Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033111.t1 | XP_024638816.1 | 98.9 | 280 | 3 | 0 | 3 | 282 | 2 | 281 | 1.00E-147 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033111.t1 | Q43157 | 88.0 | 284 | 28 | 2 | 5 | 282 | 2 | 285 | 6.5e-135 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033111.t1 | A0A072V1G6 | 98.9 | 280 | 3 | 0 | 3 | 282 | 2 | 281 | 7.4e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033111 | MS.gene71518 | PPI |
| MS.gene033111 | MS.gene060454 | PPI |
| MS.gene033111 | MS.gene62532 | PPI |
| MS.gene033111 | MS.gene040340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033111.t1 | MTR_4g108800 | 98.929 | 280 | 3 | 0 | 3 | 282 | 2 | 281 | 0.0 | 561 |
| MS.gene033111.t1 | MTR_0937s0020 | 48.677 | 189 | 87 | 2 | 26 | 214 | 289 | 467 | 6.46e-49 | 173 |
| MS.gene033111.t1 | MTR_7g029630 | 39.171 | 217 | 124 | 3 | 61 | 274 | 7 | 218 | 1.06e-45 | 154 |
| MS.gene033111.t1 | MTR_7g029630 | 37.008 | 127 | 76 | 2 | 96 | 219 | 15 | 140 | 1.55e-20 | 86.7 |
| MS.gene033111.t1 | MTR_3g449340 | 34.058 | 138 | 73 | 4 | 124 | 253 | 1 | 128 | 6.88e-12 | 62.8 |
| MS.gene033111.t1 | MTR_4g089175 | 83.333 | 30 | 5 | 0 | 78 | 107 | 22 | 51 | 8.15e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033111.t1 | AT5G61410 | 85.714 | 280 | 40 | 0 | 3 | 282 | 2 | 281 | 2.02e-179 | 495 |
| MS.gene033111.t1 | AT5G61410 | 85.714 | 280 | 40 | 0 | 3 | 282 | 2 | 281 | 2.02e-179 | 495 |
| MS.gene033111.t1 | AT3G01850 | 37.778 | 225 | 131 | 4 | 61 | 281 | 6 | 225 | 9.66e-47 | 156 |
| MS.gene033111.t1 | AT3G01850 | 37.778 | 225 | 131 | 4 | 61 | 281 | 6 | 225 | 9.66e-47 | 156 |
| MS.gene033111.t1 | AT1G63290 | 39.631 | 217 | 123 | 3 | 61 | 274 | 8 | 219 | 9.31e-44 | 149 |
| MS.gene033111.t1 | AT3G01850 | 37.629 | 194 | 112 | 4 | 92 | 281 | 10 | 198 | 2.14e-35 | 126 |
| MS.gene033111.t1 | AT3G01850 | 37.629 | 194 | 112 | 4 | 92 | 281 | 10 | 198 | 2.14e-35 | 126 |
Find 76 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGCCAACTTTGCAAAAT+TGG | 0.109693 | 8.2:-17172109 | MS.gene033111:CDS |
| AGAGGTCCAATAGTAATATT+TGG | 0.187699 | 8.2:+17171885 | None:intergenic |
| CATTCCTTTGTAGCTATAAA+AGG | 0.220868 | 8.2:-17169726 | MS.gene033111:intron |
| GTTGCTGGTTCTGCTGTGTT+TGG | 0.328175 | 8.2:-17169859 | MS.gene033111:CDS |
| CTCTCTAGGGTGTGAATCCT+TGG | 0.328972 | 8.2:-17170317 | MS.gene033111:intron |
| TTGGATTCATGTTGATGTTA+TGG | 0.329699 | 8.2:-17171922 | MS.gene033111:CDS |
| GGAGCTAATGCACTGGTTGC+TGG | 0.334561 | 8.2:-17169874 | MS.gene033111:CDS |
| TTTGTCCCAAATATTACTAT+TGG | 0.352259 | 8.2:-17171891 | MS.gene033111:CDS |
| CTTTGCAAAATTGGGAGAAC+AGG | 0.352968 | 8.2:-17172100 | MS.gene033111:intron |
| TTAGCGGAGTACCAGGGTTT+AGG | 0.354271 | 8.2:+17171270 | None:intergenic |
| TCCGCCAACTTTGCAAAATT+GGG | 0.359542 | 8.2:-17172108 | MS.gene033111:CDS |
| GAGGCCTTTCACACAGAAAC+TGG | 0.388208 | 8.2:+17169678 | None:intergenic |
| AAATCTGGCACCCGCTGATC+TGG | 0.396879 | 8.2:+17171717 | None:intergenic |
| AGCACCTTGTAAGCATTTGC+TGG | 0.401136 | 8.2:+17170270 | None:intergenic |
| GCTCCTGCTTTGATGAAATC+TGG | 0.406074 | 8.2:+17171702 | None:intergenic |
| CCCTGTGACAGATTTACCTT+TGG | 0.408758 | 8.2:-17171844 | MS.gene033111:CDS |
| TAGAGTTGGCTGGTTGTGAT+TGG | 0.411673 | 8.2:-17171941 | MS.gene033111:CDS |
| GAGAAGATTGTGCGTGGAGA+AGG | 0.423151 | 8.2:-17170434 | MS.gene033111:intron |
| CCTTGAGAAAGTGAGAGAAC+GGG | 0.446212 | 8.2:+17173142 | None:intergenic |
| TCTGTAAACCCTGGCTTTGG+TGG | 0.447445 | 8.2:-17170499 | MS.gene033111:CDS |
| GAGGTCCAATAGTAATATTT+GGG | 0.451344 | 8.2:+17171886 | None:intergenic |
| GATTAATTGCACGATGCAAA+TGG | 0.460222 | 8.2:+17171640 | None:intergenic |
| ATTTGGCAGGTGATTGAGGC+TGG | 0.461400 | 8.2:-17169895 | MS.gene033111:intron |
| GGTGCTGGCAGTGGTTGACT+TGG | 0.467221 | 8.2:-17170533 | MS.gene033111:intron |
| AAACTCTGGCCACCAAAGCC+AGG | 0.471474 | 8.2:+17170490 | None:intergenic |
| GCAATAGAATATGTTCTTGA+TGG | 0.472384 | 8.2:-17171245 | MS.gene033111:intron |
| ATTGCACTTAGCGGAGTACC+AGG | 0.474775 | 8.2:+17171263 | None:intergenic |
| ATGTCTGTAAACCCTGGCTT+TGG | 0.475764 | 8.2:-17170502 | MS.gene033111:CDS |
| AAAAGCCTGGGAGCTAAAGC+TGG | 0.477458 | 8.2:-17171299 | MS.gene033111:CDS |
| CAACTCCAGCTTTAGCTCCC+AGG | 0.485580 | 8.2:+17171294 | None:intergenic |
| AAGTTGGCGGAAAGAATAGA+TGG | 0.490752 | 8.2:+17172120 | None:intergenic |
| TGCACGATGCAAATGGATAG+TGG | 0.498424 | 8.2:+17171647 | None:intergenic |
| AAAGTCCATTGATCTGAGAT+TGG | 0.502632 | 8.2:+17173192 | None:intergenic |
| GTGCCAGATTTCATCAAAGC+AGG | 0.505243 | 8.2:-17171705 | MS.gene033111:CDS |
| ACCCTCCAATCTCAGATCAA+TGG | 0.506335 | 8.2:-17173197 | MS.gene033111:CDS |
| GCACCTTGTAAGCATTTGCT+GGG | 0.508474 | 8.2:+17170271 | None:intergenic |
| TATTACTATTGGACCTCTTG+TGG | 0.513189 | 8.2:-17171880 | MS.gene033111:CDS |
| ACATATTCTATTGCACTTAG+CGG | 0.514934 | 8.2:+17171254 | None:intergenic |
| TTTACCTTTGGATGTCCACC+TGG | 0.515412 | 8.2:-17171832 | MS.gene033111:intron |
| TCCAAAGGTAAATCTGTCAC+AGG | 0.515740 | 8.2:+17171843 | None:intergenic |
| CCCGTTCTCTCACTTTCTCA+AGG | 0.523607 | 8.2:-17173142 | MS.gene033111:intron |
| TGTTATTTGGCAGGTGATTG+AGG | 0.527723 | 8.2:-17169899 | MS.gene033111:intron |
| CTTGGCTCTCGATAAAACTC+TGG | 0.531835 | 8.2:+17170476 | None:intergenic |
| ACCTTGAGAAAGTGAGAGAA+CGG | 0.535225 | 8.2:+17173141 | None:intergenic |
| CCTTGGATTGAAGTGGATGG+TGG | 0.541023 | 8.2:-17170300 | MS.gene033111:CDS |
| CTTGGATTGAAGTGGATGGT+GGG | 0.541584 | 8.2:-17170299 | MS.gene033111:CDS |
| TACCCCAGCAAATGCTTACA+AGG | 0.545343 | 8.2:-17170274 | MS.gene033111:intron |
| CTAGGTAAAAGCAGTAGAGT+TGG | 0.552705 | 8.2:-17171955 | MS.gene033111:intron |
| GATTGTAGAACCAGATCAGC+GGG | 0.553131 | 8.2:-17171727 | MS.gene033111:CDS |
| GTAAAAGCAGTAGAGTTGGC+TGG | 0.557874 | 8.2:-17171951 | MS.gene033111:CDS |
| TCCATTGATCTGAGATTGGA+GGG | 0.561639 | 8.2:+17173196 | None:intergenic |
| GGAGCTAAAGATTATGCTGA+AGG | 0.567422 | 8.2:-17169838 | MS.gene033111:intron |
| TTAATTATGTCTGTAAACCC+TGG | 0.567653 | 8.2:-17170508 | MS.gene033111:CDS |
| ATTCATGTTGATGTTATGGA+TGG | 0.568834 | 8.2:-17171918 | MS.gene033111:CDS |
| AACTCTGGCCACCAAAGCCA+GGG | 0.576163 | 8.2:+17170491 | None:intergenic |
| GATCTGAGATTGGAGGGTAG+AGG | 0.576309 | 8.2:+17173202 | None:intergenic |
| CGCAATGCATCAACCACAAG+AGG | 0.585518 | 8.2:+17171867 | None:intergenic |
| TTTCACACAGAAACTGGCTC+AGG | 0.586572 | 8.2:+17169684 | None:intergenic |
| CCACCATCCACTTCAATCCA+AGG | 0.590960 | 8.2:+17170300 | None:intergenic |
| AATACCAGGTGGACATCCAA+AGG | 0.598223 | 8.2:+17171828 | None:intergenic |
| AGAAAGTGAGAGAACGGGGA+CGG | 0.598308 | 8.2:+17173147 | None:intergenic |
| TGAGGCTGGAGCTAATGCAC+TGG | 0.611831 | 8.2:-17169881 | MS.gene033111:CDS |
| GGAAGAGAGAATTCTTGTGA+AGG | 0.611960 | 8.2:+17173168 | None:intergenic |
| GTCCATTGATCTGAGATTGG+AGG | 0.614275 | 8.2:+17173195 | None:intergenic |
| TGTGAATCCTTGGATTGAAG+TGG | 0.621250 | 8.2:-17170307 | MS.gene033111:CDS |
| GAAGAGAGAATTCTTGTGAA+GGG | 0.629086 | 8.2:+17173169 | None:intergenic |
| CAGGAGGAAAATTTCAACTG+TGG | 0.630527 | 8.2:-17172196 | MS.gene033111:CDS |
| GCTGGAGTTGTCCTAAACCC+TGG | 0.635850 | 8.2:-17171281 | MS.gene033111:CDS |
| TTGGATTGAAGTGGATGGTG+GGG | 0.646043 | 8.2:-17170298 | MS.gene033111:CDS |
| AATCCTTGGATTGAAGTGGA+TGG | 0.661026 | 8.2:-17170303 | MS.gene033111:CDS |
| CCAAAGGTAAATCTGTCACA+GGG | 0.662632 | 8.2:+17171844 | None:intergenic |
| TGATTTGAGAAGATTGTGCG+TGG | 0.667135 | 8.2:-17170440 | MS.gene033111:CDS |
| CTTGAGAAAGTGAGAGAACG+GGG | 0.668068 | 8.2:+17173143 | None:intergenic |
| CACCTTGTAAGCATTTGCTG+GGG | 0.672494 | 8.2:+17170272 | None:intergenic |
| TTGCACTTAGCGGAGTACCA+GGG | 0.677738 | 8.2:+17171264 | None:intergenic |
| TGATTGTAGAACCAGATCAG+CGG | 0.686244 | 8.2:-17171728 | MS.gene033111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTTATAATCTTATTA+TGG | - | chr8.2:17172365-17172384 | MS.gene033111:intron | 10.0% |
| !! | TATTATATACTGAAAATAAA+CGG | + | chr8.2:17171736-17171755 | None:intergenic | 10.0% |
| !! | AACAATAAAAATTTAACACA+TGG | + | chr8.2:17171845-17171864 | None:intergenic | 15.0% |
| !! | AATTATAAACAGAATAGAAA+AGG | - | chr8.2:17171944-17171963 | MS.gene033111:CDS | 15.0% |
| !! | ATCTCATAGAAAAAAAAAAA+CGG | + | chr8.2:17172521-17172540 | None:intergenic | 15.0% |
| !! | TTAATATTTAAGAGTTCTAT+TGG | - | chr8.2:17172843-17172862 | MS.gene033111:intron | 15.0% |
| !! | TTTAAAAGTTAAATATGTCT+TGG | - | chr8.2:17171497-17171516 | MS.gene033111:intron | 15.0% |
| !!! | AATATTAATGATGCTATTTA+TGG | - | chr8.2:17171758-17171777 | MS.gene033111:intron | 15.0% |
| !!! | AATTAGCTTAATTTCAAATT+TGG | - | chr8.2:17172220-17172239 | MS.gene033111:intron | 15.0% |
| !!! | ATTTTCAGTATTATGTTATT+TGG | - | chr8.2:17173007-17173026 | MS.gene033111:intron | 15.0% |
| !! | AAAGATTAAATTATGTGAGT+AGG | - | chr8.2:17173114-17173133 | MS.gene033111:intron | 20.0% |
| !! | AAATATAAAATGATTCTACG+AGG | + | chr8.2:17170563-17170582 | None:intergenic | 20.0% |
| !! | AAATGAATTCAAAAAGGAAA+AGG | + | chr8.2:17171704-17171723 | None:intergenic | 20.0% |
| !! | AACAATAATTGAAAAGAAAG+AGG | + | chr8.2:17169807-17169826 | None:intergenic | 20.0% |
| !! | CAGAAAAAATGAATTCAAAA+AGG | + | chr8.2:17171710-17171729 | None:intergenic | 20.0% |
| !! | TAACAAAAAGATATTAAAGC+AGG | + | chr8.2:17170694-17170713 | None:intergenic | 20.0% |
| !! | TCATTCTAAATTATAAGTGA+TGG | + | chr8.2:17172697-17172716 | None:intergenic | 20.0% |
| !! | TGTATTTGACAATTATACAA+AGG | + | chr8.2:17171423-17171442 | None:intergenic | 20.0% |
| !!! | AATCAGAAATTTTCTTTACT+TGG | + | chr8.2:17172464-17172483 | None:intergenic | 20.0% |
| !!! | TTACCAATATTTTTAGAACA+TGG | + | chr8.2:17171916-17171935 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTATGAGATAG+TGG | - | chr8.2:17172523-17172542 | MS.gene033111:intron | 20.0% |
| ! | AAAGTAGTCCTTATATGTTT+GGG | - | chr8.2:17170226-17170245 | MS.gene033111:intron | 25.0% |
| ! | AATTCAATGAACAAAGTTTG+TGG | + | chr8.2:17172930-17172949 | None:intergenic | 25.0% |
| ! | AATTGAAGTCTATCATACAT+AGG | - | chr8.2:17170201-17170220 | MS.gene033111:intron | 25.0% |
| ! | ACCAGAAACTAAAATGAATT+TGG | + | chr8.2:17172015-17172034 | None:intergenic | 25.0% |
| ! | AGAAATATGCTAAAATGACT+TGG | + | chr8.2:17170900-17170919 | None:intergenic | 25.0% |
| ! | ATAATCCCAACATAAAACAT+TGG | - | chr8.2:17172783-17172802 | MS.gene033111:intron | 25.0% |
| ! | ATTGTTAGAATTCAACTTCT+GGG | - | chr8.2:17169821-17169840 | MS.gene033111:intron | 25.0% |
| ! | CAAACACAGTATTAGAATAA+AGG | + | chr8.2:17170255-17170274 | None:intergenic | 25.0% |
| ! | CAGTAGTAAACAAATAATGA+AGG | - | chr8.2:17172900-17172919 | MS.gene033111:intron | 25.0% |
| ! | CTAAGTACTAACATTAGTAA+AGG | - | chr8.2:17171523-17171542 | MS.gene033111:intron | 25.0% |
| ! | CTGATTAAGTTTCTTGATTT+AGG | - | chr8.2:17171595-17171614 | MS.gene033111:intron | 25.0% |
| ! | CTTAATCAGATAAATTCAAC+AGG | + | chr8.2:17171584-17171603 | None:intergenic | 25.0% |
| ! | CTTTATTCTAATACTGTGTT+TGG | - | chr8.2:17170253-17170272 | MS.gene033111:intron | 25.0% |
| ! | TAATCCCAACATAAAACATT+GGG | - | chr8.2:17172784-17172803 | MS.gene033111:intron | 25.0% |
| ! | TATGTATAAAGATGAATACC+AGG | + | chr8.2:17171108-17171127 | None:intergenic | 25.0% |
| ! | TATTGTTAGAATTCAACTTC+TGG | - | chr8.2:17169820-17169839 | MS.gene033111:intron | 25.0% |
| ! | TTATAATCTTATTATGGTGC+TGG | - | chr8.2:17172371-17172390 | MS.gene033111:intron | 25.0% |
| ! | TTCCTTACATAATCTCTAAT+TGG | - | chr8.2:17172572-17172591 | MS.gene033111:intron | 25.0% |
| ! | TTTGTCCCAAATATTACTAT+TGG | - | chr8.2:17171028-17171047 | MS.gene033111:intron | 25.0% |
| !! | AACAATTGAAAGTTACTTTC+AGG | + | chr8.2:17170367-17170386 | None:intergenic | 25.0% |
| !! | AGAATTAGCTAATTTGAAGT+TGG | + | chr8.2:17170031-17170050 | None:intergenic | 25.0% |
| !! | AGATCTGAACATAACATTTT+TGG | + | chr8.2:17170468-17170487 | None:intergenic | 25.0% |
| !! | TATTCCTTTTATAGCTACAA+AGG | + | chr8.2:17173200-17173219 | None:intergenic | 25.0% |
| !! | TTAATTTAAAACCTACAACG+TGG | - | chr8.2:17170321-17170340 | MS.gene033111:intron | 25.0% |
| !! | TTTTAAACTTAGTGTGTGTT+TGG | + | chr8.2:17170390-17170409 | None:intergenic | 25.0% |
| !!! | ACCAAATTCATTTTAGTTTC+TGG | - | chr8.2:17172011-17172030 | MS.gene033111:intron | 25.0% |
| !!! | GTTCCATGTTCTAAAAATAT+TGG | - | chr8.2:17171910-17171929 | MS.gene033111:CDS | 25.0% |
| AACTCTTAGTTTACCGATAT+TGG | + | chr8.2:17171813-17171832 | None:intergenic | 30.0% | |
| AATTTGAAAAGTCAAGCATC+TGG | - | chr8.2:17172131-17172150 | MS.gene033111:CDS | 30.0% | |
| ACATATTCTATTGCACTTAG+CGG | + | chr8.2:17171668-17171687 | None:intergenic | 30.0% | |
| AGAGGTCCAATAGTAATATT+TGG | + | chr8.2:17171037-17171056 | None:intergenic | 30.0% | |
| AGATAACAAGTAGTAAAACC+AGG | + | chr8.2:17170115-17170134 | None:intergenic | 30.0% | |
| ATACACATCCATATATGTGA+TGG | + | chr8.2:17171475-17171494 | None:intergenic | 30.0% | |
| ATCACATATATGGATGTGTA+TGG | - | chr8.2:17171474-17171493 | MS.gene033111:intron | 30.0% | |
| ATCGTGCAATTAATCAAGTA+AGG | - | chr8.2:17171287-17171306 | MS.gene033111:CDS | 30.0% | |
| ATTATGTAAGGAATAAGAGC+CGG | + | chr8.2:17172565-17172584 | None:intergenic | 30.0% | |
| ATTCATGTTGATGTTATGGA+TGG | - | chr8.2:17171001-17171020 | MS.gene033111:intron | 30.0% | |
| CAAACATATAAGGACTACTT+TGG | + | chr8.2:17170227-17170246 | None:intergenic | 30.0% | |
| CAAAGGCTTGAATATATGTT+TGG | + | chr8.2:17171406-17171425 | None:intergenic | 30.0% | |
| CAAAGTAGTCCTTATATGTT+TGG | - | chr8.2:17170225-17170244 | MS.gene033111:intron | 30.0% | |
| CACAAAAAAACCAAGTTGTA+AGG | + | chr8.2:17170138-17170157 | None:intergenic | 30.0% | |
| CATTCCTTTGTAGCTATAAA+AGG | - | chr8.2:17173193-17173212 | MS.gene033111:CDS | 30.0% | |
| GACATTCATAGAATATTCAG+TGG | + | chr8.2:17172106-17172125 | None:intergenic | 30.0% | |
| GACCAATTAGAGATTATGTA+AGG | + | chr8.2:17172577-17172596 | None:intergenic | 30.0% | |
| GAGGTCCAATAGTAATATTT+GGG | + | chr8.2:17171036-17171055 | None:intergenic | 30.0% | |
| GATTAAATTATGTGAGTAGG+AGG | - | chr8.2:17173117-17173136 | MS.gene033111:intron | 30.0% | |
| GCAATAGAATATGTTCTTGA+TGG | - | chr8.2:17171674-17171693 | MS.gene033111:CDS | 30.0% | |
| TCTATGTGCAAATTCTATGA+AGG | - | chr8.2:17170178-17170197 | MS.gene033111:intron | 30.0% | |
| TGTGATTCTGATATTTGTCA+TGG | - | chr8.2:17173166-17173185 | MS.gene033111:CDS | 30.0% | |
| TTAATTATGTCTGTAAACCC+TGG | - | chr8.2:17172411-17172430 | MS.gene033111:intron | 30.0% | |
| TTGATTTAGGTAAAAAGCCT+GGG | - | chr8.2:17171608-17171627 | MS.gene033111:intron | 30.0% | |
| TTGGATTCATGTTGATGTTA+TGG | - | chr8.2:17170997-17171016 | MS.gene033111:intron | 30.0% | |
| ! | AATGATGCTATTTATGGCTT+AGG | - | chr8.2:17171764-17171783 | MS.gene033111:intron | 30.0% |
| ! | CAGAATAGAAAAGGTTTGTT+TGG | - | chr8.2:17171953-17171972 | MS.gene033111:CDS | 30.0% |
| ! | CTTTTATAGCTACAAAGGAA+TGG | + | chr8.2:17173195-17173214 | None:intergenic | 30.0% |
| ! | GCTTGACTTTTCAAATTTTG+TGG | + | chr8.2:17172128-17172147 | None:intergenic | 30.0% |
| ! | GTTTCCCAATGTTTTATGTT+GGG | + | chr8.2:17172791-17172810 | None:intergenic | 30.0% |
| ! | TCAGTATTATGTTATTTGGC+AGG | - | chr8.2:17173011-17173030 | MS.gene033111:intron | 30.0% |
| ! | TGTTTCCCAATGTTTTATGT+TGG | + | chr8.2:17172792-17172811 | None:intergenic | 30.0% |
| !!! | AACATAACATTTTTGGTCTG+TGG | + | chr8.2:17170461-17170480 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTATTGTGAACTC+AGG | - | chr8.2:17170704-17170723 | MS.gene033111:intron | 30.0% |
| !!! | GTTTGGATCTATGTTTTGAT+TGG | - | chr8.2:17170270-17170289 | MS.gene033111:intron | 30.0% |
| !!! | TACAACTTGGTTTTTTTGTG+AGG | - | chr8.2:17170138-17170157 | MS.gene033111:intron | 30.0% |
| AAAGGCTACCCAAACATATA+AGG | + | chr8.2:17170237-17170256 | None:intergenic | 35.0% | |
| AAGCCTTCTCTAACAAATTC+GGG | + | chr8.2:17170647-17170666 | None:intergenic | 35.0% | |
| ACCTTGACTTTCATCATCAT+AGG | + | chr8.2:17172250-17172269 | None:intergenic | 35.0% | |
| AGAACTCCAACAGTTATGAT+TGG | + | chr8.2:17170931-17170950 | None:intergenic | 35.0% | |
| ATTAGACCCTACAACTCAAA+CGG | + | chr8.2:17172989-17173008 | None:intergenic | 35.0% | |
| ATTCAACAGGAAACTGAAAC+TGG | + | chr8.2:17171571-17171590 | None:intergenic | 35.0% | |
| ATTCGAAAGCTCTTGAACAA+GGG | - | chr8.2:17169999-17170018 | MS.gene033111:intron | 35.0% | |
| CAAGCCTTCTCTAACAAATT+CGG | + | chr8.2:17170648-17170667 | None:intergenic | 35.0% | |
| CCTTGACTTTCATCATCATA+GGG | + | chr8.2:17172249-17172268 | None:intergenic | 35.0% | |
| CTTGACTTTCATCATCATAG+GGG | + | chr8.2:17172248-17172267 | None:intergenic | 35.0% | |
| CTTGATTTAGGTAAAAAGCC+TGG | - | chr8.2:17171607-17171626 | MS.gene033111:intron | 35.0% | |
| GAAGAGAGAATTCTTGTGAA+GGG | + | chr8.2:17169753-17169772 | None:intergenic | 35.0% | |
| GATTAATTGCACGATGCAAA+TGG | + | chr8.2:17171282-17171301 | None:intergenic | 35.0% | |
| GCTTATGTGGTTACCAATAT+CGG | - | chr8.2:17171797-17171816 | MS.gene033111:intron | 35.0% | |
| GTATAAAGATGAATACCAGG+TGG | + | chr8.2:17171105-17171124 | None:intergenic | 35.0% | |
| TAAAATGATTCTACGAGGAG+TGG | + | chr8.2:17170558-17170577 | None:intergenic | 35.0% | |
| TACGTGACATAGAAAACCAT+AGG | - | chr8.2:17172961-17172980 | MS.gene033111:intron | 35.0% | |
| TATTACTATTGGACCTCTTG+TGG | - | chr8.2:17171039-17171058 | MS.gene033111:intron | 35.0% | |
| TCGCATCAATGCTAATATGA+CGG | - | chr8.2:17170298-17170317 | MS.gene033111:CDS | 35.0% | |
| TGCAGTAACCATCACATATA+TGG | - | chr8.2:17171464-17171483 | MS.gene033111:intron | 35.0% | |
| TGGTAACCACATAAGCATAT+GGG | + | chr8.2:17171793-17171812 | None:intergenic | 35.0% | |
| TTATGTAAGGAATAAGAGCC+GGG | + | chr8.2:17172564-17172583 | None:intergenic | 35.0% | |
| TTGCTAATGTTCATGAGGTT+TGG | - | chr8.2:17170426-17170445 | MS.gene033111:intron | 35.0% | |
| TTGGAGTTCTTGTGTTATCT+TGG | - | chr8.2:17170941-17170960 | MS.gene033111:intron | 35.0% | |
| TTGGGATTATCCTCTTGAAA+AGG | + | chr8.2:17172773-17172792 | None:intergenic | 35.0% | |
| TTGTCACCAATCATAACTGT+TGG | - | chr8.2:17170922-17170941 | MS.gene033111:intron | 35.0% | |
| ! | AAAGTCCATTGATCTGAGAT+TGG | + | chr8.2:17169730-17169749 | None:intergenic | 35.0% |
| ! | CTTGTTATCTCCTTACAACT+TGG | - | chr8.2:17170125-17170144 | MS.gene033111:intron | 35.0% |
| ! | GCATTGTCAACTTTTTAACC+TGG | - | chr8.2:17170094-17170113 | MS.gene033111:intron | 35.0% |
| ! | TTCTCCCAATTTTGCAAAGT+TGG | + | chr8.2:17170818-17170837 | None:intergenic | 35.0% |
| ! | TTGGTAACCACATAAGCATA+TGG | + | chr8.2:17171794-17171813 | None:intergenic | 35.0% |
| !! | AATTTGTTAGAGAAGGCTTG+TGG | - | chr8.2:17170648-17170667 | MS.gene033111:intron | 35.0% |
| !! | AGTTTCTGGTGAATTACACT+TGG | - | chr8.2:17172025-17172044 | MS.gene033111:intron | 35.0% |
| !! | ATGTTAACTTGTTCTGCGTA+AGG | - | chr8.2:17169911-17169930 | MS.gene033111:intron | 35.0% |
| !! | TCAATGATTGCCTTTTCAAG+AGG | - | chr8.2:17172760-17172779 | MS.gene033111:intron | 35.0% |
| !! | TGAGCAAAAAAAGAAGCACT+TGG | + | chr8.2:17172869-17172888 | None:intergenic | 35.0% |
| !! | TTTGTTATTGTGAACTCAGG+AGG | - | chr8.2:17170707-17170726 | MS.gene033111:intron | 35.0% |
| !!! | ACTTGGTTTTTTTGTGAGGT+TGG | - | chr8.2:17170142-17170161 | MS.gene033111:intron | 35.0% |
| AAGTTGGCGGAAAGAATAGA+TGG | + | chr8.2:17170802-17170821 | None:intergenic | 40.0% | |
| AATCCTTGGATTGAAGTGGA+TGG | - | chr8.2:17172616-17172635 | MS.gene033111:intron | 40.0% | |
| ACCTTGAGAAAGTGAGAGAA+CGG | + | chr8.2:17169781-17169800 | None:intergenic | 40.0% | |
| AGGTTTCCCATATGCTTATG+TGG | - | chr8.2:17171784-17171803 | MS.gene033111:intron | 40.0% | |
| CAGGAGGAAAATTTCAACTG+TGG | - | chr8.2:17170723-17170742 | MS.gene033111:intron | 40.0% | |
| CCAAAGGTAAATCTGTCACA+GGG | + | chr8.2:17171078-17171097 | None:intergenic | 40.0% | |
| CTAGGTAAAAGCAGTAGAGT+TGG | - | chr8.2:17170964-17170983 | MS.gene033111:intron | 40.0% | |
| CTGCATTCTTGACAAGATTC+TGG | + | chr8.2:17171449-17171468 | None:intergenic | 40.0% | |
| CTTTGCAAAATTGGGAGAAC+AGG | - | chr8.2:17170819-17170838 | MS.gene033111:intron | 40.0% | |
| GATCGTTGCTAATGTTCATG+AGG | - | chr8.2:17170421-17170440 | MS.gene033111:intron | 40.0% | |
| GATTCGAAAGCTCTTGAACA+AGG | - | chr8.2:17169998-17170017 | MS.gene033111:intron | 40.0% | |
| GGAAGAGAGAATTCTTGTGA+AGG | + | chr8.2:17169754-17169773 | None:intergenic | 40.0% | |
| GGAGCTAAAGATTATGCTGA+AGG | - | chr8.2:17173081-17173100 | MS.gene033111:intron | 40.0% | |
| GTTCTTGTGTTATCTTGGCT+AGG | - | chr8.2:17170946-17170965 | MS.gene033111:intron | 40.0% | |
| TACAACTCAAACGGATCCTA+TGG | + | chr8.2:17172980-17172999 | None:intergenic | 40.0% | |
| TATGTAAGGAATAAGAGCCG+GGG | + | chr8.2:17172563-17172582 | None:intergenic | 40.0% | |
| TCCAAAGGTAAATCTGTCAC+AGG | + | chr8.2:17171079-17171098 | None:intergenic | 40.0% | |
| TCCGCCAACTTTGCAAAATT+GGG | - | chr8.2:17170811-17170830 | MS.gene033111:intron | 40.0% | |
| TGATTGTAGAACCAGATCAG+CGG | - | chr8.2:17171191-17171210 | MS.gene033111:intron | 40.0% | |
| TGATTTGAGAAGATTGTGCG+TGG | - | chr8.2:17172479-17172498 | MS.gene033111:intron | 40.0% | |
| TGTGAATCCTTGGATTGAAG+TGG | - | chr8.2:17172612-17172631 | MS.gene033111:intron | 40.0% | |
| TTCCGCCAACTTTGCAAAAT+TGG | - | chr8.2:17170810-17170829 | MS.gene033111:intron | 40.0% | |
| ! | AATTGGTCTCTCTCTCTCTA+GGG | - | chr8.2:17172589-17172608 | MS.gene033111:intron | 40.0% |
| ! | CCCTATGATGATGAAAGTCA+AGG | - | chr8.2:17172246-17172265 | MS.gene033111:intron | 40.0% |
| ! | TAATTGGTCTCTCTCTCTCT+AGG | - | chr8.2:17172588-17172607 | MS.gene033111:intron | 40.0% |
| ! | TCCATTGATCTGAGATTGGA+GGG | + | chr8.2:17169726-17169745 | None:intergenic | 40.0% |
| ! | TCCCAATTTTGCAAAGTTGG+CGG | + | chr8.2:17170815-17170834 | None:intergenic | 40.0% |
| ! | TGTTATTTGGCAGGTGATTG+AGG | - | chr8.2:17173020-17173039 | MS.gene033111:intron | 40.0% |
| !! | ACACCCGAATTTGTTAGAGA+AGG | - | chr8.2:17170641-17170660 | MS.gene033111:intron | 40.0% |
| !! | ATAGGATCCGTTTGAGTTGT+AGG | - | chr8.2:17172979-17172998 | MS.gene033111:intron | 40.0% |
| !! | TAGGATCCGTTTGAGTTGTA+GGG | - | chr8.2:17172980-17172999 | MS.gene033111:intron | 40.0% |
| AATACCAGGTGGACATCCAA+AGG | + | chr8.2:17171094-17171113 | None:intergenic | 45.0% | |
| ACAGGAAACTGAAACTGGAG+TGG | + | chr8.2:17171566-17171585 | None:intergenic | 45.0% | |
| ACCCTCCAATCTCAGATCAA+TGG | - | chr8.2:17169722-17169741 | MS.gene033111:intron | 45.0% | |
| AGCACCTTGTAAGCATTTGC+TGG | + | chr8.2:17172652-17172671 | None:intergenic | 45.0% | |
| ATGTAAGGAATAAGAGCCGG+GGG | + | chr8.2:17172562-17172581 | None:intergenic | 45.0% | |
| ATGTCTGTAAACCCTGGCTT+TGG | - | chr8.2:17172417-17172436 | MS.gene033111:intron | 45.0% | |
| CATCAAACTCTCCACGTTGT+AGG | + | chr8.2:17170335-17170354 | None:intergenic | 45.0% | |
| CCCTGTGACAGATTTACCTT+TGG | - | chr8.2:17171075-17171094 | MS.gene033111:intron | 45.0% | |
| CCTTGAGAAAGTGAGAGAAC+GGG | + | chr8.2:17169780-17169799 | None:intergenic | 45.0% | |
| CTACAACGTGGAGAGTTTGA+TGG | - | chr8.2:17170333-17170352 | MS.gene033111:intron | 45.0% | |
| CTTGAGAAAGTGAGAGAACG+GGG | + | chr8.2:17169779-17169798 | None:intergenic | 45.0% | |
| CTTGGATTGAAGTGGATGGT+GGG | - | chr8.2:17172620-17172639 | MS.gene033111:intron | 45.0% | |
| GAAAGCTCTTGAACAAGGGA+AGG | - | chr8.2:17170003-17170022 | MS.gene033111:intron | 45.0% | |
| GATTGTAGAACCAGATCAGC+GGG | - | chr8.2:17171192-17171211 | MS.gene033111:intron | 45.0% | |
| GCACCTTGTAAGCATTTGCT+GGG | + | chr8.2:17172651-17172670 | None:intergenic | 45.0% | |
| GCTCCTGCTTTGATGAAATC+TGG | + | chr8.2:17171220-17171239 | None:intergenic | 45.0% | |
| GTAAAAGCAGTAGAGTTGGC+TGG | - | chr8.2:17170968-17170987 | MS.gene033111:intron | 45.0% | |
| GTGCCAGATTTCATCAAAGC+AGG | - | chr8.2:17171214-17171233 | MS.gene033111:intron | 45.0% | |
| TACCCCAGCAAATGCTTACA+AGG | - | chr8.2:17172645-17172664 | MS.gene033111:intron | 45.0% | |
| TGCACGATGCAAATGGATAG+TGG | + | chr8.2:17171275-17171294 | None:intergenic | 45.0% | |
| TTGGATTGAAGTGGATGGTG+GGG | - | chr8.2:17172621-17172640 | MS.gene033111:intron | 45.0% | |
| TTTACCTTTGGATGTCCACC+TGG | - | chr8.2:17171087-17171106 | MS.gene033111:intron | 45.0% | |
| ! | CACCTTGTAAGCATTTGCTG+GGG | + | chr8.2:17172650-17172669 | None:intergenic | 45.0% |
| ! | CTTGGCTCTCGATAAAACTC+TGG | + | chr8.2:17172446-17172465 | None:intergenic | 45.0% |
| ! | GGAGGCATACATTGCAATAG+TGG | - | chr8.2:17173135-17173154 | MS.gene033111:intron | 45.0% |
| ! | GTCCATTGATCTGAGATTGG+AGG | + | chr8.2:17169727-17169746 | None:intergenic | 45.0% |
| ! | TAGAGTTGGCTGGTTGTGAT+TGG | - | chr8.2:17170978-17170997 | MS.gene033111:intron | 45.0% |
| ! | TGGATTTTGTGTTTTCCCCC+CGG | - | chr8.2:17172543-17172562 | MS.gene033111:intron | 45.0% |
| !! | TCTTATTATGGTGCTGGCAG+TGG | - | chr8.2:17172377-17172396 | MS.gene033111:intron | 45.0% |
| AAAAGCCTGGGAGCTAAAGC+TGG | - | chr8.2:17171620-17171639 | MS.gene033111:intron | 50.0% | |
| AGAAAGTGAGAGAACGGGGA+CGG | + | chr8.2:17169775-17169794 | None:intergenic | 50.0% | |
| AGATTGTGCGTGGAGAAGGT+AGG | - | chr8.2:17172489-17172508 | MS.gene033111:intron | 50.0% | |
| ATTTGGCAGGTGATTGAGGC+TGG | - | chr8.2:17173024-17173043 | MS.gene033111:intron | 50.0% | |
| CCACCATCCACTTCAATCCA+AGG | + | chr8.2:17172622-17172641 | None:intergenic | 50.0% | |
| CCCGTTCTCTCACTTTCTCA+AGG | - | chr8.2:17169777-17169796 | MS.gene033111:intron | 50.0% | |
| CCTTGGATTGAAGTGGATGG+TGG | - | chr8.2:17172619-17172638 | MS.gene033111:intron | 50.0% | |
| CGCAATGCATCAACCACAAG+AGG | + | chr8.2:17171055-17171074 | None:intergenic | 50.0% | |
| GAGAAGATTGTGCGTGGAGA+AGG | - | chr8.2:17172485-17172504 | MS.gene033111:intron | 50.0% | |
| TGTAAGGAATAAGAGCCGGG+GGG | + | chr8.2:17172561-17172580 | None:intergenic | 50.0% | |
| ! | ATTGCACTTAGCGGAGTACC+AGG | + | chr8.2:17171659-17171678 | None:intergenic | 50.0% |
| ! | GATCTGAGATTGGAGGGTAG+AGG | + | chr8.2:17169720-17169739 | None:intergenic | 50.0% |
| ! | TTAGCGGAGTACCAGGGTTT+AGG | + | chr8.2:17171652-17171671 | None:intergenic | 50.0% |
| ! | TTGCACTTAGCGGAGTACCA+GGG | + | chr8.2:17171658-17171677 | None:intergenic | 50.0% |
| !! | CTCTCTAGGGTGTGAATCCT+TGG | - | chr8.2:17172602-17172621 | MS.gene033111:intron | 50.0% |
| !! | GTTGCTGGTTCTGCTGTGTT+TGG | - | chr8.2:17173060-17173079 | MS.gene033111:intron | 50.0% |
| !! | TCTGTAAACCCTGGCTTTGG+TGG | - | chr8.2:17172420-17172439 | MS.gene033111:intron | 50.0% |
| AAACTCTGGCCACCAAAGCC+AGG | + | chr8.2:17172432-17172451 | None:intergenic | 55.0% | |
| AAATCTGGCACCCGCTGATC+TGG | + | chr8.2:17171205-17171224 | None:intergenic | 55.0% | |
| AACTCTGGCCACCAAAGCCA+GGG | + | chr8.2:17172431-17172450 | None:intergenic | 55.0% | |
| GCTGGAGTTGTCCTAAACCC+TGG | - | chr8.2:17171638-17171657 | MS.gene033111:CDS | 55.0% | |
| TGAGGCTGGAGCTAATGCAC+TGG | - | chr8.2:17173038-17173057 | MS.gene033111:intron | 55.0% | |
| TGTGTGTGTGTGCGTGTGCA+AGG | + | chr8.2:17170624-17170643 | None:intergenic | 55.0% | |
| ! | CAACTCCAGCTTTAGCTCCC+AGG | + | chr8.2:17171628-17171647 | None:intergenic | 55.0% |
| !! | GGAGCTAATGCACTGGTTGC+TGG | - | chr8.2:17173045-17173064 | MS.gene033111:intron | 55.0% |
| !! | GGTGCTGGCAGTGGTTGACT+TGG | - | chr8.2:17172386-17172405 | MS.gene033111:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17169686 | 17173255 | 17169686 | ID=MS.gene033111 |
| chr8.2 | mRNA | 17169686 | 17173255 | 17169686 | ID=MS.gene033111.t1;Parent=MS.gene033111 |
| chr8.2 | exon | 17173143 | 17173255 | 17173143 | ID=MS.gene033111.t1.exon1;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17173143 | 17173255 | 17173143 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17172101 | 17172215 | 17172101 | ID=MS.gene033111.t1.exon2;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17172101 | 17172215 | 17172101 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17171833 | 17171973 | 17171833 | ID=MS.gene033111.t1.exon3;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17171833 | 17171973 | 17171833 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17171638 | 17171751 | 17171638 | ID=MS.gene033111.t1.exon4;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17171638 | 17171751 | 17171638 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17171246 | 17171324 | 17171246 | ID=MS.gene033111.t1.exon5;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17171246 | 17171324 | 17171246 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17170435 | 17170544 | 17170435 | ID=MS.gene033111.t1.exon6;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17170435 | 17170544 | 17170435 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17170275 | 17170331 | 17170275 | ID=MS.gene033111.t1.exon7;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17170275 | 17170331 | 17170275 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17169839 | 17169908 | 17169839 | ID=MS.gene033111.t1.exon8;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17169839 | 17169908 | 17169839 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| chr8.2 | exon | 17169686 | 17169735 | 17169686 | ID=MS.gene033111.t1.exon9;Parent=MS.gene033111.t1 |
| chr8.2 | CDS | 17169686 | 17169735 | 17169686 | ID=cds.MS.gene033111.t1;Parent=MS.gene033111.t1 |
| Gene Sequence |
| Protein sequence |
