3:62971512-62971531 | None:intergenic | 35.0% | |
| ATCAAGTCAGAGGAGTTATA+TGG | + | chr3.3:62971573-62971592 | None:intergenic | 35.0% | |
| ATTGCGTTTATACCTCTTTC+CGG | + | chr3.3:62972068-62972087 | None:intergenic | 35.0% | |
| TCAAACTCTTCTTGACAAAC+AGG | + | chr3.3:62972140-62972159 | None:intergenic | 35.0% | |
| TCATCATCAGAAGAAGAACA+AGG | + | chr3.3:62972272-62972291 | None:intergenic | 35.0% | |
| TGGTTGTTTATTCTCTCTCT+TGG | + | chr3.3:62971492-62971511 | None:intergenic | 35.0% | |
| TTGTTTATTCTCTCTCTTGG+AGG | + | chr3.3:62971489-62971508 | None:intergenic | 35.0% | |
| TTTGAATCGGAATTGGAAGA+AGG | + | chr3.3:62971900-62971919 | None:intergenic | 35.0% | |
| ! | CAAGAAGAGTTTGAAATTGG+TGG | - | chr3.3:62972146-62972165 | MS.gene031873:CDS | 35.0% |
| ! | TCTGATGATGAAAATGAGTG+TGG | - | chr3.3:62972281-62972300 | MS.gene031873:CDS | 35.0% |
| ! | TTCAGGTTCAGTTTGTGTTT+GGG | + | chr3.3:62971826-62971845 | None:intergenic | 35.0% |
| ! | TTGCTTTCGATTTTCACTGT+TGG | + | chr3.3:62972092-62972111 | None:intergenic | 35.0% |
| !!! | AGAGACTATTTTTTTGGACC+GGG | - | chr3.3:62971984-62972003 | MS.gene031873:CDS | 35.0% |
| AATAACAGAAAATGACCGGC+AGG | - | chr3.3:62972028-62972047 | MS.gene031873:CDS | 40.0% | |
| AGGAGTTATATGGTGCAATG+CGG | + | chr3.3:62971563-62971582 | None:intergenic | 40.0% | |
| ATAACAGAAAATGACCGGCA+GGG | - | chr3.3:62972029-62972048 | MS.gene031873:CDS | 40.0% | |
| ATATGAATTGGCCAAAGCAG+TGG | + | chr3.3:62971602-62971621 | None:intergenic | 40.0% | |
| CGATTCAAACACGTTTCAAC+CGG | - | chr3.3:62971911-62971930 | MS.gene031873:CDS | 40.0% | |
| CGGTTGAAACGTGTTTGAAT+CGG | + | chr3.3:62971913-62971932 | None:intergenic | 40.0% | |
| GAATTGTGAAGTCTAAGCCA+TGG | + | chr3.3:62972224-62972243 | None:intergenic | 40.0% | |
| GGAATCTCTTGACGACAAAT+TGG | + | chr3.3:62972251-62972270 | None:intergenic | 40.0% | |
| GGACAAGAATTTCGTCTCTT+TGG | - | chr3.3:62972348-62972367 | MS.gene031873:CDS | 40.0% | |
| GTTCATCCTCAAAGAGACAA+TGG | - | chr3.3:62972395-62972414 | MS.gene031873:CDS | 40.0% | |
| TATGAATTGGCCAAAGCAGT+GGG | + | chr3.3:62971601-62971620 | None:intergenic | 40.0% | |
| ! | GAAAATGAGTGTGGTGATGA+AGG | - | chr3.3:62972290-62972309 | MS.gene031873:CDS | 40.0% |
| ! | GTTCAGGTTCAGTTTGTGTT+TGG | + | chr3.3:62971827-62971846 | None:intergenic | 40.0% |
| ! | GTTCAGTTTGTGTTTGGGTT+GGG | + | chr3.3:62971821-62971840 | None:intergenic | 40.0% |
| ! | TTTCAACCGGTGATTTTTCC+AGG | - | chr3.3:62971924-62971943 | MS.gene031873:CDS | 40.0% |
| !! | GCCGGTCATTTTCTGTTATT+TGG | + | chr3.3:62972028-62972047 | None:intergenic | 40.0% |
| !! | GTAGGTTACAAAGGTGTTTG+AGG | - | chr3.3:62972324-62972343 | MS.gene031873:CDS | 40.0% |
| ACACAAACTGAACCTGAACC+CGG | - | chr3.3:62971828-62971847 | MS.gene031873:CDS | 45.0% | |
| ATGAATTGGCCAAAGCAGTG+GGG | + | chr3.3:62971600-62971619 | None:intergenic | 45.0% | |
| ATGGGTCATTCTACAACCTG+TGG | - | chr3.3:62971872-62971891 | MS.gene031873:CDS | 45.0% | |
| CCAGAACCATTGTCTCTTTG+AGG | + | chr3.3:62972404-62972423 | None:intergenic | 45.0% | |
| CCTCAAAGAGACAATGGTTC+TGG | - | chr3.3:62972401-62972420 | MS.gene031873:CDS | 45.0% | |
| CTTCTAGTAAACGCGCTTCT+GGG | + | chr3.3:62971683-62971702 | None:intergenic | 45.0% | |
| GAATTGGAAGAAGGATCCAC+AGG | + | chr3.3:62971891-62971910 | None:intergenic | 45.0% | |
| GGTTCAGTTTGTGTTTGGGT+TGG | + | chr3.3:62971822-62971841 | None:intergenic | 45.0% | |
| GTTATATGGTGCAATGCGGA+AGG | + | chr3.3:62971559-62971578 | None:intergenic | 45.0% | |
| TCTGGATTAAAGCGACGGAT+GGG | + | chr3.3:62971729-62971748 | None:intergenic | 45.0% | |
| TGTAGAATGACCCATGTACG+TGG | + | chr3.3:62971867-62971886 | None:intergenic | 45.0% | |
| TTCTAGTAAACGCGCTTCTG+GGG | + | chr3.3:62971682-62971701 | None:intergenic | 45.0% | |
| TTCTGGATTAAAGCGACGGA+TGG | + | chr3.3:62971730-62971749 | None:intergenic | 45.0% | |
| TTTATACCTCTTTCCGGCAC+CGG | + | chr3.3:62972062-62972081 | None:intergenic | 45.0% | |
| ! | AATGAGTGTGGTGATGAAGG+TGG | - | chr3.3:62972293-62972312 | MS.gene031873:CDS | 45.0% |
| ! | ATTTTTCCAGGTGGACGACA+AGG | - | chr3.3:62971936-62971955 | MS.gene031873:CDS | 45.0% |
| ! | GGGTTTCTGGATTAAAGCGA+CGG | + | chr3.3:62971734-62971753 | None:intergenic | 45.0% |
| !! | GGTTACAAAGGTGTTTGAGG+TGG | - | chr3.3:62972327-62972346 | MS.gene031873:CDS | 45.0% |
| !! | TGAAATTGGTGGTGAAGCGA+GGG | - | chr3.3:62972157-62972176 | MS.gene031873:CDS | 45.0% |
| !! | TTGAAATTGGTGGTGAAGCG+AGG | - | chr3.3:62972156-62972175 | MS.gene031873:CDS | 45.0% |
| ACTTCTTGTGTGGCATGACG+TGG | + | chr3.3:62971768-62971787 | None:intergenic | 50.0% | |
| CACAAACTGAACCTGAACCC+GGG | - | chr3.3:62971829-62971848 | MS.gene031873:CDS | 50.0% | |
| CGTCCACCTGGAAAAATCAC+CGG | + | chr3.3:62971933-62971952 | None:intergenic | 50.0% | |
| CTTCTTGTGTGGCATGACGT+GGG | + | chr3.3:62971767-62971786 | None:intergenic | 50.0% | |
| GAATGACCCATGTACGTGGA+CGG | + | chr3.3:62971863-62971882 | None:intergenic | 50.0% | |
| GATTAAAGCGACGGATGGGT+GGG | + | chr3.3:62971725-62971744 | None:intergenic | 50.0% | |
| GCTTCTAGTAAACGCGCTTC+TGG | + | chr3.3:62971684-62971703 | None:intergenic | 50.0% | |
| GTGAAGTCTACGACGAGTCT+TGG | + | chr3.3:62971645-62971664 | None:intergenic | 50.0% | |
| TCTACGACGAGTCTTGGTCT+TGG | + | chr3.3:62971639-62971658 | None:intergenic | 50.0% | |
| TGAATTGGCCAAAGCAGTGG+GGG | + | chr3.3:62971599-62971618 | None:intergenic | 50.0% | |
| TTGATATGCCCCCACTGCTT+TGG | - | chr3.3:62971588-62971607 | MS.gene031873:intron | 50.0% | |
| ! | CAACCGGTGATTTTTCCAGG+TGG | - | chr3.3:62971927-62971946 | MS.gene031873:CDS | 50.0% |
| ! | GTGGTGGAGGTAGGTTACAA+AGG | - | chr3.3:62972315-62972334 | MS.gene031873:CDS | 50.0% |
| ! | TCGTCTCTTTGGCCTTTCCA+TGG | - | chr3.3:62972359-62972378 | MS.gene031873:CDS | 50.0% |
| ! | TTCTGGGGAAGGATCATGTG+CGG | + | chr3.3:62971667-62971686 | None:intergenic | 50.0% |
| AAGAAGTTCCAGTGCGCCGT+CGG | - | chr3.3:62971781-62971800 | MS.gene031873:CDS | 55.0% | |
| ATTGGTCCTTGTCGTCCACC+TGG | + | chr3.3:62971945-62971964 | None:intergenic | 55.0% | |
| CCAACACCGTCCACGTACAT+GGG | - | chr3.3:62971854-62971873 | MS.gene031873:CDS | 55.0% | |
| CGACAAGGACCAATTCCACG+CGG | - | chr3.3:62971951-62971970 | MS.gene031873:CDS | 55.0% | |
| CTCCGATACCTGCCATGGAA+AGG | + | chr3.3:62972374-62972393 | None:intergenic | 55.0% | |
| GAACTCTCCGATACCTGCCA+TGG | + | chr3.3:62972379-62972398 | None:intergenic | 55.0% | |
| GATGGGTGGGTCAAGCATGA+TGG | + | chr3.3:62971712-62971731 | None:intergenic | 55.0% | |
| GCGCACTGGAACTTCTTGTG+TGG | + | chr3.3:62971778-62971797 | None:intergenic | 55.0% | |
| GGATTAAAGCGACGGATGGG+TGG | + | chr3.3:62971726-62971745 | None:intergenic | 55.0% | |
| GGCCTTTCCATGGCAGGTAT+CGG | - | chr3.3:62972369-62972388 | MS.gene031873:CDS | 55.0% | |
| GGTGATGATCTCCTGTCCGA+CGG | + | chr3.3:62971800-62971819 | None:intergenic | 55.0% | |
| TCCAACACCGTCCACGTACA+TGG | - | chr3.3:62971853-62971872 | MS.gene031873:CDS | 55.0% | |
| ! | AGTAAACGCGCTTCTGGGGA+AGG | + | chr3.3:62971678-62971697 | None:intergenic | 55.0% |
| ! | CTCTTTGGCCTTTCCATGGC+AGG | - | chr3.3:62972363-62972382 | MS.gene031873:CDS | 55.0% |
| ! | GAGTGTGGTGATGAAGGTGG+TGG | - | chr3.3:62972296-62972315 | MS.gene031873:CDS | 55.0% |
| ! | GTGGGGGCATATCAAGTCAG+AGG | + | chr3.3:62971583-62971602 | None:intergenic | 55.0% |
| ! | TGCGGAAGGTGCAGTTGCAT+TGG | + | chr3.3:62971545-62971564 | None:intergenic | 55.0% |
| ! | TGTGGTGATGAAGGTGGTGG+TGG | - | chr3.3:62972299-62972318 | MS.gene031873:CDS | 55.0% |
| !! | ATGAAGGTGGTGGTGGAGGT+AGG | - | chr3.3:62972306-62972325 | MS.gene031873:CDS | 55.0% |
| CCCATGTACGTGGACGGTGT+TGG | + | chr3.3:62971857-62971876 | None:intergenic | 60.0% | |
| GCATCAACGCCGCGTGGAAT+TGG | + | chr3.3:62971963-62971982 | None:intergenic | 60.0% | |
| TCTCTTGCATCAACGCCGCG+TGG | + | chr3.3:62971969-62971988 | None:intergenic | 60.0% | |
| ! | ACGTGGACGGTGTTGGATCC+CGG | + | chr3.3:62971850-62971869 | None:intergenic | 60.0% |
| ! | ATACCTCTTTCCGGCACCGG+TGG | + | chr3.3:62972059-62972078 | None:intergenic | 60.0% |
| !! | ATGACGTGGGCGTCGGGTTT+GGG | + | chr3.3:62971754-62971773 | None:intergenic | 60.0% |
| !! | GGTGATGAAGGTGGTGGTGG+AGG | - | chr3.3:62972302-62972321 | MS.gene031873:CDS | 60.0% |
| GTGTGGCATGACGTGGGCGT+CGG | + | chr3.3:62971761-62971780 | None:intergenic | 65.0% | |
| TGTGGCATGACGTGGGCGTC+GGG | + | chr3.3:62971760-62971779 | None:intergenic | 65.0% | |
| ! | CGGTGTTGGATCCCGGGTTC+AGG | + | chr3.3:62971843-62971862 | None:intergenic | 65.0% |
| ! | CGTGGACGGTGTTGGATCCC+GGG | + | chr3.3:62971849-62971868 | None:intergenic | 65.0% |
| !! | CATGACGTGGGCGTCGGGTT+TGG | + | chr3.3:62971755-62971774 | None:intergenic | 65.0% |
| !! | GGGCGTCGGGTTTGGGTTTC+TGG | + | chr3.3:62971747-62971766 | None:intergenic | 65.0% |
| GTTCCAGTGCGCCGTCGGAC+AGG | - | chr3.3:62971786-62971805 | MS.gene031873:CDS | 70.0% | |
| TCTCCTGTCCGACGGCGCAC+TGG | + | chr3.3:62971792-62971811 | None:intergenic | 70.0% | |
| TGACCGGCAGGGTCCACCAC+CGG | - | chr3.3:62972040-62972059 | MS.gene031873:CDS | 70.0% | |
| ! | CCACCACCGGTGCCGGAAAG+AGG | - | chr3.3:62972053-62972072 | MS.gene031873:CDS | 70.0% |
| !! | CCTCTTTCCGGCACCGGTGG+TGG | + | chr3.3:62972056-62972075 | None:intergenic | 70.0% |
| GCAGGGTCCACCACCGGTGC+CGG | - | chr3.3:62972046-62972065 | MS.gene031873:CDS | 75.0% | |
| !! | GCACCGGTGGTGGACCCTGC+CGG | + | chr3.3:62972046-62972065 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 62971474 | 62972440 | 62971474 | ID=MS.gene031873 |
| chr3.3 | mRNA | 62971474 | 62972440 | 62971474 | ID=MS.gene031873.t1;Parent=MS.gene031873 |
| chr3.3 | exon | 62971726 | 62972440 | 62971726 | ID=MS.gene031873.t1.exon1;Parent=MS.gene031873.t1 |
| chr3.3 | CDS | 62971726 | 62972440 | 62971726 | ID=cds.MS.gene031873.t1;Parent=MS.gene031873.t1 |
| chr3.3 | exon | 62971474 | 62971529 | 62971474 | ID=MS.gene031873.t1.exon2;Parent=MS.gene031873.t1 |
| chr3.3 | CDS | 62971474 | 62971529 | 62971474 | ID=cds.MS.gene031873.t1;Parent=MS.gene031873.t1 |
| Gene Sequence |
| Protein sequence |
