AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03402.t1 MTR_6g034560 90.952 641 11 2 11 604 70 710 0.0 1171
MS.gene03402.t1 MTR_4g104360 53.016 630 239 6 12 593 76 696 0.0 607
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03402.t1 AT1G22730 59.161 644 203 7 14 603 51 688 0.0 737
MS.gene03402.t1 AT5G63190 49.842 632 258 8 12 593 74 696 0.0 597
MS.gene03402.t1 AT5G63190 49.842 632 258 8 12 593 74 696 0.0 597
MS.gene03402.t1 AT4G24800 50.564 621 249 6 22 593 80 691 0.0 582
MS.gene03402.t1 AT4G24800 42.160 287 164 2 56 342 412 696 3.02e-68 235
MS.gene03402.t1 AT4G24800 50.564 621 249 6 22 593 80 691 0.0 582
MS.gene03402.t1 AT4G24800 42.160 287 164 2 56 342 412 696 3.02e-68 235
MS.gene03402.t1 AT4G24800 50.564 621 249 6 22 593 80 691 0.0 582
MS.gene03402.t1 AT4G24800 42.160 287 164 2 56 342 412 696 3.02e-68 235
MS.gene03402.t1 AT4G24800 50.564 621 249 6 22 593 80 691 0.0 582
MS.gene03402.t1 AT4G24800 42.160 287 164 2 56 342 412 696 3.02e-68 235
MS.gene03402.t1 AT3G48390 48.294 586 243 7 56 593 54 627 0.0 540
MS.gene03402.t1 AT3G48390 43.729 295 161 3 39 333 334 623 5.39e-72 243

Find 98 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAATAGTAGCTGTATTC+TGG 0.235608 6.2:-33958721 None:intergenic
CTGAGTGAAGTTAGAGAAAT+TGG 0.248877 6.2:+33958694 MS.gene03402:CDS
TGAAGAAGCTCTTGATGATT+TGG 0.280860 6.2:+33960265 MS.gene03402:CDS
CGTCGGCAGCTTCTTTCAAT+AGG 0.307702 6.2:-33959293 None:intergenic
CCGCAACAGCTTGAAGATAT+TGG 0.323766 6.2:+33959864 MS.gene03402:CDS
CTGTCATAGTTCGGATCATT+GGG 0.332315 6.2:-33958351 None:intergenic
AGCTCTTGATGATTTGGCTT+TGG 0.347710 6.2:+33960271 MS.gene03402:CDS
CCAACGCCGCTCGATGATTT+CGG 0.349362 6.2:-33959070 None:intergenic
ATCTTGAGATGTTGGGGTGG+GGG 0.350219 6.2:+33959975 MS.gene03402:CDS
ATCGGCTGATTCAACTAGTT+TGG 0.351801 6.2:-33958863 None:intergenic
CGAAATCATCGAGCGGCGTT+GGG 0.359499 6.2:+33959071 MS.gene03402:CDS
GAAGATGTGAAAGATATGAT+AGG 0.364316 6.2:+33960026 MS.gene03402:CDS
TTGCTAAAAGCAAGACTTGC+TGG 0.369049 6.2:+33959945 MS.gene03402:CDS
TGTCATTGTACAGGCGGTTC+TGG 0.376555 6.2:+33958273 MS.gene03402:CDS
TCAGCTCCTTTAGAATCATT+TGG 0.387224 6.2:-33959000 None:intergenic
GTTCTGGTGGTAAAGGCACC+TGG 0.406330 6.2:+33958289 MS.gene03402:CDS
AGTGAAAAGAGCTCTTATAA+TGG 0.408893 6.2:+33959233 MS.gene03402:CDS
TGAAGTATTCCGCGTGCGTT+CGG 0.411426 6.2:-33959396 None:intergenic
CGCTATGTTTCTTGCAAGAT+CGG 0.413923 6.2:+33959821 MS.gene03402:CDS
ACTATTTCATGATGAAAGAA+AGG 0.422014 6.2:-33959213 None:intergenic
TTCAAGAATGCAACAGAGAA+TGG 0.426913 6.2:+33960374 MS.gene03402:CDS
TGTAGATGCATGAAAGAGTT+AGG 0.427178 6.2:+33960095 MS.gene03402:CDS
TCTTTCAATAGGTCTAATAA+TGG 0.427533 6.2:-33959282 None:intergenic
CCGAAATCATCGAGCGGCGT+TGG 0.433939 6.2:+33959070 MS.gene03402:CDS
ACATCTTCAATTTCCCATCC+TGG 0.435001 6.2:-33960011 None:intergenic
AACACAAGCCAAATGTCAAA+AGG 0.438065 6.2:+33959327 MS.gene03402:CDS
AAAGAATAGAGAGAAAGAAA+TGG 0.442612 6.2:+33959680 MS.gene03402:CDS
TGAGAGAATCTTGAGATGTT+GGG 0.443902 6.2:+33959968 MS.gene03402:CDS
TTGAAGCACTTTGCTTCCAA+TGG 0.444863 6.2:-33959910 None:intergenic
CCACCTGACGATGTCGTCAA+TGG 0.446888 6.2:+33959732 MS.gene03402:CDS
GCTGTCATAGTTCGGATCAT+TGG 0.450298 6.2:-33958352 None:intergenic
AAAGCTTGTTTCGATGTCAA+TGG 0.452801 6.2:+33958747 MS.gene03402:CDS
TTCTGGTGGTAAAGGCACCT+GGG 0.454122 6.2:+33958290 MS.gene03402:CDS
ACCTCAGTGCTGTCATAGTT+CGG 0.456364 6.2:-33958360 None:intergenic
GGTGGTAAAGGCACCTGGGG+TGG 0.457361 6.2:+33958294 MS.gene03402:CDS
AAACCATTGACGACATCGTC+AGG 0.469326 6.2:-33959735 None:intergenic
AATCTTGAGATGTTGGGGTG+GGG 0.469675 6.2:+33959974 MS.gene03402:CDS
GCAAACTGATTCTTAGCATC+AGG 0.470425 6.2:-33960299 None:intergenic
GCTAGAATATCAACCGTGTC+CGG 0.480548 6.2:-33958904 None:intergenic
GTGAGAGAATCTTGAGATGT+TGG 0.499361 6.2:+33959967 MS.gene03402:CDS
TTGAAAGAATATGTTGTAAG+TGG 0.503740 6.2:+33959147 MS.gene03402:CDS
AGATATGATAGGGAAATTGT+TGG 0.506777 6.2:+33960037 MS.gene03402:CDS
TTGTTGGAGCAATATGAATC+TGG 0.517286 6.2:+33960053 MS.gene03402:CDS
TGGAAGCAAAGTGCTTCAAA+TGG 0.519682 6.2:+33959914 MS.gene03402:CDS
GAATCTTGAGATGTTGGGGT+GGG 0.520362 6.2:+33959973 MS.gene03402:CDS
AAGATGTGAAAGATATGATA+GGG 0.521203 6.2:+33960027 MS.gene03402:CDS
TAGAGAGAAAGAAATGGCTT+CGG 0.528261 6.2:+33959686 MS.gene03402:CDS
TGGAAGTAGCAAACCAGGAT+GGG 0.530192 6.2:+33959998 MS.gene03402:CDS
ACAGGCGGTTCTGGTGGTAA+AGG 0.532014 6.2:+33958282 MS.gene03402:CDS
TGATACTGCTTTAGACAATC+CGG 0.532228 6.2:+33959782 MS.gene03402:CDS
GTGGAAGTAGCAAACCAGGA+TGG 0.539492 6.2:+33959997 MS.gene03402:CDS
ACACAAGCCAAATGTCAAAA+GGG 0.540041 6.2:+33959328 MS.gene03402:CDS
AAAATCACTCTCAATTGAGC+CGG 0.541668 6.2:+33959470 MS.gene03402:CDS
CCAATATCTTCAAGCTGTTG+CGG 0.544667 6.2:-33959864 None:intergenic
TCGATGATTTCGGCGTGTAA+AGG 0.546232 6.2:-33959060 None:intergenic
AAGAGCTCTTATAATGGCGA+TGG 0.546680 6.2:+33959239 MS.gene03402:CDS
AATCCTTTGTAAACTTGTGA+AGG 0.549640 6.2:-33958838 None:intergenic
TGAAACACATAACCAACCTT+CGG 0.550911 6.2:-33959442 None:intergenic
TGTATAAGTCAAGATTCCAT+TGG 0.552180 6.2:+33959894 MS.gene03402:CDS
AACTTACCAAATGATTCTAA+AGG 0.552434 6.2:+33958994 MS.gene03402:CDS
CGAAAGCCGCGTCCGAAGGT+TGG 0.558063 6.2:+33959430 MS.gene03402:CDS
GAAGCTAATAACATTAGCAA+TGG 0.558746 6.2:+33959653 MS.gene03402:CDS
CGTCTCAAGCAATCCACCCC+AGG 0.559604 6.2:-33958307 None:intergenic
GCGAGATCTTCAACAACTAC+CGG 0.565943 6.2:-33959801 None:intergenic
ATCATCGAGCGGCGTTGGGG+AGG 0.567881 6.2:+33959075 MS.gene03402:CDS
TACAACAGTTGATGATGTGA+AGG 0.568694 6.2:+33959107 MS.gene03402:CDS
CACCCTTCACAAGTTTACAA+AGG 0.573720 6.2:+33958835 MS.gene03402:CDS
AAAGAAAACGAACACCGCAT+TGG 0.575126 6.2:+33958603 MS.gene03402:CDS
ACATAACCAACCTTCGGACG+CGG 0.576513 6.2:-33959436 None:intergenic
GGTTGACGACATTCTTCCAC+CGG 0.583258 6.2:+33958948 MS.gene03402:CDS
TCTTGTGAATGTCATTGTAC+AGG 0.586691 6.2:+33958264 MS.gene03402:CDS
ATGTCGAAAGCCGCGTCCGA+AGG 0.587109 6.2:+33959426 MS.gene03402:CDS
CTTTGCCACAGACGATGTTG+TGG 0.588372 6.2:+33958666 MS.gene03402:CDS
CATTGTACAGGCGGTTCTGG+TGG 0.588757 6.2:+33958276 MS.gene03402:CDS
TGATTTGATCGTAGACATAC+CGG 0.594791 6.2:+33958885 MS.gene03402:CDS
AGAATCTTGAGATGTTGGGG+TGG 0.600770 6.2:+33959972 MS.gene03402:CDS
AAATGATTCTAAAGGAGCTG+AGG 0.605077 6.2:+33959002 MS.gene03402:CDS
TCTGGTGGTAAAGGCACCTG+GGG 0.612250 6.2:+33958291 MS.gene03402:CDS
CAGTTGATGATGTGAAGGCA+AGG 0.614475 6.2:+33959112 MS.gene03402:CDS
TTGAAAGAAGCTGCCGACGA+AGG 0.616317 6.2:+33959297 MS.gene03402:CDS
GAAATCATCGAGCGGCGTTG+GGG 0.617622 6.2:+33959072 MS.gene03402:CDS
AAATGTCAAAAGGGTTCACA+AGG 0.623824 6.2:+33959337 MS.gene03402:CDS
GAGAGAATCTTGAGATGTTG+GGG 0.624381 6.2:+33959969 MS.gene03402:CDS
CTCGATATACCGAACGCACG+CGG 0.625689 6.2:+33959387 MS.gene03402:CDS
GATCGTAGACATACCGGACA+CGG 0.626185 6.2:+33958891 MS.gene03402:CDS
TATGTCTACGATCAAATCAT+CGG 0.626308 6.2:-33958881 None:intergenic
ATCCTTTGTAAACTTGTGAA+GGG 0.631092 6.2:-33958837 None:intergenic
TGTTGCCACAACATCGTCTG+TGG 0.631762 6.2:-33958671 None:intergenic
TGTGAATGTCATTGTACAGG+CGG 0.633405 6.2:+33958267 MS.gene03402:CDS
CTGGGGTGGATTGCTTGAGA+CGG 0.641152 6.2:+33958308 MS.gene03402:CDS
TGTGTTAATGAAACCTTCGT+CGG 0.643012 6.2:-33959310 None:intergenic
CCATTGACGACATCGTCAGG+TGG 0.664184 6.2:-33959732 None:intergenic
TTTCTTGTACTCTTCCAATG+CGG 0.689097 6.2:-33958617 None:intergenic
TGTCATAGTTCGGATCATTG+GGG 0.697339 6.2:-33958350 None:intergenic
ACATTCACAAGATTCAACCA+TGG 0.710478 6.2:-33958253 None:intergenic
TACACGCCGAAATCATCGAG+CGG 0.717950 6.2:+33959064 MS.gene03402:CDS
TTGGAGCAATATGAATCTGG+TGG 0.737366 6.2:+33960056 MS.gene03402:CDS
TCCGAACTATGACAGCACTG+AGG 0.805865 6.2:+33958359 MS.gene03402:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAACTATGTATCAAA+TGG + chr6.2:33960223-33960242 MS.gene03402:intron 15.0%
!!! AACTATATATATTGTTTTGT+AGG + chr6.2:33958561-33958580 MS.gene03402:intron 15.0%
! AAAAGAAAAATGAGAGATTG+TGG + chr6.2:33960171-33960190 MS.gene03402:intron 25.0%
! AAAGAAAAATGAGAGATTGT+GGG + chr6.2:33960172-33960191 MS.gene03402:intron 25.0%
! AAAGAATAGAGAGAAAGAAA+TGG + chr6.2:33959680-33959699 MS.gene03402:CDS 25.0%
! AACTTACCAAATGATTCTAA+AGG + chr6.2:33958994-33959013 MS.gene03402:CDS 25.0%
! AAGATGTGAAAGATATGATA+GGG + chr6.2:33960027-33960046 MS.gene03402:CDS 25.0%
! ACTATGTATCAAATGGTTAA+AGG + chr6.2:33960230-33960249 MS.gene03402:intron 25.0%
! ACTATTTCATGATGAAAGAA+AGG - chr6.2:33959216-33959235 None:intergenic 25.0%
! ATATATAGTTGCATAGTTGT+TGG - chr6.2:33958551-33958570 None:intergenic 25.0%
! TCTTTCAATAGGTCTAATAA+TGG - chr6.2:33959285-33959304 None:intergenic 25.0%
! TTGAAAGAATATGTTGTAAG+TGG + chr6.2:33959147-33959166 MS.gene03402:CDS 25.0%
!!! ATTCAAGAGTACTTTTTATC+AGG + chr6.2:33959552-33959571 MS.gene03402:CDS 25.0%
!!! TAAAAAGTACTCTTGAATGA+TGG - chr6.2:33959550-33959569 None:intergenic 25.0%
AAAAAGCAAAGAATGAAGGA+TGG + chr6.2:33960333-33960352 MS.gene03402:CDS 30.0%
AAGAAAAATGAGAGATTGTG+GGG + chr6.2:33960173-33960192 MS.gene03402:intron 30.0%
AATCCTTTGTAAACTTGTGA+AGG - chr6.2:33958841-33958860 None:intergenic 30.0%
ACAAAATAGTAGCTGTATTC+TGG - chr6.2:33958724-33958743 None:intergenic 30.0%
ACAACCTCATGATGAAAAAA+TGG - chr6.2:33960125-33960144 None:intergenic 30.0%
ACACGACAAAGAAAAAGAAA+TGG + chr6.2:33958774-33958793 MS.gene03402:CDS 30.0%
AGATATGATAGGGAAATTGT+TGG + chr6.2:33960037-33960056 MS.gene03402:CDS 30.0%
AGTGAAAAGAGCTCTTATAA+TGG + chr6.2:33959233-33959252 MS.gene03402:CDS 30.0%
ATCCTTTGTAAACTTGTGAA+GGG - chr6.2:33958840-33958859 None:intergenic 30.0%
GAAGATGTGAAAGATATGAT+AGG + chr6.2:33960026-33960045 MS.gene03402:CDS 30.0%
GAAGCTAATAACATTAGCAA+TGG + chr6.2:33959653-33959672 MS.gene03402:CDS 30.0%
GTTGAAAAAGCAAAGAATGA+AGG + chr6.2:33960329-33960348 MS.gene03402:CDS 30.0%
TATCAAATGGTTAAAGGCTT+TGG + chr6.2:33960236-33960255 MS.gene03402:intron 30.0%
TATGTCTACGATCAAATCAT+CGG - chr6.2:33958884-33958903 None:intergenic 30.0%
TGTATAAGTCAAGATTCCAT+TGG + chr6.2:33959894-33959913 MS.gene03402:CDS 30.0%
! ATAGCATTGGATCAAATCTT+TGG + chr6.2:33958485-33958504 MS.gene03402:intron 30.0%
! ATCTGTTTCTTCAAAAATGC+CGG - chr6.2:33958970-33958989 None:intergenic 30.0%
! TCTTGTATTGTGTTCTTTTC+CGG - chr6.2:33959492-33959511 None:intergenic 30.0%
!!! CTTAAAGAGTGTTTTGAATC+TGG + chr6.2:33960200-33960219 MS.gene03402:intron 30.0%
!!! TATGCCATTTTTTCATCATG+AGG + chr6.2:33960118-33960137 MS.gene03402:intron 30.0%
AAAATCACTCTCAATTGAGC+CGG + chr6.2:33959470-33959489 MS.gene03402:CDS 35.0%
AAATGTCAAAAGGGTTCACA+AGG + chr6.2:33959337-33959356 MS.gene03402:CDS 35.0%
AACACAAGCCAAATGTCAAA+AGG + chr6.2:33959327-33959346 MS.gene03402:CDS 35.0%
ACACAAGCCAAATGTCAAAA+GGG + chr6.2:33959328-33959347 MS.gene03402:CDS 35.0%
CAAGAGAACAACAAAAACTG+TGG + chr6.2:33959606-33959625 MS.gene03402:CDS 35.0%
CTGAGTGAAGTTAGAGAAAT+TGG + chr6.2:33958694-33958713 MS.gene03402:CDS 35.0%
GTTCAAATTCTGCTATGCAA+CGG - chr6.2:33958437-33958456 None:intergenic 35.0%
TAGAGAGAAAGAAATGGCTT+CGG + chr6.2:33959686-33959705 MS.gene03402:CDS 35.0%
TCTTGTGAATGTCATTGTAC+AGG + chr6.2:33958264-33958283 MS.gene03402:CDS 35.0%
TGAAACACATAACCAACCTT+CGG - chr6.2:33959445-33959464 None:intergenic 35.0%
TGAGAGAATCTTGAGATGTT+GGG + chr6.2:33959968-33959987 MS.gene03402:CDS 35.0%
TGAGGTTGTGAAGAAAAGTT+TGG + chr6.2:33960136-33960155 MS.gene03402:intron 35.0%
TGATTTGATCGTAGACATAC+CGG + chr6.2:33958885-33958904 MS.gene03402:CDS 35.0%
TGTAGATGCATGAAAGAGTT+AGG + chr6.2:33960095-33960114 MS.gene03402:CDS 35.0%
TGTGTTAATGAAACCTTCGT+CGG - chr6.2:33959313-33959332 None:intergenic 35.0%
TTCAAGAATGCAACAGAGAA+TGG + chr6.2:33960374-33960393 MS.gene03402:CDS 35.0%
TTGTTGGAGCAATATGAATC+TGG + chr6.2:33960053-33960072 MS.gene03402:CDS 35.0%
TTTCTTGTACTCTTCCAATG+CGG - chr6.2:33958620-33958639 None:intergenic 35.0%
! AAAGCTTGTTTCGATGTCAA+TGG + chr6.2:33958747-33958766 MS.gene03402:CDS 35.0%
! AAATGATTCTAAAGGAGCTG+AGG + chr6.2:33959002-33959021 MS.gene03402:CDS 35.0%
! ATCTGGTGGTGATAAAAAAG+AGG + chr6.2:33960070-33960089 MS.gene03402:CDS 35.0%
! TGAAGAAGCTCTTGATGATT+TGG + chr6.2:33960265-33960284 MS.gene03402:CDS 35.0%
! TGATACTGCTTTAGACAATC+CGG + chr6.2:33959782-33959801 MS.gene03402:CDS 35.0%
! TTGTGAACCCTTTTGACATT+TGG - chr6.2:33959338-33959357 None:intergenic 35.0%
!! TACAACAGTTGATGATGTGA+AGG + chr6.2:33959107-33959126 MS.gene03402:CDS 35.0%
!! TCAGCTCCTTTAGAATCATT+TGG - chr6.2:33959003-33959022 None:intergenic 35.0%
AAAGAAAACGAACACCGCAT+TGG + chr6.2:33958603-33958622 MS.gene03402:CDS 40.0%
AAGAGCTCTTATAATGGCGA+TGG + chr6.2:33959239-33959258 MS.gene03402:CDS 40.0%
ACATCTTCAATTTCCCATCC+TGG - chr6.2:33960014-33960033 None:intergenic 40.0%
ATGCTATAAATCGCAGATCG+CGG - chr6.2:33958472-33958491 None:intergenic 40.0%
CACCCTTCACAAGTTTACAA+AGG + chr6.2:33958835-33958854 MS.gene03402:CDS 40.0%
CCAATATCTTCAAGCTGTTG+CGG - chr6.2:33959867-33959886 None:intergenic 40.0%
CGATCTGCGATTTATAGCAT+TGG + chr6.2:33958472-33958491 MS.gene03402:intron 40.0%
CGCTATGTTTCTTGCAAGAT+CGG + chr6.2:33959821-33959840 MS.gene03402:CDS 40.0%
CTGTCATAGTTCGGATCATT+GGG - chr6.2:33958354-33958373 None:intergenic 40.0%
GAGAGAATCTTGAGATGTTG+GGG + chr6.2:33959969-33959988 MS.gene03402:CDS 40.0%
GTGAGAGAATCTTGAGATGT+TGG + chr6.2:33959967-33959986 MS.gene03402:CDS 40.0%
TGTCATAGTTCGGATCATTG+GGG - chr6.2:33958353-33958372 None:intergenic 40.0%
TGTGAATGTCATTGTACAGG+CGG + chr6.2:33958267-33958286 MS.gene03402:CDS 40.0%
TGTTTCTTCAAAAATGCCGG+TGG - chr6.2:33958967-33958986 None:intergenic 40.0%
TTGCTAAAAGCAAGACTTGC+TGG + chr6.2:33959945-33959964 MS.gene03402:CDS 40.0%
TTGGAGCAATATGAATCTGG+TGG + chr6.2:33960056-33960075 MS.gene03402:CDS 40.0%
! AGCTCTTGATGATTTGGCTT+TGG + chr6.2:33960271-33960290 MS.gene03402:CDS 40.0%
! ATCGGCTGATTCAACTAGTT+TGG - chr6.2:33958866-33958885 None:intergenic 40.0%
! GCAAACTGATTCTTAGCATC+AGG - chr6.2:33960302-33960321 None:intergenic 40.0%
! TGGAAGCAAAGTGCTTCAAA+TGG + chr6.2:33959914-33959933 MS.gene03402:CDS 40.0%
! TTGAAGCACTTTGCTTCCAA+TGG - chr6.2:33959913-33959932 None:intergenic 40.0%
AAACCATTGACGACATCGTC+AGG - chr6.2:33959738-33959757 None:intergenic 45.0%
AATCTTGAGATGTTGGGGTG+GGG + chr6.2:33959974-33959993 MS.gene03402:CDS 45.0%
ACCTCAGTGCTGTCATAGTT+CGG - chr6.2:33958363-33958382 None:intergenic 45.0%
AGAATCTTGAGATGTTGGGG+TGG + chr6.2:33959972-33959991 MS.gene03402:CDS 45.0%
CAAATTCTGCTATGCAACGG+TGG - chr6.2:33958434-33958453 None:intergenic 45.0%
CCGCAACAGCTTGAAGATAT+TGG + chr6.2:33959864-33959883 MS.gene03402:CDS 45.0%
GAATCTTGAGATGTTGGGGT+GGG + chr6.2:33959973-33959992 MS.gene03402:CDS 45.0%
GCGAGATCTTCAACAACTAC+CGG - chr6.2:33959804-33959823 None:intergenic 45.0%
GCTAGAATATCAACCGTGTC+CGG - chr6.2:33958907-33958926 None:intergenic 45.0%
GCTGTCATAGTTCGGATCAT+TGG - chr6.2:33958355-33958374 None:intergenic 45.0%
TCGATGATTTCGGCGTGTAA+AGG - chr6.2:33959063-33959082 None:intergenic 45.0%
TGGAAGTAGCAAACCAGGAT+GGG + chr6.2:33959998-33960017 MS.gene03402:CDS 45.0%
! ACTATGACAGCACTGAGGTA+TGG + chr6.2:33958364-33958383 MS.gene03402:intron 45.0%
! GCTTTTCATAGCTAGAGCTG+TGG + chr6.2:33958927-33958946 MS.gene03402:CDS 45.0%
!! CAGTTGATGATGTGAAGGCA+AGG + chr6.2:33959112-33959131 MS.gene03402:CDS 45.0%
ACATAACCAACCTTCGGACG+CGG - chr6.2:33959439-33959458 None:intergenic 50.0%
ATCTTGAGATGTTGGGGTGG+GGG + chr6.2:33959975-33959994 MS.gene03402:CDS 50.0%
CGTCGGCAGCTTCTTTCAAT+AGG - chr6.2:33959296-33959315 None:intergenic 50.0%
CTTTGCCACAGACGATGTTG+TGG + chr6.2:33958666-33958685 MS.gene03402:CDS 50.0%
GATCGTAGACATACCGGACA+CGG + chr6.2:33958891-33958910 MS.gene03402:CDS 50.0%
GGCGATGGAAAAACGACAAG+CGG + chr6.2:33959254-33959273 MS.gene03402:CDS 50.0%
GGTTGACGACATTCTTCCAC+CGG + chr6.2:33958948-33958967 MS.gene03402:CDS 50.0%
GTGGAAGTAGCAAACCAGGA+TGG + chr6.2:33959997-33960016 MS.gene03402:CDS 50.0%
TACACGCCGAAATCATCGAG+CGG + chr6.2:33959064-33959083 MS.gene03402:CDS 50.0%
TCCGAACTATGACAGCACTG+AGG + chr6.2:33958359-33958378 MS.gene03402:CDS 50.0%
TGTCATTGTACAGGCGGTTC+TGG + chr6.2:33958273-33958292 MS.gene03402:CDS 50.0%
TGTTGCCACAACATCGTCTG+TGG - chr6.2:33958674-33958693 None:intergenic 50.0%
TTGAAAGAAGCTGCCGACGA+AGG + chr6.2:33959297-33959316 MS.gene03402:CDS 50.0%
! TGAAGTATTCCGCGTGCGTT+CGG - chr6.2:33959399-33959418 None:intergenic 50.0%
!! TTCTGGTGGTAAAGGCACCT+GGG + chr6.2:33958290-33958309 MS.gene03402:CDS 50.0%
CCAACGCCGCTCGATGATTT+CGG - chr6.2:33959073-33959092 None:intergenic 55.0%
CCACCTGACGATGTCGTCAA+TGG + chr6.2:33959732-33959751 MS.gene03402:CDS 55.0%
CCATTGACGACATCGTCAGG+TGG - chr6.2:33959735-33959754 None:intergenic 55.0%
CGAAATCATCGAGCGGCGTT+GGG + chr6.2:33959071-33959090 MS.gene03402:CDS 55.0%
CTCGATATACCGAACGCACG+CGG + chr6.2:33959387-33959406 MS.gene03402:CDS 55.0%
GAAATCATCGAGCGGCGTTG+GGG + chr6.2:33959072-33959091 MS.gene03402:CDS 55.0%
! ACAGGCGGTTCTGGTGGTAA+AGG + chr6.2:33958282-33958301 MS.gene03402:CDS 55.0%
! CATTGTACAGGCGGTTCTGG+TGG + chr6.2:33958276-33958295 MS.gene03402:CDS 55.0%
!! CTGGGGTGGATTGCTTGAGA+CGG + chr6.2:33958308-33958327 MS.gene03402:CDS 55.0%
!! GTTCTGGTGGTAAAGGCACC+TGG + chr6.2:33958289-33958308 MS.gene03402:CDS 55.0%
!! TCTGGTGGTAAAGGCACCTG+GGG + chr6.2:33958291-33958310 MS.gene03402:CDS 55.0%
ATGTCGAAAGCCGCGTCCGA+AGG + chr6.2:33959426-33959445 MS.gene03402:CDS 60.0%
CCGAAATCATCGAGCGGCGT+TGG + chr6.2:33959070-33959089 MS.gene03402:CDS 60.0%
CGTCTCAAGCAATCCACCCC+AGG - chr6.2:33958310-33958329 None:intergenic 60.0%
GGGGGTGGAAGTAGCAAACC+AGG + chr6.2:33959993-33960012 MS.gene03402:CDS 60.0%
TTGAGATGTTGGGGTGGGGG+TGG + chr6.2:33959978-33959997 MS.gene03402:CDS 60.0%
CGAAAGCCGCGTCCGAAGGT+TGG + chr6.2:33959430-33959449 MS.gene03402:CDS 65.0%
! ATCATCGAGCGGCGTTGGGG+AGG + chr6.2:33959075-33959094 MS.gene03402:CDS 65.0%
!! GGTGGTAAAGGCACCTGGGG+TGG + chr6.2:33958294-33958313 MS.gene03402:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 33958255 33960406 33958255 ID=MS.gene03402
chr6.2 mRNA 33958255 33960406 33958255 ID=MS.gene03402.t1;Parent=MS.gene03402
chr6.2 exon 33958255 33958380 33958255 ID=MS.gene03402.t1.exon1;Parent=MS.gene03402.t1
chr6.2 CDS 33958255 33958380 33958255 ID=cds.MS.gene03402.t1;Parent=MS.gene03402.t1
chr6.2 exon 33958583 33960116 33958583 ID=MS.gene03402.t1.exon2;Parent=MS.gene03402.t1
chr6.2 CDS 33958583 33960116 33958583 ID=cds.MS.gene03402.t1;Parent=MS.gene03402.t1
chr6.2 exon 33960252 33960406 33960252 ID=MS.gene03402.t1.exon3;Parent=MS.gene03402.t1
chr6.2 CDS 33960252 33960406 33960252 ID=cds.MS.gene03402.t1;Parent=MS.gene03402.t1
Gene Sequence

>MS.gene03402

ATGGTTGAATCTTGTGAATGTCATTGTACAGGCGGTTCTGGTGGTAAAGGCACCTGGGGTGGATTGCTTGAGACGGATGACATGAACTTACTTGACCCCAATGATCCGAACTATGACAGCACTGAGGTATGGAGTTAAGATTTCATCGTTATCTTATGATAGAAAGCGCTGTAGCACCACCGTTGCATAGCAGAATTTGAACAAACTACACTTTCCGCGATCTGCGATTTATAGCATTGGATCAAATCTTTGGTCACTTATTTTGTTAAAAGTGTAATTTTTGTTATAATATACCAACAACTATGCAACTATATATATTGTTTTGTAGGAATTCGATGATTCAAATGAAAAGAAAACGAACACCGCATTGGAAGAGTACAAGAAAAAAGCTACAATAATAGTTGAAGAATACTTTGCCACAGACGATGTTGTGGCAACACTGAGTGAAGTTAGAGAAATTGGTAAACCAGAATACAGCTACTATTTTGTCAAAAAGCTTGTTTCGATGTCAATGGACAGACACGACAAAGAAAAAGAAATGGCAGCAATTCTCTTATCTGCACTTTATGCTGACATAATTCACCCTTCACAAGTTTACAAAGGATTCACCAAACTAGTTGAATCAGCCGATGATTTGATCGTAGACATACCGGACACGGTTGATATTCTAGCGCTTTTCATAGCTAGAGCTGTGGTTGACGACATTCTTCCACCGGCATTTTTGAAGAAACAGATAGCAAACTTACCAAATGATTCTAAAGGAGCTGAGGTTTTAAAGAAAGCTGAGAAAAGCTATCTAACAGCACCTTTACACGCCGAAATCATCGAGCGGCGTTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTGAAGGCAAGGATAAACAATTTCTTGAAAGAATATGTTGTAAGTGGTGACAAGACAGAAGCTTTTAGATGCATCAAAGACTTGAATGTTCCTTTCTTTCATCATGAAATAGTGAAAAGAGCTCTTATAATGGCGATGGAAAAACGACAAGCGGAAACGCCATTATTAGACCTATTGAAAGAAGCTGCCGACGAAGGTTTCATTAACACAAGCCAAATGTCAAAAGGGTTCACAAGGTTGATCGAAAATGTCGATGATTTATCGCTCGATATACCGAACGCACGCGGAATACTTCAACAACTAATGTCGAAAGCCGCGTCCGAAGGTTGGTTATGTGTTTCATCAGTAAAATCACTCTCAATTGAGCCGGAAAAGAACACAATACAAGAAAATGTTGCTAAAAGTTTCAAGATGAAAACTCAATCCATCATTCAAGAGTACTTTTTATCAGGTGATATATTCGAAGTGATTAGTTGTTTAGAACAAGAGAACAACAAAAACTGTGGTGAACTAAATGCAATCTTTGTGAAGAAGCTAATAACATTAGCAATGGATAGAAAGAATAGAGAGAAAGAAATGGCTTCGGTGTTACTTTCATCGCTTTGTTTTCCACCTGACGATGTCGTCAATGGTTTTGTGATGCTAATTGAATCAGCAGATGATACTGCTTTAGACAATCCGGTAGTTGTTGAAGATCTCGCTATGTTTCTTGCAAGATCGGTAGTTGACGAAGTTTTAGCACCGCAACAGCTTGAAGATATTGGAACACAATGTATAAGTCAAGATTCCATTGGAAGCAAAGTGCTTCAAATGGCAAAGTCATTGCTAAAAGCAAGACTTGCTGGTGAGAGAATCTTGAGATGTTGGGGTGGGGGTGGAAGTAGCAAACCAGGATGGGAAATTGAAGATGTGAAAGATATGATAGGGAAATTGTTGGAGCAATATGAATCTGGTGGTGATAAAAAAGAGGCTTGTAGATGCATGAAAGAGTTAGGTATGCCATTTTTTCATCATGAGGTTGTGAAGAAAAGTTTGGTGAAAATTATTGAAAAGAAAAATGAGAGATTGTGGGGTTTACTTAAAGAGTGTTTTGAATCTGGATTAATAACTATGTATCAAATGGTTAAAGGCTTTGGAAGAGTTGAAGAAGCTCTTGATGATTTGGCTTTGGATGTTCCTGATGCTAAGAATCAGTTTGCATATTACGTTGAAAAAGCAAAGAATGAAGGATGGTTAGATAGTTCATTTTGTTTCAAGAATGCAACAGAGAATGGCACATGCTAA
Protein sequence

>MS.gene03402.t1

MVESCECHCTGGSGGKGTWGGLLETDDMNLLDPNDPNYDSTEEFDDSNEKKTNTALEEYKKKATIIVEEYFATDDVVATLSEVREIGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLPNDSKGAEVLKKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKTEAFRCIKDLNVPFFHHEIVKRALIMAMEKRQAETPLLDLLKEAADEGFINTSQMSKGFTRLIENVDDLSLDIPNARGILQQLMSKAASEGWLCVSSVKSLSIEPEKNTIQENVAKSFKMKTQSIIQEYFLSGDIFEVISCLEQENNKNCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPPDDVVNGFVMLIESADDTALDNPVVVEDLAMFLARSVVDEVLAPQQLEDIGTQCISQDSIGSKVLQMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEQYESGGDKKEACRCMKELGFGRVEEALDDLALDVPDAKNQFAYYVEKAKNEGWLDSSFCFKNATENGTC