AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03401.t1 MTR_6g034560 98.169 710 11 1 1 708 1 710 0.0 1435
MS.gene03401.t1 MTR_4g104360 54.597 707 300 7 1 697 1 696 0.0 717
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03401.t1 AT1G22730 61.615 706 243 11 11 707 2 688 0.0 843
MS.gene03401.t1 AT5G63190 53.274 672 295 8 31 697 39 696 0.0 698
MS.gene03401.t1 AT5G63190 53.274 672 295 8 31 697 39 696 0.0 698
MS.gene03401.t1 AT4G24800 52.143 700 318 9 5 697 2 691 0.0 664
MS.gene03401.t1 AT4G24800 42.160 287 164 2 115 401 412 696 4.02e-67 234
MS.gene03401.t1 AT4G24800 52.143 700 318 9 5 697 2 691 0.0 664
MS.gene03401.t1 AT4G24800 42.160 287 164 2 115 401 412 696 4.02e-67 234
MS.gene03401.t1 AT4G24800 52.143 700 318 9 5 697 2 691 0.0 664
MS.gene03401.t1 AT4G24800 42.160 287 164 2 115 401 412 696 4.02e-67 234
MS.gene03401.t1 AT4G24800 52.143 700 318 9 5 697 2 691 0.0 664
MS.gene03401.t1 AT4G24800 42.160 287 164 2 115 401 412 696 4.02e-67 234
MS.gene03401.t1 AT3G48390 53.584 586 257 6 115 697 54 627 0.0 625
MS.gene03401.t1 AT3G48390 42.193 301 160 6 412 706 52 344 1.14e-58 209

Find 117 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACACTCCACCTTTCTT+TGG 0.211680 6.2:-33948050 None:intergenic
TATCAAATGGTTAAAGGTTT+TGG 0.219127 6.2:+33950338 MS.gene03401:CDS
CTGCCGTTGACTTGCGCCTT+TGG 0.220929 6.2:-33947975 None:intergenic
ACAAAATAGTAACTGTATTC+TGG 0.239051 6.2:-33948823 None:intergenic
ACTATGTATCAAATGGTTAA+AGG 0.245089 6.2:+33950332 MS.gene03401:CDS
TGCCGTTGACTTGCGCCTTT+GGG 0.260885 6.2:-33947974 None:intergenic
TGAAGAAGCTCTTGATGATT+TGG 0.280860 6.2:+33950367 MS.gene03401:CDS
CTGTCATAGTTTGGATCATT+GGG 0.306818 6.2:-33948404 None:intergenic
CCGCAACAGCTTGAAGATAT+TGG 0.323766 6.2:+33949966 MS.gene03401:CDS
ATTCAAGAGTACTTTCTATC+AGG 0.334373 6.2:+33949654 MS.gene03401:CDS
CTTCAGCAGCTTCTTTCAAT+AGG 0.338447 6.2:-33949395 None:intergenic
AGCTCTTGATGATTTGGCTT+TGG 0.347710 6.2:+33950373 MS.gene03401:CDS
ATCTTGAGATGTTGGGGTGG+GGG 0.350219 6.2:+33950077 MS.gene03401:CDS
ACCTCAGTGCTGTCATAGTT+TGG 0.351430 6.2:-33948413 None:intergenic
GAAGATGTGAAAGATATGAT+AGG 0.364316 6.2:+33950128 MS.gene03401:CDS
TTGCTAAAAGCAAGACTTGC+TGG 0.369049 6.2:+33950047 MS.gene03401:CDS
TGAAATCATTGAGCGGCGTT+GGG 0.375698 6.2:+33949173 MS.gene03401:CDS
TCTCATTGTACAGGTGGTTC+TGG 0.383793 6.2:+33948326 MS.gene03401:intron
TTCTTTCAATAGGTCTAGTA+AGG 0.385022 6.2:-33949385 None:intergenic
ATCAGCCGATTCGACTAGTT+TGG 0.385780 6.2:-33948965 None:intergenic
GTTCTGGTGGTAAAGGCACC+TGG 0.387168 6.2:+33948342 MS.gene03401:CDS
TCAGCTCCTTTAGAATCATT+TGG 0.390417 6.2:-33949102 None:intergenic
TGCAAAGGAGAAACAGTTAC+TGG 0.401474 6.2:-33947924 None:intergenic
ATGAGTGAAGTTAGAGAAAT+CGG 0.402526 6.2:+33948796 MS.gene03401:CDS
TGGAATACTTCAACAACTAA+TGG 0.403546 6.2:+33949509 MS.gene03401:CDS
TGAAGTATTCCACGCGCGTT+TGG 0.405900 6.2:-33949498 None:intergenic
GCTGTCATAGTTTGGATCAT+TGG 0.415985 6.2:-33948405 None:intergenic
TTCAAGAATGCTACAGAGAA+TGG 0.419954 6.2:+33950476 MS.gene03401:CDS
ACTATTTCATGATGAAAGAA+AGG 0.422014 6.2:-33949315 None:intergenic
CAGCGTGTAAAGGTGCTGTT+AGG 0.424744 6.2:-33949152 None:intergenic
TGTAGATGCATGAAAGAGTT+AGG 0.427178 6.2:+33950197 MS.gene03401:CDS
CTGAAATCATTGAGCGGCGT+TGG 0.429037 6.2:+33949172 MS.gene03401:CDS
TTCTGGTGGTAAAGGCACCT+GGG 0.432855 6.2:+33948343 MS.gene03401:CDS
ACATCTTCAATTTCCCATCC+TGG 0.435001 6.2:-33950113 None:intergenic
AAAGAATAGAGAGAAAGAAA+TGG 0.442612 6.2:+33949782 MS.gene03401:CDS
TGAGAGAATCTTGAGATGTT+GGG 0.443902 6.2:+33950070 MS.gene03401:CDS
TTGAAGCACTTTGCTTCCAA+TGG 0.444863 6.2:-33950012 None:intergenic
TTTGGGGACCTTGGTGACTT+AGG 0.446880 6.2:-33947957 None:intergenic
CCACCTGACGATGTCGTCAA+TGG 0.446888 6.2:+33949834 MS.gene03401:CDS
GCTAGAATATCAACCGTATC+CGG 0.448723 6.2:-33949006 None:intergenic
AACACAAGCCAAATGTCAAA+AGG 0.450721 6.2:+33949429 MS.gene03401:CDS
AAAGCTTGTTTCGATGTCAA+TGG 0.452801 6.2:+33948849 MS.gene03401:CDS
ATCACAATGGATTTCAATGA+TGG 0.453089 6.2:+33947846 None:intergenic
AAAAGAAGAATGAGAGATTG+TGG 0.455584 6.2:+33950273 MS.gene03401:CDS
TTGAAAGAATATGTAGTAAG+TGG 0.457360 6.2:+33949249 MS.gene03401:CDS
GGTGGTAAAGGCACCTGGGG+TGG 0.457361 6.2:+33948347 MS.gene03401:CDS
TGAGGTTGTGAAGAAAAGTT+TGG 0.459669 6.2:+33950238 MS.gene03401:CDS
ATTAATAACTATGTATCAAA+TGG 0.462836 6.2:+33950325 MS.gene03401:CDS
AAACCATTGACGACATCGTC+AGG 0.469326 6.2:-33949837 None:intergenic
AATCTTGAGATGTTGGGGTG+GGG 0.469675 6.2:+33950076 MS.gene03401:CDS
GCAAACTGATTCTTAGCATC+AGG 0.470425 6.2:-33950401 None:intergenic
ACTTGCGCCTTTGGGGACCT+TGG 0.472117 6.2:-33947966 None:intergenic
TTGAAAGAAGCTGCTGAAGA+AGG 0.482697 6.2:+33949399 MS.gene03401:CDS
ACAGGTGGTTCTGGTGGTAA+AGG 0.492160 6.2:+33948335 MS.gene03401:intron
TGCTATGTTTCTAGCAAGAT+CGG 0.494473 6.2:+33949923 MS.gene03401:CDS
AAAGAAGAATGAGAGATTGT+GGG 0.498648 6.2:+33950274 MS.gene03401:CDS
GTGAGAGAATCTTGAGATGT+TGG 0.499361 6.2:+33950069 MS.gene03401:CDS
TCCCCAAAGGCGCAAGTCAA+CGG 0.502770 6.2:+33947972 MS.gene03401:CDS
AGATATGATAGGGAAATTGT+TGG 0.506777 6.2:+33950139 MS.gene03401:CDS
GATAGTAGACATACCGGATA+CGG 0.514807 6.2:+33948993 MS.gene03401:CDS
TGGAAGCAAAGTGCTTCAAA+TGG 0.519682 6.2:+33950016 MS.gene03401:CDS
GAATCTTGAGATGTTGGGGT+GGG 0.520362 6.2:+33950075 MS.gene03401:CDS
AAGATGTGAAAGATATGATA+GGG 0.521203 6.2:+33950129 MS.gene03401:CDS
TTGTTGGAGGAATATGAATC+TGG 0.521956 6.2:+33950155 MS.gene03401:CDS
CTAAAGCGGCTTCCGAAGGT+TGG 0.527037 6.2:+33949532 MS.gene03401:CDS
AACGATGGACGTCCAAAGAA+AGG 0.527199 6.2:+33948038 MS.gene03401:CDS
TAGAGAGAAAGAAATGGCTT+CGG 0.528261 6.2:+33949788 MS.gene03401:CDS
TGGAAGTAGCAAACCAGGAT+GGG 0.530192 6.2:+33950100 MS.gene03401:CDS
GTTGATAAAGCAAAGAATGA+AGG 0.531173 6.2:+33950431 MS.gene03401:CDS
TGATACTGCTTTAGACAATC+CGG 0.532228 6.2:+33949884 MS.gene03401:CDS
ATTCACCAAACTAGTCGAAT+CGG 0.537156 6.2:+33948960 MS.gene03401:CDS
GTGGAAGTAGCAAACCAGGA+TGG 0.539492 6.2:+33950099 MS.gene03401:CDS
AAAGAAAACGAACACTGCAT+TGG 0.541140 6.2:+33948705 MS.gene03401:CDS
TGAAACACATAACCAACCTT+CGG 0.544071 6.2:-33949544 None:intergenic
CCAATATCTTCAAGCTGTTG+CGG 0.544667 6.2:-33949966 None:intergenic
AATCCTTTGTAAACTTGTGA+AGG 0.549640 6.2:-33948940 None:intergenic
GCAAGATCTTCAACGACTAC+CGG 0.552067 6.2:-33949903 None:intergenic
TGTATAAGTCAAGATTCCAT+TGG 0.552180 6.2:+33949996 MS.gene03401:CDS
AGTGAAAAGAGCTCTTATCA+TGG 0.552908 6.2:+33949335 MS.gene03401:CDS
TTAGGAGAAGAAAGTTGCAA+AGG 0.555570 6.2:-33947939 None:intergenic
ACACAAGCCAAATGTCAAAA+GGG 0.556517 6.2:+33949430 MS.gene03401:CDS
GAAGCTAATAACATTAGCAA+TGG 0.558746 6.2:+33949755 MS.gene03401:CDS
TTTCTTTGGACGTCCATCGT+TGG 0.560284 6.2:-33948036 None:intergenic
ATCATTGAGCGGCGTTGGGG+AGG 0.564241 6.2:+33949177 MS.gene03401:CDS
TATGATAGGGAAATTGTTGG+AGG 0.565030 6.2:+33950142 MS.gene03401:CDS
AAGAGCTCTTATCATGGCGA+TGG 0.566370 6.2:+33949341 MS.gene03401:CDS
TCTGGTGGTAAAGGCACCTG+GGG 0.570553 6.2:+33948344 MS.gene03401:CDS
TCAACAACTAATGGCTAAAG+CGG 0.571498 6.2:+33949518 MS.gene03401:CDS
CACCCTTCACAAGTTTACAA+AGG 0.573720 6.2:+33948937 MS.gene03401:CDS
TGTTTCAAGCAATCCACCCC+AGG 0.576016 6.2:-33948360 None:intergenic
TCAATGATTTCAGCGTGTAA+AGG 0.579714 6.2:-33949162 None:intergenic
CTCGATATACCAAACGCGCG+TGG 0.584149 6.2:+33949489 MS.gene03401:CDS
CATTGTACAGGTGGTTCTGG+TGG 0.587682 6.2:+33948329 MS.gene03401:intron
GCCGTTGACTTGCGCCTTTG+GGG 0.588452 6.2:-33947973 None:intergenic
GGTTGACGACATTCTTCCGC+CGG 0.590257 6.2:+33949050 MS.gene03401:CDS
ATGGCTAAAGCGGCTTCCGA+AGG 0.591062 6.2:+33949528 MS.gene03401:CDS
TGATTTGATAGTAGACATAC+CGG 0.592196 6.2:+33948987 MS.gene03401:CDS
ATAAAGCAAAGAATGAAGGA+TGG 0.594889 6.2:+33950435 MS.gene03401:CDS
AACTTGCCAAATGATTCTAA+AGG 0.596703 6.2:+33949096 MS.gene03401:CDS
AGAATCTTGAGATGTTGGGG+TGG 0.600770 6.2:+33950074 MS.gene03401:CDS
AAGAAGAATGAGAGATTGTG+GGG 0.613511 6.2:+33950275 MS.gene03401:CDS
GAAATCATTGAGCGGCGTTG+GGG 0.616965 6.2:+33949174 MS.gene03401:CDS
AAATGATTCTAAAGGAGCTG+AGG 0.620031 6.2:+33949104 MS.gene03401:CDS
AAATGTCAAAAGGGTTCACA+AGG 0.623824 6.2:+33949439 MS.gene03401:CDS
GAGAGAATCTTGAGATGTTG+GGG 0.624381 6.2:+33950071 MS.gene03401:CDS
CAGTTGATGATGTGAAAGCA+AGG 0.625134 6.2:+33949214 MS.gene03401:CDS
ATCCTTTGTAAACTTGTGAA+GGG 0.631092 6.2:-33948939 None:intergenic
TCTTTCAATAGGTCTAGTAA+GGG 0.636031 6.2:-33949384 None:intergenic
TAAGTCACCAAGGTCCCCAA+AGG 0.636212 6.2:+33947959 MS.gene03401:CDS
CAATCACATTCTTCCAACGA+TGG 0.647421 6.2:+33948023 MS.gene03401:CDS
TGTCATAGTTTGGATCATTG+GGG 0.648251 6.2:-33948403 None:intergenic
TGTTGCAACAACATCATCTG+TGG 0.660123 6.2:-33948773 None:intergenic
CCATTGACGACATCGTCAGG+TGG 0.664184 6.2:-33949834 None:intergenic
TTTCTTCTCCTAAGTCACCA+AGG 0.676254 6.2:+33947949 MS.gene03401:CDS
TACACGCTGAAATCATTGAG+CGG 0.691108 6.2:+33949166 MS.gene03401:CDS
TTGGAGGAATATGAATCTGG+TGG 0.719160 6.2:+33950158 MS.gene03401:CDS
TCCAAACTATGACAGCACTG+AGG 0.800309 6.2:+33948412 MS.gene03401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAACTATGTATCAAA+TGG + chr6.2:33950325-33950344 MS.gene03401:CDS 15.0%
!!! AACTATTTATATTGTTTTGT+AGG + chr6.2:33948663-33948682 MS.gene03401:intron 15.0%
!! AAAAAGATCCATATAAGTTT+AGG - chr6.2:33948184-33948203 None:intergenic 20.0%
!! ATTCAAGTCCAAAAAATAAT+AGG + chr6.2:33948000-33948019 MS.gene03401:CDS 20.0%
!! TTGAAAAGTTAAAAGACAAA+TGG - chr6.2:33948079-33948098 None:intergenic 20.0%
!!! TTTTCAAAATAGATCCATAT+AGG - chr6.2:33948112-33948131 None:intergenic 20.0%
! AAAGAATAGAGAGAAAGAAA+TGG + chr6.2:33949782-33949801 MS.gene03401:CDS 25.0%
! AAGATGTGAAAGATATGATA+GGG + chr6.2:33950129-33950148 MS.gene03401:CDS 25.0%
! ACAAAATAGTAACTGTATTC+TGG - chr6.2:33948826-33948845 None:intergenic 25.0%
! ACTATGTATCAAATGGTTAA+AGG + chr6.2:33950332-33950351 MS.gene03401:CDS 25.0%
! ACTATTTCATGATGAAAGAA+AGG - chr6.2:33949318-33949337 None:intergenic 25.0%
! ATAAATAGTTGCATAGTTGT+TGG - chr6.2:33948653-33948672 None:intergenic 25.0%
! ATGACTTGAATCTTGAAAAT+AGG + chr6.2:33948257-33948276 MS.gene03401:intron 25.0%
! GAAAAAAGCTACAATAATAG+TGG + chr6.2:33948738-33948757 MS.gene03401:CDS 25.0%
! TTGAAAGAATATGTAGTAAG+TGG + chr6.2:33949249-33949268 MS.gene03401:CDS 25.0%
! TTTCAACACCTAAACTTATA+TGG + chr6.2:33948173-33948192 MS.gene03401:intron 25.0%
!! TATCAAATGGTTAAAGGTTT+TGG + chr6.2:33950338-33950357 MS.gene03401:CDS 25.0%
!! TCAATACTTGATAACCTATA+TGG + chr6.2:33948095-33948114 MS.gene03401:intron 25.0%
!!! TGTGATTGCCTATTATTTTT+TGG - chr6.2:33948011-33948030 None:intergenic 25.0%
AAAAGAAGAATGAGAGATTG+TGG + chr6.2:33950273-33950292 MS.gene03401:CDS 30.0%
AAAGAAGAATGAGAGATTGT+GGG + chr6.2:33950274-33950293 MS.gene03401:CDS 30.0%
AACTTGCCAAATGATTCTAA+AGG + chr6.2:33949096-33949115 MS.gene03401:CDS 30.0%
AATCCTTTGTAAACTTGTGA+AGG - chr6.2:33948943-33948962 None:intergenic 30.0%
ACAACCTCATGATGAAAAAA+TGG - chr6.2:33950227-33950246 None:intergenic 30.0%
ACACGACAAAGAAAAAGAAA+TGG + chr6.2:33948876-33948895 MS.gene03401:CDS 30.0%
AGATATGATAGGGAAATTGT+TGG + chr6.2:33950139-33950158 MS.gene03401:CDS 30.0%
AGGATTGATCATAATGAAAC+AGG - chr6.2:33948152-33948171 None:intergenic 30.0%
ATAAAGCAAAGAATGAAGGA+TGG + chr6.2:33950435-33950454 MS.gene03401:CDS 30.0%
ATCCTTTGTAAACTTGTGAA+GGG - chr6.2:33948942-33948961 None:intergenic 30.0%
ATGAGTGAAGTTAGAGAAAT+CGG + chr6.2:33948796-33948815 MS.gene03401:CDS 30.0%
GAAGATGTGAAAGATATGAT+AGG + chr6.2:33950128-33950147 MS.gene03401:CDS 30.0%
GAAGCTAATAACATTAGCAA+TGG + chr6.2:33949755-33949774 MS.gene03401:CDS 30.0%
GTTCAAAATCTTCTATGCAA+CGG - chr6.2:33948539-33948558 None:intergenic 30.0%
TCTTTCAATAGGTCTAGTAA+GGG - chr6.2:33949387-33949406 None:intergenic 30.0%
TGGAATACTTCAACAACTAA+TGG + chr6.2:33949509-33949528 MS.gene03401:CDS 30.0%
TGTATAAGTCAAGATTCCAT+TGG + chr6.2:33949996-33950015 MS.gene03401:CDS 30.0%
TTCTTTCAATAGGTCTAGTA+AGG - chr6.2:33949388-33949407 None:intergenic 30.0%
TTGCAGCAACTTACATTATA+TGG + chr6.2:33948464-33948483 MS.gene03401:intron 30.0%
! ATCTGTTTCTTCAAAAATGC+CGG - chr6.2:33949072-33949091 None:intergenic 30.0%
! GTTGATAAAGCAAAGAATGA+AGG + chr6.2:33950431-33950450 MS.gene03401:CDS 30.0%
! TCTTGTATTGTGTTCTTTTC+AGG - chr6.2:33949594-33949613 None:intergenic 30.0%
! TGATTTGATAGTAGACATAC+CGG + chr6.2:33948987-33949006 MS.gene03401:CDS 30.0%
!! ATAAGTTTAGGTGTTGAAAG+AGG - chr6.2:33948172-33948191 None:intergenic 30.0%
!! ATTCAAGAGTACTTTCTATC+AGG + chr6.2:33949654-33949673 MS.gene03401:CDS 30.0%
!!! CTTAAAGAGTGTTTTGAATC+TGG + chr6.2:33950302-33950321 MS.gene03401:CDS 30.0%
!!! TATGCCATTTTTTCATCATG+AGG + chr6.2:33950220-33950239 MS.gene03401:CDS 30.0%
AAAAGAAGCTGACGATACAA+AGG - chr6.2:33948220-33948239 None:intergenic 35.0%
AAAGAAAACGAACACTGCAT+TGG + chr6.2:33948705-33948724 MS.gene03401:CDS 35.0%
AAATGTCAAAAGGGTTCACA+AGG + chr6.2:33949439-33949458 MS.gene03401:CDS 35.0%
AACACAAGCCAAATGTCAAA+AGG + chr6.2:33949429-33949448 MS.gene03401:CDS 35.0%
AAGAAGAATGAGAGATTGTG+GGG + chr6.2:33950275-33950294 MS.gene03401:CDS 35.0%
AATAACACTCCACCTTTCTT+TGG - chr6.2:33948053-33948072 None:intergenic 35.0%
ACACAAGCCAAATGTCAAAA+GGG + chr6.2:33949430-33949449 MS.gene03401:CDS 35.0%
AGATTCACAAGATTCAACCA+CGG - chr6.2:33948309-33948328 None:intergenic 35.0%
AGTGAAAAGAGCTCTTATCA+TGG + chr6.2:33949335-33949354 MS.gene03401:CDS 35.0%
ATGCGATTTGAATATAACCG+TGG + chr6.2:33948289-33948308 MS.gene03401:intron 35.0%
ATTCACCAAACTAGTCGAAT+CGG + chr6.2:33948960-33948979 MS.gene03401:CDS 35.0%
CAAGAGAACAACAAAAACTG+TGG + chr6.2:33949708-33949727 MS.gene03401:CDS 35.0%
CTGTCATAGTTTGGATCATT+GGG - chr6.2:33948407-33948426 None:intergenic 35.0%
TAGAGAGAAAGAAATGGCTT+CGG + chr6.2:33949788-33949807 MS.gene03401:CDS 35.0%
TATGATAGGGAAATTGTTGG+AGG + chr6.2:33950142-33950161 MS.gene03401:CDS 35.0%
TCAACAACTAATGGCTAAAG+CGG + chr6.2:33949518-33949537 MS.gene03401:CDS 35.0%
TCAATGATTTCAGCGTGTAA+AGG - chr6.2:33949165-33949184 None:intergenic 35.0%
TCTTGTGAATCTCATTGTAC+AGG + chr6.2:33948317-33948336 MS.gene03401:intron 35.0%
TGAAACACATAACCAACCTT+CGG - chr6.2:33949547-33949566 None:intergenic 35.0%
TGAGAGAATCTTGAGATGTT+GGG + chr6.2:33950070-33950089 MS.gene03401:CDS 35.0%
TGAGGTTGTGAAGAAAAGTT+TGG + chr6.2:33950238-33950257 MS.gene03401:CDS 35.0%
TGTAGATGCATGAAAGAGTT+AGG + chr6.2:33950197-33950216 MS.gene03401:CDS 35.0%
TGTCATAGTTTGGATCATTG+GGG - chr6.2:33948406-33948425 None:intergenic 35.0%
TTAGGAGAAGAAAGTTGCAA+AGG - chr6.2:33947942-33947961 None:intergenic 35.0%
TTCAAGAATGCTACAGAGAA+TGG + chr6.2:33950476-33950495 MS.gene03401:CDS 35.0%
TTGTTGGAGGAATATGAATC+TGG + chr6.2:33950155-33950174 MS.gene03401:CDS 35.0%
! AAAGCTTGTTTCGATGTCAA+TGG + chr6.2:33948849-33948868 MS.gene03401:CDS 35.0%
! AAATGATTCTAAAGGAGCTG+AGG + chr6.2:33949104-33949123 MS.gene03401:CDS 35.0%
! ACAGCATTGGATCAAATCTT+TGG + chr6.2:33948587-33948606 MS.gene03401:intron 35.0%
! ATCTGGTGGTGATAAAAAAG+AGG + chr6.2:33950172-33950191 MS.gene03401:CDS 35.0%
! TGAAGAAGCTCTTGATGATT+TGG + chr6.2:33950367-33950386 MS.gene03401:CDS 35.0%
! TGATACTGCTTTAGACAATC+CGG + chr6.2:33949884-33949903 MS.gene03401:CDS 35.0%
! TTGTGAACCCTTTTGACATT+TGG - chr6.2:33949440-33949459 None:intergenic 35.0%
!! TCAGCTCCTTTAGAATCATT+TGG - chr6.2:33949105-33949124 None:intergenic 35.0%
!! TGCTATGTTTCTAGCAAGAT+CGG + chr6.2:33949923-33949942 MS.gene03401:CDS 35.0%
ACATCTTCAATTTCCCATCC+TGG - chr6.2:33950116-33950135 None:intergenic 40.0%
CAATCACATTCTTCCAACGA+TGG + chr6.2:33948023-33948042 MS.gene03401:CDS 40.0%
CACCCTTCACAAGTTTACAA+AGG + chr6.2:33948937-33948956 MS.gene03401:CDS 40.0%
CCAATATCTTCAAGCTGTTG+CGG - chr6.2:33949969-33949988 None:intergenic 40.0%
CGATCTGTGATTTACAGCAT+TGG + chr6.2:33948574-33948593 MS.gene03401:intron 40.0%
CTTCAGCAGCTTCTTTCAAT+AGG - chr6.2:33949398-33949417 None:intergenic 40.0%
GAGAGAATCTTGAGATGTTG+GGG + chr6.2:33950071-33950090 MS.gene03401:CDS 40.0%
GATAGTAGACATACCGGATA+CGG + chr6.2:33948993-33949012 MS.gene03401:CDS 40.0%
GCTAGAATATCAACCGTATC+CGG - chr6.2:33949009-33949028 None:intergenic 40.0%
GCTGTCATAGTTTGGATCAT+TGG - chr6.2:33948408-33948427 None:intergenic 40.0%
GTGAGAGAATCTTGAGATGT+TGG + chr6.2:33950069-33950088 MS.gene03401:CDS 40.0%
TACACGCTGAAATCATTGAG+CGG + chr6.2:33949166-33949185 MS.gene03401:CDS 40.0%
TGCAAAGGAGAAACAGTTAC+TGG - chr6.2:33947927-33947946 None:intergenic 40.0%
TGTGAATCTCATTGTACAGG+TGG + chr6.2:33948320-33948339 MS.gene03401:intron 40.0%
TGTTGCAACAACATCATCTG+TGG - chr6.2:33948776-33948795 None:intergenic 40.0%
TGTTTCTTCAAAAATGCCGG+CGG - chr6.2:33949069-33949088 None:intergenic 40.0%
TTGAAAGAAGCTGCTGAAGA+AGG + chr6.2:33949399-33949418 MS.gene03401:CDS 40.0%
TTGCTAAAAGCAAGACTTGC+TGG + chr6.2:33950047-33950066 MS.gene03401:CDS 40.0%
TTGGAGGAATATGAATCTGG+TGG + chr6.2:33950158-33950177 MS.gene03401:CDS 40.0%
TTTCTTCTCCTAAGTCACCA+AGG + chr6.2:33947949-33947968 MS.gene03401:CDS 40.0%
! AGCTCTTGATGATTTGGCTT+TGG + chr6.2:33950373-33950392 MS.gene03401:CDS 40.0%
! GCAAACTGATTCTTAGCATC+AGG - chr6.2:33950404-33950423 None:intergenic 40.0%
! TGGAAGCAAAGTGCTTCAAA+TGG + chr6.2:33950016-33950035 MS.gene03401:CDS 40.0%
! TTGAAGCACTTTGCTTCCAA+TGG - chr6.2:33950015-33950034 None:intergenic 40.0%
!! CAGTTGATGATGTGAAAGCA+AGG + chr6.2:33949214-33949233 MS.gene03401:CDS 40.0%
AAACCATTGACGACATCGTC+AGG - chr6.2:33949840-33949859 None:intergenic 45.0%
AACGATGGACGTCCAAAGAA+AGG + chr6.2:33948038-33948057 MS.gene03401:CDS 45.0%
AAGAGCTCTTATCATGGCGA+TGG + chr6.2:33949341-33949360 MS.gene03401:CDS 45.0%
AATCTTGAGATGTTGGGGTG+GGG + chr6.2:33950076-33950095 MS.gene03401:CDS 45.0%
ACCTCAGTGCTGTCATAGTT+TGG - chr6.2:33948416-33948435 None:intergenic 45.0%
AGAATCTTGAGATGTTGGGG+TGG + chr6.2:33950074-33950093 MS.gene03401:CDS 45.0%
CCGCAACAGCTTGAAGATAT+TGG + chr6.2:33949966-33949985 MS.gene03401:CDS 45.0%
GAATCTTGAGATGTTGGGGT+GGG + chr6.2:33950075-33950094 MS.gene03401:CDS 45.0%
GCAAGATCTTCAACGACTAC+CGG - chr6.2:33949906-33949925 None:intergenic 45.0%
TCCAAACTATGACAGCACTG+AGG + chr6.2:33948412-33948431 MS.gene03401:CDS 45.0%
TCTCATTGTACAGGTGGTTC+TGG + chr6.2:33948326-33948345 MS.gene03401:intron 45.0%
TGAAATCATTGAGCGGCGTT+GGG + chr6.2:33949173-33949192 MS.gene03401:CDS 45.0%
TGGAAGTAGCAAACCAGGAT+GGG + chr6.2:33950100-33950119 MS.gene03401:CDS 45.0%
TTTCTTTGGACGTCCATCGT+TGG - chr6.2:33948039-33948058 None:intergenic 45.0%
! GCTTTTCATAGCTAGAGCTG+TGG + chr6.2:33949029-33949048 MS.gene03401:CDS 45.0%
!! ATCAGCCGATTCGACTAGTT+TGG - chr6.2:33948968-33948987 None:intergenic 45.0%
ATCTTGAGATGTTGGGGTGG+GGG + chr6.2:33950077-33950096 MS.gene03401:CDS 50.0%
CTGAAATCATTGAGCGGCGT+TGG + chr6.2:33949172-33949191 MS.gene03401:CDS 50.0%
GAAATCATTGAGCGGCGTTG+GGG + chr6.2:33949174-33949193 MS.gene03401:CDS 50.0%
GATGGACGTCCAAAGAAAGG+TGG + chr6.2:33948041-33948060 MS.gene03401:intron 50.0%
GTGGAAGTAGCAAACCAGGA+TGG + chr6.2:33950099-33950118 MS.gene03401:CDS 50.0%
TAAGTCACCAAGGTCCCCAA+AGG + chr6.2:33947959-33947978 MS.gene03401:CDS 50.0%
TGTTTCAAGCAATCCACCCC+AGG - chr6.2:33948363-33948382 None:intergenic 50.0%
! TGAAGTATTCCACGCGCGTT+TGG - chr6.2:33949501-33949520 None:intergenic 50.0%
! TTTGGGGACCTTGGTGACTT+AGG - chr6.2:33947960-33947979 None:intergenic 50.0%
!! ACAGGTGGTTCTGGTGGTAA+AGG + chr6.2:33948335-33948354 MS.gene03401:intron 50.0%
!! CAGCGTGTAAAGGTGCTGTT+AGG - chr6.2:33949155-33949174 None:intergenic 50.0%
!! CATTGTACAGGTGGTTCTGG+TGG + chr6.2:33948329-33948348 MS.gene03401:intron 50.0%
!! TTCTGGTGGTAAAGGCACCT+GGG + chr6.2:33948343-33948362 MS.gene03401:CDS 50.0%
ATGGCTAAAGCGGCTTCCGA+AGG + chr6.2:33949528-33949547 MS.gene03401:CDS 55.0%
CCACCTGACGATGTCGTCAA+TGG + chr6.2:33949834-33949853 MS.gene03401:CDS 55.0%
CCATTGACGACATCGTCAGG+TGG - chr6.2:33949837-33949856 None:intergenic 55.0%
CTAAAGCGGCTTCCGAAGGT+TGG + chr6.2:33949532-33949551 MS.gene03401:CDS 55.0%
CTCGATATACCAAACGCGCG+TGG + chr6.2:33949489-33949508 MS.gene03401:CDS 55.0%
GGTTGACGACATTCTTCCGC+CGG + chr6.2:33949050-33949069 MS.gene03401:CDS 55.0%
! TCCCCAAAGGCGCAAGTCAA+CGG + chr6.2:33947972-33947991 MS.gene03401:CDS 55.0%
!! GTTCTGGTGGTAAAGGCACC+TGG + chr6.2:33948342-33948361 MS.gene03401:CDS 55.0%
!! TCTGGTGGTAAAGGCACCTG+GGG + chr6.2:33948344-33948363 MS.gene03401:CDS 55.0%
!! TGCCGTTGACTTGCGCCTTT+GGG - chr6.2:33947977-33947996 None:intergenic 55.0%
GGGGGTGGAAGTAGCAAACC+AGG + chr6.2:33950095-33950114 MS.gene03401:CDS 60.0%
TTGAGATGTTGGGGTGGGGG+TGG + chr6.2:33950080-33950099 MS.gene03401:CDS 60.0%
! ACTTGCGCCTTTGGGGACCT+TGG - chr6.2:33947969-33947988 None:intergenic 60.0%
! ATCATTGAGCGGCGTTGGGG+AGG + chr6.2:33949177-33949196 MS.gene03401:CDS 60.0%
!! CTGCCGTTGACTTGCGCCTT+TGG - chr6.2:33947978-33947997 None:intergenic 60.0%
!! GCCGTTGACTTGCGCCTTTG+GGG - chr6.2:33947976-33947995 None:intergenic 60.0%
!! GGTGGTAAAGGCACCTGGGG+TGG + chr6.2:33948347-33948366 MS.gene03401:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 33947852 33950508 33947852 ID=MS.gene03401
chr6.2 mRNA 33947852 33950508 33947852 ID=MS.gene03401.t1;Parent=MS.gene03401
chr6.2 exon 33947852 33948059 33947852 ID=MS.gene03401.t1.exon1;Parent=MS.gene03401.t1
chr6.2 CDS 33947852 33948059 33947852 ID=cds.MS.gene03401.t1;Parent=MS.gene03401.t1
chr6.2 exon 33948339 33948433 33948339 ID=MS.gene03401.t1.exon2;Parent=MS.gene03401.t1
chr6.2 CDS 33948339 33948433 33948339 ID=cds.MS.gene03401.t1;Parent=MS.gene03401.t1
chr6.2 exon 33948685 33950508 33948685 ID=MS.gene03401.t1.exon3;Parent=MS.gene03401.t1
chr6.2 CDS 33948685 33950508 33948685 ID=cds.MS.gene03401.t1;Parent=MS.gene03401.t1
Gene Sequence

>MS.gene03401

ATGGATTTCAATGATGGCTATGTATCGAAAGAGCATCTCGAGCTTCATCGATCTGCGTCAGAAAGTGTTGATCCAGTAACTGTTTCTCCTTTGCAACTTTCTTCTCCTAAGTCACCAAGGTCCCCAAAGGCGCAAGTCAACGGCAGCAATTCAAGTCCAAAAAATAATAGGCAATCACATTCTTCCAACGATGGACGTCCAAAGAAAGGTGGAGTGTTATTTTACCATTTGTCTTTTAACTTTTCAATACTTGATAACCTATATGGATCTATTTTGAAAATTAATCTCGTCTTGAATCCTGTTTCATTATGATCAATCCTCTTTCAACACCTAAACTTATATGGATCTTTTTTTTTTTTTTGTCACCTTTGTATCGTCAGCTTCTTTTCTTTTGTCATTTGATTTATGACTTGAATCTTGAAAATAGGTCTTCTGATATGCGATTTGAATATAACCGTGGTTGAATCTTGTGAATCTCATTGTACAGGTGGTTCTGGTGGTAAAGGCACCTGGGGTGGATTGCTTGAAACAGATGATATGAACTTACTTGACCCCAATGATCCAAACTATGACAGCACTGAGGTATCGAGTTATTATTTCATCATTATCTTATTGCAGCAACTTACATTATATGGATCAAATCAGTATTGTTCAAATATCAGCTATAGAAGCGCTATAGCACAACCGTTGCATAGAAGATTTTGAACAAACAGCACTTTACACGATCTGTGATTTACAGCATTGGATCAAATCTTTGGTCATTTATTTTGTTAAAACTGTAATTTTTGTTATAAAATACCAACAACTATGCAACTATTTATATTGTTTTGTAGGAATTTGATGATTCAAATGAAAAGAAAACGAACACTGCATTGGAAGAGTACAAGAAAAAAGCTACAATAATAGTGGAAGAATACTTTGCCACAGATGATGTTGTTGCAACAATGAGTGAAGTTAGAGAAATCGGAAAACCAGAATACAGTTACTATTTTGTCAAAAAGCTTGTTTCGATGTCAATGGACAGACACGACAAAGAAAAAGAAATGGCTGCAATTCTGTTATCTGCACTTTATGCTGACATAATTCACCCTTCACAAGTTTACAAAGGATTCACCAAACTAGTCGAATCGGCTGATGATTTGATAGTAGACATACCGGATACGGTTGATATTCTAGCGCTTTTCATAGCTAGAGCTGTGGTTGACGACATTCTTCCGCCGGCATTTTTGAAGAAACAGATAGCAAACTTGCCAAATGATTCTAAAGGAGCTGAGGTTTTAAAGAAAGCTGAGAAAAGCTACCTAACAGCACCTTTACACGCTGAAATCATTGAGCGGCGTTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTGAAAGCAAGGATAAACAATTTCTTGAAAGAATATGTAGTAAGTGGTGACAAGACAGAAGCTTTTAGATGCATCAAAGACTTGAATGTTCCTTTCTTTCATCATGAAATAGTGAAAAGAGCTCTTATCATGGCGATGGAAAAACGACAAGCAGAAGCTCCCTTACTAGACCTATTGAAAGAAGCTGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCAAAAGGGTTCACAAGGTTGATCGAAACTGTCGATGATTTATCGCTCGATATACCAAACGCGCGTGGAATACTTCAACAACTAATGGCTAAAGCGGCTTCCGAAGGTTGGTTATGTGTTTCATCAGTAAAATCACTATCAATTGAGCCTGAAAAGAACACAATACAAGAAAATGTTGCTAAAAGTTTCAAGATGAAAACTCAATCGATCATTCAAGAGTACTTTCTATCAGGTGATATATTCGAAGTGATTAGTTGCTTAGAACAAGAGAACAACAAAAACTGTGGTGAACTAAATGCAATCTTTGTTAAGAAGCTAATAACATTAGCAATGGATAGAAAGAATAGAGAGAAAGAAATGGCTTCGGTGTTACTTTCATCGCTTTGTTTTCCACCTGACGATGTCGTCAATGGTTTTGTGATGCTAATTGAATCAGCAGATGATACTGCTTTAGACAATCCGGTAGTCGTTGAAGATCTTGCTATGTTTCTAGCAAGATCGGTAGTTGACGAAGTTTTAGCACCGCAACAGCTTGAAGATATTGGAACACAATGTATAAGTCAAGATTCCATTGGAAGCAAAGTGCTTCAAATGGCAAAGTCATTGCTAAAAGCAAGACTTGCTGGTGAGAGAATCTTGAGATGTTGGGGTGGGGGTGGAAGTAGCAAACCAGGATGGGAAATTGAAGATGTGAAAGATATGATAGGGAAATTGTTGGAGGAATATGAATCTGGTGGTGATAAAAAAGAGGCTTGTAGATGCATGAAAGAGTTAGGTATGCCATTTTTTCATCATGAGGTTGTGAAGAAAAGTTTGGTGAAAATTATTGAAAAGAAGAATGAGAGATTGTGGGGTTTACTTAAAGAGTGTTTTGAATCTGGATTAATAACTATGTATCAAATGGTTAAAGGTTTTGGAAGAGTTGAAGAAGCTCTTGATGATTTGGCTTTGGATGTTCCTGATGCTAAGAATCAGTTTGCATATTATGTTGATAAAGCAAAGAATGAAGGATGGTTAGATAGTTCATTTTGTTTCAAGAATGCTACAGAGAATGGCACATGCTAA
Protein sequence

>MS.gene03401.t1

MDFNDGYVSKEHLELHRSASESVDPVTVSPLQLSSPKSPRSPKAQVNGSNSSPKNNRQSHSSNDGRPKKGGSGGKGTWGGLLETDDMNLLDPNDPNYDSTEEFDDSNEKKTNTALEEYKKKATIIVEEYFATDDVVATMSEVREIGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLPNDSKGAEVLKKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKTEAFRCIKDLNVPFFHHEIVKRALIMAMEKRQAEAPLLDLLKEAAEEGFINTSQMSKGFTRLIETVDDLSLDIPNARGILQQLMAKAASEGWLCVSSVKSLSIEPEKNTIQENVAKSFKMKTQSIIQEYFLSGDIFEVISCLEQENNKNCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPPDDVVNGFVMLIESADDTALDNPVVVEDLAMFLARSVVDEVLAPQQLEDIGTQCISQDSIGSKVLQMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEEYESGGDKKEACRCMKELGMPFFHHEVVKKSLVKIIEKKNERLWGLLKECFESGLITMYQMVKGFGRVEEALDDLALDVPDAKNQFAYYVDKAKNEGWLDSSFCFKNATENGTC