Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040340.t1 | XP_013448051.1 | 98.6 | 210 | 3 | 0 | 1 | 210 | 1 | 210 | 4.50E-115 | 424.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040340.t1 | Q9SE42 | 87.2 | 203 | 26 | 0 | 6 | 208 | 8 | 210 | 1.1e-101 | 370.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040340.t1 | A0A072TYY4 | 98.6 | 210 | 3 | 0 | 1 | 210 | 1 | 210 | 3.2e-115 | 424.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040340 | MS.gene060454 | PPI |
| MS.gene040340 | MS.gene62532 | PPI |
| MS.gene58416 | MS.gene040340 | PPI |
| MS.gene62532 | MS.gene040340 | PPI |
| MS.gene033111 | MS.gene040340 | PPI |
| MS.gene040340 | MS.gene71518 | PPI |
| MS.gene060454 | MS.gene040340 | PPI |
| MS.gene040340 | MS.gene061731 | PPI |
| MS.gene044396 | MS.gene040340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040340.t1 | MTR_7g029630 | 98.571 | 210 | 3 | 0 | 1 | 210 | 1 | 210 | 2.86e-154 | 428 |
| MS.gene040340.t1 | MTR_7g029630 | 88.535 | 157 | 18 | 0 | 38 | 194 | 11 | 167 | 2.82e-98 | 285 |
| MS.gene040340.t1 | MTR_3g449340 | 79.375 | 160 | 22 | 3 | 70 | 222 | 1 | 156 | 2.64e-81 | 241 |
| MS.gene040340.t1 | MTR_4g108800 | 39.234 | 209 | 119 | 3 | 7 | 210 | 60 | 265 | 1.57e-42 | 146 |
| MS.gene040340.t1 | MTR_0937s0020 | 41.290 | 155 | 85 | 4 | 11 | 164 | 320 | 469 | 1.83e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040340.t1 | AT3G01850 | 81.068 | 206 | 39 | 0 | 3 | 208 | 2 | 207 | 2.25e-129 | 365 |
| MS.gene040340.t1 | AT3G01850 | 81.068 | 206 | 39 | 0 | 3 | 208 | 2 | 207 | 2.25e-129 | 365 |
| MS.gene040340.t1 | AT1G63290 | 80.288 | 208 | 41 | 0 | 1 | 208 | 2 | 209 | 5.67e-124 | 351 |
| MS.gene040340.t1 | AT3G01850 | 77.841 | 176 | 39 | 0 | 34 | 209 | 6 | 181 | 2.93e-104 | 300 |
| MS.gene040340.t1 | AT3G01850 | 77.841 | 176 | 39 | 0 | 34 | 209 | 6 | 181 | 2.93e-104 | 300 |
| MS.gene040340.t1 | AT5G61410 | 39.713 | 209 | 118 | 3 | 7 | 210 | 60 | 265 | 2.01e-42 | 145 |
| MS.gene040340.t1 | AT5G61410 | 39.713 | 209 | 118 | 3 | 7 | 210 | 60 | 265 | 2.01e-42 | 145 |
Find 66 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGTGTGACTTAATATTT+TGG | 0.153490 | 7.4:+71250371 | None:intergenic |
| TAGCATCGAAGGAGCTATTT+TGG | 0.185732 | 7.4:+71253428 | None:intergenic |
| ATCATCTGACTTCGCTAATT+TGG | 0.209722 | 7.4:-71253406 | MS.gene040340:CDS |
| GGAGCGCCCATAGTTAAATT+AGG | 0.213679 | 7.4:+71250784 | None:intergenic |
| CAACCATTGCAGGGCATATC+TGG | 0.234048 | 7.4:-71250635 | MS.gene040340:intron |
| TTGGGAAAAGCTGGTGCTTC+TGG | 0.245176 | 7.4:-71250568 | MS.gene040340:CDS |
| TCTTGATTATGTTGAACCTT+TGG | 0.292455 | 7.4:-71250587 | MS.gene040340:CDS |
| CTTGATTATGTTGAACCTTT+GGG | 0.320952 | 7.4:-71250586 | MS.gene040340:CDS |
| CGCTGATGCAGCCACATCTA+TGG | 0.337088 | 7.4:+71247009 | None:intergenic |
| GATATTACATGAGCTGGTTC+AGG | 0.339498 | 7.4:+71246944 | None:intergenic |
| TTTCTCAAACTTTCAATGAT+TGG | 0.342339 | 7.4:+71250763 | None:intergenic |
| ACCTCTTCGACGGATGTTCC+AGG | 0.369177 | 7.4:+71250325 | None:intergenic |
| TGATCAATTCCGGCGCTGAT+TGG | 0.373482 | 7.4:-71253365 | MS.gene040340:CDS |
| GAGCGCCCATAGTTAAATTA+GGG | 0.385677 | 7.4:+71250785 | None:intergenic |
| ATGACTGTAGAACCAGGATT+TGG | 0.408120 | 7.4:-71250044 | MS.gene040340:CDS |
| GGAGCGAATTGCATTGTTGC+TGG | 0.409909 | 7.4:-71246986 | MS.gene040340:CDS |
| GTTGCTGGAAGTTCAGTGTT+TGG | 0.413074 | 7.4:-71246971 | MS.gene040340:CDS |
| CAAACCAGGTCCGGATACTA+AGG | 0.416716 | 7.4:-71249881 | MS.gene040340:intron |
| AAAATTTATGCCAGAGATGA+TGG | 0.429025 | 7.4:-71250015 | MS.gene040340:CDS |
| GCTCATCGTATGATCAATTC+CGG | 0.445858 | 7.4:-71253375 | MS.gene040340:CDS |
| CCAACCAGGCCGGGCACACT+TGG | 0.452501 | 7.4:-71246549 | MS.gene040340:CDS |
| TTTGTCCCTAATTTAACTAT+GGG | 0.464194 | 7.4:-71250790 | MS.gene040340:CDS |
| CAAGAGGATTTGTAACCATC+AGG | 0.465203 | 7.4:+71250605 | None:intergenic |
| AGCTGAAAATCCTGTGGAAA+TGG | 0.466494 | 7.4:-71250075 | MS.gene040340:CDS |
| CCAAGTGTGCCCGGCCTGGT+TGG | 0.472694 | 7.4:+71246549 | None:intergenic |
| GGTACTTCTTCCTTAGTATC+CGG | 0.475921 | 7.4:+71249871 | None:intergenic |
| TAGGCCAAGTGTGCCCGGCC+TGG | 0.479027 | 7.4:+71246545 | None:intergenic |
| AATACCTTGTCCATCATCTC+TGG | 0.493165 | 7.4:+71250005 | None:intergenic |
| CTACATAGGCCAAGTGTGCC+CGG | 0.496931 | 7.4:+71246540 | None:intergenic |
| AAGTCACACGGCATGAGGCC+TGG | 0.496933 | 7.4:-71250361 | MS.gene040340:CDS |
| ATAGATGTGGCTGCATCAGC+GGG | 0.498903 | 7.4:-71247007 | MS.gene040340:CDS |
| ATATTACATGAGCTGGTTCA+GGG | 0.508879 | 7.4:+71246945 | None:intergenic |
| GTTGAACCTTTGGGAAAAGC+TGG | 0.516076 | 7.4:-71250577 | MS.gene040340:CDS |
| AGTAAGGATATTACATGAGC+TGG | 0.516374 | 7.4:+71246938 | None:intergenic |
| CGGCGCTGATTGGCTTCACA+TGG | 0.520700 | 7.4:-71253355 | MS.gene040340:CDS |
| TTGGCTTCACATGGATATCA+TGG | 0.529002 | 7.4:-71253346 | MS.gene040340:intron |
| TTTCATATAGAGACATCAAA+AGG | 0.529704 | 7.4:-71250538 | MS.gene040340:intron |
| CGTCGAAGAGGTTTATCCCC+TGG | 0.537679 | 7.4:-71250314 | MS.gene040340:intron |
| GATACCTCTATGTCAAGTGA+TGG | 0.543313 | 7.4:+71249849 | None:intergenic |
| CCTGGTGTATCGATAAAGCC+TGG | 0.545173 | 7.4:-71250343 | MS.gene040340:CDS |
| ACTGTAGAACCAGGATTTGG+AGG | 0.545563 | 7.4:-71250041 | MS.gene040340:CDS |
| CATAGATGTGGCTGCATCAG+CGG | 0.553838 | 7.4:-71247008 | MS.gene040340:CDS |
| GCATCCTATCGTTACCAACC+AGG | 0.559089 | 7.4:-71246563 | MS.gene040340:CDS |
| CCAGGCTTTATCGATACACC+AGG | 0.560158 | 7.4:+71250343 | None:intergenic |
| CCTATCGTTACCAACCAGGC+CGG | 0.561202 | 7.4:-71246559 | MS.gene040340:CDS |
| TATGTAGCACTGATACTTGA+CGG | 0.562828 | 7.4:-71246524 | MS.gene040340:CDS |
| CTATCGTTACCAACCAGGCC+GGG | 0.564657 | 7.4:-71246558 | MS.gene040340:CDS |
| CTTGTCATGACTGTAGAACC+AGG | 0.566539 | 7.4:-71250050 | MS.gene040340:CDS |
| AAGTCAGATGATAGCATCGA+AGG | 0.571145 | 7.4:+71253417 | None:intergenic |
| GTACCCATCACTTGACATAG+AGG | 0.574322 | 7.4:-71249853 | MS.gene040340:intron |
| ATGACAAGAACCATTTCCAC+AGG | 0.585136 | 7.4:+71250065 | None:intergenic |
| ATATTAAGTCACACGGCATG+AGG | 0.586950 | 7.4:-71250366 | MS.gene040340:CDS |
| GCAGCCACATCTATGGTTGA+AGG | 0.590322 | 7.4:+71247016 | None:intergenic |
| ATATCTGGACTGTCACCTGA+TGG | 0.594881 | 7.4:-71250620 | MS.gene040340:CDS |
| ATACCTCTATGTCAAGTGAT+GGG | 0.606611 | 7.4:+71249850 | None:intergenic |
| AAAGGTTCAACATAATCAAG+AGG | 0.610778 | 7.4:+71250589 | None:intergenic |
| AGGGCCTTCAACCATAGATG+TGG | 0.611174 | 7.4:-71247020 | MS.gene040340:CDS |
| CATGTGAAGCCAATCAGCGC+CGG | 0.612387 | 7.4:+71253356 | None:intergenic |
| CCGGCCTGGTTGGTAACGAT+AGG | 0.614316 | 7.4:+71246559 | None:intergenic |
| GCCTGGAACATCCGTCGAAG+AGG | 0.624539 | 7.4:-71250326 | MS.gene040340:CDS |
| GTCAAGTATCAGTGCTACAT+AGG | 0.632180 | 7.4:+71246526 | None:intergenic |
| TATTACATGAGCTGGTTCAG+GGG | 0.640775 | 7.4:+71246946 | None:intergenic |
| ATCCAAAATATTAAGTCACA+CGG | 0.657663 | 7.4:-71250373 | MS.gene040340:CDS |
| CAGGGGATAAACCTCTTCGA+CGG | 0.659731 | 7.4:+71250315 | None:intergenic |
| GGTTGAAGCTGAAAATCCTG+TGG | 0.666343 | 7.4:-71250081 | MS.gene040340:CDS |
| TATGCCAGAGATGATGGACA+AGG | 0.713929 | 7.4:-71250009 | MS.gene040340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 71246517 | 71253463 | 71246517 | ID=MS.gene040340 |
| chr7.4 | mRNA | 71246517 | 71253463 | 71246517 | ID=MS.gene040340.t1;Parent=MS.gene040340 |
| chr7.4 | exon | 71253347 | 71253463 | 71253347 | ID=MS.gene040340.t1.exon1;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71253347 | 71253463 | 71253347 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71251775 | 71251779 | 71251775 | ID=MS.gene040340.t1.exon2;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71251775 | 71251779 | 71251775 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71250754 | 71250816 | 71250754 | ID=MS.gene040340.t1.exon3;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71250754 | 71250816 | 71250754 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71250539 | 71250645 | 71250539 | ID=MS.gene040340.t1.exon4;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71250539 | 71250645 | 71250539 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71250315 | 71250412 | 71250315 | ID=MS.gene040340.t1.exon5;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71250315 | 71250412 | 71250315 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71250010 | 71250102 | 71250010 | ID=MS.gene040340.t1.exon6;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71250010 | 71250102 | 71250010 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71249854 | 71249895 | 71249854 | ID=MS.gene040340.t1.exon7;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71249854 | 71249895 | 71249854 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71246952 | 71247056 | 71246952 | ID=MS.gene040340.t1.exon8;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71246952 | 71247056 | 71246952 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| chr7.4 | exon | 71246517 | 71246627 | 71246517 | ID=MS.gene040340.t1.exon9;Parent=MS.gene040340.t1 |
| chr7.4 | CDS | 71246517 | 71246627 | 71246517 | ID=cds.MS.gene040340.t1;Parent=MS.gene040340.t1 |
| Gene Sequence |
| Protein sequence |