AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031879.t1 MTR_3g072560 96.491 399 14 0 1 399 1 399 0.0 790
MS.gene031879.t1 MTR_3g072530 64.689 354 113 4 16 360 12 362 3.84e-165 467
MS.gene031879.t1 MTR_1g030600 53.385 384 164 6 14 390 14 389 9.72e-132 384
MS.gene031879.t1 MTR_3g072520 53.168 363 157 5 16 366 7 368 5.56e-127 371
MS.gene031879.t1 MTR_1g030580 51.226 367 164 5 18 379 16 372 2.37e-120 354
MS.gene031879.t1 MTR_1g068630 50.742 337 158 4 16 350 13 343 1.84e-119 351
MS.gene031879.t1 MTR_3g072500 47.838 370 183 4 18 380 20 386 2.41e-119 352
MS.gene031879.t1 MTR_0096s0100 49.858 351 166 4 18 366 18 360 3.46e-119 350
MS.gene031879.t1 MTR_7g100050 48.138 349 172 4 14 353 9 357 4.91e-117 346
MS.gene031879.t1 MTR_3g072530 56.250 288 82 4 16 262 12 296 2.05e-106 316
MS.gene031879.t1 MTR_8g041390 47.353 340 169 4 14 343 9 348 1.11e-104 315
MS.gene031879.t1 MTR_3g012420 46.313 339 173 3 14 343 13 351 8.88e-104 312
MS.gene031879.t1 MTR_3g072500 45.804 286 145 4 102 380 1 283 2.74e-83 256
MS.gene031879.t1 MTR_1g074070 39.169 337 203 2 14 349 12 347 2.90e-81 253
MS.gene031879.t1 MTR_1g074120 38.286 350 214 2 4 352 2 350 3.80e-81 253
MS.gene031879.t1 MTR_1g074160 39.286 336 194 2 18 343 13 348 1.32e-79 249
MS.gene031879.t1 MTR_1g051120 38.310 355 213 3 4 352 2 356 4.70e-79 248
MS.gene031879.t1 MTR_1g073990 41.411 326 188 3 18 341 16 340 7.63e-79 247
MS.gene031879.t1 MTR_1g070175 35.422 367 216 5 5 361 3 358 9.82e-78 244
MS.gene031879.t1 MTR_3g072500 47.390 249 127 2 18 262 20 268 1.40e-77 241
MS.gene031879.t1 MTR_1g074020 39.077 325 196 2 18 341 13 336 3.66e-77 243
MS.gene031879.t1 MTR_3g112480 39.091 330 180 2 23 334 25 351 6.55e-72 231
MS.gene031879.t1 MTR_1g023180 36.932 352 194 3 20 346 23 371 2.30e-70 227
MS.gene031879.t1 MTR_2g007960 35.475 358 220 3 18 365 12 368 7.04e-70 225
MS.gene031879.t1 MTR_4g094340 36.337 344 213 2 18 356 9 351 1.64e-69 223
MS.gene031879.t1 MTR_4g094340 36.337 344 213 2 18 356 27 369 1.70e-69 224
MS.gene031879.t1 MTR_6g081840 38.663 344 203 4 27 362 19 362 2.99e-69 223
MS.gene031879.t1 MTR_2g007990 34.465 383 238 4 18 392 15 392 4.53e-69 223
MS.gene031879.t1 MTR_6g036450 34.472 322 205 2 18 334 16 336 8.92e-68 219
MS.gene031879.t1 MTR_5g021160 36.280 328 205 1 16 339 5 332 1.88e-67 218
MS.gene031879.t1 MTR_2g007970 34.109 387 238 5 18 392 12 393 4.92e-66 215
MS.gene031879.t1 MTR_2g027030 35.838 346 208 4 18 350 12 356 5.75e-66 214
MS.gene031879.t1 MTR_3g095460 33.739 329 213 1 18 341 5 333 1.62e-65 212
MS.gene031879.t1 MTR_2g016710 33.799 358 227 4 18 374 8 356 1.52e-64 210
MS.gene031879.t1 MTR_2g007260 34.527 391 238 6 18 392 14 402 1.53e-64 212
MS.gene031879.t1 MTR_3g095420 31.335 367 231 6 19 376 8 362 9.62e-64 208
MS.gene031879.t1 MTR_8g092650 35.174 344 209 3 18 353 5 342 1.32e-62 205
MS.gene031879.t1 MTR_1g038560 34.226 336 216 3 18 350 3 336 8.28e-62 202
MS.gene031879.t1 MTR_2g102340 31.746 378 238 6 12 380 5 371 1.89e-60 200
MS.gene031879.t1 MTR_3g090550 33.846 325 201 4 35 356 23 336 3.75e-60 198
MS.gene031879.t1 MTR_4g094342 34.169 319 203 2 18 329 13 331 6.19e-59 196
MS.gene031879.t1 MTR_4g106720 32.448 339 213 5 19 346 12 345 7.50e-59 195
MS.gene031879.t1 MTR_1g052205 44.400 250 116 8 131 375 13 244 1.93e-58 191
MS.gene031879.t1 MTR_3g072500 47.500 200 100 3 18 212 20 219 1.16e-57 188
MS.gene031879.t1 MTR_1g114210 32.277 347 214 4 17 352 10 346 2.27e-57 191
MS.gene031879.t1 MTR_7g111830 31.627 332 218 2 19 341 8 339 2.52e-57 192
MS.gene031879.t1 MTR_3g095450 33.231 325 207 4 19 334 6 329 7.43e-57 190
MS.gene031879.t1 MTR_4g094340 35.088 285 180 1 77 356 1 285 1.52e-56 187
MS.gene031879.t1 MTR_5g034990 33.923 339 217 4 19 356 15 347 2.87e-56 189
MS.gene031879.t1 MTR_5g034980 35.647 317 196 4 23 334 12 325 3.33e-56 188
MS.gene031879.t1 MTR_8g006010 34.048 373 230 5 19 386 11 372 3.42e-56 189
MS.gene031879.t1 MTR_0103s0090 36.392 316 193 5 44 356 37 347 5.62e-56 188
MS.gene031879.t1 MTR_4g094352 35.556 360 213 6 18 363 12 366 5.81e-56 189
MS.gene031879.t1 MTR_4g094360 32.337 368 234 6 16 368 12 379 1.41e-54 186
MS.gene031879.t1 MTR_2g065550 32.493 357 228 3 19 362 11 367 1.82e-54 184
MS.gene031879.t1 MTR_3g112480 37.234 282 156 2 71 334 18 296 2.61e-54 183
MS.gene031879.t1 MTR_4g094362 31.714 350 227 3 16 357 12 357 6.04e-54 183
MS.gene031879.t1 MTR_5g034910 34.154 325 209 4 23 343 12 335 6.18e-54 182
MS.gene031879.t1 MTR_8g006120 34.911 338 216 3 19 352 11 348 1.63e-52 179
MS.gene031879.t1 MTR_4g129650 30.585 376 239 6 19 388 9 368 1.47e-51 177
MS.gene031879.t1 MTR_3g019050 28.535 396 269 7 1 390 1 388 1.74e-51 177
MS.gene031879.t1 MTR_2g016710 34.459 296 192 2 18 312 8 302 1.76e-51 175
MS.gene031879.t1 MTR_5g034930 37.048 332 199 8 22 346 10 338 1.80e-51 176
MS.gene031879.t1 MTR_1g074160 36.735 245 154 1 18 261 13 257 1.33e-50 171
MS.gene031879.t1 MTR_3g095440 31.385 325 213 3 19 334 6 329 2.39e-49 171
MS.gene031879.t1 MTR_1g014510 31.915 329 213 4 19 339 12 337 3.13e-49 173
MS.gene031879.t1 MTR_6g007743 34.667 300 189 5 43 339 37 332 3.34e-49 170
MS.gene031879.t1 MTR_5g069040 27.068 399 275 4 1 390 1 392 4.90e-49 171
MS.gene031879.t1 MTR_5g068790 27.441 379 263 4 1 374 1 372 1.22e-48 169
MS.gene031879.t1 MTR_0103s0090 36.187 257 160 2 101 356 3 256 4.76e-48 165
MS.gene031879.t1 MTR_1g030400 27.348 362 226 5 44 395 33 367 9.88e-48 167
MS.gene031879.t1 MTR_5g025340 32.239 335 207 4 18 334 10 342 2.17e-46 164
MS.gene031879.t1 MTR_6g007750 32.249 338 221 5 7 339 1 335 3.62e-46 162
MS.gene031879.t1 MTR_6g007747 36.246 309 191 5 43 349 37 341 6.23e-46 162
MS.gene031879.t1 MTR_5g021160 35.060 251 159 1 16 262 5 255 7.13e-46 159
MS.gene031879.t1 MTR_8g092650 36.327 245 142 3 117 353 26 264 1.17e-45 158
MS.gene031879.t1 MTR_5g089390 28.144 334 230 4 23 354 19 344 1.81e-45 160
MS.gene031879.t1 MTR_5g025370 31.454 337 209 4 18 334 10 344 4.45e-45 160
MS.gene031879.t1 MTR_5g025290 29.738 343 223 3 18 343 39 380 5.44e-45 160
MS.gene031879.t1 MTR_5g025290 29.738 343 223 3 18 343 11 352 6.04e-45 160
MS.gene031879.t1 MTR_8g006090 32.733 333 221 3 19 348 12 344 1.64e-44 158
MS.gene031879.t1 MTR_5g021160 33.871 248 160 1 96 339 2 249 1.96e-44 155
MS.gene031879.t1 MTR_4g094360 31.457 302 202 3 16 312 12 313 2.01e-42 151
MS.gene031879.t1 MTR_6g007760 30.435 299 204 3 19 314 12 309 2.66e-42 151
MS.gene031879.t1 MTR_4g094360 32.971 276 170 6 108 368 57 332 3.41e-42 151
MS.gene031879.t1 MTR_8g072350 28.000 375 249 6 18 375 9 379 5.88e-42 152
MS.gene031879.t1 MTR_5g034970 34.069 317 188 5 23 334 12 312 6.40e-42 150
MS.gene031879.t1 MTR_5g025400 29.444 360 226 5 18 351 11 368 9.17e-42 151
MS.gene031879.t1 MTR_6g007753 36.170 282 173 5 62 339 338 616 1.77e-41 155
MS.gene031879.t1 MTR_6g007753 35.377 212 134 2 129 339 83 292 6.98e-29 119
MS.gene031879.t1 MTR_6g007740 32.641 337 218 6 7 339 1 332 2.28e-41 152
MS.gene031879.t1 MTR_8g006050 30.514 331 209 6 49 374 25 339 5.00e-41 148
MS.gene031879.t1 MTR_6g007757 34.024 338 213 7 7 339 1 333 2.37e-40 147
MS.gene031879.t1 MTR_4g094340 33.600 250 160 2 18 262 9 257 7.05e-40 143
MS.gene031879.t1 MTR_4g094340 33.600 250 160 2 18 262 27 275 1.07e-39 143
MS.gene031879.t1 MTR_5g025330 29.341 334 218 3 18 334 9 341 5.49e-39 147
MS.gene031879.t1 MTR_3g112480 34.802 227 127 2 126 334 1 224 4.72e-37 135
MS.gene031879.t1 MTR_4g129650 31.799 239 158 2 117 353 3 238 6.79e-37 135
MS.gene031879.t1 MTR_5g034980 32.639 288 168 5 23 287 12 296 6.29e-36 134
MS.gene031879.t1 MTR_1g051120 34.762 210 135 1 4 211 2 211 8.59e-36 132
MS.gene031879.t1 MTR_1g051120 34.615 208 134 1 4 209 2 209 2.65e-35 129
MS.gene031879.t1 MTR_1g068720 47.826 138 69 3 207 341 93 230 8.65e-35 129
MS.gene031879.t1 MTR_1g068720 37.805 82 51 0 13 94 9 90 1.32e-11 64.7
MS.gene031879.t1 MTR_8g006090 32.323 297 198 3 19 312 12 308 7.56e-34 128
MS.gene031879.t1 MTR_8g006090 32.812 256 170 2 95 348 9 264 9.49e-34 127
MS.gene031879.t1 MTR_4g100840 28.198 344 211 11 23 343 19 349 4.08e-31 122
MS.gene031879.t1 MTR_2g102340 30.078 256 172 4 12 262 31 284 4.19e-31 121
MS.gene031879.t1 MTR_3g095440 28.571 252 170 3 19 261 6 256 9.81e-31 119
MS.gene031879.t1 MTR_5g012650 30.267 337 206 8 23 339 13 340 1.27e-30 120
MS.gene031879.t1 MTR_4g094340 35.678 199 122 2 18 211 27 224 3.48e-30 116
MS.gene031879.t1 MTR_6g007757 31.765 255 164 7 7 256 1 250 1.14e-24 102
MS.gene031879.t1 MTR_4g094342 30.000 200 133 2 18 210 13 212 8.59e-24 99.8
MS.gene031879.t1 MTR_6g007470 45.833 96 51 1 191 285 89 184 6.08e-21 90.9
MS.gene031879.t1 MTR_8g006090 32.340 235 156 3 19 250 12 246 1.24e-20 91.7
MS.gene031879.t1 MTR_8g076800 37.097 124 70 2 180 296 140 262 3.21e-20 90.1
MS.gene031879.t1 MTR_1g014790 33.871 124 76 2 91 209 36 158 4.10e-16 77.0
MS.gene031879.t1 MTR_4g094348 36.134 119 65 2 103 210 7 125 2.86e-15 73.9
MS.gene031879.t1 MTR_1g092700 43.210 81 37 2 278 352 1 78 3.02e-14 67.8
MS.gene031879.t1 MTR_3g093450 27.660 188 89 5 159 337 33 182 3.24e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031879.t1 AT4G08290 56.077 362 146 2 18 366 12 373 1.09e-143 414
MS.gene031879.t1 AT2G37460 47.154 369 192 2 16 383 12 378 2.99e-120 354
MS.gene031879.t1 AT1G21890 48.806 377 171 4 18 380 10 378 1.58e-116 345
MS.gene031879.t1 AT2G39510 50.445 337 159 3 18 346 7 343 8.42e-115 340
MS.gene031879.t1 AT5G07050 43.921 403 199 6 5 384 4 402 1.29e-111 333
MS.gene031879.t1 AT4G08300 49.068 322 159 2 18 334 10 331 8.56e-110 327
MS.gene031879.t1 AT1G44800 46.705 349 170 3 18 359 10 349 8.20e-108 322
MS.gene031879.t1 AT2G40900 44.286 350 192 1 16 365 8 354 4.02e-103 311
MS.gene031879.t1 AT4G08290 58.635 249 99 1 18 262 12 260 8.72e-102 303
MS.gene031879.t1 AT1G21890 51.634 306 137 1 18 312 10 315 7.74e-101 303
MS.gene031879.t1 AT2G37450 45.294 340 162 4 16 353 6 323 1.39e-93 284
MS.gene031879.t1 AT3G56620 43.671 316 176 2 16 331 8 321 1.82e-90 278
MS.gene031879.t1 AT5G13670 42.121 330 178 5 14 334 3 328 1.80e-83 260
MS.gene031879.t1 AT2G37450 48.413 252 127 3 104 353 1 251 9.15e-74 231
MS.gene031879.t1 AT1G75500 35.530 349 214 3 20 357 21 369 1.21e-71 229
MS.gene031879.t1 AT1G75500 35.530 349 214 3 20 357 21 369 1.21e-71 229
MS.gene031879.t1 AT3G18200 38.602 329 193 5 23 345 39 364 1.62e-71 229
MS.gene031879.t1 AT5G64700 36.765 340 199 4 16 342 5 341 2.73e-69 223
MS.gene031879.t1 AT3G53210 37.037 324 197 2 16 334 7 328 4.59e-66 214
MS.gene031879.t1 AT3G30340 34.451 328 210 2 18 341 10 336 1.66e-63 208
MS.gene031879.t1 AT1G09380 32.022 356 226 2 19 358 8 363 6.30e-63 207
MS.gene031879.t1 AT2G37450 47.111 225 116 3 131 353 61 284 3.68e-60 197
MS.gene031879.t1 AT4G30420 32.292 384 245 5 18 394 8 383 9.09e-58 193
MS.gene031879.t1 AT4G30420 32.190 379 242 5 23 394 3 373 1.93e-56 190
MS.gene031879.t1 AT1G43650 34.211 342 217 3 13 349 1 339 5.50e-55 185
MS.gene031879.t1 AT1G68170 34.247 365 231 4 7 365 1 362 1.76e-54 184
MS.gene031879.t1 AT1G68170 35.244 349 217 4 23 365 7 352 2.11e-54 184
MS.gene031879.t1 AT1G01070 33.138 341 223 3 19 355 16 355 6.05e-54 183
MS.gene031879.t1 AT1G25270 32.578 353 234 2 18 366 2 354 6.39e-54 182
MS.gene031879.t1 AT5G40230 31.728 353 217 6 16 350 18 364 7.40e-53 180
MS.gene031879.t1 AT4G28040 29.730 370 237 6 18 384 7 356 1.69e-51 176
MS.gene031879.t1 AT4G28040 29.730 370 237 6 18 384 7 356 1.69e-51 176
MS.gene031879.t1 AT4G28040 29.730 370 237 6 18 384 7 356 1.69e-51 176
MS.gene031879.t1 AT4G28040 29.730 370 237 6 18 384 7 356 1.69e-51 176
MS.gene031879.t1 AT4G28040 29.730 370 237 6 18 384 7 356 1.69e-51 176
MS.gene031879.t1 AT4G01430 30.878 353 234 4 19 363 9 359 3.51e-50 173
MS.gene031879.t1 AT4G01440 30.275 327 223 3 21 344 14 338 3.75e-49 170
MS.gene031879.t1 AT1G11450 31.858 339 222 5 19 352 16 350 2.18e-48 168
MS.gene031879.t1 AT5G40240 30.581 327 216 4 16 334 17 340 1.33e-47 166
MS.gene031879.t1 AT5G40240 30.581 327 216 4 16 334 17 340 1.33e-47 166
MS.gene031879.t1 AT5G40240 30.581 327 216 4 16 334 31 354 2.29e-47 166
MS.gene031879.t1 AT1G70260 28.775 351 236 4 35 375 28 374 1.40e-46 164
MS.gene031879.t1 AT1G01070 33.559 295 191 3 65 355 15 308 2.65e-46 161
MS.gene031879.t1 AT5G40210 33.228 316 189 7 23 334 17 314 5.90e-46 161
MS.gene031879.t1 AT1G11450 33.115 305 195 5 53 352 6 306 7.04e-46 160
MS.gene031879.t1 AT5G64700 35.659 258 151 3 16 261 5 259 1.09e-45 158
MS.gene031879.t1 AT3G18200 37.975 237 138 5 115 345 1 234 2.28e-45 157
MS.gene031879.t1 AT3G53210 35.135 259 160 3 81 334 16 271 2.48e-45 159
MS.gene031879.t1 AT3G53210 35.317 252 156 2 16 262 7 256 3.03e-45 157
MS.gene031879.t1 AT1G11460 31.153 321 214 3 19 334 16 334 5.54e-45 159
MS.gene031879.t1 AT1G11450 32.781 302 194 5 56 352 2 299 3.08e-44 155
MS.gene031879.t1 AT3G28050 31.498 327 215 6 44 365 37 359 5.90e-44 157
MS.gene031879.t1 AT5G45370 29.565 345 206 5 31 364 32 350 3.53e-42 152
MS.gene031879.t1 AT4G01440 29.932 294 202 2 21 312 14 305 5.83e-42 150
MS.gene031879.t1 AT4G15540 29.738 343 224 5 16 350 14 347 5.53e-41 148
MS.gene031879.t1 AT4G15540 29.738 343 224 5 16 350 14 347 5.53e-41 148
MS.gene031879.t1 AT5G45370 29.345 351 223 5 31 364 32 374 5.95e-41 149
MS.gene031879.t1 AT5G45370 29.345 351 223 5 31 364 32 374 5.95e-41 149
MS.gene031879.t1 AT3G28100 30.952 336 216 8 23 349 18 346 1.24e-40 147
MS.gene031879.t1 AT4G01450 31.118 331 225 2 38 367 29 357 2.03e-40 147
MS.gene031879.t1 AT3G28080 32.653 294 181 8 67 351 62 347 3.62e-40 146
MS.gene031879.t1 AT4G01430 31.126 302 198 4 19 312 9 308 4.14e-40 145
MS.gene031879.t1 AT3G30340 30.769 260 175 2 18 274 10 267 1.77e-39 142
MS.gene031879.t1 AT3G45870 29.664 327 212 3 18 329 11 334 2.05e-39 145
MS.gene031879.t1 AT3G28130 31.765 340 213 10 30 361 25 353 2.13e-39 144
MS.gene031879.t1 AT3G28130 32.836 268 164 7 101 361 9 267 2.54e-39 142
MS.gene031879.t1 AT3G28130 32.836 268 164 7 101 361 9 267 2.54e-39 142
MS.gene031879.t1 AT3G28080 32.946 258 158 6 102 351 8 258 1.81e-38 139
MS.gene031879.t1 AT3G28080 32.946 258 158 6 102 351 8 258 1.81e-38 139
MS.gene031879.t1 AT3G28080 32.946 258 158 6 102 351 8 258 1.81e-38 139
MS.gene031879.t1 AT3G28080 32.946 258 158 6 102 351 8 258 1.81e-38 139
MS.gene031879.t1 AT3G28070 33.198 247 151 6 101 339 7 247 2.06e-38 139
MS.gene031879.t1 AT3G28070 31.922 307 193 8 42 339 40 339 3.16e-38 141
MS.gene031879.t1 AT1G11450 30.769 299 199 4 19 312 16 311 7.19e-38 139
MS.gene031879.t1 AT3G28080 32.616 279 172 7 81 351 69 339 1.10e-37 139
MS.gene031879.t1 AT1G60050 27.557 352 241 4 19 356 13 364 1.30e-37 140
MS.gene031879.t1 AT5G47470 28.783 337 215 6 23 343 62 389 4.54e-37 139
MS.gene031879.t1 AT5G47470 28.783 337 215 6 23 343 34 361 4.97e-37 138
MS.gene031879.t1 AT4G01450 28.701 331 215 3 38 367 29 339 1.26e-36 136
MS.gene031879.t1 AT5G47470 28.746 327 215 6 23 340 62 379 2.02e-36 137
MS.gene031879.t1 AT1G11450 32.567 261 167 5 97 352 2 258 7.97e-36 132
MS.gene031879.t1 AT4G01450 34.123 211 137 1 38 248 29 237 9.69e-36 132
MS.gene031879.t1 AT4G19185 30.031 323 204 3 31 334 33 352 1.32e-35 135
MS.gene031879.t1 AT4G01440 31.739 230 153 2 21 248 14 241 6.80e-34 127
MS.gene031879.t1 AT3G45870 28.387 310 204 3 18 312 11 317 1.57e-32 125
MS.gene031879.t1 AT1G43650 33.613 238 157 1 13 250 1 237 5.69e-31 119
MS.gene031879.t1 AT4G01450 34.715 193 124 1 38 230 29 219 5.93e-31 119
MS.gene031879.t1 AT4G24980 26.549 339 169 7 35 365 3 269 6.62e-29 114
MS.gene031879.t1 AT3G28070 31.250 240 152 6 81 312 80 314 1.04e-28 114
MS.gene031879.t1 AT4G01440 28.070 228 161 2 120 344 3 230 5.28e-28 111
MS.gene031879.t1 AT4G01440 28.070 228 161 2 120 344 3 230 5.28e-28 111
MS.gene031879.t1 AT3G28130 30.802 237 148 7 132 361 1 228 1.98e-27 108
MS.gene031879.t1 AT4G19185 28.682 258 162 3 96 334 20 274 5.05e-27 110
MS.gene031879.t1 AT3G28080 30.263 228 144 6 132 351 1 221 1.31e-26 107
MS.gene031879.t1 AT4G16620 25.581 344 245 5 25 363 18 355 5.95e-26 107
MS.gene031879.t1 AT3G45870 28.629 248 160 2 18 250 11 256 1.19e-25 105
MS.gene031879.t1 AT3G28070 30.556 216 136 6 132 339 1 210 1.26e-25 104
MS.gene031879.t1 AT3G28080 30.375 293 135 9 67 351 62 293 1.75e-25 105
MS.gene031879.t1 AT5G45370 27.143 280 179 5 102 364 1 272 3.81e-25 103
MS.gene031879.t1 AT5G45370 27.143 280 179 5 102 364 1 272 3.81e-25 103
MS.gene031879.t1 AT4G01430 29.279 222 152 2 147 363 1 222 7.61e-24 99.4
MS.gene031879.t1 AT3G28080 30.350 257 112 7 102 351 8 204 1.30e-23 98.2
MS.gene031879.t1 AT3G28100 30.453 243 156 6 23 256 18 256 1.67e-22 96.3
MS.gene031879.t1 AT3G45870 27.727 220 141 3 125 329 43 259 1.15e-19 89.4
MS.gene031879.t1 AT4G16620 26.515 264 184 4 104 363 1 258 2.07e-19 87.8
MS.gene031879.t1 AT4G16620 26.515 264 184 4 104 363 1 258 2.07e-19 87.8
MS.gene031879.t1 AT3G28100 36.111 144 90 2 23 165 18 160 2.77e-18 84.3
MS.gene031879.t1 AT3G28130 29.362 235 154 6 30 256 25 255 9.17e-18 82.8
MS.gene031879.t1 AT5G45370 25.301 249 161 5 133 364 74 314 9.08e-17 80.9
MS.gene031879.t1 AT4G16620 26.577 222 146 3 25 237 18 231 9.14e-17 80.1
MS.gene031879.t1 AT3G28130 36.496 137 84 3 30 165 25 159 6.11e-14 70.9
MS.gene031879.t1 AT3G45870 26.396 197 127 3 131 312 49 242 3.96e-13 69.3
MS.gene031879.t1 AT3G45870 26.396 197 127 3 131 312 49 242 3.96e-13 69.3
MS.gene031879.t1 AT3G45870 29.496 139 97 1 191 329 46 183 1.57e-12 67.4

Find 106 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGCAATAATATCAATTT+TGG 0.048499 3.4:+71383947 None:intergenic
TGATATTATTGCTGTAAATT+TGG 0.125297 3.4:-71383940 MS.gene031879:CDS
GGGCCATTGGCTGGGATTAT+AGG 0.130460 3.4:-71384501 MS.gene031879:CDS
GGATCATCTATTGCAGTAAT+TGG 0.178775 3.4:+71383969 None:intergenic
TTAATGATTGGCCTTCAATT+TGG 0.244378 3.4:-71386978 MS.gene031879:CDS
AATGGTTGATGATGGTAATT+TGG 0.265083 3.4:+71384013 None:intergenic
TGCTTCTTTCTCCAATTTGT+TGG 0.276722 3.4:+71383881 None:intergenic
TGGTGCTCTTTATATACTAA+TGG 0.277546 3.4:-71384838 MS.gene031879:CDS
CATGATCATCGTTGCTTGTT+TGG 0.277709 3.4:-71384274 MS.gene031879:CDS
GTCTGATTCTGAATAGTCTT+TGG 0.279240 3.4:+71384037 None:intergenic
GGCTCCACTATTTCATCCTT+TGG 0.289797 3.4:+71383903 None:intergenic
CCCTATCTTCCTACAAATAA+TGG 0.307326 3.4:-71386593 MS.gene031879:CDS
TAACCAAAGCTTCACTTACT+TGG 0.316119 3.4:-71386368 MS.gene031879:CDS
GGCCTTCAATTTGGTATGGC+TGG 0.339650 3.4:-71386969 MS.gene031879:CDS
CACAAGCTTGGGCCATTGGC+TGG 0.341159 3.4:-71384510 MS.gene031879:CDS
AGGCCAATCATTAAGAGATA+TGG 0.350148 3.4:+71386987 None:intergenic
AATAGTGGAGCCCAACAAAT+TGG 0.353939 3.4:-71383892 MS.gene031879:CDS
TCAATTCATTGCAGTATCAT+AGG 0.356273 3.4:-71384107 MS.gene031879:intron
ACCATTATTTGTAGGAAGAT+AGG 0.358039 3.4:+71386592 None:intergenic
GCTTCTTTCTCCAATTTGTT+GGG 0.359425 3.4:+71383882 None:intergenic
TTCCCCACACAACTGTATAA+AGG 0.359887 3.4:+71384063 None:intergenic
TTGTTCTTGCAGTCATCTTC+CGG 0.370240 3.4:-71386282 MS.gene031879:intron
ATGGCTGGGAATTACATCTT+TGG 0.373494 3.4:-71386954 MS.gene031879:CDS
TCCCCAAGTAAGTGAAGCTT+TGG 0.375392 3.4:+71386365 None:intergenic
ATGATCATCGTTGCTTGTTT+GGG 0.382857 3.4:-71384273 MS.gene031879:CDS
ATTGGAACATTAGTAACCTT+TGG 0.389187 3.4:-71384969 MS.gene031879:CDS
CGAAGTCAAGCCAAAGTGAT+TGG 0.398988 3.4:-71384987 MS.gene031879:CDS
TTGCTTGTGCTCCTCCCGCC+AGG 0.399077 3.4:+71384563 None:intergenic
ATATAGGGAATAGTTAGTTC+AGG 0.402881 3.4:-71384372 MS.gene031879:intron
AACCAAAGCTTCACTTACTT+GGG 0.409335 3.4:-71386367 MS.gene031879:CDS
CTTCCTACAAATAATGGTGC+TGG 0.415319 3.4:-71386587 MS.gene031879:CDS
GGTGCTCTTTATATACTAAT+GGG 0.415428 3.4:-71384837 MS.gene031879:CDS
AAGATAGGGAGTGTCATCTT+TGG 0.425008 3.4:+71386607 None:intergenic
TCCACTATTTCATCCTTTGG+TGG 0.427193 3.4:+71383906 None:intergenic
AAACCATATCTCTTAATGAT+TGG 0.433291 3.4:-71386990 MS.gene031879:CDS
GGAATTGCATACTATGTTCA+AGG 0.435329 3.4:-71384351 MS.gene031879:CDS
CTTTGGTGGTGCATTGCTAA+TGG 0.441592 3.4:-71384952 MS.gene031879:CDS
GTTGCCAATGATAGCTCTGC+TGG 0.442544 3.4:+71384595 None:intergenic
CATTCACAAGCTTGGGCCAT+TGG 0.445558 3.4:-71384514 MS.gene031879:CDS
ATCCCAGCACCATTATTTGT+AGG 0.447578 3.4:+71386584 None:intergenic
TATAAAGAGCACCAGCAGTT+TGG 0.451662 3.4:+71384847 None:intergenic
TTTCATCCTTTGGTGGTGGT+TGG 0.454348 3.4:+71383913 None:intergenic
CCGAACGTCATTCACAAGCT+TGG 0.456820 3.4:-71384522 MS.gene031879:CDS
CGAACGTCATTCACAAGCTT+GGG 0.457577 3.4:-71384521 MS.gene031879:CDS
CCATTATTTGTAGGAAGATA+GGG 0.460921 3.4:+71386593 None:intergenic
TACTAATGTTCCAATCACTT+TGG 0.462446 3.4:+71384977 None:intergenic
GAATAGAAGTTTACCTTCCA+AGG 0.465030 3.4:+71384223 None:intergenic
GCCTTCAATTTGGTATGGCT+GGG 0.472061 3.4:-71386968 MS.gene031879:CDS
ACTATTTCATCCTTTGGTGG+TGG 0.474759 3.4:+71383909 None:intergenic
TTAGGAGAAAATCTCTACCT+TGG 0.484234 3.4:-71384240 MS.gene031879:CDS
TCCCAGCCATACCAAATTGA+AGG 0.485278 3.4:+71386967 None:intergenic
CCAAGCTTGTGAATGACGTT+CGG 0.489225 3.4:+71384522 None:intergenic
GCAAGAACAAAGGTGATAGA+AGG 0.493703 3.4:+71386295 None:intergenic
ACAAGCTTGGGCCATTGGCT+GGG 0.496572 3.4:-71384509 MS.gene031879:CDS
CGCAAGAGCGATCACGGCCA+TGG 0.501928 3.4:+71386875 None:intergenic
GAGAAAATCTCTACCTTGGA+AGG 0.506053 3.4:-71384236 MS.gene031879:intron
TTCTTAACCATGGGATGAGT+CGG 0.506248 3.4:-71386923 MS.gene031879:CDS
CCTTTGCATTCTTTCTCGAA+AGG 0.508241 3.4:-71386851 MS.gene031879:intron
ACCACCAAAGGATGAAATAG+TGG 0.511596 3.4:-71383907 MS.gene031879:CDS
TTATATACTAATGGGTTGTG+TGG 0.516614 3.4:-71384829 MS.gene031879:CDS
GATTGGCCTTCAATTTGGTA+TGG 0.517880 3.4:-71386973 MS.gene031879:CDS
AGAGTTGTATGTAGCAATAA+CGG 0.519160 3.4:-71383859 MS.gene031879:CDS
GGAACATTAGTAACCTTTGG+TGG 0.522273 3.4:-71384966 MS.gene031879:CDS
GGTAAAGATATTCTTAACCA+TGG 0.524404 3.4:-71386933 MS.gene031879:CDS
AAAGAGCACCAGCAGTTTGG+TGG 0.526873 3.4:+71384850 None:intergenic
TGCATACTATGTTCAAGGGC+TGG 0.528687 3.4:-71384346 MS.gene031879:CDS
AGCAACTGCGGTGGCACTTG+TGG 0.528868 3.4:-71384545 MS.gene031879:CDS
GATTAACAAACCGTGTAAAG+AGG 0.530802 3.4:+71384469 None:intergenic
ATTGGCAACCTTGATATGCC+TGG 0.532302 3.4:-71384581 MS.gene031879:CDS
TCCTCTTCAATGGTTGATGA+TGG 0.533378 3.4:+71384005 None:intergenic
TTCCTACAAATAATGGTGCT+GGG 0.536786 3.4:-71386586 MS.gene031879:CDS
AAAGGGCGCAAGAGCGATCA+CGG 0.538018 3.4:+71386869 None:intergenic
TCTCATAACCACCAAACTGC+TGG 0.538585 3.4:-71384858 MS.gene031879:CDS
CTTTCGAGAAAGAATGCAAA+GGG 0.539350 3.4:+71386852 None:intergenic
GTAAAGATATTCTTAACCAT+GGG 0.539542 3.4:-71386932 MS.gene031879:CDS
ATACCCAGCAGAGCTATCAT+TGG 0.541804 3.4:-71384599 MS.gene031879:CDS
TCCTCCCGCCAGGCATATCA+AGG 0.553579 3.4:+71384573 None:intergenic
AGGCCTTTATACAGTTGTGT+GGG 0.555364 3.4:-71384066 MS.gene031879:CDS
GAATGGAAAATGTTGAATCC+AGG 0.556275 3.4:+71384915 None:intergenic
CATTAGCAATGCACCACCAA+AGG 0.562707 3.4:+71384953 None:intergenic
ACCAAAGCTTCACTTACTTG+GGG 0.562713 3.4:-71386366 MS.gene031879:CDS
ATGGCAATTTACAAAGGACC+TGG 0.570452 3.4:-71384933 MS.gene031879:CDS
AGCAGTTTGGTGGTTATGAG+AGG 0.571414 3.4:+71384860 None:intergenic
CATCGTTTATCGCAATGCCA+TGG 0.574845 3.4:-71386892 MS.gene031879:CDS
GTTGGAGCGTCTTAAATGCA+AGG 0.579943 3.4:-71385015 MS.gene031879:CDS
GCAACCTTGATATGCCTGGC+GGG 0.580921 3.4:-71384577 MS.gene031879:CDS
ACCATCATCAACCATTGAAG+AGG 0.583628 3.4:-71384006 MS.gene031879:CDS
TAGGCCTTTATACAGTTGTG+TGG 0.586303 3.4:-71384067 MS.gene031879:CDS
GGAAAACCAACCACCACCAA+AGG 0.591854 3.4:-71383919 MS.gene031879:CDS
GGAGCTGTTATCATTGCACT+AGG 0.597039 3.4:-71384086 MS.gene031879:CDS
GCTCTATGCTCCTCTTTACA+CGG 0.606205 3.4:-71384479 MS.gene031879:intron
AACAAAGGTGATAGAAGGCA+CGG 0.609683 3.4:+71386300 None:intergenic
TTGCTAATGGCAATTTACAA+AGG 0.610174 3.4:-71384939 MS.gene031879:CDS
ACCTTGATATGCCTGGCGGG+AGG 0.628044 3.4:-71384574 MS.gene031879:CDS
TTGCCAATGATAGCTCTGCT+GGG 0.631474 3.4:+71384596 None:intergenic
GCAACGATGATCATGCAAAG+AGG 0.634093 3.4:+71384282 None:intergenic
GAATTGCATACTATGTTCAA+GGG 0.635972 3.4:-71384350 MS.gene031879:CDS
ACACGAACCGACTCATCCCA+TGG 0.641263 3.4:+71386916 None:intergenic
GAGCCTATAATCCCAGCCAA+TGG 0.644235 3.4:+71384498 None:intergenic
GGCCTTTATACAGTTGTGTG+GGG 0.644769 3.4:-71384065 MS.gene031879:CDS
GAAGATGACTGCAAGAACAA+AGG 0.648455 3.4:+71386285 None:intergenic
CCTTTCGAGAAAGAATGCAA+AGG 0.654671 3.4:+71386851 None:intergenic
GGGAGGAGCACAAGCAACTG+CGG 0.664526 3.4:-71384557 MS.gene031879:CDS
AGGAGCACAAGCAACTGCGG+TGG 0.670180 3.4:-71384554 MS.gene031879:CDS
GGGCTGGTGATGCAAATGAG+AGG 0.671027 3.4:-71384330 MS.gene031879:CDS
GGCAACCTTGATATGCCTGG+CGG 0.688953 3.4:-71384578 MS.gene031879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTCAATTTTTTGTTT+AGG - chr3.4:71385858-71385877 MS.gene031879:intron 10.0%
!!! CTTTAACTTATATATTAATA+CGG + chr3.4:71385060-71385079 None:intergenic 10.0%
!!! TTTAACTTATATATTAATAC+GGG + chr3.4:71385059-71385078 None:intergenic 10.0%
!! AGTAAAACTTATTAATAATC+AGG - chr3.4:71386719-71386738 MS.gene031879:intron 15.0%
!! AGTATTATTTAATTATCTGA+TGG + chr3.4:71384808-71384827 None:intergenic 15.0%
!! ATCAGTTTCTTAATTTATAT+AGG - chr3.4:71386507-71386526 MS.gene031879:intron 15.0%
!! TCAGTTTCTTAATTTATATA+GGG - chr3.4:71386508-71386527 MS.gene031879:intron 15.0%
!! TTAACTTATATATTAATACG+GGG + chr3.4:71385058-71385077 None:intergenic 15.0%
!!! AAAAAATAATAATTTTGGTG+TGG - chr3.4:71385280-71385299 MS.gene031879:intron 15.0%
!!! AAAGTTATTTAATGATTTTC+AGG - chr3.4:71384256-71384275 MS.gene031879:CDS 15.0%
!!! ACTTTTTTCTATAAATTTTG+TGG - chr3.4:71385423-71385442 MS.gene031879:intron 15.0%
!!! ATTATTTCTAAATTGTTTGT+GGG - chr3.4:71386243-71386262 MS.gene031879:intron 15.0%
!!! TATTATTTCTAAATTGTTTG+TGG - chr3.4:71386242-71386261 MS.gene031879:intron 15.0%
!!! TTATTTTAATGAGCTTATAA+CGG + chr3.4:71385764-71385783 None:intergenic 15.0%
!!! TTTTACTCATATATTAGTAA+AGG + chr3.4:71385120-71385139 None:intergenic 15.0%
!! AATTAACCATGTAATTAACA+AGG + chr3.4:71384490-71384509 None:intergenic 20.0%
!! ATTATCTACATAAGTATTTG+CGG + chr3.4:71384358-71384377 None:intergenic 20.0%
!! GAAATAAGCTACATAATTTA+CGG - chr3.4:71385474-71385493 MS.gene031879:intron 20.0%
!! TGATATTATTGCTGTAAATT+TGG - chr3.4:71386955-71386974 MS.gene031879:CDS 20.0%
!!! ACAGCAATAATATCAATTTT+GGG + chr3.4:71386950-71386969 None:intergenic 20.0%
!!! ATTCAATTTTTTGTTTAGGT+TGG - chr3.4:71385862-71385881 MS.gene031879:intron 20.0%
!!! TAATCTAGAAATCTGATTTT+TGG + chr3.4:71383864-71383883 None:intergenic 20.0%
!!! TACAGCAATAATATCAATTT+TGG + chr3.4:71386951-71386970 None:intergenic 20.0%
!!! TAGTTAAGTGTTTTAAGAAT+TGG + chr3.4:71386174-71386193 None:intergenic 20.0%
!!! TTTTATAATTAAGATCGAAG+TGG - chr3.4:71385683-71385702 MS.gene031879:intron 20.0%
!!! TTTTTCTATAAATTTTGTGG+CGG - chr3.4:71385426-71385445 MS.gene031879:intron 20.0%
! AAACCATATCTCTTAATGAT+TGG - chr3.4:71383905-71383924 MS.gene031879:CDS 25.0%
! AATTTAGAGAGACTCAAATA+CGG + chr3.4:71384727-71384746 None:intergenic 25.0%
! ACATGAAATCTATGTAAACT+AGG - chr3.4:71385534-71385553 MS.gene031879:intron 25.0%
! GCTTATTTCGTAAATCATTA+AGG + chr3.4:71385463-71385482 None:intergenic 25.0%
! GTAAAGATATTCTTAACCAT+GGG - chr3.4:71383963-71383982 MS.gene031879:CDS 25.0%
! GTAATGTTTGGTAAAATTAG+TGG - chr3.4:71385616-71385635 MS.gene031879:intron 25.0%
! GTTAAAAGAGATCAATCAAA+TGG - chr3.4:71384843-71384862 MS.gene031879:CDS 25.0%
! TCTTAACCTTGTTAATTACA+TGG - chr3.4:71384481-71384500 MS.gene031879:CDS 25.0%
!! ATCTTCTTTCTACATTTTAC+AGG - chr3.4:71386093-71386112 MS.gene031879:intron 25.0%
!! GAGATTTTCTCCTAATAAAA+AGG + chr3.4:71386650-71386669 None:intergenic 25.0%
!! TAACACAATTTTGCCAAAAT+AGG + chr3.4:71384435-71384454 None:intergenic 25.0%
!!! AATTTTAATGCAGTCGATAA+CGG - chr3.4:71386266-71386285 MS.gene031879:intron 25.0%
AAATTTAGATGAACACAAGC+AGG - chr3.4:71384742-71384761 MS.gene031879:intron 30.0%
AACATAACATGAGTTAATGC+CGG - chr3.4:71385570-71385589 MS.gene031879:intron 30.0%
AATTAACGTATATGATCACG+AGG - chr3.4:71386201-71386220 MS.gene031879:intron 30.0%
AATTTAGATGAACACAAGCA+GGG - chr3.4:71384743-71384762 MS.gene031879:intron 30.0%
ACCATTATTTGTAGGAAGAT+AGG + chr3.4:71384306-71384325 None:intergenic 30.0%
AGAGTTGTATGTAGCAATAA+CGG - chr3.4:71387036-71387055 MS.gene031879:CDS 30.0%
ATATAGGGAATAGTTAGTTC+AGG - chr3.4:71386523-71386542 MS.gene031879:intron 30.0%
ATGTTATGTTTAACCAACCA+GGG + chr3.4:71385560-71385579 None:intergenic 30.0%
ATTGGAACATTAGTAACCTT+TGG - chr3.4:71385926-71385945 MS.gene031879:intron 30.0%
CCAAACATTACAAATTCAAC+CGG + chr3.4:71385607-71385626 None:intergenic 30.0%
CCATTATTTGTAGGAAGATA+GGG + chr3.4:71384305-71384324 None:intergenic 30.0%
CTAGTTAGTAAGTTAGTTAC+CGG + chr3.4:71384635-71384654 None:intergenic 30.0%
GAATTGCATACTATGTTCAA+GGG - chr3.4:71386545-71386564 MS.gene031879:intron 30.0%
GGTAAAGATATTCTTAACCA+TGG - chr3.4:71383962-71383981 MS.gene031879:CDS 30.0%
GGTGCTCTTTATATACTAAT+GGG - chr3.4:71386058-71386077 MS.gene031879:intron 30.0%
TAAGACGTGTGATTCAATTT+CGG - chr3.4:71384217-71384236 MS.gene031879:intron 30.0%
TACTAATGTTCCAATCACTT+TGG + chr3.4:71385921-71385940 None:intergenic 30.0%
TCAATTCATTGCAGTATCAT+AGG - chr3.4:71386788-71386807 MS.gene031879:intron 30.0%
TGGTGCTCTTTATATACTAA+TGG - chr3.4:71386057-71386076 MS.gene031879:intron 30.0%
TTAAAAGCTGTTGCAAAAAC+TGG + chr3.4:71386592-71386611 None:intergenic 30.0%
TTACATGGTTAATTATGACC+AGG - chr3.4:71384496-71384515 MS.gene031879:CDS 30.0%
TTGCTAATGGCAATTTACAA+AGG - chr3.4:71385956-71385975 MS.gene031879:intron 30.0%
! CTTGAAGTTTATGCCTATTT+TGG - chr3.4:71384419-71384438 MS.gene031879:intron 30.0%
! GCAAAATTGTGTTATTCTAC+AGG - chr3.4:71384441-71384460 MS.gene031879:intron 30.0%
!! AATGGTTGATGATGGTAATT+TGG + chr3.4:71386885-71386904 None:intergenic 30.0%
!! TAATGATTTTCAGGAAGAGT+AGG - chr3.4:71384265-71384284 MS.gene031879:CDS 30.0%
!! TTAATGATTGGCCTTCAATT+TGG - chr3.4:71383917-71383936 MS.gene031879:CDS 30.0%
!! TTATATACTAATGGGTTGTG+TGG - chr3.4:71386066-71386085 MS.gene031879:intron 30.0%
!!! TGTTTTAAGAATTGGATCCT+TGG + chr3.4:71386166-71386185 None:intergenic 30.0%
!!! TTTGATTTTGAGTTCCAGAA+TGG + chr3.4:71386000-71386019 None:intergenic 30.0%
AACCAAAGCTTCACTTACTT+GGG - chr3.4:71384528-71384547 MS.gene031879:CDS 35.0%
AGGCCAATCATTAAGAGATA+TGG + chr3.4:71383911-71383930 None:intergenic 35.0%
ATGATCATCGTTGCTTGTTT+GGG - chr3.4:71386622-71386641 MS.gene031879:intron 35.0%
ATTTAGATGAACACAAGCAG+GGG - chr3.4:71384744-71384763 MS.gene031879:intron 35.0%
CATGTTATGTTTAACCAACC+AGG + chr3.4:71385561-71385580 None:intergenic 35.0%
CCCTATCTTCCTACAAATAA+TGG - chr3.4:71384302-71384321 MS.gene031879:CDS 35.0%
CCGGTTGAATTTGTAATGTT+TGG - chr3.4:71385604-71385623 MS.gene031879:intron 35.0%
CTTTCGAGAAAGAATGCAAA+GGG + chr3.4:71384046-71384065 None:intergenic 35.0%
GAATAGAAGTTTACCTTCCA+AGG + chr3.4:71386675-71386694 None:intergenic 35.0%
GAATGGAAAATGTTGAATCC+AGG + chr3.4:71385983-71386002 None:intergenic 35.0%
GATTAACAAACCGTGTAAAG+AGG + chr3.4:71386429-71386448 None:intergenic 35.0%
GGAATTGCATACTATGTTCA+AGG - chr3.4:71386544-71386563 MS.gene031879:intron 35.0%
GGATCATCTATTGCAGTAAT+TGG + chr3.4:71386929-71386948 None:intergenic 35.0%
GTCTGATTCTGAATAGTCTT+TGG + chr3.4:71386861-71386880 None:intergenic 35.0%
TAACCAAAGCTTCACTTACT+TGG - chr3.4:71384527-71384546 MS.gene031879:CDS 35.0%
TGCTTCTTTCTCCAATTTGT+TGG + chr3.4:71387017-71387036 None:intergenic 35.0%
TTAGGAGAAAATCTCTACCT+TGG - chr3.4:71386655-71386674 MS.gene031879:intron 35.0%
TTCCTACAAATAATGGTGCT+GGG - chr3.4:71384309-71384328 MS.gene031879:CDS 35.0%
! GCTTCTTTCTCCAATTTGTT+GGG + chr3.4:71387016-71387035 None:intergenic 35.0%
! GGATTCAACATTTTCCATTC+TGG - chr3.4:71385983-71386002 MS.gene031879:intron 35.0%
! GTGAAGCTTTGGTTAAAAAC+TGG + chr3.4:71384522-71384541 None:intergenic 35.0%
! TGATTTTGTCTCCTCTTCAA+TGG + chr3.4:71386903-71386922 None:intergenic 35.0%
! TGTTTGGGCTCCTTTTTATT+AGG - chr3.4:71386637-71386656 MS.gene031879:intron 35.0%
AACAAAGGTGATAGAAGGCA+CGG + chr3.4:71384598-71384617 None:intergenic 40.0%
AATCTATGTAAACTAGGCCC+TGG - chr3.4:71385540-71385559 MS.gene031879:intron 40.0%
ACCAAAGCTTCACTTACTTG+GGG - chr3.4:71384529-71384548 MS.gene031879:CDS 40.0%
ACCACCAAAGGATGAAATAG+TGG - chr3.4:71386988-71387007 MS.gene031879:CDS 40.0%
ACCATCATCAACCATTGAAG+AGG - chr3.4:71386889-71386908 MS.gene031879:CDS 40.0%
ACGTATATGATCACGAGGTT+TGG - chr3.4:71386206-71386225 MS.gene031879:intron 40.0%
ACTATTTCATCCTTTGGTGG+TGG + chr3.4:71386989-71387008 None:intergenic 40.0%
ACTGTTTGAGCTTGTGTTCA+GGG + chr3.4:71385338-71385357 None:intergenic 40.0%
AGGCCTTTATACAGTTGTGT+GGG - chr3.4:71386829-71386848 MS.gene031879:intron 40.0%
AGTATCATTGGTCGAACTAC+TGG + chr3.4:71386131-71386150 None:intergenic 40.0%
ATCCCAGCACCATTATTTGT+AGG + chr3.4:71384314-71384333 None:intergenic 40.0%
ATGGCAATTTACAAAGGACC+TGG - chr3.4:71385962-71385981 MS.gene031879:intron 40.0%
ATGGCTGGGAATTACATCTT+TGG - chr3.4:71383941-71383960 MS.gene031879:CDS 40.0%
CATGATCATCGTTGCTTGTT+TGG - chr3.4:71386621-71386640 MS.gene031879:intron 40.0%
CCTTTCGAGAAAGAATGCAA+AGG + chr3.4:71384047-71384066 None:intergenic 40.0%
CCTTTGCATTCTTTCTCGAA+AGG - chr3.4:71384044-71384063 MS.gene031879:CDS 40.0%
CTTCCTACAAATAATGGTGC+TGG - chr3.4:71384308-71384327 MS.gene031879:CDS 40.0%
GAAGATGACTGCAAGAACAA+AGG + chr3.4:71384613-71384632 None:intergenic 40.0%
GAGAAAATCTCTACCTTGGA+AGG - chr3.4:71386659-71386678 MS.gene031879:intron 40.0%
GCAAGAACAAAGGTGATAGA+AGG + chr3.4:71384603-71384622 None:intergenic 40.0%
GGAACATTAGTAACCTTTGG+TGG - chr3.4:71385929-71385948 MS.gene031879:intron 40.0%
GTATCATTGGTCGAACTACT+GGG + chr3.4:71386130-71386149 None:intergenic 40.0%
TACTGTTTGAGCTTGTGTTC+AGG + chr3.4:71385339-71385358 None:intergenic 40.0%
TAGGCCTTTATACAGTTGTG+TGG - chr3.4:71386828-71386847 MS.gene031879:intron 40.0%
TCCACTATTTCATCCTTTGG+TGG + chr3.4:71386992-71387011 None:intergenic 40.0%
TTCCCCACACAACTGTATAA+AGG + chr3.4:71386835-71386854 None:intergenic 40.0%
TTCTTAACCATGGGATGAGT+CGG - chr3.4:71383972-71383991 MS.gene031879:CDS 40.0%
TTGTTCTTGCAGTCATCTTC+CGG - chr3.4:71384613-71384632 MS.gene031879:CDS 40.0%
! AATAGTGGAGCCCAACAAAT+TGG - chr3.4:71387003-71387022 MS.gene031879:CDS 40.0%
! AGCGATGAAAATTTAGAGCG+AGG - chr3.4:71384121-71384140 MS.gene031879:intron 40.0%
!! AAGATAGGGAGTGTCATCTT+TGG + chr3.4:71384291-71384310 None:intergenic 40.0%
!! GATTGGCCTTCAATTTGGTA+TGG - chr3.4:71383922-71383941 MS.gene031879:CDS 40.0%
!! TATAAAGAGCACCAGCAGTT+TGG + chr3.4:71386051-71386070 None:intergenic 40.0%
!! TCCTCTTCAATGGTTGATGA+TGG + chr3.4:71386893-71386912 None:intergenic 40.0%
AATGCCGGATGACTTAATGC+CGG - chr3.4:71385585-71385604 MS.gene031879:intron 45.0%
ATACCCAGCAGAGCTATCAT+TGG - chr3.4:71386296-71386315 MS.gene031879:CDS 45.0%
ATTGGCAACCTTGATATGCC+TGG - chr3.4:71386314-71386333 MS.gene031879:CDS 45.0%
CATCGTTTATCGCAATGCCA+TGG - chr3.4:71384003-71384022 MS.gene031879:CDS 45.0%
CATTAGCAATGCACCACCAA+AGG + chr3.4:71385945-71385964 None:intergenic 45.0%
CCAAGCTTGTGAATGACGTT+CGG + chr3.4:71386376-71386395 None:intergenic 45.0%
CCAATGATACTTGATCGAGC+AGG - chr3.4:71386140-71386159 MS.gene031879:intron 45.0%
CCTGCTCGATCAAGTATCAT+TGG + chr3.4:71386143-71386162 None:intergenic 45.0%
CGAACGTCATTCACAAGCTT+GGG - chr3.4:71386374-71386393 MS.gene031879:CDS 45.0%
CGAAGTCAAGCCAAAGTGAT+TGG - chr3.4:71385908-71385927 MS.gene031879:intron 45.0%
CTGGACTCACAATATCAGTG+AGG - chr3.4:71384772-71384791 MS.gene031879:intron 45.0%
GATTTGAACTGGGTATGGTG+TGG + chr3.4:71385312-71385331 None:intergenic 45.0%
GCAACGATGATCATGCAAAG+AGG + chr3.4:71386616-71386635 None:intergenic 45.0%
GCCTTCAATTTGGTATGGCT+GGG - chr3.4:71383927-71383946 MS.gene031879:CDS 45.0%
GCTCTATGCTCCTCTTTACA+CGG - chr3.4:71386416-71386435 MS.gene031879:intron 45.0%
GCTTTGGTTAAAAACTGGCC+TGG + chr3.4:71384517-71384536 None:intergenic 45.0%
GGAGCTGTTATCATTGCACT+AGG - chr3.4:71386809-71386828 MS.gene031879:intron 45.0%
GGCCTTTATACAGTTGTGTG+GGG - chr3.4:71386830-71386849 MS.gene031879:intron 45.0%
GGCTCCACTATTTCATCCTT+TGG + chr3.4:71386995-71387014 None:intergenic 45.0%
TATGTAAACTAGGCCCTGGT+TGG - chr3.4:71385544-71385563 MS.gene031879:intron 45.0%
TCAACCGGCATTAAGTCATC+CGG + chr3.4:71385592-71385611 None:intergenic 45.0%
TCCCAGCCATACCAAATTGA+AGG + chr3.4:71383931-71383950 None:intergenic 45.0%
TCCCCAAGTAAGTGAAGCTT+TGG + chr3.4:71384533-71384552 None:intergenic 45.0%
TCTCATAACCACCAAACTGC+TGG - chr3.4:71386037-71386056 MS.gene031879:intron 45.0%
TGCATACTATGTTCAAGGGC+TGG - chr3.4:71386549-71386568 MS.gene031879:intron 45.0%
TTTGAGCTTGTGTTCAGGGA+CGG + chr3.4:71385334-71385353 None:intergenic 45.0%
! AGCAGTTTGGTGGTTATGAG+AGG + chr3.4:71386038-71386057 None:intergenic 45.0%
! GTTGGAGCGTCTTAAATGCA+AGG - chr3.4:71385880-71385899 MS.gene031879:intron 45.0%
! TTCAGGGACGGATTTGAACT+GGG + chr3.4:71385322-71385341 None:intergenic 45.0%
! TTGCCAATGATAGCTCTGCT+GGG + chr3.4:71386302-71386321 None:intergenic 45.0%
!! CACGAGGTTTGGTTCTTATG+TGG - chr3.4:71386217-71386236 MS.gene031879:intron 45.0%
!! CTTTGGTGGTGCATTGCTAA+TGG - chr3.4:71385943-71385962 MS.gene031879:intron 45.0%
!! TTTCATCCTTTGGTGGTGGT+TGG + chr3.4:71386985-71387004 None:intergenic 45.0%
!! ATTAAACTAATTATTATATA+TGG + chr3.4:71384679-71384698 None:intergenic 5.0%
!! TAAGAATTAAAAAAAAAAAA+AGG - chr3.4:71385092-71385111 MS.gene031879:intron 5.0%
!!! AAGTAAAAAAATAATAATTT+TGG - chr3.4:71385275-71385294 MS.gene031879:intron 5.0%
ATACTTGATCGAGCAGGCCA+AGG - chr3.4:71386146-71386165 MS.gene031879:intron 50.0%
CATTCACAAGCTTGGGCCAT+TGG - chr3.4:71386381-71386400 MS.gene031879:intron 50.0%
CCGAACGTCATTCACAAGCT+TGG - chr3.4:71386373-71386392 MS.gene031879:CDS 50.0%
GAGCCTATAATCCCAGCCAA+TGG + chr3.4:71386400-71386419 None:intergenic 50.0%
GGAAAACCAACCACCACCAA+AGG - chr3.4:71386976-71386995 MS.gene031879:CDS 50.0%
GGCCTTCAATTTGGTATGGC+TGG - chr3.4:71383926-71383945 MS.gene031879:CDS 50.0%
GGTCGAACTACTGGGTCATT+AGG + chr3.4:71386122-71386141 None:intergenic 50.0%
GTCCATGTTCGTCTTGTGCA+GGG + chr3.4:71386746-71386765 None:intergenic 50.0%
TAGATGAACACAAGCAGGGG+CGG - chr3.4:71384747-71384766 MS.gene031879:intron 50.0%
TGTCCATGTTCGTCTTGTGC+AGG + chr3.4:71386747-71386766 None:intergenic 50.0%
! GGACGGATTTGAACTGGGTA+TGG + chr3.4:71385317-71385336 None:intergenic 50.0%
! GTTCAGGGACGGATTTGAAC+TGG + chr3.4:71385323-71385342 None:intergenic 50.0%
! GTTGCCAATGATAGCTCTGC+TGG + chr3.4:71386303-71386322 None:intergenic 50.0%
!! AAAGAGCACCAGCAGTTTGG+TGG + chr3.4:71386048-71386067 None:intergenic 50.0%
GCAACCTTGATATGCCTGGC+GGG - chr3.4:71386318-71386337 MS.gene031879:CDS 55.0%
GGCAACCTTGATATGCCTGG+CGG - chr3.4:71386317-71386336 MS.gene031879:CDS 55.0%
GTCCCTGCACAAGACGAACA+TGG - chr3.4:71386741-71386760 MS.gene031879:intron 55.0%
! AAAGGGCGCAAGAGCGATCA+CGG + chr3.4:71384029-71384048 None:intergenic 55.0%
! ACAAGCTTGGGCCATTGGCT+GGG - chr3.4:71386386-71386405 MS.gene031879:intron 55.0%
! ACACGAACCGACTCATCCCA+TGG + chr3.4:71383982-71384001 None:intergenic 55.0%
! GGGCCATTGGCTGGGATTAT+AGG - chr3.4:71386394-71386413 MS.gene031879:intron 55.0%
! GGGCTGGTGATGCAAATGAG+AGG - chr3.4:71386565-71386584 MS.gene031879:intron 55.0%
AACACAAGCAGGGGCGGATC+TGG - chr3.4:71384753-71384772 MS.gene031879:intron 60.0%
ACCTTGATATGCCTGGCGGG+AGG - chr3.4:71386321-71386340 MS.gene031879:CDS 60.0%
AGCAACTGCGGTGGCACTTG+TGG - chr3.4:71386350-71386369 MS.gene031879:CDS 60.0%
CACAAGCTTGGGCCATTGGC+TGG - chr3.4:71386385-71386404 MS.gene031879:intron 60.0%
TCCTCCCGCCAGGCATATCA+AGG + chr3.4:71386325-71386344 None:intergenic 60.0%
! AGGAGCACAAGCAACTGCGG+TGG - chr3.4:71386341-71386360 MS.gene031879:CDS 60.0%
! GGGAGGAGCACAAGCAACTG+CGG - chr3.4:71386338-71386357 MS.gene031879:CDS 60.0%
CGCAAGAGCGATCACGGCCA+TGG + chr3.4:71384023-71384042 None:intergenic 65.0%
TTGCTTGTGCTCCTCCCGCC+AGG + chr3.4:71386335-71386354 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 71383854 71387063 71383854 ID=MS.gene031879
chr3.4 mRNA 71383854 71387063 71383854 ID=MS.gene031879.t1;Parent=MS.gene031879
chr3.4 exon 71386852 71387063 71386852 ID=MS.gene031879.t1.exon1;Parent=MS.gene031879.t1
chr3.4 CDS 71386852 71387063 71386852 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71386577 71386639 71386577 ID=MS.gene031879.t1.exon2;Parent=MS.gene031879.t1
chr3.4 CDS 71386577 71386639 71386577 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71386283 71386399 71386283 ID=MS.gene031879.t1.exon3;Parent=MS.gene031879.t1
chr3.4 CDS 71386283 71386399 71386283 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71384803 71385037 71384803 ID=MS.gene031879.t1.exon4;Parent=MS.gene031879.t1
chr3.4 CDS 71384803 71385037 71384803 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71384480 71384638 71384480 ID=MS.gene031879.t1.exon5;Parent=MS.gene031879.t1
chr3.4 CDS 71384480 71384638 71384480 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71384237 71384388 71384237 ID=MS.gene031879.t1.exon6;Parent=MS.gene031879.t1
chr3.4 CDS 71384237 71384388 71384237 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
chr3.4 exon 71383854 71384115 71383854 ID=MS.gene031879.t1.exon7;Parent=MS.gene031879.t1
chr3.4 CDS 71383854 71384115 71383854 ID=cds.MS.gene031879.t1;Parent=MS.gene031879.t1
Gene Sequence

>MS.gene031879

ATGAGTGCCAAAAATCAGATTTCTAGATTATTTCTTCTATTTATTAATGCTAAACCATATCTCTTAATGATTGGCCTTCAATTTGGTATGGCTGGGAATTACATCTTTGGTAAAGATATTCTTAACCATGGGATGAGTCGGTTCGTGTTCATCGTTTATCGCAATGCCATGGCCGTGATCGCTCTTGCGCCCTTTGCATTCTTTCTCGAAAGGTATCTTAATGTGTTAGTCACGACTACTCTTTTACTATCAGAACAAAATTAAATTAGCGATGAAAATTTAGAGCGAGGAAAAAAGTGAATTTTTCTCTCTCTAACTCTGTCACTAAATTTAGTAACGAGAAGAAATCTATAATTATATCAATAAGACGTGTGATTCAATTTCGGTATTACATTTCTAAAAAAAGTTATTTAATGATTTTCAGGAAGAGTAGGCCAAAGATGACACTCCCTATCTTCCTACAAATAATGGTGCTGGGATTTCTAGAGTAATGATCTAAGACCGCAAATACTTATGTAGATAATGATCTAGCTAAAAGAATACAAATATATTTAATTACTAATTACTTGAAGTTTATGCCTATTTTGGCAAAATTGTGTTATTCTACAGGATATGAGTTAATTATCATCTTAACCTTGTTAATTACATGGTTAATTATGACCAGGCCAGTTTTTAACCAAAGCTTCACTTACTTGGGGATGAAGTATACTTCAGCTTCATTCACATCTGCTATTATGAATGCCGTGCCTTCTATCACCTTTGTTCTTGCAGTCATCTTCCGGTAACTAACTTACTAACTAGAATTAATCAATTTTATTTCATCCATATATAATAATTAGTTTAATTAAAGTGATACTAATAATCATTTTACCGTATTTGAGTCTCTCTAAATTTAGATGAACACAAGCAGGGGCGGATCTGGACTCACAATATCAGTGAGGCAAAAAAATTCCATCAGATAATTAAATAATACTAAATTTAATAAAGACGTTAAAAGAGATCAATCAAATGGTCTAGCAGAATACTCGCGTTTTTTTTGTTTAAGCAAGTCGCAATTGCGTAGAAATTAAAAAATAAAAAGATCTATGTATTGATATATGAATAAAAATATAGACAGATGAACAAATTGCATAAAACATTATTTATGTATTAAATACGAGTAAAAATATAGACATGTGTATAAATTAAAAATAAAATCGATCCCCGTATTAATATATAAGTTAAAGTATAGACACATGTAAGAATTAAAAAAAAAAAAAGGTTCCTTTACTAATATATGAGTAAAAATACAGACATGTGTATATATTAACAAAAAAAAAAGTTCACGTATTAATATATGAATAAAAATATAGACACATGTATAAATATAAAAGATGTTTGTATTAATATATGAATAAAATTACAAAGTAAACTAATAAAAAAAGTAAAAAAATAATAATTTTGGTGTGGCACTTGCCACACCATACCCAGTTCAAATCCGTCCCTGAACACAAGCTCAAACAGTACTTGCGTAGTTATTTTTATATTTAAACAAAATTTAACACATGCTCAAGTTTGATAAGTAATGACACTTTTTTCTATAAATTTTGTGGCGGCTTACATCGTACCTTAATGATTTACGAAATAAGCTACATAATTTACGGAAAAAATGTCATTATTTATGTAAAATATTTCAATAGAACATGAAATCTATGTAAACTAGGCCCTGGTTGGTTAAACATAACATGAGTTAATGCCGGATGACTTAATGCCGGTTGAATTTGTAATGTTTGGTAAAATTAGTGGTTGAAATAGCTTATAAATATGAAATGATACTAAAAAATGTGCATTTTTATAATTAAGATCGAAGTGGTAAAATAGAGATAAAAAGTGATAAGCTTTAAGCTACTTGACATAACTTATCAAAACCGTTATAAGCTCATTAAAATAAACTATAATCTCATGTAAAAATGACAATTACTATACAGATTTTTTTTAATGATACGAACTTATAAGCTATAAGTCATAAATTCAATTTTTTGTTTAGGTTGGAGCGTCTTAAATGCAAGGAAATTCGAAGTCAAGCCAAAGTGATTGGAACATTAGTAACCTTTGGTGGTGCATTGCTAATGGCAATTTACAAAGGACCTGGATTCAACATTTTCCATTCTGGAACTCAAAATCAAAATGCAACTAACGAATCCTCTCATAACCACCAAACTGCTGGTGCTCTTTATATACTAATGGGTTGTGTGGCTTTATCTTCTTTCTACATTTTACAGGTAACCTAATGACCCAGTAGTTCGACCAATGATACTTGATCGAGCAGGCCAAGGATCCAATTCTTAAAACACTTAACTAATTAATAAATTAACGTATATGATCACGAGGTTTGGTTCTTATGTGGATTATTATTTCTAAATTGTTTGTGGGAATTTTAATGCAGTCGATAACGGTAAAAGCATACCCAGCAGAGCTATCATTGGCAACCTTGATATGCCTGGCGGGAGGAGCACAAGCAACTGCGGTGGCACTTGTGGCCGAACGTCATTCACAAGCTTGGGCCATTGGCTGGGATTATAGGCTCTATGCTCCTCTTTACACGGTTTGTTAATCAGTTAATTAGTTTGTCATTCACAAGCTTAGTTAGAAAAAAATTCAAATAATTTTCTTAATCAGTTTCTTAATTTATATAGGGAATAGTTAGTTCAGGAATTGCATACTATGTTCAAGGGCTGGTGATGCAAATGAGAGGTCCAGTTTTTGCAACAGCTTTTAATCCTCTTTGCATGATCATCGTTGCTTGTTTGGGCTCCTTTTTATTAGGAGAAAATCTCTACCTTGGAAGGTAAACTTCTATTCTTAATTTCTCAAGTTATGTTTAACAGTAAAACTTATTAATAATCAGGTCCCTGCACAAGACGAACATGGACACATTTTATATAATTTATGTTTTCAATTCATTGCAGTATCATAGGAGCTGTTATCATTGCACTAGGCCTTTATACAGTTGTGTGGGGAAAAGCCAAAGACTATTCAGAATCAGACACCAAATTACCATCATCAACCATTGAAGAGGAGACAAAATCAATGCCAATTACTGCAATAGATGATCCCAAAATTGATATTATTGCTGTAAATTTGGAAAACCAACCACCACCAAAGGATGAAATAGTGGAGCCCAACAAATTGGAGAAAGAAGCAGAGTTGTATGTAGCAATAACGGTTTAA
Protein sequence

>MS.gene031879.t1

MSAKNQISRLFLLFINAKPYLLMIGLQFGMAGNYIFGKDILNHGMSRFVFIVYRNAMAVIALAPFAFFLERKSRPKMTLPIFLQIMVLGFLEPVFNQSFTYLGMKYTSASFTSAIMNAVPSITFVLAVIFRLERLKCKEIRSQAKVIGTLVTFGGALLMAIYKGPGFNIFHSGTQNQNATNESSHNHQTAGALYILMGCVALSSFYILQSITVKAYPAELSLATLICLAGGAQATAVALVAERHSQAWAIGWDYRLYAPLYTGIVSSGIAYYVQGLVMQMRGPVFATAFNPLCMIIVACLGSFLLGENLYLGSIIGAVIIALGLYTVVWGKAKDYSESDTKLPSSTIEEETKSMPITAIDDPKIDIIAVNLENQPPPKDEIVEPNKLEKEAELYVAITV